Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 325 of 770
Found at i:99473871 original size:27 final size:28
Alignment explanation
Indices: 99473841--99473910 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
99473831 ATAATAAGTC
*
99473841 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
99473868 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
99473896 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
99473911 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:99484404 original size:40 final size:40
Alignment explanation
Indices: 99484359--99484488 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
99484349 CGGAATATAA
99484359 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
99484399 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
99484439 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
99484479 CCGGATATAA
1 CCGGATATAA
99484489 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:99484503 original size:40 final size:40
Alignment explanation
Indices: 99484375--99484525 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
99484365 ATAAGCATGT
* * *
99484375 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
99484415 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
99484455 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
99484495 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
99484526 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:99484509 original size:80 final size:79
Alignment explanation
Indices: 99484375--99484525 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
99484365 ATAAGCATGT
*
99484375 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
99484440 CGGATATAGCCGCTA
65 CGGATATAGCCGCTA
* * ** * *
99484455 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
99484518 CCGGATAT
64 CCGGATAT
99484526 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCGCTA
Found at i:99494076 original size:40 final size:40
Alignment explanation
Indices: 99494021--99494236 Score: 321
Period size: 40 Copynumber: 5.5 Consensus size: 40
99494011 GGATGATAAT
*
99494021 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
99494061 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
99494101 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
99494141 CGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
99494181 CGGGCTATGTACCGAAGGCA-TTGAGTGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
99494220 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
99494237 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 14 0.09
39 15 0.09
40 135 0.82
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:99509211 original size:49 final size:49
Alignment explanation
Indices: 99509153--99509420 Score: 464
Period size: 49 Copynumber: 5.5 Consensus size: 49
99509143 ATGAGATATA
* *
99509153 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
99509202 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
* *
99509251 TATATGTGATAAGGCCTAACGGCCGAGGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
*
99509300 TATATGTGATAAGGCCTAACGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
* *
99509349 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAGAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
99509398 TATATGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
99509421 TAATGTAAAA
Statistics
Matches: 211, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 211 1.00
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:99509572 original size:37 final size:37
Alignment explanation
Indices: 99509522--99509606 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
99509512 GGAATATGTT
*
99509522 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
99509559 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
99509596 CCGGGTAAGAC
1 CCGGGTAAGAC
99509607 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:99515945 original size:27 final size:28
Alignment explanation
Indices: 99515908--99516020 Score: 153
Period size: 27 Copynumber: 4.2 Consensus size: 28
99515898 AGCACGGCTG
* *
99515908 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
99515934 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
99515961 CCAGAAACAAATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
99515989 CTAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
99516016 CCAGA
1 CCAGA
99516021 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.06
27 54 0.70
28 18 0.23
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:99516006 original size:55 final size:54
Alignment explanation
Indices: 99515908--99516021 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 54
99515898 AGCACGGCTG
* *
99515908 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAAATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCA
* *
99515961 CCAGAAACAAATATTTGTGGCAGAGCCACTAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAAACAAATA-TTGTGACAGAGCCACCAGATACAGATA-TTGTGGCAGAGCCA
99516016 CCAGAA
1 CCAGAA
99516022 CGCTTCCTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 4 0.07
54 13 0.24
55 37 0.69
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAAACAAATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCA
Found at i:99519932 original size:27 final size:28
Alignment explanation
Indices: 99519895--99520007 Score: 162
Period size: 27 Copynumber: 4.2 Consensus size: 28
99519885 AGCACGGCTG
* *
99519895 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
99519921 CCAGATACAGATA-TTGTGGCAAAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
99519948 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
99519976 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
99520003 CCAGA
1 CCAGA
99520008 ACACTTCCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.06
27 56 0.71
28 18 0.23
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:99519987 original size:54 final size:55
Alignment explanation
Indices: 99519895--99520008 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 55
99519885 AGCACGGCTG
*
99519895 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAAAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATATTTGTGGCAAAGCCA
* *
99519948 CCAGAAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATACAGATATTTGTGGCAAAGCCA
99520003 CCAGAA
1 CCAGAA
99520009 CACTTCCTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 4 0.07
54 14 0.25
55 37 0.67
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATATTTGTGGCAAAGCCA
Found at i:99521918 original size:15 final size:15
Alignment explanation
Indices: 99521900--99521928 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99521890 CTAAATATAC
99521900 AAAATAATAATAATA
1 AAAATAATAATAATA
99521915 AAAATAATAATAAT
1 AAAATAATAATAAT
99521929 GACAATATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAATAATAATA
Found at i:99525011 original size:48 final size:48
Alignment explanation
Indices: 99524940--99525176 Score: 239
Period size: 48 Copynumber: 5.0 Consensus size: 48
99524930 AGGGTAAATC
* * *
99524940 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCAAG
* * * * * *
99524988 GCTGATGCCATGTCCCAAACATGGTCTTCCGCAAGCTCTCATCTCAAT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAG
* * * **
99525036 GCCGATGCCATTTCCTAGACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCAAG
* * *
99525084 GC-GATGCCATGTCCGAGACATGGTCTTACACTAG-TACACATATCAAT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTCATATCAAG
* * *
99525131 GCTTATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
99525177 CCCAATTGTC
Statistics
Matches: 155, Mismatches: 28, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
46 3 0.02
47 36 0.23
48 114 0.74
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAG
Found at i:99525130 original size:95 final size:96
Alignment explanation
Indices: 99524943--99525175 Score: 267
Period size: 95 Copynumber: 2.4 Consensus size: 96
99524933 GTAAATCGCT
* *
99524943 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATGTCGAGGCTGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGAGGCTGATGCCATGTCCCAAAC
* * * *
99525008 ATGGTCTTCCGCAAGCTCTCATCTCAATGCC
66 ATGGTCTTACACAAGCTCACATATCAATGCC
* * * * *
99525039 GATGCCATTTCCTAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGC-GATGCCATGTCCGAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACAT-ATCGAGGCTGATGCCATGTCCCAA
* *
99525101 ACATGGTCTTACACTAG-TACACATATCAATGCT
64 ACATGGTCTTACACAAGCT-CACATATCAATGCC
* **
99525134 TATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATC
99525176 ACCCAATTGT
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
94 3 0.03
95 71 0.62
96 38 0.33
97 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGAGGCTGATGCCATGTCCCAAAC
ATGGTCTTACACAAGCTCACATATCAATGCC
Found at i:99530197 original size:23 final size:23
Alignment explanation
Indices: 99530166--99530220 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
99530156 GATTCCATCC
*
99530166 AACATACCAAAATG-TCCAACCAA
1 AACACACCAAAATGATCC-ACCAA
** *
99530189 AACACACCAGTATGATCCTCCAA
1 AACACACCAAAATGATCCACCAA
99530212 AACACACCA
1 AACACACCA
99530221 GTATCATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 24 0.89
24 3 0.11
ACGTcount: A:0.47, C:0.35, G:0.05, T:0.13
Consensus pattern (23 bp):
AACACACCAAAATGATCCACCAA
Found at i:99530235 original size:28 final size:29
Alignment explanation
Indices: 99530203--99530282 Score: 119
Period size: 28 Copynumber: 2.8 Consensus size: 29
99530193 CACCAGTATG
* *
99530203 ATCC-TCCAAAACACACCAGTATCATATA
1 ATCCATCCAAAACACACCAGAATAATATA
*
99530231 ATCCTTCC-AAACACACCAGAATAATATA
1 ATCCATCCAAAACACACCAGAATAATATA
99530259 ATCCATCCAAAACACACCAGAATA
1 ATCCATCCAAAACACACCAGAATA
