Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 322 of 770
Found at i:98580043 original size:53 final size:53
Alignment explanation
Indices: 98579918--98580182 Score: 289
Period size: 53 Copynumber: 5.1 Consensus size: 53
98579908 TATTATAGTT
* *
98579918 ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTGTGAGGGTATTCCGGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATG-GGGTATTCCGGTC
*
98579972 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTTTGGGGT-TATCCGGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGTAT-TCCGGTC
* * *
98580025 ATTTTACCCTATGCGGGTATTCCGGTCATTTTACCCTATGGGGATATTCCGG--
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGG-TATTCCGGTC
* *
98580077 ----TACCTTATGGGGGTATTTC-AGTCATTTTACCCTATGGTGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGA-TCATTTTACCCTATGG-GGTATTCCGGTC
* * * *
98580127 A-TTTACCCTAT-GGGGTAATTCTGGTCATTTTATCCTATAGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTC-GATCATTTTACCCTAT-GGGGTATTCCGGTC
98580180 ATT
1 ATT
98580183 ATTTTGTCCC
Statistics
Matches: 182, Mismatches: 15, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
48 39 0.21
49 2 0.01
52 10 0.05
53 83 0.46
54 47 0.26
55 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (53 bp):
ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGTATTCCGGTC
Found at i:98580153 original size:101 final size:101
Alignment explanation
Indices: 98579918--98580178 Score: 282
Period size: 101 Copynumber: 2.5 Consensus size: 101
98579908 TATTATAGTT
* * * *
98579918 ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTGT-GAGGGTATTCCGGTCATTTTACCCT
1 ATTTTACCCTATGCGGGTATTCCGGTCATTTTACCCTATAG-GGGTATTCCGG------TACCCT
*
98579982 ATGGGGGTATTTCGATCATTTTACCCTTTGGGGTTATCCGGTC
59 ATGGGGGTATTTCGATCATTTTACCCTATGGGGTTATCCGGTC
*
98580025 ATTTTACCCTATGCGGGTATTCCGGTCATTTTACCCTAT-GGGGATATTCCGGTACCTTATGGGG
1 ATTTTACCCTATGCGGGTATTCCGGTCATTTTACCCTATAGGGG-TATTCCGGTACCCTATGGGG
*
98580089 GTATTTC-AGTCATTTTACCCTATGGTGG-TATTTCGGTC
65 GTATTTCGA-TCATTTTACCCTATGG-GGTTA-TCCGGTC
* * *
98580127 A-TTTACCCTATG-GGGTAATTCTGGTCATTTTATCCTATAGGGGTATTTCGGT
1 ATTTTACCCTATGCGGGT-ATTCCGGTCATTTTACCCTATAGGGGTATTCCGGT
98580179 CATTATTTTG
Statistics
Matches: 138, Mismatches: 10, Indels: 18
0.83 0.06 0.11
Matches are distributed among these distances:
100 5 0.04
101 73 0.53
102 13 0.09
106 3 0.02
107 44 0.32
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (101 bp):
ATTTTACCCTATGCGGGTATTCCGGTCATTTTACCCTATAGGGGTATTCCGGTACCCTATGGGGG
TATTTCGATCATTTTACCCTATGGGGTTATCCGGTC
Found at i:98580179 original size:27 final size:26
Alignment explanation
Indices: 98579918--98580182 Score: 276
Period size: 27 Copynumber: 10.1 Consensus size: 26
98579908 TATTATAGTT
*
98579918 ATTTTACCCTATGAGGGTATTTCGATC
1 ATTTTACCCTATG-GGGTATTTCGGTC
* *
98579945 ATTTTACCCTGTGAGGGTATTCCGGTC
1 ATTTTACCCTATG-GGGTATTTCGGTC
*
98579972 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
* *
98579999 ATTTTACCCTTTGGGGT-TATCCGGTC
1 ATTTTACCCTATGGGGTAT-TTCGGTC
*
98580025 ATTTTACCCTATGCGGGTATTCCGGTC
1 ATTTTACCCTATG-GGGTATTTCGGTC
*
98580052 ATTTTACCCTATGGGGATATTCCGG--
1 ATTTTACCCTATGGGG-TATTTCGGTC
* *
98580077 ----TACCTTATGGGGGTATTTCAGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
98580100 ATTTTACCCTATGGTGGTATTTCGGTC
1 ATTTTACCCTATGG-GGTATTTCGGTC
*
98580127 A-TTTACCCTATGGGGTAATTCTGGTC
1 ATTTTACCCTATGGGGTATTTC-GGTC
*
98580153 ATTTTATCCTATAGGGGTATTTCGGTC
1 ATTTTACCCTAT-GGGGTATTTCGGTC
98580180 ATT
1 ATT
98580183 ATTTTGTCCC
Statistics
Matches: 204, Mismatches: 18, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
21 13 0.06
22 4 0.02
25 8 0.04
26 44 0.22
27 124 0.61
28 11 0.05
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTTACCCTATGGGGTATTTCGGTC
Found at i:98587352 original size:13 final size:13
Alignment explanation
Indices: 98587334--98587372 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
98587324 TACTTTCTTT
*
98587334 ATACATTCAATCA
1 ATACATACAATCA
98587347 ATACATACAATCA
1 ATACATACAATCA
*
98587360 ATATATACAATCA
1 ATACATACAATCA
98587373 TCATTCATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (13 bp):
ATACATACAATCA
Found at i:98589444 original size:21 final size:20
Alignment explanation
Indices: 98589420--98589458 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
98589410 AAACTTGTAT
98589420 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
98589441 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
98589459 GAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:98590407 original size:33 final size:33
Alignment explanation
Indices: 98590365--98590432 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
98590355 AATTGTATGA
98590365 TAAATATTTGGCTTCTTCTTAATTATGTGTTCT
1 TAAATATTTGGCTTCTTCTTAATTATGTGTTCT
98590398 TAAATATTTGGCTTCTTCTTAATTATGTGTTCT
1 TAAATATTTGGCTTCTTCTTAATTATGTGTTCT
98590431 TA
1 TA
98590433 GTTCTCGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.54
Consensus pattern (33 bp):
TAAATATTTGGCTTCTTCTTAATTATGTGTTCT
Found at i:98590418 original size:19 final size:19
Alignment explanation
Indices: 98590365--98590419 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
98590355 AATTGTATGA
98590365 TAAATATTTGGCTTCTTCT
1 TAAATATTTGGCTTCTTCT
* *
98590384 T-AAT-TAT-G--TGTTCT
1 TAAATATTTGGCTTCTTCT
98590398 TAAATATTTGGCTTCTTCT
1 TAAATATTTGGCTTCTTCT
98590417 TAA
1 TAA
98590420 TTATGTGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
14 6 0.22
15 3 0.11
16 3 0.11
17 3 0.11
18 3 0.11
19 9 0.33
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.53
Consensus pattern (19 bp):
TAAATATTTGGCTTCTTCT
Found at i:98597990 original size:82 final size:82
Alignment explanation
Indices: 98597853--98598025 Score: 256
Period size: 82 Copynumber: 2.1 Consensus size: 82
98597843 ATGGTAAGCA
* *
98597853 AAGGTAAGAATGAGGTAGGCCAAAATGACCTAAAGCCAGTGAGTACAGAATATAAACCTCGTGTG
1 AAGGTAAGAATGAGGTAGGCCAAAATGACCCAAAGCCAGTGAGTACAGAATATAAACCTCATGTG
98597918 CCATACCCCAATGCGAC
66 CCATACCCCAATGCGAC
*** *
98597935 AAGGTAAGAATGAGGTAGGTTGAAATGACCCAAAGCCGGTGAGTACAGAATATAAACCTCATGTG
1 AAGGTAAGAATGAGGTAGGCCAAAATGACCCAAAGCCAGTGAGTACAGAATATAAACCTCATGTG
* * *
98598000 CGATACCCTAATGTGAC
66 CCATACCCCAATGCGAC
*
98598017 AAGGAAAGA
1 AAGGTAAGA
98598026 CCGATCAGAC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (82 bp):
AAGGTAAGAATGAGGTAGGCCAAAATGACCCAAAGCCAGTGAGTACAGAATATAAACCTCATGTG
CCATACCCCAATGCGAC
Found at i:98607356 original size:27 final size:27
Alignment explanation
Indices: 98607280--98607386 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
98607270 TTTAGTTTAC
* *
98607280 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
*
98607307 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
98607334 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
98607361 TAAAATTAC-CAAAGTACCCTCGATTT
1 TAAAATTACTGAAA-TACCCTCGATTT
98607387 ACAGAATTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.04
27 65 0.94
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:98607394 original size:27 final size:27
Alignment explanation
Indices: 98607375--98607693 Score: 404
Period size: 27 Copynumber: 11.8 Consensus size: 27
98607365 ATTACCAAAG
* *
98607375 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
98607402 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98607429 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
98607456 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98607483 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
98607510 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98607537 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
98607564 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98607591 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * **
98607618 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * * **
98607645 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
98607672 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
98607694 AAAAATACCC
Statistics
Matches: 251, Mismatches: 41, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 251 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:98607412 original size:81 final size:81
Alignment explanation
Indices: 98607321--98607585 Score: 210
Period size: 81 Copynumber: 3.3 Consensus size: 81
98607311 AATACTGAAA
* * **
98607321 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCTCGAT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTT-GACTTACAAAATTACCAAAGTACCCTCGAT
98607385 TTACAGAATTA-TCGTTT
65 TTACAGAATTACT-GTTT
* * * *** * ****
98607402 TACCCCCGATTTACATAATTACCGTTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTTGACTTACAAAATTACCAAAGTACCCTCGATT
98607467 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*** * * * *****
98607483 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTTGACTTACAAAATTACCAAAGTACCCTCGATT
* * *
98607548 TATAAAATTACCGTTT
66 TACAGAATTACTGTTT
* * *
98607564 TACCCTTGATTTACAGAATTAC
1 TACCCTCGATTTATAAAATTAC
98607586 TGTTTTACCC
Statistics
Matches: 155, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
81 150 0.97
82 5 0.03
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTTGACTTACAAAATTACCAAAGTACCCTCGATT
TACAGAATTACTGTTT
Found at i:98607422 original size:54 final size:54
Alignment explanation
Indices: 98607375--98607693 Score: 458
Period size: 54 Copynumber: 5.9 Consensus size: 54
98607365 ATTACCAAAG
* * * * *
98607375 TACCCTCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
98607429 TACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
98607483 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
98607537 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
98607591 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
98607645 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
98607694 AAAAATACCC
Statistics
Matches: 240, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 240 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:98607702 original size:27 final size:27
Alignment explanation
Indices: 98607672--98607784 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
98607662 ATTACTATTT
* *
98607672 TACCCTCGATTTACAAAATTACAAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
