Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 331 of 770
Found at i:101300833 original size:54 final size:53
Alignment explanation
Indices: 101300775--101300901 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
101300765 CTCGATTTAC
* **
101300775 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
101300829 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
101300883 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
101300902 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:101300853 original size:27 final size:27
Alignment explanation
Indices: 101300775--101300873 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
101300765 CTCGATTTAC
*
101300775 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
101300802 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
101300829 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
101300856 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
101300874 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:101300886 original size:27 final size:27
Alignment explanation
Indices: 101300800--101300919 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
101300790 CCCTCAATTT
**
101300800 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
101300827 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
101300854 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
101300881 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
101300908 GTAAAATTACCA
1 GTAAAATTACCA
101300920 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:101301555 original size:41 final size:41
Alignment explanation
Indices: 101301507--101301590 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
101301497 ATAAAAATTA
101301507 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
101301548 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
101301589 CT
1 CT
101301591 AAAGAGCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (41 bp):
CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
Found at i:101301611 original size:28 final size:28
Alignment explanation
Indices: 101301578--101301662 Score: 134
Period size: 28 Copynumber: 3.0 Consensus size: 28
101301568 GCGTAGATCA
*
101301578 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCATAAAGAGCAAAATTAC
*
101301606 TGAAATTACCCATAAAGAGCAAAATTAC
1 CGAAATTACCCATAAAGAGCAAAATTAC
* *
101301634 CGAAATTACCCTTAAATAGCAAAATTAC
1 CGAAATTACCCATAAAGAGCAAAATTAC
101301662 C
1 C
101301663 AATATACCCC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCATAAAGAGCAAAATTAC
Found at i:101304806 original size:27 final size:27
Alignment explanation
Indices: 101304730--101304819 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
101304720 TTTAGTTTAC
* *
101304730 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
101304757 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
101304784 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
101304811 TAAAATTAC
1 TAAAATTAC
101304820 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:101304829 original size:54 final size:54
Alignment explanation
Indices: 101304730--101304836 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
101304720 TTTAGTTTAC
* * *
101304730 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
101304784 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
101304837 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:101304844 original size:27 final size:27
Alignment explanation
Indices: 101304825--101305143 Score: 332
Period size: 27 Copynumber: 11.8 Consensus size: 27
101304815 ATTACCAAAG
*
101304825 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
101304852 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
101304879 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
101304906 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
101304933 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* **
101304960 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
101304987 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** *
101305014 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
101305041 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
101305068 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * ** **
101305095 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
101305122 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
101305144 AGAAATACCC
Statistics
Matches: 252, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:101304862 original size:81 final size:81
Alignment explanation
Indices: 101304771--101305061 Score: 206
Period size: 81 Copynumber: 3.6 Consensus size: 81
101304761 AATACTGAAA
* * * **
101304771 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
101304836 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
101304852 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
101304917 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*** * * ****** *
101304933 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
* * *
101304998 TATAAAATTACCGTTT
66 TACAGAATTACTGTTT
* * * * *** *
101305014 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTA
101305062 TCGTTTTACC
Statistics
Matches: 178, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 177 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
TACAGAATTACTGTTT
Found at i:101305062 original size:81 final size:81
Alignment explanation
Indices: 101304825--101305142 Score: 429
Period size: 81 Copynumber: 3.9 Consensus size: 81
101304815 ATTACCAAAG
* * * *
101304825 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
101304890 TACAAAATTACCGTTT
66 TACAAAATTATCGTTT
* * *
101304906 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
101304971 TACAGAATTATTGTTT
66 TACAAAATTATCGTTT
* * * *
101304987 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
101305052 TACAAAATTATCGTTT
66 TACAAAATTATCGTTT
* * ** * * * **
101305068 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
101305133 TACAAAATTA
66 TACAAAATTA
101305143 CAGAAATACC
Statistics
Matches: 212, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 212 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTATCGTTT
Found at i:101305152 original size:27 final size:27
Alignment explanation
Indices: 101305122--101305207 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
101305112 ATTACTATTT
*
101305122 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
101305149 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
101305176 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
101305203 TACCC
1 TACCC
101305208 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:101305170 original size:54 final size:54
Alignment explanation
Indices: 101304825--101305143 Score: 449
Period size: 54 Copynumber: 5.9 Consensus size: 54
101304815 ATTACCAAAG
* * * * * *
101304825 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