99530283 GCACAAAGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
28 29 0.62
29 18 0.38
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (29 bp):
ATCCATCCAAAACACACCAGAATAATATA
Found at i:99530254 original size:23 final size:23
Alignment explanation
Indices: 99530185--99530282 Score: 63
Period size: 28 Copynumber: 3.8 Consensus size: 23
99530175 AAATGTCCAA
* *
99530185 CCAAAACACACCAGTATGATCCT
1 CCAAAACACACCAGAATAATCCT
99530208 CCAAAACACACCAGTATCATATAATCCTT
1 CCAAAACACACCAG----A-ATAATCC-T
99530237 CC-AAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----A-ATAATCC-T
99530265 CCAAAACACACCAGAATA
1 CCAAAACACACCAGAATA
99530283 GCACAAAGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
23 14 0.22
24 3 0.05
25 1 0.02
28 31 0.49
29 14 0.22
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.17
Consensus pattern (23 bp):
CCAAAACACACCAGAATAATCCT
Found at i:99554020 original size:31 final size:31
Alignment explanation
Indices: 99553984--99554057 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
99553974 GTAGCTTGAG
*
99553984 ACATGCCTGTGTAGGTTGACCGTGTGGTCAC
1 ACATGCCCGTGTAGGTTGACCGTGTGGTCAC
99554015 ACATGCCCGTGTAGGTTGACCGTGTGGTCAC
1 ACATGCCCGTGTAGGTTGACCGTGTGGTCAC
*
99554046 ACACGCCCGTGT
1 ACATGCCCGTGT
99554058 CCCTAACCCG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.16, C:0.27, G:0.31, T:0.26
Consensus pattern (31 bp):
ACATGCCCGTGTAGGTTGACCGTGTGGTCAC
Found at i:99554069 original size:31 final size:31
Alignment explanation
Indices: 99554002--99554070 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
99553992 GTGTAGGTTG
* *** *
99554002 ACCGTGTGGTCACACATGCCCGTGTAGGTTG
1 ACCGTGTGGTCACACACGCCCGTGTACCCTA
99554033 ACCGTGTGGTCACACACGCCCGTGT-CCCTA
1 ACCGTGTGGTCACACACGCCCGTGTACCCTA
99554063 ACCCGTGT
1 A-CCGTGT
99554071 AACTCTCTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 2 0.06
31 30 0.94
ACGTcount: A:0.16, C:0.33, G:0.28, T:0.23
Consensus pattern (31 bp):
ACCGTGTGGTCACACACGCCCGTGTACCCTA
Found at i:99560265 original size:68 final size:68
Alignment explanation
Indices: 99560180--99560317 Score: 233
Period size: 68 Copynumber: 2.0 Consensus size: 68
99560170 TTTAATTTAA
*
99560180 AAGATAATCACTATAATATTATATTAATGAAATACTATTAAGATAAGTATTAAATTAAATCTAAT
1 AAGATAATCACTATAATATTAAATTAATGAAATACTATTAAGATAAGTATTAAATTAAATCTAAT
99560245 ATT
66 ATT
* *
99560248 AAGATAATCAC-ATTAATATTAAATTAATTAAATACTATTAAGATAAGTATTAAATTAAATTTAA
1 AAGATAATCACTA-TAATATTAAATTAATGAAATACTATTAAGATAAGTATTAAATTAAATCTAA
99560312 TATT
65 TATT
99560316 AA
1 AA
99560318 ACTATTAAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 1 0.02
68 65 0.98
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (68 bp):
AAGATAATCACTATAATATTAAATTAATGAAATACTATTAAGATAAGTATTAAATTAAATCTAAT
ATT
Found at i:99560300 original size:37 final size:37
Alignment explanation
Indices: 99560259--99560330 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
99560249 AGATAATCAC
*
99560259 ATTAATATTAAA-TTAAT-TAAATACTATTAAGATAAGT
1 ATTAA-ATTAAATTTAATATAAA-ACTATTAAAATAAGT
*
99560296 ATTAAATTAAATTTAATATTAAACTATTAAAATAA
1 ATTAAATTAAATTTAATATAAAACTATTAAAATAA
99560331 CATTATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 6 0.19
37 22 0.71
38 3 0.10
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (37 bp):
ATTAAATTAAATTTAATATAAAACTATTAAAATAAGT
Found at i:99560301 original size:31 final size:30
Alignment explanation
Indices: 99560192--99560305 Score: 93
Period size: 31 Copynumber: 3.5 Consensus size: 30
99560182 GATAATCACT
* *
99560192 ATAATATTATATTAATGAAATACTATTAAG
1 ATAATATTAAATTAATTAAATACTATTAAG
* * * *
99560222 ATAAGTATTAAATTAAATCTAATATTAAGATAATCAC
1 ATAA-TATTAAATT-AAT-TAA-A-T-A-CTATTAAG
99560259 ATTAATATTAAATTAATTAAATACTATTAAG
1 A-TAATATTAAATTAATTAAATACTATTAAG
99560290 ATAAGTATTAAATTAA
1 ATAA-TATTAAATTAA
99560306 ATTTAATATT
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
30 7 0.11
31 24 0.37
32 4 0.06
33 3 0.05
34 2 0.03
35 4 0.06
36 4 0.06
37 14 0.22
38 3 0.05
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (30 bp):
ATAATATTAAATTAATTAAATACTATTAAG
Found at i:99561674 original size:25 final size:25
Alignment explanation
Indices: 99561636--99561705 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
99561626 GGTTACCGAT
**
99561636 TTTAGCTCTTATGAGCTTATC-GTTA
1 TTTAGCTCGGATGAGCTTA-CGGTTA
99561661 TTTAGCTCGGATGAGCTTACGGTTA
1 TTTAGCTCGGATGAGCTTACGGTTA
* *
99561686 TTCAGCTAGG-TGGAGCTTAC
1 TTTAGCTCGGAT-GAGCTTAC
99561706 CATTTATAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 37 0.95
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (25 bp):
TTTAGCTCGGATGAGCTTACGGTTA
Found at i:99565023 original size:17 final size:18
Alignment explanation
Indices: 99564981--99565029 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
99564971 AGTTGAAAAG
99564981 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
99565000 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
99565017 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
99565030 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:99565917 original size:40 final size:40
Alignment explanation
Indices: 99565851--99566017 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
99565841 AAATTGAATG
* * *
99565851 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
99565890 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99565930 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99565970 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99566010 ATATCCGG
1 ATATCCGG
99566018 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99573033 original size:17 final size:18
Alignment explanation
Indices: 99572991--99573039 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
99572981 AAGTTGAAAG
99572991 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
99573010 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
99573027 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
99573040 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:99573928 original size:40 final size:40
Alignment explanation
Indices: 99573862--99574028 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
99573852 AAATTGAATG
* * *
99573862 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
99573901 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
99573941 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99573981 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99574021 ATATCCGG
1 ATATCCGG
99574029 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99576503 original size:39 final size:39
Alignment explanation
Indices: 99576460--99576648 Score: 116
Period size: 39 Copynumber: 4.8 Consensus size: 39
99576450 TTTAACCGGA
* * *
99576460 TATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGCCCGT
1 TATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGCCCGT
* *
99576499 TATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGAT
1 TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCC-G-T
** * *
99576540 T-TAGTAACTCGCACGAA-TGCCTTCGGGACTTAACCCGGT
1 TATAGCGACTCGCAC-AATTGCCTTCGGGAATTAGCCC-GT
* ** * * * *
99576579 T-TTGTAACTCGCACAAATGCCTTCGGGACTTAACCGGT
1 TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCCGT
* * ** *
99576617 TTTGGTAACTCGCACAAATGCCTTCGGGAATT
1 TATAGCGACTCGCACAATTGCCTTCGGGAATT
99576649 GACCCGGATT
Statistics
Matches: 131, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 6 0.05
39 90 0.69
40 31 0.24
41 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (39 bp):
TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCCGT
Found at i:99576654 original size:78 final size:81
Alignment explanation
Indices: 99576507--99576697 Score: 244
Period size: 78 Copynumber: 2.4 Consensus size: 81
99576497 GTTATAGTGA
* * * * *
99576507 TTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTA
1 TTCGCACAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
*
99576572 ACCCGG-TTTTGTAAC
66 ACCCGGATTTAGTAAC
* * *
99576587 -TCGCACAAATGCCTTCGGGACTTA-ACCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTG
1 TTCGCACAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
*
99576650 ACCCGGATTTAGTCAC
66 ACCCGGATTTAGTAAC
* * *
99576666 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTCGCACAAATGCCTTCGGGACTTAGACCGGA
99576698 CACCATTCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
78 39 0.41
79 29 0.31
80 22 0.23
81 4 0.04
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
TTCGCACAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
ACCCGGATTTAGTAAC
Found at i:99584529 original size:40 final size:40
Alignment explanation
Indices: 99584480--99584725 Score: 122
Period size: 40 Copynumber: 6.1 Consensus size: 40
99584470 CGAAATTTAA
* * *
99584480 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGC
* * *
99584520 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* * ** * *
99584560 CCGAATTTAGTAACTCGCACGAA-TGCCTTCGGGACTTAAC
1 CCGGATATAGCGACTCGCAC-AATTGCCTTCGGGAATTAGC
* * * ** * * * *
99584600 CCGGTTTTGGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* * * * ** *
99584640 CCAGTTTTGGTAACTCGCACAAATGCCTTCGGGAATT-GAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAG-C
* * ** *
99584680 CCGGATTTAGTC-ACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAG-CGAC-TCGCACAATTGCCTTCGGGAATTAGC
99584721 CCGGA
1 CCGGA
99584726 CACCATTCGA
Statistics
Matches: 171, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.02
40 139 0.81
41 28 0.16
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:99584627 original size:80 final size:82
Alignment explanation
Indices: 99584492--99584723 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 82
99584482 GGATATAGCG
* * * * * * * * * *