98607699 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
98607726 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
98607753 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCGATTT-ATAAAATTACCAAAA
98607780 TACCC
1 TACCC
98607785 CTGTAGGGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 2 0.03
27 71 0.97
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:98607730 original size:54 final size:54
Alignment explanation
Indices: 98607672--98607785 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
98607662 ATTACTATTT
*
98607672 TACCCTCGA-TTTACAAAATTACAAAAATACCC-TCAATTTGTAAAATTACCAAAA
1 TACCC-CGAGTTTACAAAATTACAAAAATACCCAT-AATTTGAAAAATTACCAAAA
* ** * ** *
98607726 TACCCCTAGTTTGTAAAATTACCAAAATACCCATGGTTTGAAAAATTACTAAAA
1 TACCCCGAGTTTACAAAATTACAAAAATACCCATAATTTGAAAAATTACCAAAA
98607780 TACCCC
1 TACCCC
98607786 TGTAGGGTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.04
54 47 0.94
55 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (54 bp):
TACCCCGAGTTTACAAAATTACAAAAATACCCATAATTTGAAAAATTACCAAAA
Found at i:98607796 original size:54 final size:54
Alignment explanation
Indices: 98607686--98607812 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
98607676 CTCGATTTAC
* **
98607686 AAAATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
* ** *
98607740 AAAATTACCAAAATACCCAT-GGTTTGAAAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACAAAAATACCC-TCAATTTGAAAAATTACCAAAATACCCCTAGT-GGGT
**
98607794 AAAATTACTGAAATACCCT
1 AAAATTACAAAAATACCCT
98607813 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
53 3 0.05
54 58 0.94
55 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
Found at i:98607797 original size:27 final size:27
Alignment explanation
Indices: 98607711--98607830 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
98607701 CCCTCAATTT
**
98607711 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
98607738 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
98607765 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
98607792 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
98607819 GTAAAATTACCA
1 GTAAAATTACCA
98607831 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:98608480 original size:28 final size:28
Alignment explanation
Indices: 98608448--98608506 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
98608438 GCGTAGATCA
98608448 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98608476 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98608504 CGA
1 CGA
98608507 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98611684 original size:27 final size:27
Alignment explanation
Indices: 98611608--98611697 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
98611598 TTTAGTTTAC
* *
98611608 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
98611635 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
98611662 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
98611689 TAAAATTAC
1 TAAAATTAC
98611698 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:98611707 original size:54 final size:53
Alignment explanation
Indices: 98611608--98611713 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
98611598 TTTAGTTTAC
* *
98611608 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCC-CGATTTG
* * *
98611662 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCGATTT
98611714 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 14 0.31
54 31 0.69
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCGATTTG
Found at i:98611774 original size:27 final size:27
Alignment explanation
Indices: 98611703--98611964 Score: 287
Period size: 27 Copynumber: 9.8 Consensus size: 27
98611693 ATTACCAAAG
* *
98611703 TACCC-CGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98611729 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98611755 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* **
98611782 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
98611809 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
98611836 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
98611863 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * **
98611890 TACCGTC-ATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * * **
98611916 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
98611943 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
98611965 AGAAATACCC
Statistics
Matches: 197, Mismatches: 37, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
26 46 0.23
27 151 0.77
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:98611812 original size:54 final size:54
Alignment explanation
Indices: 98611703--98611964 Score: 334
Period size: 54 Copynumber: 4.9 Consensus size: 54
98611693 ATTACCAAAG
* * **
98611703 TACCC-CGATTTACAGAATTATCGTTTTACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTATTT
* *
98611755 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
98611809 TACCCTCGATTTATAAAATTATCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTATTT
* *
98611863 TACCCTCGATTTACAAAATTATCGTTTTACCGTC-ATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * * * *
98611916 TTCTCTTGATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTATC-GTTTTACCCTCGATTTACAGAATTAC
98611965 AGAAATACCC
Statistics
Matches: 184, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
52 6 0.03
53 66 0.36
54 112 0.61
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:98611812 original size:80 final size:80
Alignment explanation
Indices: 98611703--98611963 Score: 321
Period size: 80 Copynumber: 3.3 Consensus size: 80
98611693 ATTACCAAAG
* * * *
98611703 TACCC-CGATTTACAGAATTATCGTTTTACCCCGATTTACATAATTACCGTTTTACCCTCGATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCCGATTTATAAAATTACCGTTTTACCCTTGATTT
* * *
98611767 ATAAAATTACCGTTT
66 ACAGAATTACTGTTT
* * *
98611782 TACCCTCGATTTACAGAATTA-CTATTTTACCCTCGATTTATAAAATTATCGTTTTACCCTTGAT
1 TACCCTCGATTTACAAAATTATC-GTTTTACCC-CGATTTATAAAATTACCGTTTTACCCTTGAT
98611846 TTACAGAATTACTGTTT
64 TTACAGAATTACTGTTT
* * ** * *
98611863 TACCCTCGATTTACAAAATTATCGTTTTACCGTC-ATTTATAGAATTACTATTTTTCTCTTGATT
1 TACCCTCGATTTACAAAATTATCGTTTTACC-CCGATTTATAAAATTACCGTTTTACCCTTGATT
*
98611927 TACAGAATTACTATTT
65 TACAGAATTACTGTTT
98611943 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
98611964 CAGAAATACC
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
79 6 0.04
80 83 0.52
81 69 0.43
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTATCGTTTTACCCCGATTTATAAAATTACCGTTTTACCCTTGATTT
ACAGAATTACTGTTT
Found at i:98611973 original size:27 final size:27
Alignment explanation
Indices: 98611943--98612028 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
98611933 ATTACTATTT
*
98611943 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
98611970 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
98611997 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
98612024 TACCC
1 TACCC
98612029 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:98611990 original size:134 final size:134
Alignment explanation
Indices: 98611710--98611991 Score: 345
Period size: 134 Copynumber: 2.1 Consensus size: 134
98611700 AAGTACCCCG
* *
98611710 ATTTACAGAATTA-TCGTTTTACCCCGATTTACATAATTACCGTTTTACCCTCGATTTATAAAAT
1 ATTTACAAAATTACT-GTTTTACCCCGATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
* * ***
98611774 TACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTTTAC
65 TACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATCGAAATAC
**
98611839 CCTTG
130 CCTCA
* * * *
98611844 ATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCGTC-ATTTATAGAAT
1 ATTTACAAAATTACTGTTTTACCC-CGATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
* * * *
98611908 TACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA-CAGAAATA
65 TACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATC-GAAATA
98611972 CCCTCA
129 CCCTCA
**
98611978 ATTTGTAAAATTAC
1 ATTTACAAAATTAC
98611992 CAAAATACCC
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
133 1 0.01
134 100 0.79
135 26 0.20
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (134 bp):
ATTTACAAAATTACTGTTTTACCCCGATTTACAAAATTACCGTTTTACCCTCGATTTATAAAATT
ACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATCGAAATACC
CTCA
Found at i:98612015 original size:54 final size:53
Alignment explanation
Indices: 98611957--98612083 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
98611947 CTCGATTTAC
* **
98611957 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
98612011 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
98612065 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
98612084 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:98612035 original size:27 final size:27
Alignment explanation
Indices: 98611957--98612055 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
98611947 CTCGATTTAC
*
98611957 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
98611984 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
98612011 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
98612038 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
98612056 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:98612068 original size:27 final size:27
Alignment explanation
Indices: 98611982--98612101 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
98611972 CCCTCAATTT
**
98611982 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
98612009 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
98612036 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
98612063 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
98612090 GTAAAATTACCA
1 GTAAAATTACCA
98612102 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:98612752 original size:28 final size:28
Alignment explanation
Indices: 98612720--98612778 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
98612710 GCGTAGATCA
98612720 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98612748 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98612776 CGA
1 CGA
98612779 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98615958 original size:27 final size:27
Alignment explanation