101304879 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
101304933 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
101304987 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
101305041 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
101305095 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
101305144 AGAAATACCC
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:101305194 original size:54 final size:53
Alignment explanation
Indices: 101305136--101305262 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
101305126 CTCGATTTAC
* **
101305136 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
101305190 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
101305244 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
101305263 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:101305214 original size:27 final size:27
Alignment explanation
Indices: 101305136--101305234 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
101305126 CTCGATTTAC
*
101305136 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
101305163 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
101305190 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
101305217 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
101305235 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:101305247 original size:27 final size:27
Alignment explanation
Indices: 101305161--101305280 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
101305151 CCCTCAATTT
**
101305161 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
101305188 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
101305215 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
101305242 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
101305269 GTAAAATTACCA
1 GTAAAATTACCA
101305281 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:101305918 original size:41 final size:41
Alignment explanation
Indices: 101305870--101305953 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
101305860 ATAAAAATTA
101305870 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
101305911 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
1 CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
101305952 CT
1 CT
101305954 AAAGAGCAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (41 bp):
CTGAATTAGCTTGTGTAGTAGCGTAGATCACGAAATTACCC
Found at i:101306036 original size:28 final size:28
Alignment explanation
Indices: 101305942--101306024 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
101305932 CGTAGATCAC
101305942 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
101305970 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
* *
101305998 GAAATTACCCTTAAATAGCAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
101306025 CAATATACCC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:101310745 original size:27 final size:27
Alignment explanation
Indices: 101310709--101310766 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
101310699 TGGATAAGTT
101310709 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
101310736 GTAGAGTTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
101310763 GTAG
1 GTAG
101310767 GACTACCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:101311583 original size:27 final size:26
Alignment explanation
Indices: 101311531--101311590 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
101311521 ATATATATAT
*
101311531 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
101311557 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
101311584 ATATCTG
1 ATATCTG
101311591 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:101313575 original size:20 final size:20
Alignment explanation
Indices: 101313552--101313605 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
101313542 AGCTCCGTCC
101313552 AGCTCAACTGAGCTCATTTG
1 AGCTCAACTGAGCTCATTTG
*** * *
101313572 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTGAGCTCATTTG
*
101313592 AGCTCAACCGAGCT
1 AGCTCAACTGAGCT
101313606 TACTTTCAGC
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (20 bp):
AGCTCAACTGAGCTCATTTG
Found at i:101314375 original size:38 final size:38
Alignment explanation
Indices: 101314333--101314408 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
101314323 GTAAGGTGTC
101314333 CAGTTGGAAATTAGGGACTAAATTGAATAAATTGCAAA
1 CAGTTGGAAATTAGGGACTAAATTGAATAAATTGCAAA
101314371 CAGTTGGAAATTAGGGACTAAATTGAATAAATTGCAAA
1 CAGTTGGAAATTAGGGACTAAATTGAATAAATTGCAAA
101314409 ACTTGGATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.21, T:0.26
Consensus pattern (38 bp):
CAGTTGGAAATTAGGGACTAAATTGAATAAATTGCAAA
Found at i:101319696 original size:30 final size:29
Alignment explanation
Indices: 101319602--101319703 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
101319592 TATAGTGAAT
* * *
101319602 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
101319631 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
101319659 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
101319689 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
101319704 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:101327555 original size:30 final size:29
Alignment explanation
Indices: 101327461--101327562 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
101327451 TATAGTGAAT
* * *
101327461 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
101327490 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
101327518 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
101327548 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
101327563 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:101333202 original size:53 final size:54
Alignment explanation
Indices: 101333076--101333208 Score: 250
Period size: 54 Copynumber: 2.5 Consensus size: 54
101333066 CATCTTATGG
101333076 CGGGATTACCAGTCCAGGCTAAATCCCCCCAAATATAAACTCATAGAGTGATGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCCCAAATATAAACTCATAGAGTGATGT
*
101333130 CGGGATTACCAGTCCAGGCTAAATCCCCCCAAATATAAACTTATAGAGTGATGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCCCAAATATAAACTCATAGAGTGATGT
101333184 CGGGATTA-CAGTCCAGGCTAAATCC
1 CGGGATTACCAGTCCAGGCTAAATCC
101333209 TTGTGACAAC
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
53 17 0.22
54 61 0.78
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.23
Consensus pattern (54 bp):
CGGGATTACCAGTCCAGGCTAAATCCCCCCAAATATAAACTCATAGAGTGATGT
Found at i:101340567 original size:39 final size:40
Alignment explanation
Indices: 101340467--101340648 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
101340457 TCGAATGATG
* * *
101340467 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
101340507 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
101340547 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * * *
101340586 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
**
101340626 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
101340649 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 53 0.45
40 57 0.49
41 7 0.06
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:101340607 original size:79 final size:81
Alignment explanation
Indices: 101340467--101340650 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
101340457 TCGAATGATG
* * *
101340467 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
101340531 CGTGCGAGTTAATAAA
66 CGTGCGAGTCAATAAA
* **
101340547 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
101340609 TCGTGCGAGTCACTATA
65 TCGTGCGAGTCAATAAA
**
101340626 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
101340651 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 9 0.10
79 63 0.70
80 18 0.20
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:101340656 original size:39 final size:40
Alignment explanation
Indices: 101340468--101340658 Score: 149
Period size: 39 Copynumber: 4.8 Consensus size: 40
101340458 CGAATGATGT
* * * * *
101340468 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
101340508 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
101340548 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
101340587 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
101340626 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
101340659 GTTATATCCG
Statistics
Matches: 125, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
39 60 0.48
40 58 0.46
41 7 0.06
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:101343539 original size:27 final size:28
Alignment explanation
Indices: 101343479--101343548 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
101343469 AAATTTGTAC
101343479 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
101343507 AACACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
101343534 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101343549 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:101343559 original size:27 final size:27
Alignment explanation
Indices: 101343481--101343560 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 27
101343471 ATTTGTACAG
* *
101343481 CACTAAGTGTGCGAGTTTGA-TCATATAA
1 CACTAAGTGTGCGAG-CTCACT-ATATAA
* * * *
101343509 CACTAAGTGTGCGAGTTGATTATATAG
1 CACTAAGTGTGCGAGCTCACTATATAA
101343536 CACTAAGTGTGCG-GACTCACTATAT
1 CACTAAGTGTGCGAG-CTCACTATAT
101343561 GCTTTTGAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.63
28 16 0.35
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTCACTATATAA
Found at i:101352793 original size:40 final size:40
Alignment explanation
Indices: 101352748--101352915 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
101352738 CGGAATATAA
101352748 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
101352788 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
101352828 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
101352868 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
101352908 CCGGATAT
1 CCGGATAT
101352916 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:101358862 original size:28 final size:28
Alignment explanation
Indices: 101358793--101358893 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
101358783 GACAAGATTG
* * * *
101358793 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
101358823 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
101358851 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
101358880 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101358894 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:101363876 original size:40 final size:40
Alignment explanation
Indices: 101363831--101363998 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
101363821 CGGAATATAA
101363831 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
101363871 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
101363911 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
101363951 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
101363991 CCGGATAT
1 CCGGATAT
101363999 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:101373238 original size:29 final size:29
Alignment explanation
Indices: 101373185--101373241 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
101373175 CTGAGCCTTG
*
101373185 GGGGAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAGTGTAAATATGCAAAAGTTTA
* * *
101373214 GGGGAAAAGTGTAATTTTGCCAAAGTTT
1 GGGGAAAAGTGTAAATATGCAAAAGTTT
101373242 GAGTCAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.28, T:0.30
Consensus pattern (29 bp):
GGGGAAAAGTGTAAATATGCAAAAGTTTA
Found at i:101373656 original size:55 final size:54
Alignment explanation
Indices: 101373578--101373832 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
101373568 ATTAGGGTTT
*
101373578 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
101373633 AAGGATATCAAGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * * *
101373688 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGT
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
101373741 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAG-TTCTAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
101373790 AAGGATATCATGTAAGACCATGACAAGCCAAGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
101373833 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
49 38 0.22
52 8 0.05
53 42 0.25
54 9 0.05
55 69 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:101373784 original size:108 final size:109
Alignment explanation
Indices: 101373585--101373834 Score: 302
Period size: 108 Copynumber: 2.4 Consensus size: 109
101373575 TTTAAGGATA
* *
101373585 CCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCAAGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCAAGTAAGA
* *
101373650 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTT-CTAAAAGGCAAAGGTC
* * *
101373695 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGTAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCAAGTAAG
* * *
101373757 ACCATGTCGAGACATGGCAATGGTAAGTTCTAAAAGG-ATA--T-
65 ACCATGTCAAGACATGGCAATGATAAGTTCTAAAAGGCAAAGGTC
* * *
101373798 -CATGTAAGACCATGACAAGCCAAGGCAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
101373835 ACCCGTGTAT
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
102 28 0.23
103 2 0.02
104 1 0.01
106 2 0.02
107 10 0.08
108 46 0.38
109 7 0.06
110 26 0.21
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCAAGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTCTAAAAGGCAAAGGTC
Found at i:101374049 original size:16 final size:16
Alignment explanation
Indices: 101374028--101374058 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101374018 ATAAATTTGA
101374028 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
101374044 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
