Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 323 of 770
Found at i:98868183 original size:43 final size:43
Alignment explanation
Indices: 98868122--98868236 Score: 178
Period size: 43 Copynumber: 2.7 Consensus size: 43
98868112 AACGAACTCA
*
98868122 CACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATCG
* *
98868165 CACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATCG
98868208 CACACTTAGTGCC-ATTATATTAAACCGAA
1 CACACTTAGTGCCAATTA-ATT-AACCGAA
98868237 CTTATATCGG
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.06
43 56 0.86
44 5 0.08
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (43 bp):
CACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTATCG
Found at i:98876158 original size:27 final size:27
Alignment explanation
Indices: 98876114--98876268 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
98876104 CACTAAAATG
*
98876114 CCCTCGATTTGTAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
98876141 CCCTCGATTTATACAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
98876168 CCTTCGAATTAGAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
**
98876195 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * **
98876222 CCCTTGATTTACAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
98876249 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
98876269 TAAAATACCC
Statistics
Matches: 110, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:98876269 original size:54 final size:54
Alignment explanation
Indices: 98876126--98876296 Score: 200
Period size: 54 Copynumber: 3.2 Consensus size: 54
98876116 CTCGATTTGT
* ** * *
98876126 AGAATTACCGTTTTACCCTCGATTTATACAATTACCGTTTTA-CCTTCGAATTAG
1 AGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTT-GATTTAC
*
98876180 AGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTAC
** * *** *
98876234 AGAATTATTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTAC
1 AGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTAC
*
98876288 AAAATTACC
1 AGAATTACC
98876297 AAAATACCCT
Statistics
Matches: 100, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 96 0.96
55 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.39
Consensus pattern (54 bp):
AGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTAC
Found at i:98876278 original size:81 final size:81
Alignment explanation
Indices: 98876094--98876297 Score: 192
Period size: 81 Copynumber: 2.5 Consensus size: 81
98876084 AATACTTTAG
* * * * * *
98876094 TTTACCAAATCACTAAAATGCCCTCGATTTGTAGAATTACCGTTTTACCCTCGATTTATACAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACACAATT
*
98876159 ACCGTTTTACCTTCGA
66 ACCGTTTTACCCTCGA
* * * ***** * * *
98876175 ATTAGAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACACAATT
**
98876240 ATTGTTTTACCCTCGA
66 ACCGTTTTACCCTCGA
* * * *
98876256 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCA
98876298 AAATACCCTG
Statistics
Matches: 90, Mismatches: 33, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.38
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACACAATT
ACCGTTTTACCCTCGA
Found at i:98876305 original size:54 final size:53
Alignment explanation
Indices: 98876247--98876503 Score: 209
Period size: 54 Copynumber: 4.7 Consensus size: 53
98876237 ATTATTGTTT
* * *
98876247 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCT-GGTTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
** * *
98876301 TACCCTGGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTAAACTTACCAAAA
1 TACCCTGGTTTACAAAATTACCAAAATACC-CTTGGTTTGCAAAATTACCAAAA
* * *** *
98876354 TACCACTGGTTTGA-GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTGGTTT-ACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
* * *
98876408 TACCACTGATTTACAAAATTA-CATAAATACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACC-CTGGTTTACAAAATTACCA-AAATACCCTTG-GTTTGC--AAAATTACCA-AAA
* **
98876464 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTG
1 TACC-CTGGTTTACAAAATTACCAAAATACCCTTGGTTTG
98876504 TAGATTTACC
Statistics
Matches: 164, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
53 45 0.27
54 72 0.44
55 7 0.04
56 40 0.24
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TACCCTGGTTTACAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
Found at i:98876436 original size:81 final size:80
Alignment explanation
Indices: 98876254--98876442 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 80
98876244 TTTTACCCTC
**
98876254 GATTTACAAAATTAC-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTTTGTAAAA
1 GATTTACAAAATTACAT-AAATACCCTTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAA
98876318 TTACCAAAATACCACT
65 TTACCAAAATACCACT
* ** * * *
98876334 GGTTTGTAAACTTACCA-AAATACCAC-TGGTTTGA-GAAATTACCGAAATACCCTCAATTTGTA
1 GATTTACAAAATTA-CATAAATACC-CTTGGTTT-ACAAAATTACCAAAATACCCT-AATTTGTA
98876396 AAATTACCAAAATACCACT
62 AAATTACCAAAATACCACT
98876415 GATTTACAAAATTACATAAATACCCTTG
1 GATTTACAAAATTACATAAATACCCTTG
98876443 ACTTTCTAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
80 43 0.48
81 47 0.52
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (80 bp):
GATTTACAAAATTACATAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAAT
TACCAAAATACCACT
Found at i:98876490 original size:27 final size:27
Alignment explanation
Indices: 98876256--98876502 Score: 171
Period size: 27 Copynumber: 9.1 Consensus size: 27
98876246 TTACCCTCGA
* *
98876256 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCATTGG
*
98876283 TTTACAAAATTACCAAAATACC-CTGG
1 TTTACAAAATTACCAAAATACCATTGG
** *
98876309 TTTGTAAAATTACCAAAATACCACTGG
1 TTTACAAAATTACCAAAATACCATTGG
** * *
98876336 TTTGTAAACTTACCAAAATACCACTGG
1 TTTACAAAATTACCAAAATACCATTGG
* * * ***
98876363 TTTGA-GAAATTACCGAAATACCCTCAA
1 TTT-ACAAAATTACCAAAATACCATTGG
** * *
98876390 TTTGTAAAATTACCAAAATACCACTGA
1 TTTACAAAATTACCAAAATACCATTGG
* *
98876417 TTTACAAAATTA-CATAAATACCCTTGAC
1 TTTACAAAATTACCA-AAATACCATTG-G
*
98876445 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACCA-AAATACCATTGG
** *
98876473 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCATTGG
98876500 TTT
1 TTT
98876503 GTAGATTTAC
Statistics
Matches: 179, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
26 25 0.14
27 128 0.72
28 7 0.04
29 19 0.11
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCATTGG
Found at i:98877822 original size:25 final size:24
Alignment explanation
Indices: 98877781--98877828 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
98877771 TTATAATATG
* *
98877781 AAAATGACCGTTTTACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
98877805 AAAACTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
98877829 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:98877879 original size:9 final size:9
Alignment explanation
Indices: 98877867--98877923 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
98877857 TTTGATAAAC
98877867 ATGATATGT
1 ATGATATGT
*
98877876 ATGATATGCAC
1 ATGATATG--T
*
98877887 ATGACATGT
1 ATGATATGT
*
98877896 ATGATATGCAC
1 ATGATATG--T
98877907 ATGATATGT
1 ATGATATGT
98877916 ATGATATG
1 ATGATATG
98877924 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:98877890 original size:20 final size:20
Alignment explanation
Indices: 98877865--98877935 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
98877855 ATTTTGATAA
98877865 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
98877885 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
98877905 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
98877925 ACATGAGATGT
1 ACATGATATGT
98877936 TCGTAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:98877912 original size:11 final size:11
Alignment explanation
Indices: 98877876--98877930 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98877866 CATGATATGT
98877876 ATGATATGCAC
1 ATGATATGCAC
* *
98877887 ATGACATG--T
1 ATGATATGCAC
98877896 ATGATATGCAC
1 ATGATATGCAC
*
98877907 ATGATATG--T
1 ATGATATGCAC
98877916 ATGATATGCAC
1 ATGATATGCAC
98877927 ATGA
1 ATGA
98877931 GATGTTCGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:98878012 original size:23 final size:24
Alignment explanation
Indices: 98877982--98878199 Score: 311
Period size: 25 Copynumber: 9.0 Consensus size: 24
98877972 AGGAAGTGCA
98877982 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
98878005 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
98878028 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
98878051 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
98878076 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
98878101 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
98878126 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
98878151 AAAGGGCTTATGCCCTAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
98878175 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
98878200 GATAAAGTAG
Statistics
Matches: 184, Mismatches: 5, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
23 68 0.37
24 11 0.06
25 104 0.57
26 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:98878084 original size:25 final size:25
Alignment explanation
Indices: 98877982--98878171 Score: 320
Period size: 25 Copynumber: 7.8 Consensus size: 25
98877972 AGGAAGTGCA
98877982 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
98878005 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
98878028 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
98878051 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
98878076 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
98878101 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