Indices: 98615882--98615971 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
98615872 TTTAGTTTAC
* *
98615882 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
98615909 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
98615936 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
98615963 TAAAATTAC
1 TAAAATTAC
98615972 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:98615981 original size:54 final size:54
Alignment explanation
Indices: 98615882--98615988 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
98615872 TTTAGTTTAC
* * *
98615882 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
98615936 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
98615989 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:98615996 original size:27 final size:27
Alignment explanation
Indices: 98615977--98616295 Score: 341
Period size: 27 Copynumber: 11.8 Consensus size: 27
98615967 ATTACCAAAG
*
98615977 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
98616004 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
98616031 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
98616058 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
98616085 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
98616112 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
98616139 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** *
98616166 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
98616193 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
98616220 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * ** **
98616247 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
98616274 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
98616296 AGAAATACCC
Statistics
Matches: 254, Mismatches: 38, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 254 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:98616014 original size:81 final size:81
Alignment explanation
Indices: 98615923--98616213 Score: 215
Period size: 81 Copynumber: 3.6 Consensus size: 81
98615913 AATACTGAAA
* * * **
98615923 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
98615988 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
98616004 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
98616069 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*** * * ***** *
98616085 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
* * *
98616150 TATAAAATTACCGTTT
66 TACAGAATTACTGTTT
* * * * *** *
98616166 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTA
98616214 TCGTTTTACC
Statistics
Matches: 179, Mismatches: 30, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 178 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
TACAGAATTACTGTTT
Found at i:98616220 original size:81 final size:80
Alignment explanation
Indices: 98615977--98616295 Score: 422
Period size: 81 Copynumber: 4.0 Consensus size: 80
98615967 ATTACCAAAG
* * * *
98615977 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
98616042 TACAAAATTACCGTTT
66 TACAAAATTA-CGTTT
* * *
98616058 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
98616123 TACAGAATTACTGTTT
66 TACAAAATTAC-GTTT
* * * *
98616139 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
98616204 TACAAAATTATCGTTT
66 TACAAAATTA-CGTTT
* * ** * * * **
98616220 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
98616285 TACAAAATTAC
66 TACAAAATTAC
98616296 AGAAATACCC
Statistics
Matches: 214, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
80 2 0.01
81 211 0.99
82 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTACGTTT
Found at i:98616304 original size:27 final size:27
Alignment explanation
Indices: 98616274--98616359 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
98616264 ATTACTATTT
*
98616274 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
98616301 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
98616328 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
98616355 TACCC
1 TACCC
98616360 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:98616322 original size:54 final size:54
Alignment explanation
Indices: 98615977--98616295 Score: 458
Period size: 54 Copynumber: 5.9 Consensus size: 54
98615967 ATTACCAAAG
* * * * * *
98615977 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
98616031 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
98616085 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
98616139 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
98616193 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
98616247 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
98616296 AGAAATACCC
Statistics
Matches: 241, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 241 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:98616346 original size:54 final size:53
Alignment explanation
Indices: 98616288--98616414 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
98616278 CTCGATTTAC
* **
98616288 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
98616342 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
98616396 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
98616415 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:98616366 original size:27 final size:27
Alignment explanation
Indices: 98616288--98616386 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
98616278 CTCGATTTAC
*
98616288 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
98616315 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
98616342 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
98616369 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
98616387 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:98616399 original size:27 final size:27
Alignment explanation
Indices: 98616313--98616432 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
98616303 CCCTCAATTT
**
98616313 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
98616340 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
98616367 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
98616394 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
98616421 GTAAAATTACCA
1 GTAAAATTACCA
98616433 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:98617083 original size:28 final size:28
Alignment explanation
Indices: 98617051--98617119 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
98617041 GCGTAGATCA
98617051 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98617079 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
98617107 CGATA-TACCCCTA
1 CGAAATTACCCCTA
98617120 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98621203 original size:55 final size:53
Alignment explanation
Indices: 98621095--98621341 Score: 184
Period size: 55 Copynumber: 4.7 Consensus size: 53
98621085 ATTAGGGTTT
* * * * *
98621095 AAGGATACCATGTACGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGG-CATTGATAA--CTTCATAAGGC
* * **
98621150 AAGGATATCATGTAAGGCCATGTCAATTCATGGCATTGATAACTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTT-C-ATAAGGC
* * * * *
98621205 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTTCATAAGGC
* * * * *
98621258 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTTCAT-AAGGC
* * *
98621307 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCA
98621342 ATGGTAAGGT
Statistics
Matches: 158, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
49 31 0.20
51 1 0.01
52 8 0.05
53 42 0.27
54 8 0.05
55 64 0.41
56 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAACTTCATAAGGC
Found at i:98621568 original size:16 final size:16
Alignment explanation
Indices: 98621547--98621577 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98621537 ATAAATTTGA
98621547 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
98621563 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
98621578 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:98623624 original size:43 final size:44
Alignment explanation
Indices: 98623563--98623655 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
98623553 TCCTAATTAG
98623563 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
98623606 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
98623650 -AAAATA
1 GAAAATA
98623656 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:98623699 original size:19 final size:18
Alignment explanation
Indices: 98623677--98623716 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
98623667 TGAATAAAAC
98623677 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
*
98623696 TTATCTACCTAAATAAAT
1 TTATCTACCCAAATAAAT
98623714 TTA
1 TTA
98623717 AAATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:98628312 original size:43 final size:44
Alignment explanation
Indices: 98628264--98628356 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
98628254 TCCTAATTAG
98628264 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
98628307 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
98628351 -AAAATA
1 GAAAATA
98628357 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:98628400 original size:19 final size:18
Alignment explanation
Indices: 98628378--98628417 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
98628368 TGAATAAAAC
98628378 TTATCTACCCAAATAAGAT
1 TTATCTACCCAAATAA-AT
*
98628397 TTATCTACCTAAATAAAT
1 TTATCTACCCAAATAAAT
98628415 TTA
1 TTA
98628418 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCCAAATAAAT
Found at i:98633619 original size:4 final size:4
Alignment explanation
Indices: 98633610--98633662 Score: 61
Period size: 4 Copynumber: 13.2 Consensus size: 4
98633600 TAAATTTGAT
** ** *
98633610 TAAG TAAG TAAG TATT TAAG TAAG TAAG TAAG TATT TAAG TAAG TGAG
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG
98633658 TAAG T
1 TAAG T
98633663 GAAGAAGTTT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (4 bp):
TAAG
Found at i:98633633 original size:20 final size:20
Alignment explanation
Indices: 98633610--98633662 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
98633600 TAAATTTGAT
98633610 TAAGTAAGTAAGTATTTAAG
1 TAAGTAAGTAAGTATTTAAG
98633630 TAAGTAAGTAAGTATTTAAG
1 TAAGTAAGTAAGTATTTAAG
*
98633650 TAAGTGAGTAAGT
1 TAAGTAAGTAAGT