101374059 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:101377366 original size:40 final size:40
Alignment explanation
Indices: 101377311--101377572 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
101377301 TATTCGGATG
* * *
101377311 ATAACTGGGCTAAGTCCCAAAGGCATTTGTGGGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101377351 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101377391 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
101377431 ATATCCTGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
101377471 ATATCCGGGCTATGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
101377511 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
101377551 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
101377573 TACTTGGTTG
Statistics
Matches: 202, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 17 0.08
40 185 0.92
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:101385541 original size:40 final size:40
Alignment explanation
Indices: 101385486--101385707 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
101385476 TATTCGGATG
101385486 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101385526 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101385566 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101385606 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
101385646 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
101385686 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
101385708 TACTTGGTTT
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 17 0.10
40 154 0.90
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:101388195 original size:25 final size:24
Alignment explanation
Indices: 101388159--101388210 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
101388149 AAGTTCAAGC
101388159 GAGCCATATCAGGAAGCTCACAAA
1 GAGCCATATCAGGAAGCTCACAAA
* *
101388183 GAGCCTATATCAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCACAAA
101388208 GAG
1 GAG
101388211 TTGCATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCACAAA
Found at i:101395132 original size:48 final size:47
Alignment explanation
Indices: 101395030--101395259 Score: 138
Period size: 48 Copynumber: 4.8 Consensus size: 47
101395020 TGTGAGTATT
* * * * *
101395030 GAGATCCCGTTTAAGATGATATCTGGGGTATGGCATCAAAATCGAGAT
1 GAGATCCC-TTTAAGATCATATCTGGGATATGGCATCGACATCGAGAA
* *
101395078 GAGATCCCTTGTAAGATCATATCTGGGATATGGCATCGACATTGATAA
1 GAGATCCCTT-TAAGATCATATCTGGGATATGGCATCGACATCGAGAA
* * * ** * *
101395126 GTGATCCCATATAAGACCACGTCTGGGACATGGCATCGACATC-AGTAT
1 GAGATCCC-TTTAAGATCATATCTGGGATATGGCATCGACATCGAG-AA
* * * ** * * * *
101395174 GAGATCCCATGTAAAACCATATCTGAAATATGGCATTGGCATCGATAT
1 GAGATCCC-TTTAAGATCATATCTGGGATATGGCATCGACATCGAGAA
* * * * * *
101395222 GAGGTCCCGTATAAGACCATGTCTAGGACATGGCATCG
1 GAGATCCC-TTTAAGATCATATCTGGGATATGGCATCG
101395260 GCACCGTTAT
Statistics
Matches: 141, Mismatches: 37, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
47 3 0.02
48 136 0.96
49 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (47 bp):
GAGATCCCTTTAAGATCATATCTGGGATATGGCATCGACATCGAGAA
Found at i:101395271 original size:48 final size:46
Alignment explanation
Indices: 101395128--101395274 Score: 132
Period size: 48 Copynumber: 3.1 Consensus size: 46
101395118 ATTGATAAGT
* * *
101395128 GATCCCATATAAGACCACGTCTGGGACATGGCATCGACATCAGTATGA
1 GATCCCATATAAGACCATGTCT-GGACATGGCATCGGCA-CCGTATGA
* * * * * * *
101395176 GATCCCATGTAAAACCATATCTGAAATATGGCATTGGCATCGATATGA
1 GATCCCATATAAGACCATGTCTG-GACATGGCATCGGCACCG-TATGA
* *
101395224 GGTCCCGTATAAGACCATGTCTAGGACATGGCATCGGCACCGTTATGA
1 GATCCCATATAAGACCATGTCT-GGACATGGCATCGGCACCG-TATGA
101395272 GAT
1 GAT
101395275 TTCGTGAAAG
Statistics
Matches: 75, Mismatches: 21, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
47 2 0.03
48 72 0.96
49 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (46 bp):
GATCCCATATAAGACCATGTCTGGACATGGCATCGGCACCGTATGA
Found at i:101395274 original size:96 final size:96
Alignment explanation
Indices: 101395059--101395259 Score: 242
Period size: 96 Copynumber: 2.1 Consensus size: 96
101395049 TATCTGGGGT
* * * * * ** *
101395059 ATGGCATCAAAATCGAG-ATGAGATCCCTTGTAAGATCATATCTGGGATATGGCATCGACATTGA
1 ATGGCATCGACATC-AGTATGAGATCCCATGTAAAACCATATCTGAAATATGGCATCGACATCGA
* *
101395123 TAAGTGATCCCATATAAGACCACGTCTGGGAC
65 TAAGAGATCCCATATAAGACCACGTCTAGGAC
* *
101395155 ATGGCATCGACATCAGTATGAGATCCCATGTAAAACCATATCTGAAATATGGCATTGGCATCGAT
1 ATGGCATCGACATCAGTATGAGATCCCATGTAAAACCATATCTGAAATATGGCATCGACATCGAT
* * * *
101395220 ATGAGGTCCCGTATAAGACCATGTCTAGGAC
66 AAGAGATCCCATATAAGACCACGTCTAGGAC
101395251 ATGGCATCG
1 ATGGCATCG
101395260 GCACCGTTAT
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 2 0.02
96 86 0.98
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (96 bp):
ATGGCATCGACATCAGTATGAGATCCCATGTAAAACCATATCTGAAATATGGCATCGACATCGAT
AAGAGATCCCATATAAGACCACGTCTAGGAC
Found at i:101402189 original size:46 final size:46
Alignment explanation
Indices: 101402120--101402381 Score: 207
Period size: 46 Copynumber: 5.7 Consensus size: 46
101402110 TGGGCATCCA
* * *
101402120 AACTCATTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* * * * * *
101402166 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GCTG-TAACTAGGCATCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CCG
*
101402213 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* * *
101402259 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CCG
* * *
101402306 AACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* * *
101402352 AGCTCATTGAGTTGTGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
101402382 GGGGCGGATT
Statistics
Matches: 169, Mismatches: 29, Indels: 36
0.72 0.12 0.15
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
45 8 0.05
46 76 0.45
47 52 0.31
48 8 0.05
50 8 0.05
51 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
Found at i:101402225 original size:47 final size:47
Alignment explanation
Indices: 101402166--101402330 Score: 187
Period size: 47 Copynumber: 3.5 Consensus size: 47
101402156 CGAATGCCCA
*
101402166 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGCTGTAACTAGGCATCTG
1 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGCTGTAACTAGGCATCCG
*** *
101402213 AACTCGTTGAGTTGAGTCTGAGTTC---A-CT-TATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGCTGTAACTA-G-GCAT--CCG
* *
101402259 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGCTGTAACTAGGCATCCG
*
101402306 AACTTGTTGAGTTGAGTCTGAGTTC
1 AACTCGTTGAGTTGAGTCTGAGTTC
101402331 ACTTATGGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 4 0.04
46 26 0.27
47 51 0.53
49 4 0.04
50 2 0.02
51 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCTGAGTTCGTGAGCTGTAACTAGGCATCCG
Found at i:101402271 original size:93 final size:93
Alignment explanation
Indices: 101402112--101402376 Score: 413
Period size: 93 Copynumber: 2.8 Consensus size: 93