98878126 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
98878151 AAAGGGCTTATGCCCTAGTTA
1 AAAGGGCTTATGCCCCAGTTA
98878172 CTAAAAGAGG
Statistics
Matches: 162, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 68 0.42
25 94 0.58
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:98878427 original size:31 final size:31
Alignment explanation
Indices: 98878392--98878455 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
98878382 GTTTACAGTT
*
98878392 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
98878423 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
98878454 AA
1 AA
98878456 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:98882062 original size:6 final size:6
Alignment explanation
Indices: 98882041--98882108 Score: 75
Period size: 6 Copynumber: 11.2 Consensus size: 6
98882031 TCCCAGAACT
* * * *
98882041 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
98882090 AGAATC AGAATC AGAATC A
1 AGAATC AGAATC AGAATC A
98882109 TAATTAGGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
5 1 0.02
6 46 0.90
7 3 0.06
8 1 0.02
ACGTcount: A:0.50, C:0.13, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:98882134 original size:43 final size:43
Alignment explanation
Indices: 98882040--98882146 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
98882030 TTCCCAGAAC
* * *
98882040 TAGAATCAAAATGAGAATCAGAATCAGAATCAGGTGACAGAAT
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAT
* *
98882083 TAGAATCAGAATCAGAATCAGAATCATAATTAGGTGACAAAAT
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAT
* *
98882126 TAGAATCAGAATTAGTATCAG
1 TAGAATCAGAATCAGAATCAG
98882147 GTAACAGAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (43 bp):
TAGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAAT
Found at i:98882164 original size:31 final size:31
Alignment explanation
Indices: 98882089--98882168 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
98882079 GAATTAGAAT
* *
98882089 CAGAATCAGAATCAGAATCATAATTAGGTGA
1 CAGAATCAGAATCAGAATCATAATCAGGTAA
* * *
98882120 CAAAATTAGAATCAGAATTAGT-ATCAGGTAA
1 CAGAATCAGAATCAGAATCA-TAATCAGGTAA
*
98882151 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
98882169 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 39 0.98
32 1 0.03
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCATAATCAGGTAA
Found at i:98882346 original size:2 final size:2
Alignment explanation
Indices: 98882339--98882366 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
98882329 CCACCAGAAC
98882339 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98882367 GTGGCGAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98882447 original size:27 final size:26
Alignment explanation
Indices: 98882399--98882450 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
98882389 GCGAGGCTGC
*
98882399 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
98882425 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
98882451 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:98882716 original size:27 final size:27
Alignment explanation
Indices: 98882686--98883068 Score: 480
Period size: 27 Copynumber: 14.2 Consensus size: 27
98882676 AACACCCTAG
** * *
98882686 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
98882713 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
98882740 GGGTAAAATAGTAATTCTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * *
98882767 GGGTAAAACGGTAATTTTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
98882794 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
98882821 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
98882848 GGGTAAAAC-GATAATTTTGTAAATCAA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
* *
98882875 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
98882902 GGGTAGAACAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
98882929 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
98882956 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
98882983 GGTTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
98883010 GGGTAAAATAGTGATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
98883037 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
98883064 GGGTA
1 GGGTA
98883069 CTTCGGTAAT
Statistics
Matches: 310, Mismatches: 44, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 308 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:98889385 original size:22 final size:21
Alignment explanation
Indices: 98889346--98889388 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
98889336 ATTTATATTT
98889346 TTCTTTTTTTTTCATTTTCTC
1 TTCTTTTTTTTTCATTTTCTC
98889367 TTCTTCTTGTTTTTC-TTTTCTC
1 TTCTT-TT-TTTTTCATTTTCTC
98889389 CCCTATAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 9 0.45
23 6 0.30
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (21 bp):
TTCTTTTTTTTTCATTTTCTC
Found at i:98890920 original size:60 final size:60
Alignment explanation
Indices: 98890818--98890956 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 60
98890808 CCAACTATGT
* * * *
98890818 TAATATGGGCAAGGCCCAATATATCTCGATTTGTAATAGGGCTGCGGCCCAGATTGATAC
1 TAATATGGGCTAGGCCCAATATATCTCGATCTGTAATAGGGCTACGGCCCAGATTAATAC
* * * *
98890878 TGATATGGGCTAGGCCCAATATA-CTCTGATACTGTAA-GGGGCTATGGCCCAGATTAATAT
1 TAATATGGGCTAGGCCCAATATATCTC-GAT-CTGTAATAGGGCTACGGCCCAGATTAATAC
*
98890938 TAATACGGGCTAAGGCCCA
1 TAATATGGGCT-AGGCCCA
98890957 GTTAACACTG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
59 3 0.05
60 51 0.77
61 12 0.18
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (60 bp):
TAATATGGGCTAGGCCCAATATATCTCGATCTGTAATAGGGCTACGGCCCAGATTAATAC
Found at i:98900501 original size:44 final size:42
Alignment explanation
Indices: 98900439--98900595 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 42
98900429 TGTGTTTTCG
* *
98900439 TGTAAGACCATGTTTGGGACGTTGGCATCGACTTGTGATTTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGA-TT-TGATTTACA
* *
98900483 TGTAAGACCATGTCTGGGACATTGACATCGTATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACGTTGGCATCG-ATTTGATTTACA
* *
98900525 TGTAAGACCCTGTCTGGGACAG-TGGCGTCGATATTCGA-TTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGAT-TT-GATTTACA
*
98900568 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
98900596 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 2 0.02
42 31 0.32
43 33 0.34
44 29 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATTTGATTTACA
Found at i:98900576 original size:43 final size:42
Alignment explanation
Indices: 98900478--98900587 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
98900468 GACTTGTGAT
* * * *
98900478 TTACGTGTAAGACCATGTCTGGGACATTGACATCGTATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGACATCGTATTCGA
* * *
98900520 TTTCATGTAAGACCCTGTCTGGGACAGTGGCGTCGATATTCGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGACATCG-TATTCGA
98900563 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
98900588 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 29 0.50
43 28 0.48
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCCTGTCTGGGACAGTGACATCGTATTCGA
Found at i:98900968 original size:64 final size:64
Alignment explanation
Indices: 98900889--98901018 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
98900879 CTTATATGTG
98900889 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
98900953 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
98901017 TT
1 TT
98901019 CAATTGTTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.20, C:0.08, G:0.23, T:0.49
Consensus pattern (64 bp):
TTGTAGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
Found at i:98910017 original size:27 final size:27
Alignment explanation
Indices: 98909984--98910035 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
98909974 TGACTTTCTA
98909984 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
**
98910011 AAAATTACTGAAATACTTTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
98910036 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:98910119 original size:27 final size:27
Alignment explanation
Indices: 98910089--98910180 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
98910079 ACCCCTATTA
*
98910089 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
98910116 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
98910143 GGTGAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
98910170 GGTAAAATGAC
1 GGTAAAATGAC
98910181 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:98911367 original size:25 final size:24
Alignment explanation
Indices: 98911334--98911381 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
98911324 CTATAACATG
* * *
98911334 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
98911358 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
98911382 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:98911432 original size:9 final size:9
Alignment explanation
Indices: 98911420--98911476 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
98911410 TTTGATAAAC
98911420 ATGATATGT
1 ATGATATGT
*
98911429 ATGATATGCAC
1 ATGATATG--T
*
98911440 ATGACATGT
1 ATGATATGT
*
98911449 ATGATATGCAC
1 ATGATATG--T
98911460 ATGATATGT
1 ATGATATGT
98911469 ATGATATG
1 ATGATATG
98911477 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:98911443 original size:20 final size:20
Alignment explanation
Indices: 98911418--98911480 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
98911408 ATTTTGATAA
98911418 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
98911438 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