98633663 GAAGAAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (20 bp):
TAAGTAAGTAAGTATTTAAG
Found at i:98635439 original size:73 final size:72
Alignment explanation
Indices: 98635299--98635440 Score: 160
Period size: 73 Copynumber: 2.0 Consensus size: 72
98635289 CCTTCAGGAT
* * ** ** *
98635299 TTAACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCTGGATGTAGTAACTCGCACA
1 TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGAACTAGTAACTAGCACA
98635364 AATGGGC
66 AATGGGC
* * * *
98635371 TTAACCCGGATATAG-TAACTCGCACAAATGCCTTGGGGACTTAGCCCAGAACTAGTCACTAGCG
1 TTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCAGAACTAGTAACTAGCA
98635435 CAAATG
64 CAAATG
98635441 CCTTCGGGAC
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
72 5 0.09
73 52 0.91
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (72 bp):
TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGAACTAGTAACTAGCACA
AATGGGC
Found at i:98643264 original size:40 final size:40
Alignment explanation
Indices: 98643194--98643408 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
98643184 AAGCCAGGTA
* * * *
98643194 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
98643233 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
98643273 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
98643313 CCTTCGGGACTTAACCCGGATATAGTAACT--CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
98643351 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
98643391 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
98643409 TTATCATCCG
Statistics
Matches: 159, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
37 1 0.01
38 34 0.21
39 25 0.16
40 99 0.62
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:98643341 original size:80 final size:77
Alignment explanation
Indices: 98643194--98643408 Score: 274
Period size: 78 Copynumber: 2.8 Consensus size: 77
98643184 AAGCCAGGTA
* * * * * *
98643194 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATGTAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
98643258 TAACTCGCACAAATG
65 TAACT--CACAAATG
*
98643273 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
98643338 TAACTCACAAATG
65 TAACTCACAAATG
* *
98643351 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
98643409 TTATCATCCG
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
77 13 0.11
78 48 0.39
79 13 0.11
80 48 0.39
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (77 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCACAAATG
Found at i:98646743 original size:42 final size:43
Alignment explanation
Indices: 98646694--98646799 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 43
98646684 TATGTGTTAT
* * *
98646694 CATGTAAGACCACGTCTGGGACATTGGCAAC-ATGCTTGATTT
1 CATGTAAGACCACGTCTGGGACAGTGGCAACGATACTTGATTA
* * *
98646736 CTTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGACAGTGGCAACGATACTTGATTA
*
98646779 CATGTAAGACCATGTCTGGGA
1 CATGTAAGACCACGTCTGGGA
98646800 TGTTGGCATT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.02
42 26 0.49
43 26 0.49
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACAGTGGCAACGATACTTGATTA
Found at i:98646789 original size:43 final size:42
Alignment explanation
Indices: 98646694--98646799 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 42
98646684 TATGTGTTAT
* * *
98646694 CATGTAAGACCAC-GTCTGGGACATTGGCAACATGCTTGATTT
1 CATGTAAGACC-CTGTCTGGGACAGTGGCAACATACTTGATTA
* * *
98646736 CTTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCCTGTCTGGGACAGTGGCAAC-ATACTTGATTA
*
98646779 CATGTAAGACCATGTCTGGGA
1 CATGTAAGACCCTGTCTGGGA
98646800 TGTTGGCATT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 26 0.48
43 27 0.50
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (42 bp):
CATGTAAGACCCTGTCTGGGACAGTGGCAACATACTTGATTA
Found at i:98649302 original size:27 final size:28
Alignment explanation
Indices: 98649245--98649314 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
98649235 AAATTTGTAC
**
98649245 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
98649273 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
98649300 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
98649315 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:98649323 original size:27 final size:27
Alignment explanation
Indices: 98649245--98649326 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
98649235 AAATTTGTAC
* *
98649245 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
98649273 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
98649300 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
98649327 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:98657230 original size:27 final size:28
Alignment explanation
Indices: 98657173--98657242 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
98657163 AAATTTGTAC
**
98657173 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
98657201 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
98657228 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
98657243 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:98657251 original size:27 final size:27
Alignment explanation
Indices: 98657173--98657254 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
98657163 AAATTTGTAC
* *
98657173 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
98657201 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
98657228 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
98657255 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:98664832 original size:40 final size:40
Alignment explanation
Indices: 98664722--98664834 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
98664712 GTTATAATAG
*
98664722 CTCGCATAAATGCCTTCGGGAC-TAATCCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGGACTTAA-CCCGGATTTGGGAA
* * *
98664762 CTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTGGTAA
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAA
* * *
98664802 CTCGCACAAATGCCTTTGAGACTTAGCCCGGAT
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGAT
98664835 ACCATTCAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 60 0.95
41 3 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAA
Found at i:98666759 original size:80 final size:81
Alignment explanation
Indices: 98666661--98666839 Score: 261
Period size: 80 Copynumber: 2.2 Consensus size: 81
98666651 GCTCAATTGT
* * *
98666661 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
* *
98666726 AAC-TCGCACAAATGC
66 AACTTAGCACAAAAGC
* * * *
98666741 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
*
98666806 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
98666822 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
98666840 ACATCATTCG
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 60 0.69
81 27 0.31
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:98666828 original size:41 final size:40
Alignment explanation
Indices: 98666661--98666840 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
98666651 GCTCAATTGT
* * *
98666661 CTTCGGGACA-TAGCCCGG-TTATAGTAATTCGCACAATTGC
1 CTTCGGGA-ATTAACCCGGATT-TAGTAACTCGCACAAATGC
98666701 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
98666741 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
* * * *
98666781 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAACCCGGATTTAGTAAC-TCGCACAAATGC
* *
98666822 CTTCGGGACTTAGCCCGGA
1 CTTCGGGAATTAACCCGGA
98666841 CATCATTCGA
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 92 0.76
41 28 0.23
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:98671575 original size:68 final size:64
Alignment explanation
Indices: 98671458--98671608 Score: 164
Period size: 68 Copynumber: 2.3 Consensus size: 64
98671448 ATACAGATAG
* * *
98671458 TATGTAGCTAGGTCACATGTATGATGCTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGTATGATACTGAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
98671523 TA
63 TA
* **
98671525 TGATGTAGCTAGGTCGCATG-AGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGGG
1 T-ATGTAGCTAGGTCGCATGTA-TGATACTGA-GTGCACACCATGT-GTACAAGAGAGCTACGAC
98671587 ATA
62 ATA
98671590 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
98671609 CGTGGTTCCA
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
64 18 0.24
65 3 0.04
66 2 0.03
67 3 0.04
68 47 0.64
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGTATGATACTGAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:98674911 original size:27 final size:27
Alignment explanation
Indices: 98674881--98675140 Score: 313
Period size: 27 Copynumber: 9.6 Consensus size: 27
98674871 TTAGTTTACC
98674881 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
98674908 AAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
98674935 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
98674962 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
98674989 AAACTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
98675016 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
98675043 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
98675070 AAATTATCAAAAGACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
98675097 AAATTACCAAAATATCGCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
98675124 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
98675141 TCGACCTGTA
Statistics
Matches: 192, Mismatches: 41, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 192 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:98674956 original size:54 final size:54
Alignment explanation
Indices: 98674881--98675141 Score: 362
Period size: 54 Copynumber: 4.8 Consensus size: 54
98674871 TTAGTTTACC
*
98674881 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
98674935 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
98674989 AAACTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
98675043 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAAGACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGGTTTATA
* * * * *
98675097 AAATTACCAAAATATCGCTGATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
98675142 CGACCTGTAA