101402102 AGGATATTTG
* * * * *
101402112 GGCATCCAAACTCATTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
* *
101402177 TTGAGTCTGAGTTCGTGAGCTGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
101402205 GGCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
101402270 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
101402298 GGCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
101402363 TTGTGTCCGAGTTC
66 TTGAGTCCGAGTTC
101402377 ACTTAGGGGC
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:101411234 original size:46 final size:46
Alignment explanation
Indices: 101411184--101411359 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
101411174 TGGTTGAGCA
101411184 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
101411230 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
101411275 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
101411323 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101411360 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101411340 original size:93 final size:93
Alignment explanation
Indices: 101411181--101411352 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
101411171 GGATGGTTGA
* *
101411181 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101411246 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
101411274 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101411339 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
101411353 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101418509 original size:17 final size:19
Alignment explanation
Indices: 101418467--101418510 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
101418457 ATGAAATTTT
* *
101418467 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
101418486 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
101418504 AA-TATTA
1 AATTATTA
101418511 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:101421418 original size:17 final size:19
Alignment explanation
Indices: 101421376--101421419 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
101421366 ATGAAATTTT
* *
101421376 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
101421395 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
101421413 AA-TATTA
1 AATTATTA
101421420 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:101426627 original size:46 final size:46
Alignment explanation
Indices: 101426577--101426752 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
101426567 TGGTTGAGCA
101426577 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
101426623 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
101426668 CATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** *
101426716 CCCGAGTTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101426753 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101426733 original size:93 final size:93
Alignment explanation
Indices: 101426574--101426745 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
101426564 GGATGGTTGA
* *
101426574 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101426639 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* **
101426667 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGCCCGAGTTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101426732 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
101426746 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101429589 original size:24 final size:24
Alignment explanation
Indices: 101429557--101429602 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
101429547 GTACCAGGAA
101429557 CTACTCCGATTTCGATAGCTCCGT
1 CTACTCCGATTTCGATAGCTCCGT
101429581 CTACTCCGATTTCGATAGCTCC
1 CTACTCCGATTTCGATAGCTCC
101429603 ATGTAGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.35, G:0.15, T:0.33
Consensus pattern (24 bp):
CTACTCCGATTTCGATAGCTCCGT
Found at i:101433671 original size:93 final size:93
Alignment explanation
Indices: 101433559--101433730 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
101433549 GCCCATAAGT
* *
101433559 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101433624 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
101433652 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101433717 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
101433731 CAATATCCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:101433726 original size:46 final size:46
Alignment explanation
Indices: 101433551--101433726 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
101433541 ATGTAACCGC
* * *
101433551 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
101433597 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
101433647 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
101433690 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101433727 TGCCCAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:101436147 original size:30 final size:30
Alignment explanation
Indices: 101436103--101436191 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
101436093 CAAAGATAAC
*
101436103 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
101436132 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
101436162 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
101436192 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:101436151 original size:15 final size:14
Alignment explanation
Indices: 101436103--101436185 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
101436093 CAAAGATAAC
*
101436103 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
101436117 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
101436132 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
101436147 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
101436162 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
101436177 AAGAAACCC
1 AAGAAACCC
101436186 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:101436191 original size:15 final size:15
Alignment explanation
Indices: 101436114--101436191 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
101436104 AGAAAACCGA
101436114 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
101436129 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
101436143 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
101436158 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
101436174 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
101436189 ATA
1 ATA
101436192 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:101439394 original size:27 final size:27
Alignment explanation
Indices: 101439364--101439648 Score: 200
Period size: 27 Copynumber: 10.6 Consensus size: 27
101439354 GGTAAATCTA
*
101439364 CAAACCAAGGGTATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
101439391 CAAACCAATGGTATTTCTATAATTTTTG
1 CAAATCAAGGGTATTTCGATAA-TTTTG
* *
101439419 -AAAGTCAAGAGTATTTCTATAATTTTG
1 CAAA-TCAAGGGTATTTCGATAATTTTG