98911458 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
98911478 ACA
1 ACA
98911481 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:98911591 original size:24 final size:23
Alignment explanation
Indices: 98911535--98911725 Score: 267
Period size: 24 Copynumber: 8.0 Consensus size: 23
98911525 GAGGAAGTGA
98911535 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
98911558 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
98911581 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
98911605 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
98911629 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
98911653 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
98911676 AAAATGGGCTTTTGCCCCAGTTATT
1 AAAA-GGGCTTATGCCCCAGTTA-T
*
98911701 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98911725 A
1 A
98911726 TGATAAAGCA
Statistics
Matches: 154, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
23 46 0.30
24 93 0.60
25 15 0.10
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:98911604 original size:47 final size:47
Alignment explanation
Indices: 98911535--98911703 Score: 286
Period size: 47 Copynumber: 3.6 Consensus size: 47
98911525 GAGGAAGTGA
98911535 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
98911582 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
*
98911630 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
98911676 AAAATGGGCTTTTGCCCCAGTTATTAAA
1 AAAA-GGGCTTATGCCCCAGTTATTAAA
98911704 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 4 0.03
47 66 0.57
48 45 0.39
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:98911658 original size:71 final size:70
Alignment explanation
Indices: 98911535--98911724 Score: 267
Period size: 71 Copynumber: 2.7 Consensus size: 70
98911525 GAGGAAGTGA
* *
98911535 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCA
98911600 GTTAT
66 GTTAT
*
98911605 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
98911669 CAGTTAT
64 CAGTTAT
* *
98911676 AAAATGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAA-GGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
98911725 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
70 4 0.04
71 72 0.66
72 33 0.30
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTAT
Found at i:98911962 original size:30 final size:31
Alignment explanation
Indices: 98911916--98912009 Score: 163
Period size: 30 Copynumber: 3.1 Consensus size: 31
98911906 CGTTTACAGT
98911916 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98911947 AAAGGCTTC-GCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
98911977 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98912008 AA
1 AA
98912010 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
30 30 0.50
31 30 0.50
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:98914827 original size:27 final size:26
Alignment explanation
Indices: 98914792--98914869 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
98914782 AATACTTTAG
98914792 TTTACTAAAATTACCGAAATACCCTCAA
1 TTTA-TAAAATTACCGAAATACCCT-AA
* * *
98914820 TTTGTAAAATTACCAAAATACCCTGA
1 TTTATAAAATTACCGAAATACCCTAA
* * *
98914846 TTTACAAAGTTACAGAAATACCCT
1 TTTATAAAATTACCGAAATACCCT
98914870 TGACTTTCTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 20 0.48
27 19 0.45
28 3 0.07
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.29
Consensus pattern (26 bp):
TTTATAAAATTACCGAAATACCCTAA
Found at i:98914919 original size:27 final size:27
Alignment explanation
Indices: 98914880--98914931 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
98914870 TGACTTTCTA
98914880 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
**
98914907 AAAATTACT-GAAATACTTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
98914932 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:98915045 original size:27 final size:26
Alignment explanation
Indices: 98914993--98915075 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
98914983 TAGGTAAAAA
98914993 GACCGTAAAGCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTGTAGGGTAAAGT
*
98915019 GACCGTAAAGCCCTTGTAGGGTGAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
* * *
98915046 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
98915073 GAC
1 GAC
98915076 GAATATGCCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 13 0.26
27 33 0.66
28 4 0.08
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:98916263 original size:24 final size:24
Alignment explanation
Indices: 98916231--98916277 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
98916221 TTATAACATG
* * *
98916231 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
98916255 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
98916278 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:98916328 original size:9 final size:9
Alignment explanation
Indices: 98916316--98916372 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
98916306 TTTGATAAAC
98916316 ATGATATGT
1 ATGATATGT
*
98916325 ATGATATGCAC
1 ATGATATG--T
*
98916336 ATGACATGT
1 ATGATATGT
*
98916345 ATGATATGCAC
1 ATGATATG--T
98916356 ATGATATGT
1 ATGATATGT
98916365 ATGATATG
1 ATGATATG
98916373 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:98916339 original size:20 final size:20
Alignment explanation
Indices: 98916314--98916376 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
98916304 ATTTTGATAA
98916314 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
98916334 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
98916354 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
98916374 ACA
1 ACA
98916377 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:98916487 original size:24 final size:23
Alignment explanation
Indices: 98916431--98916597 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
98916421 GAGGAAGTGA
98916431 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
98916454 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
98916477 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
98916501 CAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
98916526 AAAAGGGCTTACGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
98916549 TAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
98916573 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98916597 A
1 A
98916598 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 42 0.32
24 77 0.59
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:98916530 original size:48 final size:47
Alignment explanation
Indices: 98916431--98916596 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
98916421 GAGGAAGTGA
*
98916431 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
98916478 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
* *
98916526 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
98916573 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98916597 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
47 55 0.50
48 55 0.50
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:98916823 original size:31 final size:31
Alignment explanation
Indices: 98916788--98916882 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
98916778 CGTTTACAGT
98916788 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
98916819 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
98916850 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98916881 AA
1 AA
98916883 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:98919111 original size:79 final size:81
Alignment explanation
Indices: 98919010--98919194 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
98919000 ACGACTCGCT
** * *
98919010 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
98919073 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
98919090 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
98919154 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
98919170 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98919195 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:98919194 original size:40 final size:39
Alignment explanation
Indices: 98919003--98919194 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
98918993 GAATATAACG
* ** * *
98919003 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
98919043 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
98919083 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
98919122 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
98919162 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
98919195 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:98923300 original size:39 final size:40
Alignment explanation
Indices: 98923198--98923388 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
98923188 TTGAATGATG
* * *
98923198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
98923238 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
98923278 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
98923317 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
98923358 -CCGGGCT-TGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
98923389 CGTTATATCC
Statistics
Matches: 130, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 55 0.42
40 66 0.51
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98923338 original size:79 final size:81
Alignment explanation
Indices: 98923198--98923388 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 81
98923188 TTGAATGATG
* * *
98923198 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
98923262 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