99584492 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGA-TTCGCACAATTGCCTTCGGGAAT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTAGTAACTTAGCACAAATGCCTTCGGGACT
99584556 TAGCCCGA-ATTTAGTA
66 TAGCCCGAGATTTAGTA
*
99584572 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTT-GCACAAATGCCTTCGGGACT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTAGTAACTTAGCACAAATGCCTTCGGGACT
* * *
99584636 TAACCC-AGTTTTGGTA
66 TAGCCCGAGATTTAGTA
* * * * * *
99584652 ACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTAGTAACTTAGCACAAATGCCTTCGGGACT
99584717 TAGCCCG
66 TAGCCCG
99584724 GACACCATTC
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 100 0.79
81 26 0.20
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (82 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTAGTAACTTAGCACAAATGCCTTCGGGACT
TAGCCCGAGATTTAGTA
Found at i:99586955 original size:52 final size:52
Alignment explanation
Indices: 99586888--99586989 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 52
99586878 AAACCCAATT
* *
99586888 ACATGTATCGCATCCATAATGAACTCGGACCAACTCAACAAACTCGGATGTC
1 ACATGTATCGAATCCATAATGAACTCGAACCAACTCAACAAACTCGGATGTC
* * * * *
99586940 ACATGTGTCGAATCCATTATGAACTCGAACCCACTGAACAAGCTCGGATG
1 ACATGTATCGAATCCATAATGAACTCGAACCAACTCAACAAACTCGGATG
99586990 CTCGCATCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (52 bp):
ACATGTATCGAATCCATAATGAACTCGAACCAACTCAACAAACTCGGATGTC
Found at i:99587006 original size:44 final size:44
Alignment explanation
Indices: 99586951--99587034 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
99586941 CATGTGTCGA
* * * *
99586951 ATCCATTATGAACTCGAACCCACTGAACAAGCTCGGATGCTCGC
1 ATCCATAATGAAATCGAACCAACTCAACAAGCTCGGATGCTCGC
* * *
99586995 ATCCATAATGAAATCGGACCAACTCAACGAGTTCGGATGC
1 ATCCATAATGAAATCGAACCAACTCAACAAGCTCGGATGC
99587035 CTCATACATA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (44 bp):
ATCCATAATGAAATCGAACCAACTCAACAAGCTCGGATGCTCGC
Found at i:99589819 original size:15 final size:15
Alignment explanation
Indices: 99589794--99589868 Score: 87
Period size: 15 Copynumber: 5.0 Consensus size: 15
99589784 GAGATGACAT
*
99589794 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
** *
99589809 GAAGCCCAAGACAAA
1 GAAATCCAAGATAAA
*
99589824 GAAATCCTAGATAAA
1 GAAATCCAAGATAAA
*
99589839 GAAATCCAAGATATA
1 GAAATCCAAGATAAA
*
99589854 GAAATCCAAAATAAA
1 GAAATCCAAGATAAA
99589869 ATATCATAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.59, C:0.16, G:0.13, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:99595026 original size:29 final size:29
Alignment explanation
Indices: 99594964--99595066 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
99594954 GTGACGAGAT
* * *
99594964 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
99594993 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
99595022 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
99595051 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99595067 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:99602993 original size:29 final size:28
Alignment explanation
Indices: 99602931--99603031 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
99602921 GTGACGAGAT
* * *
99602931 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-GATATA
* *
99602960 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGA-TATA
* *
99602989 TGGCACTATGTGTGCGGGCTT-GA-ATCA
1 TGGCACTAAGTGTGCGAGCTTGGATAT-A
99603016 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99603032 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.03
27 16 0.27
28 3 0.05
29 39 0.65
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGGATATA
Found at i:99603038 original size:27 final size:27
Alignment explanation
Indices: 99602961--99603038 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 27
99602951 TGTAATGTAC
*
99602961 GGCACTAAGTGTGCGAGTTTGGACTATAT
1 GGCACTAAGTGTGCGAGATT-GAC-ATAT
* * *
99602990 GGCACTATGTGTGCGGGCTTGA-ATCAT
1 GGCACTAAGTGTGCGAGATTGACAT-AT
*
99603017 GGCACTAAGTGTGCGTGATTGA
1 GGCACTAAGTGTGCGAGATTGA
99603039 GTATTAAGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 21 0.50
28 2 0.05
29 17 0.40
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.29
Consensus pattern (27 bp):
GGCACTAAGTGTGCGAGATTGACATAT
Found at i:99608021 original size:47 final size:47
Alignment explanation
Indices: 99607969--99608261 Score: 478
Period size: 47 Copynumber: 6.2 Consensus size: 47
99607959 AAGATATGTG
99607969 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
99608016 TATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
99608063 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
99608110 TATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
99608157 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * * *
99608204 TATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
99608251 AATGTGATAAG
1 TATGTGATAAG
99608262 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 227 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:99608082 original size:94 final size:94
Alignment explanation
Indices: 99607969--99608261 Score: 541
Period size: 94 Copynumber: 3.1 Consensus size: 94
99607959 AAGATATGTG
* *
99607969 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAAT
99608034 GGCCGATGTGATGAATGTGAAAGTGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATA
99608063 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAAT
99608128 GGCCGATGTGATGAATGTGAAAGTGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATA
*
99608157 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAAT
*
99608222 GGCCGATGTGATGGATGTGAAAGTGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATA
*
99608251 AATGTGATAAG
1 TATGTGATAAG
99608262 TCCCGAAGGG
Statistics
Matches: 194, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 194 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:99610566 original size:48 final size:48
Alignment explanation
Indices: 99610511--99610840 Score: 281
Period size: 48 Copynumber: 6.9 Consensus size: 48
99610501 GGTGAATTGC
* * * *
99610511 CGATGCCATGAT-CCAAACATGGTCTTACACTGGCTCACATGTTGAGGA
1 CGATGCCATG-TCCCAGACATGGTCTTACACTAGCTCACATATTAAGGA
* * * * * *
99610559 CGATGCCATGCCCCAGACATGTTCTTACACTAGCTCTCATCTCAATG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGA
* * ** *
99610606 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGA
* * *
99610655 CGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATA-TCAGTGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAG-GA
* * * * * * * *
99610703 TGATGCCATGTCCCAGACATGGCCTTACATTGGCGCACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGA
* * * * * * *
99610751 CAATGCCATG-CCTGAAACATGGTCTTACACTGGCGCACATATTAATGC
1 CGATGCCATGTCC-CAGACATGGTCTTACACTAGCTCACATATTAAGGA
* *
99610799 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
99610841 CACCCAAATG
Statistics
Matches: 231, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
47 5 0.02
48 222 0.96
49 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGA
Found at i:99610681 original size:96 final size:94
Alignment explanation
Indices: 99610512--99610839 Score: 320
Period size: 96 Copynumber: 3.4 Consensus size: 94
99610502 GTGAATTGCC
* ** *
99610512 GATGCCATGAT-CCAAACATGGTCTTACACTGGCTCACATGTTGAGGACGATGCCATGCCCCAGA
1 GATGCCATG-TCCCAAACATGGTCTTACACTAGCTCACATAATGTGG-CGATGCCATG-CCCAGA
* * * *
99610576 CATGTTCTTACACTAGCTCTCATCTCAATGCT
63 CATGGTCTTACACTAGCACACATATCAATGCT
* *
99610608 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAATGTGG-CGATGCCATG-CCCAGAC
* * *
99610673 ATGGTCTTACAGTAGCACACATATCAGTGAT
64 ATGGTCTTACACTAGCACACATATCAATGCT
* * * * * * * *
99610704 GATGCCATGTCCCAGACATGGCCTTACATTGGCGCACATATCAATGT--CAATGCCATGCCTGAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCAC--AT-AATGTGGCGATGCCATGCC-CAG
* * * *
99610767 ACATGGTCTTACACTGGCGCACATATTAATGCC
62 ACATGGTCTTACACTAGCACACATATCAATGCT
*
99610800 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
99610840 TCACCCAAAT
Statistics
Matches: 192, Mismatches: 35, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
93 1 0.01
94 2 0.01
95 3 0.02
96 179 0.93
98 2 0.01
99 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (94 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAATGTGGCGATGCCATGCCCAGACAT
GGTCTTACACTAGCACACATATCAATGCT
Found at i:99610771 original size:144 final size:143
Alignment explanation
Indices: 99610508--99610842 Score: 381
Period size: 144 Copynumber: 2.3 Consensus size: 143
99610498 GATGGTGAAT
* * * *
99610508 TGCCGATGCCATGAT-CCAAACATGGTCTTACACTGGCTCACATGTTGAGGACGATGCCATGCCC
1 TGCCGATGCCATG-TCCCAAACATGGTCTTACACTAGCACACAT-ATCAGGACGATGCCATGCCC
** * * * * *
99610572 CAGACATGTTCTTACACTAGCTCTCATCTCAATGCTGATGCCATGTCCCAGACATGGTCTTACAC
64 CAGACATGGCCTTACACTAGCGCACATATCAATGCTAATGCCATGTCCCAAACATGGTCTTACAC
* * *
99610637 TAGCTCTCATAAT-G
129 TAGCGCACATAATAA
* * * *
99610651 TGGCCGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATATCAGTGATGATGCCATGTCC
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAG-GACGATGCCATGCCC
* * *
99610716 CAGACATGGCCTTACATTGGCGCACATATCAATG-TCAATGCCATG-CCTGAAACATGGTCTTAC
64 CAGACATGGCCTTACACTAGCGCACATATCAATGCT-AATGCCATGTCC-CAAACATGGTCTTAC
* *
99610779 ACTGGCGCACATATTAA
127 ACTAGCGCACATAATAA
99610796 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
99610843 CCCAAATGTC
Statistics
Matches: 161, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
143 8 0.05
144 152 0.94
145 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (143 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAGGACGATGCCATGCCCCA
GACATGGCCTTACACTAGCGCACATATCAATGCTAATGCCATGTCCCAAACATGGTCTTACACTA
GCGCACATAATAA
Found at i:99617389 original size:28 final size:27
Alignment explanation