* * * *
101439446 TAAATCAGGGGTATTTTGATAATTTTC
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
101439473 CAAATCAATGGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTCGATAATTTTG
* * * *
101439500 CAAATTAGGGGTA-TTCTGGTAATTTTA
1 CAAATCAAGGGTATTTC-GATAATTTTG
* * **
101439527 TAAATCGAGGGTATTTCGATAATTTCA
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
101439554 CAAATCAA-GGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGATAATTTTG
* * * * *
101439580 CAAACCAGGGGTATTTTGGTAAATTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
101439607 CTAATCGAGGGTATGTT-GGTAATTTTG
1 CAAATCAAGGGTAT-TTCGATAATTTTG
* *
101439634 TAAACCAAGGGTATT
1 CAAATCAAGGGTATT
101439649 CAGTAAATTT
Statistics
Matches: 208, Mismatches: 43, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
26 25 0.12
27 155 0.75
28 28 0.13
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGATAATTTTG
Found at i:101439510 original size:54 final size:54
Alignment explanation
Indices: 101439345--101439648 Score: 229
Period size: 54 Copynumber: 5.6 Consensus size: 54
101439335 CACCCTACAA
* * * * * * *
101439345 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTCCAAATCAG
* * ** * * **
101439399 TGGTATTTCT-ATAATTTTTGAAAGTCAAGAGTATTTCTATAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAA-TCAAGGGTATTTCGATAATTTTCCAAATCAG
* * * * *
101439454 GGGTATTTTGATAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTCCAAATCAG
* * *
101439508 GGGTATTCTGGTAATTTTATAAATCGAGGGTATTTCGATAA-TTTCACAAATCA-
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTC-CAAATCAG
* * * * * * * *
101439561 AGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAAATTTGCTAATC-G
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTCCAAATCAG
* ** *
101439614 AGGGTATGTTGGTAATTTTGTAAACCAAGGGTATT
1 -GGGTATTTTGGTAATTTTACAAATCAAGGGTATT
101439649 CAGTAAATTT
Statistics
Matches: 197, Mismatches: 46, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
53 42 0.21
54 111 0.56
55 44 0.22
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGATAATTTTCCAAATCAG
Found at i:101439548 original size:81 final size:81
Alignment explanation
Indices: 101439371--101439620 Score: 258
Period size: 80 Copynumber: 3.1 Consensus size: 81
101439361 CTACAAACCA
* * ** ** * *
101439371 AGGGTATTTCGATAATTTTGCAAACCAATGGTATTTCTATAATTTTTGAAAGTCAAGAGTATTTC
1 AGGGTATTTCGATAATTTTCCAAATCAATGGTATTTCGGTAATTTTACAAA-TCAGGGGTA-TTC
* *
101439436 T-ATAATTTTGTAAATC-
64 TGGTAATTTTATAAATCG
* * *
101439452 AGGGGTATTTTGATAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAATTAGGGGTATTCT
1 A-GGGTATTTCGATAATTTTCCAAATCAATGGTATTTCGGTAATTTTACAAATCAGGGGTATTCT
101439517 GGTAATTTTATAAATCG
65 GGTAATTTTATAAATCG
* * *
101439534 AGGGTATTTCGATAA-TTTCACAAATCAA-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AGGGTATTTCGATAATTTTC-CAAATCAATGGTATTTCGGTAATTTTACAAATCAGGGGTATTCT
**
101439597 GGTAAATTTGCT-AATCG
65 GGT-AATTTTATAAATCG
101439614 AGGGTAT
1 AGGGTAT
101439621 GTTGGTAATT
Statistics
Matches: 144, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
80 53 0.37
81 47 0.33
82 44 0.31
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTCCAAATCAATGGTATTTCGGTAATTTTACAAATCAGGGGTATTCTG
GTAATTTTATAAATCG
Found at i:101439643 original size:80 final size:80
Alignment explanation
Indices: 101439371--101439648 Score: 215
Period size: 80 Copynumber: 3.4 Consensus size: 80
101439361 CTACAAACCA
* * * ** ** * * *
101439371 AGGGTATTTCGATAATTTTGCAAACCAATGGTATTTCTATAATTTTTGAAAGTCAAGAGTATTTC
1 AGGGTATTT-GATAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAA-CCAGGGGTA-TTC
*
101439436 T-ATAATTTTG-TAAATC-
63 TGGTAA-TTTGATAAATCG
* * * **
101439452 AGGGGTATTTTGATAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAATTAGGGGTATTCT
1 A-GGGTA-TTTGATAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTCT
*
101439517 GGTAATTTTATAAATCG
64 GGTAATTTGATAAATCG
* * *
101439534 AGGGTATTTCGATAATTTCACAAATCAA-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 AGGGTATTT-GATAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTCTG
*
101439598 GTAAATTTGCT-AATCG
65 GT-AATTTGATAAATCG
* ** *
101439614 AGGGTATGTTGGTAATTTTGTAAACCAAGGGTATT
1 AGGGTAT-TTGATAATTTTACAAATCAAGGGTATT
101439649 CAGTAAATTT
Statistics
Matches: 163, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
80 68 0.42
81 51 0.31
82 41 0.25
83 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
AGGGTATTTGATAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTCTGG
TAATTTGATAAATCG
Found at i:101439654 original size:26 final size:27
Alignment explanation
Indices: 101439365--101439683 Score: 120
Period size: 27 Copynumber: 11.9 Consensus size: 27
101439355 GTAAATCTAC
*
101439365 AAACCAAGGGTATTTC-GATAATTTTGC
1 AAACCAAGGGTATTTCAG-TAATTTTGT
*
101439392 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
101439418 GAAAGTCAAGAGTATTTCTA-TAATTTTGT
1 -AAA-CCAAGGGTATTTC-AGTAATTTTGT
* * * **
101439447 AAATCAGGGGTATTT-TGATAATTTTCC
1 AAACCAAGGGTATTTCAG-TAATTTTGT
* * * **
101439474 AAATCAATGGTATTTCGGTAATTTTCC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** * * *
101439501 AAATTAGGGGTA-TTCTGGTAATTTTAT
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * ***
101439528 AAATCGAGGGTATTTC-GATAATTTCAC
1 AAACCAAGGGTATTTCAG-TAATTTTGT
* ** **
101439555 AAATCAA-GGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
* ** *
101439581 AAACCAGGGGTATTTTGGTAAATTTGCT
1 AAACCAAGGGTATTTCAGTAATTTTG-T
* * *
101439609 -AATCGAGGGTATGTT-GGTAATTTTGT
1 AAACCAAGGGTAT-TTCAGTAATTTTGT
*
101439635 AAACCAAGGGTA-TTCAGTAAATTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
101439661 AAACTAAGGGTATTTTAGTAATT
1 AAACCAAGGGTATTTCAGTAATT
101439684 CTACCCTACA
Statistics
Matches: 232, Mismatches: 42, Indels: 36
0.75 0.14 0.12
Matches are distributed among these distances:
25 2 0.01
26 45 0.19
27 156 0.67
28 28 0.12
29 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:101439702 original size:27 final size:27
Alignment explanation
Indices: 101439672--101439736 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
101439662 AACTAAGGGT
*
101439672 ATTTTAGTAATTCTACCCTACAGGGAC
1 ATTTCAGTAATTCTACCCTACAGGGAC
**
101439699 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGAC
101439726 ATTTCAGTAAT
1 ATTTCAGTAAT
101439737 ACTAGCCAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGAC
Found at i:101442937 original size:41 final size:41
Alignment explanation
Indices: 101442884--101443006 Score: 228
Period size: 41 Copynumber: 3.0 Consensus size: 41
101442874 TAAAAGCCAC
* *
101442884 CGGTAGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
101442925 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
101442966 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
101443007 TTCTTCCTTC
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 80 1.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:101443296 original size:27 final size:26