98923278 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
98923341 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
* *
98923358 -CCGGGCT-TGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
98923389 CGTTATATCC
Statistics
Matches: 98, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 76 0.78
80 20 0.20
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:98931253 original size:39 final size:40
Alignment explanation
Indices: 98931151--98931340 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
98931141 TTGAATGATG
* * *
98931151 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
98931191 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98931231 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
98931270 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
98931311 -CCGGGCT-TGT-CCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
98931341 CGTTATATCC
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 18 0.14
39 35 0.28
40 65 0.51
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98931291 original size:79 final size:81
Alignment explanation
Indices: 98931151--98931333 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
98931141 TTGAATGATG
* *
98931151 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
98931215 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
98931231 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
98931294 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
* *
98931311 -CCGGGCT-TGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
98931334 AGCGAGTCGT
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 15 0.16
79 57 0.62
80 20 0.22
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:98932529 original size:25 final size:26
Alignment explanation
Indices: 98932481--98932532 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
98932471 GGCCGACCAA
98932481 AAATTCTAGAAAAAAATCTGTAGATGG
1 AAATTCTAGAAAAAAATC-GTAGATGG
98932508 AAATTCTAGAAAAAAATC-TAGATGG
1 AAATTCTAGAAAAAAATCGTAGATGG
98932533 GGGATGAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 7 0.28
27 18 0.72
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.25
Consensus pattern (26 bp):
AAATTCTAGAAAAAAATCGTAGATGG
Found at i:98938281 original size:79 final size:81
Alignment explanation
Indices: 98938180--98938364 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
98938170 ACGACTCGCT
** * *
98938180 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
98938243 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
98938260 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
98938324 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
98938340 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
98938365 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:98938364 original size:40 final size:39
Alignment explanation
Indices: 98938173--98938364 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
98938163 GGATATAACG
* ** * *
98938173 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
98938213 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
98938253 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
98938292 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
98938332 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
98938365 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:98956544 original size:26 final size:26
Alignment explanation
Indices: 98956515--98956567 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
98956505 GATGTGATAA
98956515 ATGATAAAAAAAATTAAGCATGTAGG
1 ATGATAAAAAAAATTAAGCATGTAGG
98956541 ATGATAAAAAAAATTAAGCATGTAGG
1 ATGATAAAAAAAATTAAGCATGTAGG
98956567 A
1 A
98956568 AGAGAAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.55, C:0.04, G:0.19, T:0.23
Consensus pattern (26 bp):
ATGATAAAAAAAATTAAGCATGTAGG
Found at i:98956579 original size:26 final size:26
Alignment explanation
Indices: 98956520--98956580 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
98956510 GATAAATGAT
* *
98956520 AAAAAAAATTAAGCATGTAGGATGAT
1 AAAAAAAATTAAGCATGTAGGAAGAG
98956546 AAAAAAAATTAAGCATGTAGGAAGAG
1 AAAAAAAATTAAGCATGTAGGAAGAG
98956572 AAACAAAAA
1 AAA-AAAAA
98956581 AATCAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 27 0.84
27 5 0.16
ACGTcount: A:0.61, C:0.05, G:0.18, T:0.16
Consensus pattern (26 bp):
AAAAAAAATTAAGCATGTAGGAAGAG
Found at i:98957976 original size:40 final size:40
Alignment explanation
Indices: 98957884--98958033 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
98957874 AATTGAATGA
* * * *
98957884 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
98957923 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
98957964 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
98958003 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
98958034 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:98958047 original size:40 final size:40
Alignment explanation
Indices: 98957923--98958049 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
98957913 GCTGGAAATT
* * * * *
98957923 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
98957963 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
98958003 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
98958043 TATCCGG
1 TATCCGG
98958050 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:98961699 original size:40 final size:39
Alignment explanation
Indices: 98961572--98961701 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
98961562 ATGCTGGAAA
* *
98961572 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
98961612 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
98961652 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
98961692 TTATATCCGG
1 TTATATCCGG
98961702 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:98969580 original size:179 final size:181
Alignment explanation
Indices: 98969256--98969612 Score: 556
Period size: 179 Copynumber: 2.0 Consensus size: 181
98969246 TATTAAGGGT
* *
98969256 CCTGAGAAGTGTGAGAAGTCCTGGGATCAAACCTGGGCTTTGGCAAATTTTTTGGTTTTTATTAA
1 CCTGAGAAGTGTGAGAAGTCCTGGGATCAAACCTGGGCTTTGGCAAAATTTTTGGTTTTTACTAA
*
98969321 ACAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAATTAAATCATGAAGGGT
66 ACAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAAGTAAATCATGAAGGGT
* * *
98969386 CTGTCGGTTCAAGGGATTTTGGCGTATTACTAATGGTAAGGTACTTGGCAA
131 CTGTAGGTTCAAGGGATTGTGGCGTATTACTAATGGTAAGGGACTTGGCAA
* * *
98969437 CCTGAGAAGTGTGAGACGTCCTGGGTTCAGACCTGGGCTTTGGCAAAATTTTT-GTTTTTACTAA
1 CCTGAGAAGTGTGAGAAGTCCTGGGATCAAACCTGGGCTTTGGCAAAATTTTTGGTTTTTACTAA
* ** * **
98969501 ATAAAACCTTGGCTGCTAGGCTTTGGGTTCTT-ATTAATTGGAGGGAAAGTATGTCATGAAGGGT
66 ACAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAAGTAAATCATGAAGGGT
*
98969565 CTGTAGGTTCAAGGGATTGTGGCGTGTTACTAATGGTAAGGGACTTGG
131 CTGTAGGTTCAAGGGATTGTGGCGTATTACTAATGGTAAGGGACTTGG
98969613 GTTCGAGTTT
Statistics
Matches: 160, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
179 72 0.45
180 39 0.24
181 49 0.31
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.32
Consensus pattern (181 bp):
CCTGAGAAGTGTGAGAAGTCCTGGGATCAAACCTGGGCTTTGGCAAAATTTTTGGTTTTTACTAA
ACAAAACCTTGGCTGCTAGGCACTGGGTTCTTAATTAATTAGAGGGAAAGTAAATCATGAAGGGT
CTGTAGGTTCAAGGGATTGTGGCGTATTACTAATGGTAAGGGACTTGGCAA
Found at i:98971240 original size:26 final size:26
Alignment explanation
Indices: 98971208--98971302 Score: 138
Period size: 26 Copynumber: 3.7 Consensus size: 26
98971198 TGTAGGGTAG
* * *
98971208 AATTACCAAAATACCTTGGTTTATAA
1 AATTACCAAAATACCCTAGTTTGTAA
98971234 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
98971260 AATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCTAGTTTGTAA
*
98971286 AATTACCAAAGTACCCT
1 AATTACCAAAATACCCT
98971303 CAATTTACAG
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
25 5 0.08
26 53 0.84
27 5 0.08
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:98971340 original size:78 final size:79
Alignment explanation
Indices: 98971258--98971421 Score: 179
Period size: 78 Copynumber: 2.1 Consensus size: 79
98971248 CCTAGTTTGT
* * * *
98971258 AAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTA-CTT
1 AAAATTACCAAAATACCCTCA-ATTATAAAATTACCAAAGTACCCTCAATTTACAAAATTATCGT
98971321 TTACCCTCGATTTAC
65 TTACCCTCGATTTAC
* *** * **** *
98971336 AAAATTACTATTTTACCCTCAATTATAGAATTACCGTTTTACCCTCAATTTATAAAATTATCGTT
1 AAAATTACCAAAATACCCTCAATTATAAAATTACCAAAGTACCCTCAATTTACAAAATTATCGTT
98971401 TACCCTCGATTTAC
66 TACCCTCGATTTAC
98971415 AAAATTA
1 AAAATTA
98971422 TCGTTTTACC
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
78 45 0.64
79 25 0.36
ACGTcount: A:0.37, C:0.21, G:0.05, T:0.36
Consensus pattern (79 bp):
AAAATTACCAAAATACCCTCAATTATAAAATTACCAAAGTACCCTCAATTTACAAAATTATCGTT
TACCCTCGATTTAC
Found at i:98971393 original size:53 final size:53
Alignment explanation
Indices: 98971297--98971565 Score: 273
Period size: 53 Copynumber: 5.1 Consensus size: 53
98971287 ATTACCAAAG
* *
98971297 TACCCTCAATTTACAGAATTA-C-TTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCAA-TTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTT
* **
98971349 TACCCTCAATTATAGAATTACCGTTTTACCCTCAATTTATAAAATTA-TCGTT
1 TACCCTCAATTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTT
* * * * *
98971401 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTA-TCATTT
1 TACCCTC-AATTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACT-ATTT
* * * * **
98971455 TATCCTCGATTTATAAAATTACTC-TTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTC-AATTATAGAATTAC-CGTTTTACCCTCGATTTATAAAATTACTATTT
* *