Indices: 99617326--99617395 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
99617316 ATAGTGAGTC
*
99617326 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
99617353 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
99617381 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
99617396 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:99618917 original size:34 final size:34
Alignment explanation
Indices: 99618845--99618917 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
99618835 GCCCTTTTCT
* * * *
99618845 CAGTAATAGAATCAGTCTGGGCCTGATCCCATTT
1 CAGTAACAGAATCAGTCTGGGCCTGAGCCCAGTA
* * *
99618879 CAGTAACAGAATCAGTCTGGGCTTTAGCCTAGTA
1 CAGTAACAGAATCAGTCTGGGCCTGAGCCCAGTA
99618913 CAGTA
1 CAGTA
99618918 CAGTATGCAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTAACAGAATCAGTCTGGGCCTGAGCCCAGTA
Found at i:99619660 original size:24 final size:25
Alignment explanation
Indices: 99619617--99619669 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
99619607 CGACAACCGA
99619617 CTTTTTGACTTTTCAACCTTT-CAG
1 CTTTTTGACTTTTCAACCTTTGCAG
* *
99619641 CTTTTTGACTTTTTAGCCTTTGCAG
1 CTTTTTGACTTTTCAACCTTTGCAG
99619666 -TTTT
1 CTTTT
99619670 ACATCCAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.13, C:0.21, G:0.11, T:0.55
Consensus pattern (25 bp):
CTTTTTGACTTTTCAACCTTTGCAG
Found at i:99621728 original size:29 final size:29
Alignment explanation
Indices: 99621666--99621765 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 29
99621656 GTGACGAGAT
* * *
99621666 TGGCACTGAGTGTGTGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* * *
99621695 CGGCACTAAGTGTGCGAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* *
99621724 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
99621753 TGGCACTAAGTGT
1 TGGCACTAAGTGT
99621766 TCGTGATTGA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.02
29 54 0.96
30 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:99629724 original size:29 final size:29
Alignment explanation
Indices: 99629662--99629764 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
99629652 GTGACGAGAT
* * *
99629662 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
99629691 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
99629720 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
99629749 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99629765 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:99634756 original size:34 final size:34
Alignment explanation
Indices: 99634684--99634756 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
99634674 ACCGCTTTCT
* *
99634684 CAGTAACAGAATCAGTCTGGGCCTGAGCCCATTT
1 CAGTAACAGAATCAGTCTGGGCCTGAGCCCAATA
* * * *
99634718 CAGTAACAGAATCAGTTTGGGCTTTAGCCTAATA
1 CAGTAACAGAATCAGTCTGGGCCTGAGCCCAATA
99634752 CAGTA
1 CAGTA
99634757 CAGTATGCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
CAGTAACAGAATCAGTCTGGGCCTGAGCCCAATA
Found at i:99641512 original size:40 final size:40
Alignment explanation
Indices: 99641450--99641680 Score: 304
Period size: 40 Copynumber: 5.8 Consensus size: 40
99641440 TGGATGCTAA
* * * *
99641450 CGGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTC
* * *
99641490 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACAAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTC
*
99641530 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTC
* *
99641570 CGGGCTAAGTCCCGAAGGCTTTTGTG-TGAGTTACAAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAATTC
* * *
99641610 CGGGCTAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAT-TC
*
99641650 CGGGCTAAGTCCCGAAGGCATCTGTGCTAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
99641681 GACCATATCT
Statistics
Matches: 168, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 166 0.99
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATTC
Found at i:99641689 original size:40 final size:41
Alignment explanation
Indices: 99641450--99641744 Score: 284
Period size: 40 Copynumber: 7.4 Consensus size: 41
99641440 TGGATGCTAA
* * * *
99641450 CGGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
* * *
99641490 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTA-CAAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
*
99641530 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
* * * *
99641570 CGGGCTAAGTCCCGAAGGCTTTTGTGTGAGTTA-CAAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
* *
99641610 CGGGCTAAGCCCCGAAGGCATTTGTGCAAGTTATTATA-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
* * * **
99641650 CGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATA-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
* * * * * **
99641690 TGGACTAAGACCTGAAGGC-CTTGTGCGAGTGGTTATA-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
*
99641729 C-GGCTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAG
99641745 ATAATTCGGT
Statistics
Matches: 213, Mismatches: 38, Indels: 10
0.82 0.15 0.04
Matches are distributed among these distances:
38 11 0.05
39 16 0.08
40 183 0.86
41 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATTC
Found at i:99641698 original size:80 final size:80
Alignment explanation
Indices: 99641450--99641744 Score: 323
Period size: 80 Copynumber: 3.7 Consensus size: 80
99641440 TGGATGCTAA
* * *
99641450 CGGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
* *
99641515 ACGAGTTACAAATTC
66 GCTAGTTACAAATTC
* * *
99641530 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCTTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
99641595 G-TGAGTTACAAATTC
66 GCT-AGTTACAAATTC
* * * *
99641610 CGGGCTAAGCCCCGAAGGCATTTGTGCAAGTTATT-ATATCCGGGCTAAGTCCCGAAGGCATCTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATTAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
* *
99641674 TGCTAGTGAC-CATATC
65 TGCTAGTTACAAAT-TC
* * * * * * *
99641690 TGGACTAAGACCTGAAGGC-CTTGTGCGAGTGGTT-ATATCC-GGCTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATTAAT-TCCGGGCTAAGTCCCGAAG
99641745 ATAATTCGGT
Statistics
Matches: 187, Mismatches: 24, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
78 14 0.07
79 21 0.11
80 151 0.81
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTTACAAATTC
Found at i:99648261 original size:29 final size:29
Alignment explanation
Indices: 99648228--99648387 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
99648218 GTGACGAGAT
99648228 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99648257 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99648286 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
99648315 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
99648344 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
99648373 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
99648388 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:99656305 original size:29 final size:29
Alignment explanation
Indices: 99656272--99656431 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
99656262 GTGACGAGAT
99656272 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99656301 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99656330 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
99656359 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
99656388 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
99656417 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
99656432 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:99660229 original size:40 final size:40
Alignment explanation
Indices: 99660172--99660436 Score: 293
Period size: 40 Copynumber: 6.7 Consensus size: 40
99660162 CTAACGGGGT
* * * *
99660172 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
99660212 TAAGTCCCGAAGGCATTTGTACGAGTTACAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
99660252 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTACGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
99660292 TAAGTCCCGAAGGCTTTTGTGCGAGTTACAAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
99660332 TAAGCCCCGAAGGCATTTGTGCAAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * * * *
99660372 TAAGTCCCGAAGGCATCTATGCTAGTGAC-CATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
99660412 TAAGACCCGAAGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
99660437 GGTTATATCT
Statistics
Matches: 191, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
39 9 0.05
40 182 0.95
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:99667631 original size:30 final size:30
Alignment explanation
Indices: 99667595--99667725 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
99667585 GACAAGATTG
* * * * *
99667595 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
99667625 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
99667653 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
99667683 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
99667712 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
99667726 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:99667686 original size:58 final size:58
Alignment explanation
Indices: 99667595--99667725 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
99667585 GACAAGATTG
* * * * * *
99667595 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
99667653 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
99667712 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
99667726 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:99677858 original size:40 final size:40
Alignment explanation
Indices: 99677803--99678012 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
99677793 AACATTGGAA