Alignment explanation
Indices: 101443266--101443558 Score: 153
Period size: 27 Copynumber: 10.9 Consensus size: 26
101443256 GGTAAATCTA
101443266 CAAACCAAGGGTATTTCGATAATTTTG
1 CAAACCAAGGGTATTTCG-TAATTTTG
* *
101443293 CAAACCAATGGTATTTTTGTAATTTTTG
1 CAAACCAAGGGTA-TTTCGTAA-TTTTG
*
101443321 -AAAGTCAAGGGTATTTCTGTAATTTTG
1 CAAA-CCAAGGGTATTTC-GTAATTTTG
* ** * *
101443348 TAAATTAGGGGTATTTTTGTAATTTT-
1 CAAACCAAGGGTA-TTTCGTAATTTTG
* *
101443374 CTAAATCAAGGGTATTTCGGTAATTTTT
1 C-AAACCAAGGGTATTTC-GTAATTTTG
* * **
101443402 CAAATCGAGGGTATTTCTGTAATTTCA
1 CAAACCAAGGGTATTTC-GTAATTTTG
** * * *
101443429 CAAA-TTAGGTTATTTTAGTAATTTTA
1 CAAACCAAGGGTA-TTTCGTAATTTTG
* *
101443455 CAAACCAGGGGTATTTTGGTAATTTTG
1 CAAACCAAGGGTA-TTTCGTAATTTTG
* * * *
101443482 CTAATCGAGGGTATTTTGGTAATTTTG
1 CAAACCAAGGGTA-TTTCGTAATTTTG
* * *
101443509 AAAACCAAAGGTA-TTCAATAATTTTG
1 CAAACCAAGGGTATTTC-GTAATTTTG
* * *
101443535 TAAACTAATGGTATTTCAGTAATT
1 CAAACCAAGGGTATTTC-GTAATT
101443559 CTACGCTACA
Statistics
Matches: 211, Mismatches: 42, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
25 2 0.01
26 38 0.18
27 144 0.68
28 27 0.13
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (26 bp):
CAAACCAAGGGTATTTCGTAATTTTG
Found at i:101443333 original size:28 final size:27
Alignment explanation
Indices: 101443271--101443426 Score: 158
Period size: 27 Copynumber: 5.7 Consensus size: 27
101443261 ATCTACAAAC
*
101443271 CAAGGGTATTTC-GATAA-TTTTGCAAAC
1 CAAGGGTATTTCTG-TAATTTTTG-AAAT
* *
101443298 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTCTGTAATTTTTGAAA-T
101443326 CAAGGGTATTTCTGTAA-TTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTTG-AAAT
* * *
101443353 TAGGGGTATTTTTGTAATTTTCT-AAAT
1 CAAGGGTATTTCTGTAATTTT-TGAAAT
* *
101443380 CAAGGGTATTTCGGTAATTTTTCAAAT
1 CAAGGGTATTTCTGTAATTTTTGAAAT
*
101443407 CGAGGGTATTTCTGTAATTT
1 CAAGGGTATTTCTGTAATTT
101443427 CACAAATTAG
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 79 0.73
28 27 0.25
29 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.44
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTTGAAAT
Found at i:101443476 original size:80 final size:80
Alignment explanation
Indices: 101443285--101443506 Score: 259
Period size: 80 Copynumber: 2.7 Consensus size: 80
101443275 GGTATTTCGA
* * * * ***
101443285 TAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAGGGTATTTCTGTAATTTTGTA
1 TAATTTT-CAAACCAAGGGTATTTTGGTAATTTTTCAAA-TCGAGGGTATTTCTGTAATTTCACA
*
101443350 AATTAGGGGTATTTTTG
64 AATTAGGGGTATTTTAG
* *
101443367 TAATTTTCTAAATCAAGGGTATTTCGGTAATTTTTCAAATCGAGGGTATTTCTGTAATTTCACAA
1 TAATTTTC-AAACCAAGGGTATTTTGGTAATTTTTCAAATCGAGGGTATTTCTGTAATTTCACAA
*
101443432 ATTA-GGTTATTTTAG
65 ATTAGGGGTATTTTAG
* * *
101443447 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTT-TGGTAATTT
1 TAATTTT-CAAACCAAGGGTATTTTGGTAATTTTTCAAATCGAGGGTATTTCT-GTAATTT
101443507 TGAAAACCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 60 0.50
81 28 0.23
82 32 0.26
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (80 bp):
TAATTTTCAAACCAAGGGTATTTTGGTAATTTTTCAAATCGAGGGTATTTCTGTAATTTCACAAA
TTAGGGGTATTTTAG
Found at i:101443522 original size:54 final size:54
Alignment explanation
Indices: 101443266--101443523 Score: 211
Period size: 54 Copynumber: 4.8 Consensus size: 54
101443256 GGTAAATCTA
* * * * *
101443266 CAAACCAAGGGTATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTG
1 CAAATCAAGGGTATTTTGGTAATTTTGAAAACCAAGGGTATTTTTGTAA-TTTTG
* ** *
101443321 -AAAGTCAAGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTTGTAATTTT-
1 CAAA-TCAAGGGTATTT-TGGTAATTTTGAAAACCAAGGGTATTTTTGTAATTTTG
* ** * * * **
101443374 CTAAATCAAGGGTATTTCGGTAATTTTTCAAATCGAGGGTATTTCTGTAATTTCA
1 C-AAATCAAGGGTATTTTGGTAATTTTGAAAACCAAGGGTATTTTTGTAATTTTG
* * * * *
101443429 CAAAT-TAGGTTATTTTAGTAATTTT-ACAAACCAGGGGTATTTTGGTAATTTTG
1 CAAATCAAGGGTATTTTGGTAATTTTGA-AAACCAAGGGTATTTTTGTAATTTTG
* * *
101443482 CTAATCGAGGGTATTTTGGTAATTTTGAAAACCAAAGGTATT
1 CAAATCAAGGGTATTTTGGTAATTTTGAAAACCAAGGGTATT
101443524 CAATAATTTT
Statistics
Matches: 160, Mismatches: 34, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
53 39 0.24
54 80 0.50
55 41 0.26
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
CAAATCAAGGGTATTTTGGTAATTTTGAAAACCAAGGGTATTTTTGTAATTTTG
Found at i:101443522 original size:107 final size:109
Alignment explanation
Indices: 101443271--101443523 Score: 280
Period size: 107 Copynumber: 2.3 Consensus size: 109
101443261 ATCTACAAAC
* * * ***
101443271 CAAGGGTATTTCGATAATTTTGCAAACCAATGGTATTTTTGTAATTTTTGAAAGTCAAGGGTATT
1 CAAGGGTATTTCGGTAATTTTGCAAACCAAAGGTATTTCTGTAATTTCACAAAGTCAAGGGTATT
** ** *
101443336 TCTGTAATTTTGTAAATTAGGGGTATTTTTGTAATTTTCTAAAT
66 TCTGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTCTAAAT
* * * * * *
101443380 CAAGGGTATTTCGGTAATTTTTCAAATCGAGGGTATTTCTGTAATTTCACAAA-T-TAGGTTATT
1 CAAGGGTATTTCGGTAATTTTGCAAACCAAAGGTATTTCTGTAATTTCACAAAGTCAAGGGTATT
101443443 T-TAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCT-AAT
66 TCT-GTAATTTTACAAACCAGGGGTATTTTGGTAATTTT-CTAAAT
* * *
101443487 CGAGGGTATTTTGGTAATTTTGAAAACCAAAGGTATT
1 CAAGGGTATTTCGGTAATTTTGCAAACCAAAGGTATT
101443524 CAATAATTTT
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
106 1 0.01
107 71 0.60
108 3 0.03
109 44 0.37
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (109 bp):
CAAGGGTATTTCGGTAATTTTGCAAACCAAAGGTATTTCTGTAATTTCACAAAGTCAAGGGTATT
TCTGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTCTAAAT
Found at i:101443539 original size:26 final size:27
Alignment explanation
Indices: 101443501--101443558 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
101443491 GGTATTTTGG
101443501 TAATTTTGAAAACCAAAGGTA-TTCAA
1 TAATTTTGAAAACCAAAGGTATTTCAA
* * * *
101443527 TAATTTTGTAAACTAATGGTATTTCAG
1 TAATTTTGAAAACCAAAGGTATTTCAA
101443554 TAATT
1 TAATT
101443559 CTACGCTACA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.40
Consensus pattern (27 bp):
TAATTTTGAAAACCAAAGGTATTTCAA
Found at i:101448353 original size:28 final size:29
Alignment explanation
Indices: 101448306--101448360 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
101448296 ACAGGGGTTT
*
101448306 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACAGCCAAGCACACGCCCGTGTCCC
* *
101448335 TCACACAGCCTAG-ACACGCTCGTGTC
1 TCACACAGCCAAGCACACGCCCGTGTC
101448361 ATCGCCCATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.22, C:0.44, G:0.20, T:0.15
Consensus pattern (29 bp):
TCACACAGCCAAGCACACGCCCGTGTCCC
Found at i:101454996 original size:18 final size:18
Alignment explanation
Indices: 101454972--101455016 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
101454962 TTTTAATATA
101454972 ATTTTTATAATTTTACAAT
1 ATTTTTAT-ATTTTACAAT
*
101454991 -TTTTTAT-TTTTATAAT
1 ATTTTTATATTTTACAAT
101455007 ATTTTTATAT
1 ATTTTTATAT
101455017 ATAAAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 8 0.35
17 7 0.30
18 8 0.35