98971509 TACCCTCTATT-TACGAATTACCGTTTTACCCTCGATTTAT-AAATTACCATTT
1 TACCCTCAATTATA-GAATTACCGTTTTACCCTCGATTTATAAAATTACTATTT
98971561 TACCC
1 TACCC
98971566 CTAGGGTGTT
Statistics
Matches: 183, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
51 10 0.05
52 38 0.21
53 82 0.45
54 52 0.28
55 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (53 bp):
TACCCTCAATTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACTATTT
Found at i:98971400 original size:27 final size:27
Alignment explanation
Indices: 98971297--98971565 Score: 291
Period size: 27 Copynumber: 10.2 Consensus size: 27
98971287 ATTACCAAAG
* * *
98971297 TACCCTCAATTTACAGAATTA-C-TTT
1 TACCCTCGATTTATAAAATTACCGTTT
* **
98971322 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
98971349 TACCCTC-AATTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
98971375 TACCCTCAATTTATAAAATTATCG-TT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
98971401 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
98971428 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
98971455 TATCCTCGATTTATAAAATTACTC-TTT
1 TACCCTCGATTTATAAAATTAC-CGTTT
*
98971482 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* **
98971509 TACCCTCTATTTA-CGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
98971535 TACCCTCGATTTAT-AAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
98971561 TACCC
1 TACCC
98971566 CTAGGGTGTT
Statistics
Matches: 213, Mismatches: 24, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
25 19 0.09
26 85 0.40
27 108 0.51
28 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:98971941 original size:98 final size:99
Alignment explanation
Indices: 98971837--98972037 Score: 350
Period size: 100 Copynumber: 2.0 Consensus size: 99
98971827 CTAGTGCTGT
* *
98971837 AATCTGGTGGCTTCGCCAC-ATATATATATCTGTTCTAGTGGCCTAGCCGCAATATCTGTATCTG
1 AATCTGGTGGCTTCGCCACAATATATATATCTATTCTAGTGGCCTAGCCGCAATATCTGTATATG
98971901 GTGACTTCGTCACAATATCTGGCAGCCTCGCTAC
66 GTGACTTCGTCACAATATCTGGCAGCCTCGCTAC
*
98971935 AATCTGGTGGCTTCGCCACATATATATATATCTATTCTGGTGGCCTAGCCGCAATATCTGTATAT
1 AATCTGGTGGCTTCGCCACA-ATATATATATCTATTCTAGTGGCCTAGCCGCAATATCTGTATAT
*
98972000 GGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
65 GGTGACTTCGTCACAATATCTGGCAGCCTCGCTAC
98972035 AAT
1 AAT
98972038 TTCTGTGGTA
Statistics
Matches: 97, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 19 0.20
100 78 0.80
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (99 bp):
AATCTGGTGGCTTCGCCACAATATATATATCTATTCTAGTGGCCTAGCCGCAATATCTGTATATG
GTGACTTCGTCACAATATCTGGCAGCCTCGCTAC
Found at i:98972178 original size:6 final size:6
Alignment explanation
Indices: 98972139--98972235 Score: 90
Period size: 6 Copynumber: 15.8 Consensus size: 6
98972129 TTGCATTCAC
* * *
98972139 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
98972188 ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
98972236 AGTTCTAATA
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
5 3 0.04
6 62 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:98972200 original size:43 final size:43
Alignment explanation
Indices: 98972139--98972235 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 43
98972129 TTGCATTCAC
* *
98972139 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTA
* *
98972182 ATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTGATTCTC
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTA
*
98972225 ATTTTGATTCT
1 ATTCTGATTCT
98972236 AGTTCTAATA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (43 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTA
Found at i:98975015 original size:44 final size:45
Alignment explanation
Indices: 98974916--98975072 Score: 246
Period size: 44 Copynumber: 3.5 Consensus size: 45
98974906 TATCGCACAG
*
98974916 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
98974961 TACTATTCGGGCCTTTGAG-CTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
98975005 TACCACTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
98975050 TACTATTCGGG-CTTCGAGCCTAG
1 TACTATTCGGGCCTTTGAGCCTAG
98975073 TAGGTGAAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
44 51 0.50
45 51 0.50
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:98977440 original size:28 final size:28
Alignment explanation
Indices: 98977408--98977506 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
98977398 GCAATAAGCC
*
98977408 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
98977436 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
98977464 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
98977493 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98977507 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:98984702 original size:28 final size:27
Alignment explanation
Indices: 98984626--98984724 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 27
98984616 GCAATAAGCC
* *
98984626 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTT-ATAATCAAACT
*
98984654 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCT-TATAATCAAACT
* ** *
98984682 TGCACACTTAGTGCTGTATAATTTGAACC
1 CGCACACTTAGTGCT-TATAA-TCAAACT
98984711 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98984725 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 41 0.69
29 18 0.31
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:98991002 original size:46 final size:46
Alignment explanation
Indices: 98990949--98991124 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98990939 TATTTGGGCA
98990949 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98990995 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98991042 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98991088 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98991125 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98991104 original size:93 final size:93
Alignment explanation
Indices: 98990945--98991116 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98990935 GGGATATTTG
* *
98990945 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98991010 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98991038 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98991103 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98991117 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98994092 original size:15 final size:15
Alignment explanation
Indices: 98994072--98994140 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98994062 GTATCTTGGG
98994072 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98994087 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98994102 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98994117 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98994132 TTTCTTTAT
1 TTTCTTTAT
98994141 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98994141 original size:30 final size:30
Alignment explanation
Indices: 98994063--98994150 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98994053 CATAGTATCG
* * * *
98994063 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98994093 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98994123 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98994151 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98996582 original size:46 final size:46
Alignment explanation
Indices: 98996532--98996707 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98996522 TATTTGGGCA
98996532 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98996578 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98996625 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98996671 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98996708 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98996687 original size:93 final size:93
Alignment explanation
Indices: 98996528--98996699 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98996518 TGGATATTTG
* *
98996528 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98996593 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98996621 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98996686 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98996700 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:99000821 original size:45 final size:45
Alignment explanation
Indices: 99000757--99000974 Score: 250
Period size: 45 Copynumber: 5.0 Consensus size: 45
99000747 TATCGCACAG
99000757 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
99000802 TACTATTCGGACCTTTGAGCCTAACAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
99000847 TACCACTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
99000892 TACTATTCAGG-CTTTGAGCCTAGCAGACGA-AATGTCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * *
99000934 TGA--ATTCGGGTTTTTAAACCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
99000975 TTTGATAAAA
Statistics
Matches: 146, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
41 6 0.04
42 26 0.18
43 9 0.06
44 17 0.12
45 88 0.60
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:99002739 original size:20 final size:20
Alignment explanation
Indices: 99002698--99002739 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
99002688 GGGAGTTAAT
*
99002698 TTTAATATTTGTGAGCTAGA
1 TTTAATATTTGTGAGCCAGA
* *
99002718 TTTAATGTTTGTGAGCCCGA
1 TTTAATATTTGTGAGCCAGA
99002738 TT
1 TT
99002740 GAAAAAAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (20 bp):
TTTAATATTTGTGAGCCAGA
Found at i:99002875 original size:77 final size:77
Alignment explanation
Indices: 99002748--99002902 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
99002738 TTGAAAAAAA