99677803 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99677843 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99677883 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
99677923 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
99677962 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
99678003 CTATATCCGG
1 ATATATCCGG
99678013 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:99684572 original size:40 final size:40
Alignment explanation
Indices: 99684513--99684654 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
99684503 AAATTGAATG
* * *
99684513 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
99684553 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
99684593 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
99684633 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
99684655 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:99684655 original size:40 final size:39
Alignment explanation
Indices: 99684552--99684680 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
99684542 TGCTGGAAAT
* * *
99684552 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
99684592 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
99684632 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
99684672 TATATCCGG
1 TATATCCGG
99684681 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:99686601 original size:28 final size:28
Alignment explanation
Indices: 99686570--99686811 Score: 209
Period size: 28 Copynumber: 8.5 Consensus size: 28
99686560 CTGACTGATT
*
99686570 TCGCACACATAGTGCTCGATTAAAGAGC
1 TCGCACACATAGTGCTCGATTAAAGAAC
*
99686598 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
99686626 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
99686655 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * *
99686683 TCGCACATATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* * *
99686712 TCGCACGCATAGTGCTTGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
99686740 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * * *
99686769 TGGCACACATAGTGCTCGGTTGAAGAGC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
99686797 TTGCACACACAGTGC
1 TCGCACACATAGTGC
99686812 CTCATAATTC
Statistics
Matches: 167, Mismatches: 40, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
27 2 0.01
28 101 0.60
29 62 0.37
30 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:99686668 original size:57 final size:57
Alignment explanation
Indices: 99686570--99686815 Score: 343
Period size: 57 Copynumber: 4.3 Consensus size: 57
99686560 CTGACTGATT
* * *
99686570 TCGCACACATAGTG-CTCGATTA-AAGAGCTCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTACCA-ATCTCGCACACATAGTGCTCGATTGAAGAAC
99686626 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGTGCTCGATTGAAGAAC
* * *
99686683 TCGCACATATAGTGCCTCAATTACCAATCTCGCACGCATAGTGCTTGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGTGCTCGATTGAAGAAC
* ** * * *
99686740 TCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGAAGAGC
1 TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGTGCTCGATTGAAGAAC
* *
99686797 TTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
99686816 TAATTCCAGC
Statistics
Matches: 171, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
56 14 0.08
57 156 0.91
58 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (57 bp):
TCGCACACATAGTGCCTCAATTACCAATCTCGCACACATAGTGCTCGATTGAAGAAC
Found at i:99686888 original size:40 final size:40
Alignment explanation
Indices: 99686821--99687016 Score: 324
Period size: 40 Copynumber: 4.9 Consensus size: 40
99686811 CCTCATAATT
* *
99686821 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
*
99686860 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
99686900 CCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
99686940 CCAGCACGAATGCTCTTCGGGACTTAGCTCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
99686980 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
99687017 TAACTCTCAA
Statistics
Matches: 147, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.10
40 133 0.90
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:99691407 original size:32 final size:32
Alignment explanation
Indices: 99691371--99691454 Score: 150
Period size: 32 Copynumber: 2.6 Consensus size: 32
99691361 TTTTTTGTTA
99691371 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
1 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
99691403 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
1 CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
* *
99691435 TATGATTTTTGGAGTAAGTT
1 CATGATTTTAGGAGTAAGTT
99691455 TAATAGGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.25, C:0.02, G:0.30, T:0.43
Consensus pattern (32 bp):
CATGATTTTAGGAGTAAGTTAAGTGTTTGTGG
Found at i:99694845 original size:20 final size:20
Alignment explanation
Indices: 99694778--99694853 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 20
99694768 TTAATTCAAG
* * *
99694778 GAAAAAGTATAAAAAATCTC
1 GAAAAATTATAAAAAATTTT
*
99694798 AAAAAATTATAAAAAATTTT
1 GAAAAATTATAAAAAATTTT
* **
99694818 GAAGAATTATTTAAAATTTT
1 GAAAAATTATAAAAAATTTT
99694838 -ATAAAATTA-AAAAAAT
1 GA-AAAATTATAAAAAAT
99694854 ATATTAATTG
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
19 6 0.14
20 38 0.86
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (20 bp):
GAAAAATTATAAAAAATTTT
Found at i:99699551 original size:18 final size:18
Alignment explanation
Indices: 99699530--99699586 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
99699520 TATTTTTTTT
*
99699530 AAATTTTAAAATATATAA
1 AAATTATAAAATATATAA
*
99699548 AAATTATAAATTAT-TAA
1 AAATTATAAAATATATAA
*
99699565 AAAGTATAAAA-ATATTAA
1 AAATTATAAAATATA-TAA
99699583 AAAT
1 AAAT
99699587 GATTTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 2 0.06
17 12 0.38
18 18 0.56
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AAATTATAAAATATATAA
Found at i:99699566 original size:26 final size:25
Alignment explanation
Indices: 99699529--99699577 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
99699519 TTATTTTTTT
99699529 TAAATTTTAAAATA-TATAAAAATTA
1 TAAATTTTAAAA-AGTATAAAAATTA
99699554 TAAATTATTAAAAAGTATAAAAAT
1 TAAATT-TTAAAAAGTATAAAAAT
99699578 ATTAAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAATTTTAAAAAGTATAAAAATTA
Found at i:99699583 original size:26 final size:24
Alignment explanation
Indices: 99699527--99699583 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 24
99699517 AATTATTTTT
99699527 TTTAAATTTTAAAATATATAAAAA
1 TTTAAATTTTAAAATATATAAAAA
99699551 TTATAAATTATTAAAA-AGTATAAAAA
1 TT-TAAATT-TTAAAATA-TATAAAAA
99699577 TATTAAA
1 T-TTAAA
99699584 AATGATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 2 0.07
25 7 0.24
26 19 0.66
27 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
TTTAAATTTTAAAATATATAAAAA
Found at i:99699741 original size:31 final size:31
Alignment explanation
Indices: 99699706--99699773 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
99699696 GAGGTGATTT
* * *
99699706 GACAAACGACGCAAATTTAAGAACTACAAGA
1 GACAAACAACACAAATTTAAGAACTAAAAGA
*
99699737 GACAAACAACATAAATTTAAGAACTAAAAGA
1 GACAAACAACACAAATTTAAGAACTAAAAGA
*
99699768 GTCAAA
1 GACAAA
99699774 AAATTAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.56, C:0.16, G:0.13, T:0.15
Consensus pattern (31 bp):
GACAAACAACACAAATTTAAGAACTAAAAGA
Found at i:99700865 original size:25 final size:24
Alignment explanation
Indices: 99700817--99700865 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
99700807 TTTTAACAAA
* *
99700817 AAATAAAATTTTTACAACATAAAT
1 AAATAAAATTTTTACAAAAAAAAT
99700841 AAATAAAATTTTTAACAAAAAAAAT
1 AAATAAAATTTTT-ACAAAAAAAAT
99700866 CAATTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATAAAATTTTTACAAAAAAAAT
Found at i:99705473 original size:64 final size:64
Alignment explanation
Indices: 99705307--99705479 Score: 179
Period size: 68 Copynumber: 2.6 Consensus size: 64
99705297 TGGATGATAC
* * * *
99705307 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGAGCTAC-
99705372 AG
63 AG
* * * *
99705374 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGAGCTA
99705438 C-G
62 CAG
*
99705440 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
99705480 GGCTACTATG
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 48 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTGTACAAGAGAGCTACAG
Found at i:99708315 original size:93 final size:93
Alignment explanation
Indices: 99708203--99708374 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99708193 CGCCCATAAG
* *
99708203 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99708268 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
99708296 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99708361 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
99708375 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99708371 original size:46 final size:46
Alignment explanation
Indices: 99708196--99708371 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
99708186 TGTAACCCGC
* * *
99708196 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99708242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99708292 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99708335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99708372 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99715829 original size:47 final size:49
Alignment explanation
Indices: 99715709--99715886 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 49
99715699 TGTAACCCGC
* * *
99715709 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTT-GCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
99715754 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
99715804 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