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 180 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:98675162 original size:26 final size:26
Alignment explanation
Indices: 98675124--98675193 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
98675114 CTGATTTGTG
*
98675124 AAATTACTGAAATACCCTCGACCTGT
1 AAATTACTAAAATACCCTCGACCTGT
* *
98675150 AAATTATTAAAATACCCTCGACTTGT
1 AAATTACTAAAATACCCTCGACCTGT
* *
98675176 AAATTACCAAAGTACCCT
1 AAATTACTAAAATACCCT
98675194 TGATTTACAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATTACTAAAATACCCTCGACCTGT
Found at i:98675245 original size:27 final size:27
Alignment explanation
Indices: 98674881--98675246 Score: 201
Period size: 27 Copynumber: 13.6 Consensus size: 27
98674871 TTAGTTTACC
* *
98674881 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * *
98674908 AAATTACTAAAATGCCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
98674935 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
98674962 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
98674989 AAACTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* *
98675016 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTATA
* *
98675043 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * *
98675070 AAATTATCAAAAGACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
98675097 AAATTACCAAAATATCGCT-GATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTATA
** ** *
98675124 AAATTACTGAAATACCCTCGACCTGT-
1 AAATTACCAAAATACCCTCGATTTATA
** * *
98675150 AAATTATTAAAATACCCTCGACTTGT-
1 AAATTACCAAAATACCCTCGATTTATA
* * *
98675176 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * **** *
98675203 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
98675230 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
98675247 CTGTAGGGTA
Statistics
Matches: 262, Mismatches: 64, Indels: 26
0.74 0.18 0.07
Matches are distributed among these distances:
26 46 0.18
27 213 0.81
28 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:98675261 original size:27 final size:27
Alignment explanation
Indices: 98675231--98675532 Score: 421
Period size: 27 Copynumber: 11.3 Consensus size: 27
98675221 CGATTTACAA
*
98675231 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
98675258 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
98675285 AATTA-CTAGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
98675312 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
98675339 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98675366 TATTACCGAAATACCCCTGTAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
98675393 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
98675420 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
98675447 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
98675474 AATTACTAAAATACCCCTG-AGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
98675500 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
98675526 AATTACC
1 AATTACC
98675533 ATTTTGCCCC
Statistics
Matches: 243, Mismatches: 29, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
25 4 0.02
26 28 0.12
27 209 0.86
28 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:98676011 original size:22 final size:22
Alignment explanation
Indices: 98675959--98676023 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
98675949 TTAAAGCCTT
* *
98675959 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
98675981 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
98676003 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
98676024 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:98676220 original size:27 final size:27
Alignment explanation
Indices: 98676182--98676283 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
98676172 ACTCTATTAA
*
98676182 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
*
98676209 GTGG-TTATGCCACAAATATCT-ATTCTG
1 GTGGCTT-TGCCAC-AATATCTGTTTCTG
*
98676236 GTGGCTTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* * *
98676263 GTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
98676284 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 9 0.14
27 47 0.73
28 8 0.12
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:98676465 original size:31 final size:31
Alignment explanation
Indices: 98676420--98676501 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
98676410 TTGCATTCAC
*
98676420 ATTCTGATTTTTGATTCTGTTACTTGATACTA
1 ATTCTGA-TTTTGATTCTGTTACATGATACTA
* * *
98676452 ATTTTGATTTTGATTCTATTACATGATACTG
1 ATTCTGATTTTGATTCTGTTACATGATACTA
*
98676483 ATTCTGATTCTGATTCTGT
1 ATTCTGATTTTGATTCTGT
98676502 CACCTAATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 37 0.86
32 6 0.14
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.52
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACATGATACTA
Found at i:98676484 original size:6 final size:6
Alignment explanation
Indices: 98676456--98676539 Score: 57
Period size: 6 Copynumber: 13.7 Consensus size: 6
98676446 ATACTAATTT
* * *
98676456 TGATTT TGATTC T-ATTAC ATGATAC TGATTC TGATTC TGATTC TG-TCACC
1 TGATTC TGATTC TGATT-C -TGATTC TGATTC TGATTC TGATTC TGAT--TC
* *
98676506 TAATTT TGATTC TGATTC TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
98676540 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 5 0.08
6 48 0.79
7 5 0.08
8 3 0.05
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:98683716 original size:48 final size:48
Alignment explanation
Indices: 98683645--98684126 Score: 784
Period size: 48 Copynumber: 10.0 Consensus size: 48
98683635 CAAGATAAAT
* * * *
98683645 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
98683693 ATATATATCTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
98683741 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
98683789 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
98683837 ATATGTATATTTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
98683885 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
98683933 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
98683981 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
98684029 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATCTGTTTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
98684077 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
98684125 AT
1 AT
98684127 GTGTGTATAT
Statistics
Matches: 409, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 409 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:98684317 original size:37 final size:37
Alignment explanation
Indices: 98684267--98684369 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
98684257 GGAAATATAT
98684267 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
98684304 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
98684341 TCCGAGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
98684370 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:98708107 original size:27 final size:27
Alignment explanation
Indices: 98708068--98708252 Score: 255
Period size: 27 Copynumber: 6.9 Consensus size: 27
98708058 TAAATTAATT
*
98708068 AAATGACTATTTTGCCCGTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
98708095 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
98708122 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
98708149 AAATGACTATTTTGCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * * *
98708176 AAATCATTGTTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
98708203 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
98708230 ATATGACTGTTTCGCCC-TATGTG
1 AAATGACTATTTTGCCCTTATGTG
98708253 ATGTATATAT
Statistics
Matches: 140, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 5 0.04
27 135 0.96
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:98708171 original size:81 final size:81
Alignment explanation
Indices: 98708068--98708252 Score: 291
Period size: 81 Copynumber: 2.3 Consensus size: 81
98708058 TAAATTAATT
* *
98708068 AAATGACTATTTTGCCCGTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATT
1 AAATGACTATTTTGCCCGTATGTGGTAAAATCACTGTTTTGCCCTTATATGGTAAAATGACTATT
98708133 TTGCCCTTATATGGTA
66 TTGCCCTTATATGGTA
** *
98708149 AAATGACTATTTTGCCTTTATGTGGTAAAATCATTGTTTTGCCCTTATATGGTAAAATGACTATT
1 AAATGACTATTTTGCCCGTATGTGGTAAAATCACTGTTTTGCCCTTATATGGTAAAATGACTATT
98708214 TTGCCCTTATATGGTA
66 TTGCCCTTATATGGTA
* * *
98708230 ATATGACTGTTTCGCCC-TATGTG
1 AAATGACTATTTTGCCCGTATGTG
98708253 ATGTATATAT
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 6 0.06
81 89 0.94
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.41
Consensus pattern (81 bp):
AAATGACTATTTTGCCCGTATGTGGTAAAATCACTGTTTTGCCCTTATATGGTAAAATGACTATT
TTGCCCTTATATGGTA
Found at i:98708612 original size:18 final size:18
Alignment explanation
Indices: 98708567--98708613 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
98708557 GACTTGTATT
*
98708567 CTGTTACTGCACTGATTA
1 CTGTTACTGTACTGATTA
98708585 CTGTTACTGTACT-ATTTA
1 CTGTTACTGTACTGA-TTA
98708603 CTGTTACTGTA
1 CTGTTACTGTA
98708614 TTGGGCCAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (18 bp):
CTGTTACTGTACTGATTA
Found at i:98709885 original size:28 final size:28
Alignment explanation
Indices: 98709679--98709887 Score: 116
Period size: 28 Copynumber: 7.5 Consensus size: 28
98709669 CCAATAAATA
* * * * *
98709679 GAAGCCTTTTTGGTGATCTTTGATGAAT
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* ** * * * *
98709707 GAAGCCTTTGTGATGACCCCTGATGATG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* **
98709735 GAAGCCATTATGATGATCTCTAATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* * * *
98709763 GAAGCCTTTGTGGCAACCCCTAATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
* *
98709791 GAAGCCTTTGA-GGCGATC-CTTGATAAAG
1 GAAGCCTTT-ATGGCGATCTC-TAATGAAG
* * * * * *
98709819 AAAACCTTTGTGGTGATCTTTGATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
**
98709847 GTTGCCTTTATGGCGATCTCTAATGAAG
1 GAAGCCTTTATGGCGATCTCTAATGAAG
*
98709875 GAAGCCATTATGG
1 GAAGCCTTTATGG
98709888 AAACATTTGA
Statistics
Matches: 135, Mismatches: 42, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
27 1 0.01
28 134 0.99
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (28 bp):
GAAGCCTTTATGGCGATCTCTAATGAAG
Found at i:98709969 original size:17 final size:17