99002748 GGACTAAATCACATAAAAGGAAAAAGTTGCATTTTAGTGCCCAAATATGTTAAATAGTTAGAGAT
1 GGACTAAATCACATAAAAGGAAAAAGTTGCATTTTAGTGCCCAAATATGTTAAATAGTTAGAGAT
99002813 TATGATTTGGGG
66 TATGATTTGGGG
99002825 GGACTAAATCACATAAAAGGAAAAAGTTGCATTTTAGTGCCCAAATATGTTAAATAGTTAGAGAT
1 GGACTAAATCACATAAAAGGAAAAAGTTGCATTTTAGTGCCCAAATATGTTAAATAGTTAGAGAT
99002890 TATGATTTGGGG
66 TATGATTTGGGG
99002902 G
1 G
99002903 TCTTTAAAGG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (77 bp):
GGACTAAATCACATAAAAGGAAAAAGTTGCATTTTAGTGCCCAAATATGTTAAATAGTTAGAGAT
TATGATTTGGGG
Found at i:99003949 original size:47 final size:47
Alignment explanation
Indices: 99003881--99004094 Score: 163
Period size: 47 Copynumber: 4.6 Consensus size: 47
99003871 CTTGCGTACT
*
99003881 AGTGTAAGACATGTCTAGGACATGCATCGACCACA-ATATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAGATATGATAGCC
* * * ** *
99003927 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGA-ATGAGCGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACAGATATGATAGCC
* * * *
99003976 AGTGTACGACATGTCTGGGACATGCGTCGGCCTC-GATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAGAT-ATGATAGCC
* * * * * * *
99004023 AATGTAAGACGTCTTTGGGACATGCATCGGCTA-AGAGT-TG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAGA-TATGATAGCC
*
99004067 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
99004095 AGCACACGTA
Statistics
Matches: 133, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
44 27 0.20
45 3 0.02
46 11 0.08
47 53 0.40
48 22 0.17
49 16 0.12
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACAGATATGATAGCC
Found at i:99004042 original size:95 final size:91
Alignment explanation
Indices: 99003879--99004094 Score: 254
Period size: 95 Copynumber: 2.3 Consensus size: 91
99003869 TACTTGCGTA
* * *
99003879 CTAGTGTAAGACATGTCTAGGACATGCATCGACCACAATATGATAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATATGATAGCCAATGTAAGACCATCTCT
99003944 GGGACATGGCATCGGCGTAGAGAATGAGCG
66 GGGACAT-GCATCGGC-TA-AGAAT-AGCG
* * * * * * *
99003974 CTAGTGTACGACATGTCTGGGACATGCGTCGGCCTCGATGATGATAGCCAATGTAAGA-CGTCTT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAAT-ATGATAGCCAATGTAAGACCATCTC
* * *
99004038 TGGGACATGCATCGGCTAAGAGTTGTG
65 TGGGACATGCATCGGCTAAGAATAGCG
*
99004065 CTAGTGTAAGACATGTTTGGGACATGCATC
1 CTAGTGTAAGACATGTCTGGGACATGCATC
99004095 AGCACACGTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
91 29 0.28
92 4 0.04
93 2 0.02
94 8 0.08
95 44 0.42
96 17 0.16
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (91 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAATATGATAGCCAATGTAAGACCATCTCT
GGGACATGCATCGGCTAAGAATAGCG
Found at i:99005680 original size:40 final size:40
Alignment explanation
Indices: 99005593--99005804 Score: 203
Period size: 40 Copynumber: 5.3 Consensus size: 40
99005583 CCTTCGGAAT
* * *
99005593 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
99005632 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
99005672 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
99005712 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * * *
99005752 TTAGCCCGGATATAATTACTAGCACAATTTCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
99005792 TTAGCCCGGATAT
1 TTAACCCGGATAT
99005805 CATTCCAATG
Statistics
Matches: 143, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 139 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:99005718 original size:80 final size:80
Alignment explanation
Indices: 99005593--99005804 Score: 239
Period size: 80 Copynumber: 2.7 Consensus size: 80
99005583 CCTTCGGAAT
* * * ** * ***
99005593 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
99005657 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
99005672 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
99005737 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * * *
99005752 TTAGCCCGGATATAATTACTAGCACAATTTCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
99005805 CATTCCAATG
Statistics
Matches: 109, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 103 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:99008264 original size:55 final size:55
Alignment explanation
Indices: 99008205--99008323 Score: 166
Period size: 55 Copynumber: 2.2 Consensus size: 55
99008195 GTCAATTTAA
* * * *
99008205 TACACGGGCAGGCCACACGAACGTGTGTCGTGGCCGTGTTTTAAAGTTAGTGTTG
1 TACACGGGCAGGCCACACGAACGCGTGTCATGGCCGTGTTTCAAAGTCAGTGTTG
**
99008260 TACACGGGCAGGCCACACGGGCGCGTGTCATGGCCGTGTTTCAAAGTCAGTGTTG
1 TACACGGGCAGGCCACACGAACGCGTGTCATGGCCGTGTTTCAAAGTCAGTGTTG
* *
99008315 CACAAGGGC
1 TACACGGGC
99008324 TAAGGGCACA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.20, C:0.24, G:0.34, T:0.23
Consensus pattern (55 bp):
TACACGGGCAGGCCACACGAACGCGTGTCATGGCCGTGTTTCAAAGTCAGTGTTG
Found at i:99011078 original size:27 final size:30
Alignment explanation
Indices: 99011035--99011095 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 30
99011025 GATTATGTAG
99011035 AAAGAATAAAGAAATGAA-AAAAA-AAA-A
1 AAAGAATAAAGAAATGAAGAAAAACAAAGA
*
99011062 AAAGAA-AGAGAATATGAAGAAAAACAAAGA
1 AAAGAATAAAGAA-ATGAAGAAAAACAAAGA
99011092 AAAG
1 AAAG
99011096 GAAAAAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
27 11 0.38
28 5 0.17
29 3 0.10
30 5 0.17
ACGTcount: A:0.75, C:0.02, G:0.16, T:0.07
Consensus pattern (30 bp):
AAAGAATAAAGAAATGAAGAAAAACAAAGA
Found at i:99012295 original size:27 final size:27
Alignment explanation
Indices: 99012263--99012314 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
99012253 GTGACGAGAT
99012263 TGGCACTAAGTGTGCATGCTGGAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATA
99012290 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
99012315 AATACGGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (27 bp):
TGGCACTAAGTGTGCATGCTGGAAATA
Found at i:99012333 original size:29 final size:27
Alignment explanation
Indices: 99012264--99012325 Score: 97
Period size: 27 Copynumber: 2.2 Consensus size: 27
99012254 TGACGAGATT
*
99012264 GGCACTAAGTGTGCATGCTGGAAATAT
1 GGCACTAAGTGTGCATGCTGGAAATAC
99012291 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGG--AAATAC
99012320 GGCACT
1 GGCACT
99012326 GGGTGTGCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 21 0.66
29 11 0.34
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.23
Consensus pattern (27 bp):
GGCACTAAGTGTGCATGCTGGAAATAC
Found at i:99024381 original size:40 final size:40
Alignment explanation
Indices: 99024322--99024423 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
99024312 AAATTGAATG
* * * *
99024322 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGTTAAGACCCGAAGACAATTATGCTAGAAACT
* * ***
99024362 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGTTAAGACCCGAAGACAATTATGCTAGAAACT
99024402 ATATCCGGGTTAAGACCCGAAG
1 ATATCCGGGTTAAGACCCGAAG
99024424 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGTTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:99024424 original size:40 final size:40
Alignment explanation
Indices: 99024361--99024489 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
99024351 TGCTGGAAAT
* *
99024361 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
99024401 TATATCCGGGTTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGTTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * * *
99024441 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGA-GTGAC
99024481 TATATCCGG
1 TATATCCGG
99024490 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:99025251 original size:27 final size:29
Alignment explanation
Indices: 99025206--99025266 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 29
99025196 TGGATTATGT
99025206 AGAAAGAATAAAGAAATGAA-AAAAA-AA
1 AGAAAGAATAAAGAAATGAAGAAAAACAA
*
99025233 AGAAAGAA-AGAGAATATGAAGAAAAACAA
1 AGAAAGAATAAAGAA-ATGAAGAAAAACAA
99025262 AGAAA
1 AGAAA
99025267 AGGAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 5 0.17
27 13 0.43
28 5 0.17
29 7 0.23
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.07
Consensus pattern (29 bp):
AGAAAGAATAAAGAAATGAAGAAAAACAA
Found at i:99026470 original size:29 final size:29
Alignment explanation
Indices: 99026437--99026501 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
99026427 GTGACGAGAT
*
99026437 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
99026466 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
99026495 CGGCACT
1 TGGCACT
99026502 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:99035621 original size:21 final size:21
Alignment explanation
Indices: 99035595--99035635 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
99035585 TGCATATTCT
99035595 AATTTCATAAACTAATTTACG
1 AATTTCATAAACTAATTTACG
99035616 AATTTCATAAACTAATTTAC
1 AATTTCATAAACTAATTTAC
99035636 TAAATCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCATAAACTAATTTACG
Found at i:99035891 original size:2 final size:2
Alignment explanation
Indices: 99035884--99035920 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
99035874 ATCTTTACAA
99035884 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
99035921 CCTATGTGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:99037540 original size:15 final size:15
Alignment explanation
Indices: 99037508--99037536 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
99037498 ATTTTCTGTG
99037508 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
99037523 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
99037537 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:99053849 original size:47 final size:47
Alignment explanation
Indices: 99053731--99053856 Score: 154