99715847 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
99715887 TCAACCATCC
Statistics
Matches: 112, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 36 0.32
46 29 0.26
47 30 0.27
48 3 0.03
49 1 0.01
50 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:99715874 original size:93 final size:92
Alignment explanation
Indices: 99715716--99715886 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
99715706 CGCCCATAAG
* *
99715716 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAA
99715781 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
99715808 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
99715873 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
99715887 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 31 0.41
93 44 0.59
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99717386 original size:93 final size:93
Alignment explanation
Indices: 99717274--99717445 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99717264 CGCCCATAAG
* *
99717274 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99717339 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
99717367 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99717432 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
99717446 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99717442 original size:46 final size:46
Alignment explanation
Indices: 99717267--99717442 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
99717257 TGTAACCCGC
* * *
99717267 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99717313 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99717363 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99717406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99717443 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99723338 original size:38 final size:38
Alignment explanation
Indices: 99723273--99723421 Score: 221
Period size: 38 Copynumber: 3.9 Consensus size: 38
99723263 TATGGTAACC
* *
99723273 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAAT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAAT
*
99723311 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-T
* *
99723350 CGC-CAATTGCCTTCGGGCTTAGCCCGGATATCATACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
99723387 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
99723422 TCGAACATTC
Statistics
Matches: 103, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
37 4 0.04
38 86 0.83
39 13 0.13
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
Found at i:99731381 original size:38 final size:39
Alignment explanation
Indices: 99731316--99731465 Score: 234
Period size: 38 Copynumber: 3.9 Consensus size: 39
99731306 TATGGTAACC
* *
99731316 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
99731355 -GCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
99731393 CGC-CAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
99731431 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
99731466 TCGAACATTC
Statistics
Matches: 104, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
38 63 0.61
39 41 0.39
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:99736286 original size:93 final size:93
Alignment explanation
Indices: 99736174--99736345 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99736164 CGCCCATAAG
* *
99736174 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99736239 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
99736267 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99736332 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
99736346 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99736342 original size:46 final size:46
Alignment explanation
Indices: 99736167--99736342 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
99736157 TGTAACCCGC
* * *
99736167 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99736213 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99736263 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99736306 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99736343 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99741554 original size:40 final size:40
Alignment explanation
Indices: 99741509--99741638 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
99741499 CGGAATACAA
*
99741509 CCGGATATAACCA-TGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACGAATGCCTTCGGGTCTTAGC
* * *
99741549 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
99741589 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
99741629 CCGGATATAA
1 CCGGATATAA
99741639 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.03
40 74 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:99743370 original size:40 final size:40
Alignment explanation
Indices: 99743315--99743417 Score: 179
Period size: 40 Copynumber: 2.6 Consensus size: 40
99743305 ACAGTTATGG
*
99743315 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACTA
1 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
99743355 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
1 TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
* *
99743395 TATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCCAAAACCCGAAGGC
99743418 CTTGTGCGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.19
Consensus pattern (40 bp):
TATCCGGGCCAAAACCCGAAGGCATTTATGCTAGTGACCA
Found at i:99751421 original size:40 final size:40
Alignment explanation
Indices: 99751366--99751569 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 40
99751356 TGAATGATAC
* * * *
99751366 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
*
99751406 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGATTATAT
* ** *
99751446 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* * ** *
99751486 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
99751526 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
99751566 CCGG
1 CCGG
99751570 TTGAATCCCG
Statistics
Matches: 143, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 135 0.94
41 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:99751568 original size:80 final size:80
Alignment explanation
Indices: 99751366--99751569 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 80
99751356 TGAATGATAC
* * *
99751366 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
99751431 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * ** * *
99751446 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
99751510 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* * *
99751526 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
99751570 TTGAATCCCG
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
80 98 0.97
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:99757191 original size:40 final size:40
Alignment explanation
Indices: 99757121--99757271 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 40
99757111 CTTTGTGTTA
* * * * * *
99757121 AGTGACTATATCCGGACTAAGATCCAAAGGCAATTATGCG
1 AGTGACTATATCCGGGCCAAAACCCGAAGGCATTTATGCG
* * * *
99757161 AGTTA-TGGTATCCGGGCCAAAACCTGAAGGCATTTATGCT
1 AGTGACT-ATATCCGGGCCAAAACCCGAAGGCATTTATGCG
*
99757201 AGTGACTATATCCGGGCCAAAACCCGAAGGCATTTATGCT
1 AGTGACTATATCCGGGCCAAAACCCGAAGGCATTTATGCG
* * * *
99757241 AGTGACCATATCTGGGCTAAGACCCGAAGGC
1 AGTGACTATATCCGGGCCAAAACCCGAAGGC
99757272 CTTGTGCGAA
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 90 0.98
41 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (40 bp):
AGTGACTATATCCGGGCCAAAACCCGAAGGCATTTATGCG
Found at i:99757270 original size:80 final size:80
Alignment explanation
Indices: 99757088--99757271 Score: 190
Period size: 80 Copynumber: 2.3 Consensus size: 80
99757078 TATTCGAATG
* * * * * *
99757088 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGTTAAGTGACTATATCCGGACTAAGATCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCTTTATGCTAAGTGACTATATCCGGACCAAAACCCAAAGGCA
* **
99757153 ATTATGCGAGTTATG
66 ATTATGCGAGTGACC
* * * * * *
99757168 GTATCCGGGCCAAAACCTGAAGGCATTTATGCT-AGTGACTATATCCGGGCCAAAACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTATGCTAAGTGACTATATCCGGACCAAAACCCAAAGGC
* *
99757232 ATTTATGCTAGTGACC
65 AATTATGCGAGTGACC
*
99757248 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
99757272 CTTGTGCGAA
Statistics
Matches: 81, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
80 75 0.93
81 6 0.07
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTATGCTAAGTGACTATATCCGGACCAAAACCCAAAGGCA
ATTATGCGAGTGACC
Found at i:99759031 original size:2 final size:2
Alignment explanation
Indices: 99759024--99759048 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
99759014 TCATGACATG
99759024 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
99759049 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99763424 original size:50 final size:49
Alignment explanation
Indices: 99763355--99763681 Score: 329
Period size: 50 Copynumber: 6.7 Consensus size: 49
99763345 CACATAGTAA
* * *
99763355 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC-CACATATC
* *
99763405 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC-CACATATC
*
99763455 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC-CACATATC
** * * * *
99763505 GATGCCAATGCCATGTTTCAGACATGGTCTTACATGGGAT-CTCGTATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCCACATATC
* * * * * * * * *
99763553 GGTGCCGATGTCATGTCCCAAACATGGTATTATACGAGA-CCTCATCTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCCACATATC
* * * * * *
99763601 GATGCCGATGCCATATCCCAGATATGGTCTTATACGGGGT-CTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCCACATATC
* * *
99763649 GATGCCAATCCCATGTCCTAG-CATGGTATTACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACA
99763682 TAGGACCTTA
Statistics
Matches: 234, Mismatches: 41, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
47 9 0.04
48 93 0.40
50 132 0.56
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCCACATATC
Found at i:99763528 original size:100 final size:98
Alignment explanation
Indices: 99763355--99763681 Score: 367
Period size: 100 Copynumber: 3.3 Consensus size: 98
99763345 CACATAGTAA
* * * * *
99763355 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACATATCGATGCCAATGCCATG
1 GATGCCAATGCCATGTCCCAGACATGGTATTACACGGGATCTCA-ATATCGATGCCAATGCCATG
99763420 TCCCAGACATGGTCTTACATGGGATCTCATATATC
65 TCCCAGACATGGTCTTACATGGGATCTC-TATATC
*
99763455 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATATCGATGCCAATGCCATG
1 GATGCCAATGCCATGTCCCAGACATGGTATTACACGGGATCTCA-ATATCGATGCCAATGCCATG
**
99763520 TTTCAGACATGGTCTTACATGGGATCTCGTAT-T-
65 TCCCAGACATGGTCTTACATGGGATCTC-TATATC
* * * * * * * * * *
99763553 GGTGCCGATGTCATGTCCCAAACATGGTATTATACGAGACCTC-ATCTCGATGCCGATGCCATAT
1 GATGCCAATGCCATGTCCCAGACATGGTATTACACGGGATCTCAATATCGATGCCAATGCCATGT
* * * *
99763617 CCCAGATATGGTCTTATACGGGGTCTC-ATATC
66 CCCAGACATGGTCTTACATGGGATCTCTATATC
* *
99763649 GATGCCAATCCCATGTCCTAG-CATGGTATTACA
1 GATGCCAATGCCATGTCCCAGACATGGTATTACA
99763682 TAGGACCTTA
Statistics
Matches: 193, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
94 2 0.01
95 12 0.06
96 54 0.28
98 35 0.18
99 1 0.01
100 89 0.46
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (98 bp):
GATGCCAATGCCATGTCCCAGACATGGTATTACACGGGATCTCAATATCGATGCCAATGCCATGT
CCCAGACATGGTCTTACATGGGATCTCTATATC
Found at i:99770826 original size:68 final size:70
Alignment explanation
Indices: 99770754--99770951 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
99770744 ACACCCTGTA
* * * *
99770754 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
99770816 ATAAAT
65 ATAAAT
*
99770822 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
99770887 ATAAAT
65 ATAAAT
*
99770893 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
99770952 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:99770865 original size:41 final size:41
Alignment explanation
Indices: 99770820--99770937 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99770810 TGAAAGATAA
99770820 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99770861 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99770891 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99770932 ATGTAG
1 ATGTAG
99770938 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99770877 original size:71 final size:71
Alignment explanation
Indices: 99770788--99770951 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99770778 GAGATGTATC
99770788 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99770853 AGGACA
66 AGGACA
99770859 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99770924 AGGACA
66 AGGACA
99770930 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99770952 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99777310 original size:28 final size:28
Alignment explanation
Indices: 99777278--99777376 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
99777268 GCAATAAGCC
*
99777278 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
99777306 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
99777334 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
99777363 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99777377 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:99784964 original size:28 final size:28
Alignment explanation
Indices: 99784932--99785030 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
99784922 GCAATAAGCC
*
99784932 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
99784960 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
99784988 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
99785017 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99785031 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:99790049 original size:29 final size:29
Alignment explanation
Indices: 99789987--99790089 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
99789977 GTGACGAGAT
* * *
99789987 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
99790016 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
99790045 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
99790074 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99790090 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:99794369 original size:93 final size:93
Alignment explanation
Indices: 99794257--99794428 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
99794247 CGCCCATAAG
***
99794257 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99794322 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
99794350 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99794415 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
99794429 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99794425 original size:46 final size:46
Alignment explanation
Indices: 99794250--99794425 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
99794240 TGTAACCCGC
* ***
99794250 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99794296 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99794346 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99794389 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99794426 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99801046 original size:47 final size:46
Alignment explanation
Indices: 99800981--99801154 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 46
99800971 TATGAGACCC
99800981 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACATTGAGACGA-AGCT
* * * *
99801029 AGTGTAAGA-CATATCTGGGACATCCATC-AGCCTTGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGA-CATTGAGACG-AAGCT
* * * *
99801075 AGTGTAAGA-CATGTCTGGGACATACATCCAC-TACGAGATGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGCATCGACAT-TGAGACGA-AGCT
99801120 GAGTGTAAGACCATGTCTGGGACATGGCATCGACA
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGACA
99801155 CCTTACCCAC
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
45 3 0.03
46 59 0.56
47 29 0.27
48 15 0.14
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACATTGAGACGAAGCT
Found at i:99802252 original size:20 final size:21
Alignment explanation
Indices: 99802213--99802252 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
99802203 GTCGAGTTGG
99802213 TCACACAGGCGTGTTGCCCTT
1 TCACACAGGCGTGTTGCCCTT
*
99802234 TCACACGGGCGTG-TGCCCT
1 TCACACAGGCGTGTTGCCCT
99802253 ATCTTAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.35, G:0.28, T:0.25
Consensus pattern (21 bp):
TCACACAGGCGTGTTGCCCTT
Found at i:99803768 original size:50 final size:50
Alignment explanation
Indices: 99803706--99803803 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
99803696 ATTTGTGTCA
99803706 AATTGAACTATTGCTTGTATATATATGTTCAAGTCGAATTTGTTTAAGCG
1 AATTGAACTATTGCTTGTATATATATGTTCAAGTCGAATTTGTTTAAGCG
99803756 AATTGAACTATTGCTTGTATATATATGTTCAAGTCGAATTTGTTTAAG
1 AATTGAACTATTGCTTGTATATATATGTTCAAGTCGAATTTGTTTAAG
99803804 TATGGAGAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (50 bp):
AATTGAACTATTGCTTGTATATATATGTTCAAGTCGAATTTGTTTAAGCG
Found at i:99810560 original size:26 final size:26
Alignment explanation
Indices: 99810461--99810568 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
99810451 TAATACAAAT
*
99810461 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
99810487 TGATAATGGGCTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
99810513 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
99810539 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
99810565 TGAT
1 TGAT
99810569 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:99813979 original size:28 final size:29
Alignment explanation
Indices: 99813947--99814045 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
99813937 ATAATAAGCC
*
99813947 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
99813975 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
99814003 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
99814032 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99814046 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:99822819 original size:39 final size:39
Alignment explanation
Indices: 99822765--99822908 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
99822755 GAATGTTCGA
99822765 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
99822804 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
99822843 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
99822882 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
99822909 CTTTGTGTGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:99830835 original size:64 final size:64
Alignment explanation
Indices: 99830667--99830848 Score: 169
Period size: 64 Copynumber: 2.8 Consensus size: 64
99830657 ACATAATTTG
* * * *
99830667 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATCTCGT
99830729 A
64 A
* * * * *
99830730 GCTCTC--GTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCGT-
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATC-TC
99830792 GTA
62 GTA
* *
99830795 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCTACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT
99830849 CATAATGTCT
Statistics
Matches: 95, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
60 1 0.01
61 10 0.11
63 6 0.06
64 49 0.52
65 14 0.15
66 3 0.03
67 12 0.13
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCTCGTA
Found at i:99833816 original size:93 final size:93
Alignment explanation