Alignment explanation
Indices: 98709947--98709981 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
98709937 GCAGCTATCA
98709947 TTTGAAGGGAATGCCTT
1 TTTGAAGGGAATGCCTT
98709964 TTTGAAGGGAATGCCTT
1 TTTGAAGGGAATGCCTT
98709981 T
1 T
98709982 GTGGTAAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.11, G:0.29, T:0.37
Consensus pattern (17 bp):
TTTGAAGGGAATGCCTT
Found at i:98710340 original size:96 final size:96
Alignment explanation
Indices: 98710204--98710396 Score: 323
Period size: 96 Copynumber: 2.0 Consensus size: 96
98710194 CTACGACTAT
* * *
98710204 ATGGTAATAGATAAGAAATCATAGAGAAGGTTAACAAAGAACATAAGCTATGGGCCGATAGGGTG
1 ATGGTAATAGATAAGAAATCATAGAAAAGGTTAACAAAGAACATAAGCTATGGACCGATAGGATG
98710269 GAAAGAAATGTATAATAACTATGACATGAAG
66 GAAAGAAATGTATAATAACTATGACATGAAG
* * *
98710300 ATGGTAATGGATAAGAAATCATATAAAAGGTTAACGAAGAACATAAGCTATGGACCGATAGGATG
1 ATGGTAATAGATAAGAAATCATAGAAAAGGTTAACAAAGAACATAAGCTATGGACCGATAGGATG
*
98710365 GAAAGAAATGTATAATGACTATGACATGAAG
66 GAAAGAAATGTATAATAACTATGACATGAAG
98710396 A
1 A
98710397 ATGAGAGTCT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 90 1.00
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.21
Consensus pattern (96 bp):
ATGGTAATAGATAAGAAATCATAGAAAAGGTTAACAAAGAACATAAGCTATGGACCGATAGGATG
GAAAGAAATGTATAATAACTATGACATGAAG
Found at i:98723841 original size:25 final size:25
Alignment explanation
Indices: 98723813--98723861 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
98723803 CTGTTTTGGA
*
98723813 TAGTATATCCTGAAACTACTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
98723838 TAGTATATATTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
98723862 ATAGACCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:98726381 original size:40 final size:40
Alignment explanation
Indices: 98726331--98726421 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
98726321 TCGGTATCGA
** *
98726331 ACACTTAGTGCCTCA-TATAGCTGAAGTTATTCCAATTCAC
1 ACACTTAGTGCCT-ATTATAGCTGAAACTATTCCAAATCAC
* *
98726371 ACACTTAGTG-CTATTTATAGCTGAAACTATTTCAAATCGC
1 ACACTTAGTGCCTA-TTATAGCTGAAACTATTCCAAATCAC
98726411 ACACTTAGTGC
1 ACACTTAGTGC
98726422 TGAACATAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.05
40 40 0.93
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (40 bp):
ACACTTAGTGCCTATTATAGCTGAAACTATTCCAAATCAC
Found at i:98726422 original size:40 final size:40
Alignment explanation
Indices: 98726346--98726422 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
98726336 TAGTGCCTCA
** *
98726346 TATAGCTGAAGTTATTCCAATTCACACACTTAGTGCTATT
1 TATAGCTGAAACTATTCCAAATCACACACTTAGTGCTATT
* *
98726386 TATAGCTGAAACTATTTCAAATCGCACACTTAGTGCT
1 TATAGCTGAAACTATTCCAAATCACACACTTAGTGCT
98726423 GAACATAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (40 bp):
TATAGCTGAAACTATTCCAAATCACACACTTAGTGCTATT
Found at i:98734919 original size:22 final size:22
Alignment explanation
Indices: 98734888--98734944 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
98734878 TTATTTTATG
98734888 TTTTTAATTTTTATTA-AAATTA
1 TTTTT-ATTTTTATTAGAAATTA
**
98734910 CTTTTTATTTTTATTAGATTTTA
1 -TTTTTATTTTTATTAGAAATTA
98734933 TTTTTATTTTTA
1 TTTTTATTTTTA
98734945 ATTATCAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 22 0.71
23 9 0.29
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTTTATTTTTATTAGAAATTA
Found at i:98734925 original size:16 final size:16
Alignment explanation
Indices: 98734906--98734940 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
98734896 TTTTATTAAA
*
98734906 ATTACTTTTTATTTTT
1 ATTACATTTTATTTTT
*
98734922 ATTAGATTTTATTTTT
1 ATTACATTTTATTTTT
98734938 ATT
1 ATT
98734941 TTTAATTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (16 bp):
ATTACATTTTATTTTT
Found at i:98749579 original size:40 final size:39
Alignment explanation
Indices: 98749534--98749741 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
98749524 CGGAATACAA
*
98749534 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
98749574 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
98749614 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
98749654 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
98749694 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
98749734 CCGGATAT
1 CCGGATAT
98749742 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:98749674 original size:80 final size:80
Alignment explanation
Indices: 98749534--98749740 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
98749524 CGGAATACAA
* * *
98749534 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
98749598 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
98749614 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
98749678 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
98749694 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
98749741 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:98757720 original size:80 final size:79
Alignment explanation
Indices: 98757580--98757785 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 79
98757570 CGGAATACAA
* * *
98757580 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
98757644 GCCTTCGGGTATTAGC
65 GCCTTC-GGTATTAAC
* * **
98757660 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
98757724 GCCTTCGGTCTTAAC
65 GCCTTCGGTATTAAC
** * ** * *
98757739 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
98757786 TCATTCAATT
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
79 48 0.45
80 56 0.53
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGTATTAAC
Found at i:98757755 original size:39 final size:40
Alignment explanation
Indices: 98757580--98757786 Score: 197
Period size: 40 Copynumber: 5.2 Consensus size: 40
98757570 CGGAATACAA
*
98757580 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGC
* * * * *
98757620 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* *
98757660 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* ** *
98757700 CCGGATGTGGTC-ACTAGCAC-AATGGCCTTC-GGTCTTAAC
1 CCGGATAT-AACAACTAGCACGAAT-GCCTTCGGGTCTTAGC
** ** * *
98757739 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
98757779 CCGGATAT
1 CCGGATAT
98757787 CATTCAATTG
Statistics
Matches: 138, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
39 30 0.22
40 107 0.78
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:98758875 original size:142 final size:140
Alignment explanation
Indices: 98758604--98758896 Score: 534
Period size: 142 Copynumber: 2.1 Consensus size: 140
98758594 TGAGTTAAAT
*
98758604 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
98758669 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGGTGTG
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--GTGTG
98758734 TGTGCATGACTA
129 TGTGCATGACTA
98758746 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
98758811 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTT-TGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA-GTGTGT
*
98758875 GTGCATGAGTA
130 GTGCATGACTA
98758886 TTCGGCCATGC
1 TTCGGCCATGC
98758897 TATAGAATTT
Statistics
Matches: 148, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
140 27 0.18
141 22 0.15
142 99 0.67
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.39
Consensus pattern (140 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTAGTGTGTG
TGCATGACTA
Found at i:98759608 original size:27 final size:28
Alignment explanation
Indices: 98759548--98759628 Score: 139
Period size: 28 Copynumber: 2.9 Consensus size: 28
98759538 GTGACGAGAT
98759548 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
98759577 T-GCACTAAGTGTGCATGCT-GAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
98759603 TGGCACTAAGTGTGCATGCTGGAAAA
1 TGGCACTAAGTGTGCATGCTGGAAAA
98759629 AAATACGGCA
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
26 4 0.08
27 22 0.44
28 23 0.46
29 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:98762645 original size:47 final size:47
Alignment explanation
Indices: 98762587--98762814 Score: 181
Period size: 47 Copynumber: 4.7 Consensus size: 47
98762577 TATAAGAGTC
* * *
98762587 AGTGTATGACCATGTCTGGGACATGGATCGGCGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCATTGATATGTGTGCT
* * ** * *
98762634 AGTGTAAGACCATGTTTGGGACATGCATCGGCCTCAATATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCATTGATATGTGTGCT
* * * *
98762681 AGTGTAAAACCATGTTTGGAACATAGCATCAGCATTGTTATATGTGT-C-
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTG--ATATGTGTGCT
* ** * * *
98762729 AGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGA--TATGTGTGCT
* * *
98762779 AATGTAAGACCTTGTCTGAGACATGGCATCGGCATT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCATT
98762815 TTACCCTTTT
Statistics
Matches: 142, Mismatches: 32, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
46 1 0.01
47 61 0.43
48 42 0.30
49 2 0.01
50 36 0.25
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCATTGATATGTGTGCT
Found at i:98766636 original size:48 final size:47
Alignment explanation
Indices: 98766578--98766723 Score: 188
Period size: 48 Copynumber: 3.0 Consensus size: 47
98766568 ATATACACAC
* *
98766578 ATCTCCTACATATTGCTCATTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATT-CTCATTAGCCATTCGGCTTTACCACATATACAT
*
98766626 ATCTCATACATATT-TCATATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTCTC--ATTAGCCATTCGGCTTTACCACATATACAT
* *
98766674 GTCTCATACATATT-TCATGTTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTCTCA--TTAGCCATTCGGCTTTACCACATATACAT
98766722 AT
1 AT
98766724 ATTTATCTTG
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
46 3 0.03
48 84 0.97
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (47 bp):
ATCTCATACATATTCTCATTAGCCATTCGGCTTTACCACATATACAT
Found at i:98767914 original size:2 final size:2
Alignment explanation
Indices: 98767881--98767905 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98767871 TACATAAGGC
98767881 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
98767906 CCTATATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98770421 original size:47 final size:47
Alignment explanation
Indices: 98770305--98770648 Score: 530
Period size: 47 Copynumber: 7.4 Consensus size: 47
98770295 ATACAAGATA