Period size: 46 Copynumber: 2.7 Consensus size: 47
99053721 GGATGGTTGA
* *
99053731 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGA-GGATGCGAAT
*
99053779 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGGATGCGAA-T
99053822 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
99053857 CTTAGGGGCG
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.42
47 29 0.42
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGGATGCGAAT
Found at i:99059056 original size:41 final size:41
Alignment explanation
Indices: 99059011--99059128 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99059001 TGAAAGATAA
99059011 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99059052 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99059082 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99059123 ATGTAG
1 ATGTAG
99059129 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99059067 original size:71 final size:71
Alignment explanation
Indices: 99058979--99059142 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99058969 GAGATGTATC
99058979 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99059044 AGGACA
66 AGGACA
99059050 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99059115 AGGACA
66 AGGACA
99059121 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99059143 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99066635 original size:41 final size:41
Alignment explanation
Indices: 99066590--99066707 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99066580 TGAAAGATAA
99066590 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99066631 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99066661 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99066702 ATGTAG
1 ATGTAG
99066708 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99066646 original size:71 final size:71
Alignment explanation
Indices: 99066558--99066721 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99066548 GAGATGTATC
99066558 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99066623 AGGACA
66 AGGACA
99066629 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99066694 AGGACA
66 AGGACA
99066700 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99066722 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99075807 original size:40 final size:40
Alignment explanation
Indices: 99075699--99075908 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
99075689 CGGGATTTAA
* * * * *
99075699 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
99075739 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99075779 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99075819 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99075859 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99075899 CCGGATATAT
1 CCGGATATAT
99075909 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:99083098 original size:40 final size:39
Alignment explanation
Indices: 99083014--99083217 Score: 225
Period size: 40 Copynumber: 5.1 Consensus size: 39
99083004 TCGAATGATG
* *
99083014 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTATA
*
99083054 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* * *
99083093 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
**
99083133 TCCGGTTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
* * *
99083173 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATA
99083213 TCCGG
1 TCCGG
99083218 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 36 0.26
40 95 0.67
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:99083150 original size:79 final size:80
Alignment explanation
Indices: 99083014--99083231 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 80
99083004 TCGAATGATG
* * * **
99083014 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGTTTAAGATCCGAAGGCATT
99083078 TGTGCGAGTTACTA-A
65 TGTGCGAGTTACTATA
* *
99083093 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGTTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTTTAAGAT-CCGAAGGCAT
99083156 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* * *
99083173 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGG-TTAA-ATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGTTTAAGA-TCCGAAGG
99083232 TATGTGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 72 0.61
80 46 0.39
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTTTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:99086290 original size:17 final size:17
Alignment explanation
Indices: 99086231--99086290 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
99086221 TAATAAATTT
99086231 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
99086250 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
99086264 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
99086282 AAAATATAA
1 AAAATATAA
99086291 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:99086830 original size:17 final size:18
Alignment explanation
Indices: 99086774--99086871 Score: 137
Period size: 18 Copynumber: 5.5 Consensus size: 18
99086764 AATCATATCT
*
99086774 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
* *
99086793 TCTAAGATTGCAATTATA
1 TCTAAGATTGCTATCATA
99086811 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
99086828 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
99086846 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
99086863 TCTAAGATT
1 TCTAAGATT
99086872 ACATATAATT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
17 30 0.42
18 31 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:99086832 original size:35 final size:35
Alignment explanation
Indices: 99086774--99086871 Score: 169
Period size: 35 Copynumber: 2.7 Consensus size: 35
99086764 AATCATATCT
*
99086774 TCTAAGATTGTATATCATATCTAAGATTGCAATTATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
99086811 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
99086846 TCTAAGATTGTATCATATCTAAGATT
1 TCTAAGATTGTATCATATCTAAGATT
99086872 ACATATAATT
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
35 50 0.83
37 10 0.17
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:99087392 original size:83 final size:83
Alignment explanation
Indices: 99087252--99087684 Score: 686
Period size: 83 Copynumber: 5.2 Consensus size: 83
99087242 TAATTTGTAG
* * ** * ** * * *
99087252 GGATGCCAAATCAACTTGAACCCGTTTGAGAATGTTTGAGAGTTATATCTGCCATGTCCTCAATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
*
99087317 TGTCCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
* *
99087335 GGATGCCAAACCATCCTGAGTTTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
* *
99087400 CGTTCTTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
* * *
99087418 GGATGCCAAACCATCTTGAGTCTATTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTGGATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
99087483 TGTTCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
*
99087501 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
99087566 TGTTCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
*
99087584 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
99087649 TGTTCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
99087667 GGATGCCAAACCATCTTG
1 GGATGCCAAACCATCTTG
99087685 GATCTGCTTC
Statistics
Matches: 324, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 324 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (83 bp):
GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
TGTTCCTTGTAAGCACAA
Found at i:99087871 original size:202 final size:202
Alignment explanation
Indices: 99087525--99088005 Score: 847
Period size: 202 Copynumber: 2.4 Consensus size: 202
99087515 CTTGAGTCTG
* * * * *
99087525 TTTGAGAACATTTGAGAGTCATATCTG-TAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
1 TTTGAGAACGTCTGAGAGTCAAATCTGCT-ATGTCCTCGATTTGTTCCTTGTAAACACAAGAATG
* *
99087589 CCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGTAATGTCCTCGATTTGTTC
65 CCAAACCATCTTGAGTCTGTTTGAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTGTTC
* *
99087654 CTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGAT
130 CTTGTAAGCACAAGGATGCCAAACCATCTTGAATCTACTTCAGTATAAACATCTGAAGGTTAGAT
99087719 CTGCTATA
195 CTGCTATA
99087727 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
99087792 CAAACCATCTTGAGTCTGTTTGAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
66 CAAACCATCTTGAGTCTGTTTGAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
99087857 TTGTAAGCACAAGGATGCCAAACCATCTTGAATCTACTTCAGTATAAACATCTGAAGGTTAGATC
131 TTGTAAGCACAAGGATGCCAAACCATCTTGAATCTACTTCAGTATAAACATCTGAAGGTTAGATC
99087922 TGCTATA
196 TGCTATA
*
99087929 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
99087994 CAAATCATCTTG
66 CAAACCATCTTG
99088006 GATCTGCTTC
Statistics
Matches: 267, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
202 266 1.00
203 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (202 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAACCATCTTGAGTCTGTTTGAGAACAATTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
TTGTAAGCACAAGGATGCCAAACCATCTTGAATCTACTTCAGTATAAACATCTGAAGGTTAGATC
TGCTATA
Found at i:99088021 original size:119 final size:119
Alignment explanation
Indices: 99087822--99088287 Score: 806
Period size: 119 Copynumber: 3.9 Consensus size: 119
99087812 TGAGAACAAT
* * * * *
99087822 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
99087887 AATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
66 GATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
*
99087941 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