Indices: 99833704--99833875 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99833694 CGCCCATAAG
* *
99833704 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99833769 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
99833797 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99833862 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
99833876 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99833872 original size:46 final size:46
Alignment explanation
Indices: 99833697--99833872 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
99833687 TGTAACCCGC
* * *
99833697 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99833743 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99833793 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99833836 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99833873 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99841394 original size:93 final size:93
Alignment explanation
Indices: 99841282--99841453 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
99841272 CGCCCATAAG
* *
99841282 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99841347 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
99841375 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
99841440 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
99841454 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:99841450 original size:46 final size:46
Alignment explanation
Indices: 99841275--99841450 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
99841265 TGTAACCCGC
* * *
99841275 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
99841321 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
99841371 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
99841414 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
99841451 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:99849563 original size:51 final size:52
Alignment explanation
Indices: 99849442--99849574 Score: 182
Period size: 51 Copynumber: 2.6 Consensus size: 52
99849432 ATGTCACTAG
99849442 TGACT-CAAGTGTGGTACTATGTGAAGGCCACATTGTGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACATTGTGAAGAAAGATAGCTT
* * * *
99849493 TG-GTCACAAGTGTGGTACTATGTGAAGGTCACTTTGTGAAG-AAGGTAGCTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACATTGTGAAGAAAGATAGCTT
* *
99849544 TGACTACAAGGGTGGTACTATGTGCAGGCCA
1 TGACTACAAGTGTGGTACTATGTGAAGGCCA
99849575 TCGGGTATCT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
50 1 0.01
51 36 0.51
52 34 0.48
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (52 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACATTGTGAAGAAAGATAGCTT
Found at i:99849903 original size:34 final size:34
Alignment explanation
Indices: 99849860--99849928 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
99849850 ATTAGAGGTT
99849860 CAATAAGATATGCAATTAAATATTATTGAGTCTA
1 CAATAAGATATGCAATTAAATATTATTGAGTCTA
99849894 CAATAAGATATGCAATTAAATATTATTGAGTCTA
1 CAATAAGATATGCAATTAAATATTATTGAGTCTA
99849928 C
1 C
99849929 TTTCATATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (34 bp):
CAATAAGATATGCAATTAAATATTATTGAGTCTA
Found at i:99850625 original size:14 final size:14
Alignment explanation
Indices: 99850606--99850656 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
99850596 ACTCTTTTGG
99850606 TATTTTGAAATCAA
1 TATTTTGAAATCAA
* ***
99850620 TATTTTGAATTTGG
1 TATTTTGAAATCAA
*
99850634 TATTTTGAAAGCAA
1 TATTTTGAAATCAA
99850648 TATTTTGAA
1 TATTTTGAA
99850657 TTATGGCATG
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.47
Consensus pattern (14 bp):
TATTTTGAAATCAA
Found at i:99850633 original size:28 final size:28
Alignment explanation
Indices: 99850601--99850658 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
99850591 TCAACACTCT
*
99850601 TTTGGTATTTTGAAATCAATATTTTGAA
1 TTTGGTATTTTGAAAGCAATATTTTGAA
99850629 TTTGGTATTTTGAAAGCAATATTTTGAA
1 TTTGGTATTTTGAAAGCAATATTTTGAA
99850657 TT
1 TT
99850659 ATGGCATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.16, T:0.50
Consensus pattern (28 bp):
TTTGGTATTTTGAAAGCAATATTTTGAA
Found at i:99854905 original size:37 final size:36
Alignment explanation
Indices: 99854855--99854941 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
99854845 TACGAAGTCT
*
99854855 TACCCAGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
99854891 GTACCCGGACATAATCTCCACACGTAGTCATTGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
99854928 TCACCCGGAACATA
1 T-ACCCGG-ACATA
99854942 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:99855606 original size:49 final size:49
Alignment explanation
Indices: 99855010--99855604 Score: 994
Period size: 49 Copynumber: 12.1 Consensus size: 49
99855000 TTTACCACAT
*
99855010 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * * *
99855059 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
99855108 ATATATATACACTTTCACATTCATCACGTTGGCCATTAGGCC-TATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
99855156 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT--C--AC
*
99855209 ATATGTATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
99855258 ATATGTATACACTTTCACATTCATCACGTCAGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
99855307 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
99855356 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
99855405 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
99855454 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGTCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
99855503 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* * * **
99855552 ATATATATACATTTTCACATTCATCACATCGGTAATTAGGCCTTATCAC
1 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
99855601 ATAT
1 ATAT
99855605 ATTATTATGT
Statistics
Matches: 522, Mismatches: 19, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
48 45 0.09
49 427 0.82
51 2 0.00
53 48 0.09
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.33
Consensus pattern (49 bp):
ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:99861545 original size:37 final size:37
Alignment explanation
Indices: 99861486--99861594 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
99861476 AGCTCAGACG
* * *
99861486 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
99861523 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
99861560 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
99861595 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:99861848 original size:50 final size:50
Alignment explanation
Indices: 99861744--99861889 Score: 235
Period size: 50 Copynumber: 3.0 Consensus size: 50
99861734 CATCGCCTAC
* *
99861744 ATATTTCACACT-AGCCATTCGGCTTTACC-CATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
99861793 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
99861843 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
99861890 TCACCACATT
Statistics
Matches: 92, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
49 32 0.35
50 60 0.65
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:99861899 original size:45 final size:47
Alignment explanation
Indices: 99861849--99861945 Score: 135
Period size: 47 Copynumber: 2.1 Consensus size: 47
99861839 ATATATATTT
* *
99861849 CACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCAC
1 CACATTGACCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
* * *
99861894 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGACCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
99861941 CACAT
1 CACAT
99861946 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
45 19 0.42
46 1 0.02
47 25 0.56
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATTGACCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
Found at i:99861945 original size:47 final size:45
Alignment explanation
Indices: 99861798--99861945 Score: 152
Period size: 50 Copynumber: 3.1 Consensus size: 45
99861788 TATATATATT
* * * *
99861798 TCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATATATA
1 TCACATTGACCATTCGGCCTTACCACATATGCATGT-TCACAT-T-CA
* *
99861846 TTTCACATTGACCATTCGGCTTTACCACATATGCATGTTCATATTCA
1 --TCACATTGACCATTCGGCCTTACCACATATGCATGTTCACATTCA
* * *
99861893 CCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGACCATTCGGCCTTA-C-CACATATGCATGTTCACATTCA
99861940 TCACAT
1 TCACAT
99861946 AAAATCCTAA
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
45 19 0.22
46 1 0.01
47 26 0.30
48 1 0.01
49 6 0.07
50 35 0.40
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (45 bp):
TCACATTGACCATTCGGCCTTACCACATATGCATGTTCACATTCA
Found at i:99864188 original size:40 final size:40
Alignment explanation
Indices: 99864143--99864272 Score: 158
Period size: 40 Copynumber: 3.2 Consensus size: 40
99864133 CGGAATATAA
*
99864143 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
99864183 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
99864223 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
99864263 CCGGATATAA
1 CCGGATATAA
99864273 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 72 0.94
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99864287 original size:40 final size:40
Alignment explanation
Indices: 99864159--99864309 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
99864149 ATAAGCATGT
* * *
99864159 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** *
99864199 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
99864239 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
99864279 GCATAATTGTCTTCGGG-GTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
99864310 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 14 0.15
40 77 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Done.