98770305 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
98770351 -GTATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * *
98770397 TATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * * *
98770444 TGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
98770491 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * *
98770538 TGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
98770585 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
98770632 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
98770649 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
45 43 0.16
47 233 0.84
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
Found at i:98773137 original size:38 final size:38
Alignment explanation
Indices: 98773073--98773147 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
98773063 AATCCGAGTT
*
98773073 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
98773111 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
98773148 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:98773600 original size:40 final size:40
Alignment explanation
Indices: 98773201--98773588 Score: 616
Period size: 40 Copynumber: 9.7 Consensus size: 40
98773191 AGGTCTCGAC
* *
98773201 GATG-ATCCGGGCTAAGTCCCGAAAAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
98773240 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
98773280 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
98773320 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
98773360 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
98773400 GATGTATCCGGGCTAAGTCCCGAAGCGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
98773440 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
98773480 GATGTATCCGGTCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** * *
98773520 GATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
98773560 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
98773589 ATCATGCTGG
Statistics
Matches: 324, Mismatches: 24, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 4 0.01
40 320 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:98777082 original size:47 final size:47
Alignment explanation
Indices: 98776955--98777389 Score: 692
Period size: 47 Copynumber: 9.3 Consensus size: 47
98776945 ACAAGATATG
*
98776955 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98777002 TATATGTGAT-AGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
98777048 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
98777095 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
98777142 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
98777189 TATATGTGATAGGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
98777236 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
98777283 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
98777330 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
98777377 TAAATGTGATAAG
1 TATATGTGATAAG
98777390 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 15, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
46 45 0.12
47 327 0.88
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:98781518 original size:28 final size:27
Alignment explanation
Indices: 98781477--98781576 Score: 83
Period size: 28 Copynumber: 3.6 Consensus size: 27
98781467 GAAACACATT
* * *
98781477 TCGCATACACAGTGCCCACTGACTGATT
1 TCGCACACATAGTGCCCACT-ACTGATC
* * ** *
98781505 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGC-CCACTACTGATC
98781533 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCC-C-ACTACTGATC
*
98781562 TGGCACACATAGTGC
1 TCGCACACATAGTGC
98781577 TCAGTTTAAG
Statistics
Matches: 55, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
27 1 0.02
28 31 0.56
29 23 0.42
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (27 bp):
TCGCACACATAGTGCCCACTACTGATC
Found at i:98781568 original size:57 final size:57
Alignment explanation
Indices: 98781477--98781606 Score: 158
Period size: 57 Copynumber: 2.3 Consensus size: 57
98781467 GAAACACATT
* *
98781477 TCGCATACACAGTGCC-CACTGACTGATTTCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACACAGTGCCTCACTGACTGATCTCGCACACATAGTGCTCAG-TTAAAGAAC
* * * *
98781533 TCGCACACATAGTGCCTCAACT-ACTGATCTGGCACACATAGTGCTCAGTTTAAGAGC
1 TCGCACACACAGTGCCTC-ACTGACTGATCTCGCACACATAGTGCTCAGTTAAAGAAC
*
98781590 TTGCACACACAGTGCCT
1 TCGCACACACAGTGCCT
98781607 TATAATTCCA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
56 14 0.22
57 45 0.71
58 4 0.06
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCACTGACTGATCTCGCACACATAGTGCTCAGTTAAAGAAC
Found at i:98781596 original size:28 final size:28
Alignment explanation
Indices: 98781505--98781604 Score: 78
Period size: 28 Copynumber: 3.5 Consensus size: 28
98781495 CTGACTGATT
*
98781505 TCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACATAGTGCTCAG-TTTAAGAAC
** * *
98781533 TCGCACACATAGTGCCTCA-ACTACTGATC
1 TCGCACACATAGTG-CTCAGTTTA-AGAAC
* *
98781562 TGGCACACATAGTGCTCAGTTTAAGAGC
1 TCGCACACATAGTGCTCAGTTTAAGAAC
* *
98781590 TTGCACACACAGTGC
1 TCGCACACATAGTGC
98781605 CTTATAATTC
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
28 35 0.62
29 21 0.38
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCAGTTTAAGAAC
Found at i:98781682 original size:40 final size:40
Alignment explanation
Indices: 98781616--98781970 Score: 588
Period size: 40 Copynumber: 8.9 Consensus size: 40
98781606 TTATAATTCC
* * *
98781616 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATGTCACC
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
*
98781655 AGCACGAATGCTCTTCGGGACTTAGCCCGAATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
98781695 AGCACGAATGCTCTTTGGGACTTAGCCCGGATATATTACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
98781735 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
98781775 AGCACGAATGCTCTTCGGGACTTAGCCTGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
98781815 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
98781855 AGCACGAATGCTCTTCGGGACTTAGACCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
98781895 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATGTCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
98781935 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
98781971 ATAACTCTCA
Statistics
Matches: 296, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.04
40 283 0.96
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:98784835 original size:40 final size:40
Alignment explanation
Indices: 98784776--98784963 Score: 148
Period size: 40 Copynumber: 4.7 Consensus size: 40
98784766 ATAACCACAA
* * * ** * *
98784776 GCACAATTGCCTTCAGGTCTTAACCCGGATTTGGTATCTT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGACAACTC
*
98784816 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGACAACTC
* * * * *
98784856 GCACGAATGCCTTCGGGTCTTAGCCCAGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGA-CAACTC
* * * *
98784896 GCATAAATGCCTTCGGGACTTAGCCCGGATAT-ATTC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGA--CAACTC
* * *
98784936 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
98784964 GTATCATTCA
Statistics
Matches: 130, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATGACAACTC
Found at i:98786780 original size:48 final size:48
Alignment explanation
Indices: 98786709--98786836 Score: 220
Period size: 48 Copynumber: 2.7 Consensus size: 48
98786699 GGCTGTCACA
98786709 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAT
* *
98786757 ATTAGCCATTCGACTTTACCACATATACATGTCTCATACATATTTCAT
1 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAT
* *
98786805 GTTAGCCATTCGGCTTTACCACATATATATAT
1 ATTAGCCATTCGGCTTTACCACATATACATAT
98786837 TTATCTTGTA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAT
Found at i:98794543 original size:14 final size:14
Alignment explanation
Indices: 98794524--98794563 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
98794514 CATAAATCAC
98794524 TTTTTTTTT-AAAA
1 TTTTTTTTTCAAAA
**
98794537 TTTTTTTTTCGGAA
1 TTTTTTTTTCAAAA
98794551 TTTTTTTTTCAAA
1 TTTTTTTTTCAAA
98794564 CTTGTGTAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (14 bp):
TTTTTTTTTCAAAA
Found at i:98797825 original size:45 final size:45
Alignment explanation
Indices: 98797733--98797953 Score: 253
Period size: 45 Copynumber: 4.8 Consensus size: 45
98797723 TGATATGTGT
* *
98797733 GCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCGTTGATTGAGA
1 GCTAGTGTAAGACCATGT-T-GGACATGGCATCAGCATTGATTGAGA
* * *
98797780 GCTAGTGTCAGACCATGTTGGATATGGCATCGGCATTGATTGAGA
1 GCTAGTGTAAGACCATGTTGGACATGGCATCAGCATTGATTGAGA
* * ** *
98797825 GCCAGCGTAAGACCATGTTGGACATGGCATCAGTGTTGATTGAAA
1 GCTAGTGTAAGACCATGTTGGACATGGCATCAGCATTGATTGAGA
* * * * *
98797870 GCCAGTGTAAGACCATGTTGGACATGGCATCGGTATGGAGATGAGA
1 GCTAGTGTAAGACCATGTTGGACATGGCATCAGCATTGA-TTGAGA
*
98797916 GCTAGTGTAAGACCATGTCCGGGACATGGCATCAGCAT
1 GCTAGTGTAAGACCATGT--TGGACATGGCATCAGCAT
98797954 CTTACCCTAT
Statistics
Matches: 148, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
45 94 0.64
46 22 0.15
47 17 0.11
48 15 0.10
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACCATGTTGGACATGGCATCAGCATTGATTGAGA
Found at i:98797863 original size:90 final size:92
Alignment explanation
Indices: 98797739--98797951 Score: 286
Period size: 90 Copynumber: 2.3 Consensus size: 92
98797729 GTGTGCTAGT
* * * * *
98797739 GTAAGACCATGTCTGGGACATAGCATCAGCGTTGATTGAGAGCTAGTGTCAGACCATGTTGGATA
1 GTAAGACCATGTCT-GGACATGGCATCAGCGTTGATTGAAAGCCAGTGTAAGACCATGTTGGACA
* *
98797804 TGGCATCGGCATTGA-TTGAGAGCCAGC
65 TGGCATCGGCATGGAGATGAGAGCCAGC
*
98797831 GTAAGACCATGT-TGGACATGGCATCAGTGTTGATTGAAAGCCAGTGTAAGACCATGTTGGACAT
1 GTAAGACCATGTCTGGACATGGCATCAGCGTTGATTGAAAGCCAGTGTAAGACCATGTTGGACAT
* * *
98797895 GGCATCGGTATGGAGATGAGAGCTAGT
66 GGCATCGGCATGGAGATGAGAGCCAGC
*
98797922 GTAAGACCATGTCCGGGACATGGCATCAGC
1 GTAAGACCATGT-CTGGACATGGCATCAGC
98797952 ATCTTACCCT
Statistics
Matches: 105, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
90 57 0.54
91 22 0.21
92 12 0.11
93 14 0.13
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (92 bp):
GTAAGACCATGTCTGGACATGGCATCAGCGTTGATTGAAAGCCAGTGTAAGACCATGTTGGACAT
GGCATCGGCATGGAGATGAGAGCCAGC