99088006 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTG
66 GATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
*
99088060 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
* *
99088125 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATCTTTGAGAACGTC
66 GATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
*
99088179 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
*
99088244 GAGCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATT
66 GATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATT
99088288 CGATCTGTTC
Statistics
Matches: 329, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 329 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (119 bp):
TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTG
GATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGTC
Found at i:99089305 original size:15 final size:13
Alignment explanation
Indices: 99089285--99089347 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 13
99089275 TCCATTTTTC
99089285 TTTTTTTCTCCTTAT
1 TTTTTTTCT-CTT-T
99089300 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
*
99089313 TTCTTTTCT-TTT
1 TTTTTTTCTCTTT
*
99089325 TCTTTCTTTTTCTTT
1 T-TTT-TTTCTCTTT
99089340 TTCTTTTT
1 TT-TTTTT
99089348 TTTTTGAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 4 0.10
13 11 0.27
14 11 0.27
15 15 0.37
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTCTCTTT
Found at i:99089307 original size:23 final size:21
Alignment explanation
Indices: 99089279--99089352 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 21
99089269 GGCCTCTCCA
99089279 TTTTTCTTTTTTTCTCCTTATTT
1 TTTTTCTTTTTTTCT-CTT-TTT
* *
99089302 TTTTTCTCTTTTTCTTTTCTTT
1 TTTTTCTTTTTTTCTCTT-TTT
*
99089324 TTCTTTCTTTTTCTTTTTCTTTTT
1 TT-TTTC-TTTT-TTTCTCTTTTT
99089348 TTTTT
1 TTTTT
99089353 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
22 7 0.17
23 21 0.50
24 8 0.19
25 6 0.14
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTCTTTTTTTCTCTTTTT
Found at i:99089313 original size:11 final size:10
Alignment explanation
Indices: 99089279--99089352 Score: 62
Period size: 10 Copynumber: 7.2 Consensus size: 10
99089269 GGCCTCTCCA
99089279 TTTTTCTTTT
1 TTTTTCTTTT
*
99089289 TTTCTCCTTATT
1 TTT-TTCTT-TT
* *
99089301 TTTTT-TCTC
1 TTTTTCTTTT
99089310 TTTTTCTTTT
1 TTTTTCTTTT
*
99089320 CTTTTTCTTTC
1 -TTTTTCTTTT
99089331 TTTTTCTTTT
1 TTTTTCTTTT
99089341 TCTTTT-TTTT
1 T-TTTTCTTTT
99089351 TT
1 TT
99089353 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
9 7 0.14
10 21 0.41
11 18 0.35
12 5 0.10
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:99089319 original size:6 final size:6
Alignment explanation
Indices: 99089279--99089352 Score: 68
Period size: 6 Copynumber: 12.8 Consensus size: 6
99089269 GGCCTCTCCA
* * *
99089279 TTTTTC TTTTT- TTCTCC TTATTTT TTTTCTC TTTTTC -TTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TT-TTTC TTTT-TC TTTTTC TTTTTC TTTTTC
99089327 --TTTC TTTTTC TTTTTC TTTTT- TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
99089353 GAAATAGAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
4 4 0.07
5 13 0.23
6 31 0.55
7 8 0.14
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:99089324 original size:21 final size:21
Alignment explanation
Indices: 99089300--99089350 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
99089290 TTCTCCTTAT
99089300 TTTTTTTCTCTTTTTC-TTTTC
1 TTTTTTT-TCTTTTTCTTTTTC
99089321 TTTTTCTTTCTTTTTCTTTTTC
1 TTTTT-TTTCTTTTTCTTTTTC
99089343 TTTTTTTT
1 TTTTTTTT
99089351 TTGAAATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTTTTCTTTTTCTTTTTC
Found at i:99089350 original size:16 final size:16
Alignment explanation
Indices: 99089299--99089351 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
99089289 TTTCTCCTTA
*
99089299 TTTTT-TTTCTCTTTT
1 TTTTTCTTTTTCTTTT
*
99089314 TCTTTTCTTTTTCTTTC
1 T-TTTTCTTTTTCTTTT
99089331 TTTTTCTTTTTCTTTT
1 TTTTTCTTTTTCTTTT
99089347 TTTTT
1 TTTTT
99089352 TGAAATAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
15 1 0.03
16 23 0.70
17 9 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTCTTTTTCTTTT
Found at i:99095695 original size:17 final size:18
Alignment explanation
Indices: 99095642--99095739 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
99095632 AATCATATCT
*
99095642 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
99095661 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
99095679 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
99095696 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
99095714 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
99095731 TCTAAGATT
1 TCTAAGATT
99095740 ACATATCATT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:99095700 original size:35 final size:35
Alignment explanation
Indices: 99095642--99095748 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
99095632 AATCATATCT
99095642 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
99095679 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
99095714 TCTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
99095749 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:99097881 original size:56 final size:57
Alignment explanation
Indices: 99097801--99097928 Score: 152
Period size: 56 Copynumber: 2.3 Consensus size: 57
99097791 CCTTCGAGCT
* * ** * *
99097801 CGCACAC-CAGTGCCGTATTTTTCCAGCTTGCACACATAGTG-TTATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCATATATTTCCAGCA
* * *
99097856 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTG-CATATATTTCCAGCA
99097914 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
99097929 AATCTCGTCA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
55 6 0.10
56 28 0.47
58 26 0.43
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (57 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCATATATTTCCAGCA
Found at i:99097883 original size:29 final size:29
Alignment explanation
Indices: 99097801--99097928 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
99097791 CCTTCGAGCT
* * * *
99097801 CGCACAC-CAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCTTATATTTCCAGCA
* * *
99097829 TGCACACATAGTG--TTATTTTTCCAGCA
1 CGCACACTTAGTGCCTTATATTTCCAGCA
*
99097856 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCTTATATTTCCAGCA
*
99097885 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCTTATATTTCCAGCA
99097914 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
99097929 AATCTCGTCA
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
27 24 0.27
28 6 0.07
29 59 0.66
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCTTATATTTCCAGCA
Found at i:99105029 original size:29 final size:29
Alignment explanation
Indices: 99104997--99105102 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
99104987 ATACCCTTCG
**
99104997 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCGTATTTTTCC
* *
99105026 AGCTTGCACACATAGTGTCGTATTTTTCC
1 AGCTCGCACACATAGTGCCGTATTTTTCC
* * *
99105055 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCGTATTTTTCC
* *
99105084 AGCACGCACACTTAGTGCC
1 AGCTCGCACACATAGTGCC
99105103 AATCTCGTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 65 0.98
30 1 0.02
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCGTATTTTTCC
Found at i:99106943 original size:42 final size:43
Alignment explanation
Indices: 99106839--99106987 Score: 153
Period size: 44 Copynumber: 3.5 Consensus size: 43
99106829 TGTGTTATCG
* *
99106839 TGTAAGACTACGTCTGGGACACTGGCATCG-ACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACACTGGCATCGTA-TT-TGATTTACA
* *
99106883 TGTAAGACCACGTTTGGGACATTGGCATCGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACACTGGCATCGTATTTGATTTACA
* *
99106925 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGA-TTACT
1 TGTAAGACCAC-GTCTGGGACACTGGCATCG-TATTTGATTTACA
* * *
99106968 TATAAGACCACATTTGGGAC
1 TGTAAGACCACGTCTGGGAC
99106988 GTTGGCATTG
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.01
42 29 0.32
43 29 0.32
44 30 0.33
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACACTGGCATCGTATTTGATTTACA
Found at i:99106974 original size:43 final size:43
Alignment explanation
Indices: 99106839--99106987 Score: 151
Period size: 42 Copynumber: 3.5 Consensus size: 43
99106829 TGTGTTATCG
* * *
99106839 TGTAAGACTACGTCTGGGACACTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACACTGGCATCGA-TATTTGA-TTACA
* * *
99106883 TGTAAGACCACGTTTGGGACATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACACTGGCATCGATATTTGATTACA
* *
99106925 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACT
1 TGTAAGACCAC-GTCTGGGACACTGGCATCGATATTTGATTACA
* * *
99106968 TATAAGACCACATTTGGGAC
1 TGTAAGACCACGTCTGGGAC
99106988 GTTGGCATTG
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.34
43 29 0.33
44 28 0.32
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACACTGGCATCGATATTTGATTACA
Found at i:99106994 original size:43 final size:41
Alignment explanation
Indices: 99106885--99106995 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 41
99106875 GATTTACGTG
* * *
99106885 TAAGACCACGTTTGGGACATTGGCATCGTATTTGATTTCATG
1 TAAGACCAC-TTTGGGACGTTGGCATCGTATTTGATTACATA
*
99106927 TAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACTTA
1 TAAGACCACT-T-TGGGAC-GTTGGCATCG-TATTTGATTACATA
99106970 TAAGACCACATTTGGGACGTTGGCAT
1 TAAGACCAC-TTTGGGACGTTGGCAT
99106996 TGTACGAGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
40 1 0.02
41 2 0.03
42 22 0.38
43 30 0.52
44 2 0.03
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (41 bp):
TAAGACCACTTTGGGACGTTGGCATCGTATTTGATTACATA
Done.