Found at i:98801678 original size:40 final size:40
Alignment explanation
Indices: 98801535--98801818 Score: 373
Period size: 40 Copynumber: 7.2 Consensus size: 40
98801525 TGAATGATAC
* * *
98801535 CCGGGCTAAGCCCCGAAGGCATTTATGCTA--TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
98801574 CCGGGTTAA-ACCC-AAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
98801612 CCGGGTTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
98801651 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
98801691 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
98801731 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
98801771 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
98801811 CC-GGCTAA
1 CCGGGCTAA
98801819 ATTCCGAAGA
Statistics
Matches: 217, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
37 13 0.06
38 19 0.09
39 50 0.23
40 135 0.62
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:98801739 original size:80 final size:80
Alignment explanation
Indices: 98801535--98801818 Score: 418
Period size: 80 Copynumber: 3.6 Consensus size: 80
98801525 TGAATGATAC
* * * * *
98801535 CCGGGCTAAGCCCCGAAGGCATTTATGCTA--TGATTATATCCGGGTTAA-ACCC-AAGGCATTT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
98801596 GTGCGAGTTGCTATAT
65 GTGCGAGTTGCTATAT
98801612 CCGGGTTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
*
98801676 TGCAAGTTGCTATAT
66 TGCGAGTTGCTATAT
98801691 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
*
98801756 TGCGAGTTGCTATAC
66 TGCGAGTTGCTATAT
* ** *
98801771 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
98801819 ATTCCGAAGA
Statistics
Matches: 190, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
76 16 0.08
77 23 0.12
78 6 0.03
79 41 0.22
80 104 0.55
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAT
Found at i:98809756 original size:40 final size:40
Alignment explanation
Indices: 98809701--98809904 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
98809691 TGAATGATAC
* * * *
98809701 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
98809741 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
98809781 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
98809821 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
98809861 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
98809901 CCGG
1 CCGG
98809905 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 145 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:98809834 original size:80 final size:80
Alignment explanation
Indices: 98809697--98809908 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
98809687 CAATTGAATG
* * * *
98809697 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
98809761 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
98809777 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
98809842 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
98809857 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
98809909 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.05
80 112 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:98830565 original size:14 final size:14
Alignment explanation
Indices: 98830546--98830584 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
98830536 CAAACAACTG
98830546 ATATCATTATTGAC
1 ATATCATTATTGAC
98830560 ATATCATTATTGAC
1 ATATCATTATTGAC
*
98830574 ATACCATTATT
1 ATATCATTATT
98830585 TTACCTGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (14 bp):
ATATCATTATTGAC
Found at i:98834233 original size:62 final size:60
Alignment explanation
Indices: 98834094--98834243 Score: 176
Period size: 60 Copynumber: 2.5 Consensus size: 60
98834084 GAATGGGTTA
* * * *
98834094 TTTTTTTAACTACGGTTTATAGTTTGGGGAAACGAAAATATTAAATTTTGAAAAAAAAGT
1 TTTTTTTAACTACGGTTTATAATTTGGGGAAACAAAAATATAAAAATTTGAAAAAAAAGT
* * ***
98834154 TTTTTTTAATTACGGTTTATAATTTGGGTAAACAAAAATAATAAAAATTTGAAAAGGGA-T
1 TTTTTTTAACTACGGTTTATAATTTGGGGAAACAAAAAT-ATAAAAATTTGAAAAAAAAGT
*
98834214 TTTTTTTAAAACTACGGTTTAAAATTTGGG
1 TTTTTTT--AACTACGGTTTATAATTTGGG
98834244 ACTAGAAATT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
60 43 0.57
61 14 0.18
62 19 0.25
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.40
Consensus pattern (60 bp):
TTTTTTTAACTACGGTTTATAATTTGGGGAAACAAAAATATAAAAATTTGAAAAAAAAGT
Found at i:98839607 original size:34 final size:31
Alignment explanation
Indices: 98839543--98839607 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 31
98839533 AATGTTGAAG
*
98839543 AGTCTTCCAATGTGAACAAGGTGAACCGAAT
1 AGTCTTCCAATGTGAACAAGGTGAAACGAAT
98839574 AGTCTTGCC-ATGTGAACATAGGTGTGAAACGAAT
1 AGTCTT-CCAATGTGAACA-A-G-GTGAAACGAAT
98839608 TAAGGAGAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 15 0.52
32 3 0.10
33 1 0.03
34 10 0.34
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
AGTCTTCCAATGTGAACAAGGTGAAACGAAT
Found at i:98843860 original size:40 final size:40
Alignment explanation
Indices: 98843800--98844006 Score: 280
Period size: 40 Copynumber: 5.2 Consensus size: 40
98843790 CCTCTGGAAT
* *
98843800 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
98843839 TTAGCCC-GATTATAGTAACTTGCACAAATGCCTTTGGGAC
1 TTAGCCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGAC
* *
98843879 TTAGCCCGGATATAGTAACTCGCACAATTGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
98843919 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
98843958 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
98843998 TTAGCCCGG
1 TTAGCCCGG
98844007 TTATCATCCG
Statistics
Matches: 154, Mismatches: 8, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
38 1 0.01
39 42 0.27
40 109 0.71
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:98847177 original size:22 final size:22
Alignment explanation
Indices: 98847152--98847227 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
98847142 AAGTGTATAT
98847152 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
98847174 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
98847198 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
98847221 ATGTGAT
1 ATGTGAT
98847228 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:98847215 original size:25 final size:25
Alignment explanation
Indices: 98847144--98847216 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
98847134 GAATGTGAAA
98847144 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
98847169 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
98847191 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
98847216 G
1 G
98847217 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:98847263 original size:46 final size:47
Alignment explanation
Indices: 98847130--98847301 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
98847120 ATGATGAAAT
98847130 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
98847177 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
98847224 TGATGGATGTG-AAGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
98847270 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
98847302 TCCCGAAGGG
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
46 43 0.37
47 74 0.63
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:98847263 original size:93 final size:94
Alignment explanation
Indices: 98847130--98847301 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 94
98847120 ATGATGAAAT
* *
98847130 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAATGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGT
*
98847195 ATATATGTGATAAGGCCGAATGGCCGATG
66 ATAAATGTGATAAGGCCGAATGGCCGATG
* *
98847224 TGATGGATGTG-AAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGT
98847288 ATAAATGTGATAAG
66 ATAAATGTGATAAG
98847302 TCCCGAAGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 63 0.86
94 10 0.14
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (94 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGT
ATAAATGTGATAAGGCCGAATGGCCGATG
Found at i:98851206 original size:29 final size:29
Alignment explanation
Indices: 98851173--98851246 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
98851163 CCTTCGAGCT
98851173 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
98851202 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
98851231 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
98851247 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:98851207 original size:58 final size:58
Alignment explanation
Indices: 98851114--98851246 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
98851104 ATACTCGATT
* * * * *
98851114 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
98851172 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
98851230 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
98851247 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:98856508 original size:40 final size:40
Alignment explanation
Indices: 98856450--98856652 Score: 275
Period size: 40 Copynumber: 5.1 Consensus size: 40
98856440 TGAATGATAC
* * * *
98856450 CCGGGCTAAG-CCCCAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
98856489 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
98856529 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
98856569 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
98856609 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
98856649 CCGG
1 CCGG
98856653 CTAAATTCCG
Statistics
Matches: 146, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 9 0.06
40 135 0.92
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:98856597 original size:80 final size:80
Alignment explanation
Indices: 98856446--98856656 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
98856436 CAATTGAATG
* * * *
98856446 ATACCCGGGCTAAG-CCCCAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
98856509 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
98856525 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
98856590 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
98856605 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
98856657 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 18 0.15
80 99 0.83
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Done.