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTATATTTTACAAT
Found at i:101455011 original size:17 final size:16
Alignment explanation
Indices: 101454968--101455014 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
101454958 GTTTTTTTAA
*
101454968 TATAATTTTTATAATTT
1 TATAATTTTT-TATTTT
*
101454985 TACAATTTTTTATTTT
1 TATAATTTTTTATTTT
101455001 TATAATATTTTTAT
1 TATAAT-TTTTTAT
101455015 ATATAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (16 bp):
TATAATTTTTTATTTT
Found at i:101455090 original size:15 final size:16
Alignment explanation
Indices: 101455069--101455113 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
101455059 TTATTATATA
101455069 AAATTTTAAAAATTTT
1 AAATTTTAAAAATTTT
*
101455085 --ATTTTTAAAATTTT
1 AAATTTTAAAAATTTT
*
101455099 AAATTTTAATAATTT
1 AAATTTTAAAAATTT
101455114 CATATAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 13 0.54
16 11 0.46
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
AAATTTTAAAAATTTT
Found at i:101455096 original size:23 final size:24
Alignment explanation
Indices: 101455057--101455101 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
101455047 AAAAAATACC
101455057 TTTTATTATATAAAATTTTAAAAA
1 TTTTATTATATAAAATTTTAAAAA
*
101455081 TTTTATT-TTTAAAATTTTAAA
1 TTTTATTATATAAAATTTTAAA
101455102 TTTTAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTATTATATAAAATTTTAAAAA
Found at i:101458836 original size:30 final size:29
Alignment explanation
Indices: 101458783--101458839 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
101458773 TTGGGATGGG
*
101458783 AGAGGAGCAAAAGTTACGGGAGAAAAGTA
1 AGAGGAGCAAAAGTTACGAGAGAAAAGTA
**
101458812 AGAGTGAGCAAAAGTTTTGAGAGAAAAG
1 AGAG-GAGCAAAAGTTACGAGAGAAAAG
101458840 GGAAGAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.47, C:0.05, G:0.33, T:0.14
Consensus pattern (29 bp):
AGAGGAGCAAAAGTTACGAGAGAAAAGTA
Found at i:101465882 original size:21 final size:21
Alignment explanation
Indices: 101465856--101465897 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
101465846 GGTAAGACAA
*
101465856 CCAGTTAGATCTCAACTATCT
1 CCAGTTAAATCTCAACTATCT
*
101465877 CCAGTTAAATCTCAATTATCT
1 CCAGTTAAATCTCAACTATCT
101465898 TTTACACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (21 bp):
CCAGTTAAATCTCAACTATCT
Found at i:101469942 original size:40 final size:40
Alignment explanation
Indices: 101469886--101470030 Score: 247
Period size: 40 Copynumber: 3.6 Consensus size: 40
101469876 CGGATGATAA
101469886 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
*
101469926 TCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
* *
101469966 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-T
101470006 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
101470031 AGAGAGTAGC
Statistics
Matches: 100, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
Found at i:101469955 original size:22 final size:22
Alignment explanation
Indices: 101469890--101469955 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
101469880 TGATAACCGG
101469890 GCTAAGTCCCGAAGGCATTTGT
1 GCTAAGTCCCGAAGGCATTTGT
*** *
101469912 GCT-AGT---G-ACTAATTTCGG
1 GCTAAGTCCCGAAGGCATTT-GT
101469930 GCTAAGTCCCGAAGGCATTTGT
1 GCTAAGTCCCGAAGGCATTTGT
101469952 GCTA
1 GCTA
101469956 GTGACTAATT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 5 0.17
18 5 0.17
19 3 0.10
21 3 0.10
22 9 0.30
23 5 0.17
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (22 bp):
GCTAAGTCCCGAAGGCATTTGT
Found at i:101470049 original size:40 final size:40
Alignment explanation
Indices: 101469886--101470063 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
101469876 CGGATGATAA
*
101469886 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
* *
101469926 TCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
*
101469966 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-T
* *
101470006 CCGGGCTAAGTCCCGAAGGCATTTGAGAGAGT-AGCT-ATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTAAT-T
*
101470046 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
101470064 TACTTGGTTG
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 18 0.14
40 110 0.86
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
Found at i:101477963 original size:40 final size:39
Alignment explanation
Indices: 101477900--101478114 Score: 303
Period size: 40 Copynumber: 5.5 Consensus size: 39
101477890 CGGATGATAA
*
101477900 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT-ATT
*
101477939 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT-ATT
*
101477979 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAT-T
*
101478019 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATT
*
101478057 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTAT-T
*
101478097 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
101478115 TACTTGGTTG
Statistics
Matches: 167, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
37 1 0.01
38 35 0.21
39 28 0.17
40 103 0.62
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATT
Found at i:101482074 original size:11 final size:11
Alignment explanation
Indices: 101482058--101482109 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
101482048 TATACTAAAT
101482058 AAATAATAATA
1 AAATAATAATA
*
101482069 AAATAAT-ATT
1 AAATAATAATA
* *
101482079 AAATATCTCATA
1 AAATA-ATAATA
*
101482091 AAATATTAATA
1 AAATAATAATA
101482102 AAATAATA
1 AAATAATA
101482110 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:101487320 original size:40 final size:39
Alignment explanation
Indices: 101487275--101487482 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
101487265 CGGAATACAA
*
101487275 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
101487315 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
101487355 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
101487395 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
101487435 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
101487475 CCGGATAT
1 CCGGATAT
101487483 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:101487415 original size:80 final size:81
Alignment explanation
Indices: 101487275--101487480 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
101487265 CGGAATACAA
* * *
101487275 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
101487339 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
101487355 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
101487418 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
101487435 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
101487481 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:101495202 original size:20 final size:19
Alignment explanation
Indices: 101495155--101495202 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
101495145 ATATAATCTT
101495155 TATTATGTT-TTATTTTCA
1 TATTATGTTATTATTTTCA
* *
101495173 TATTAT-TTATTGTTTTTA
1 TATTATGTTATTATTTTCA
101495191 TATATATGTTAT
1 TAT-TATGTTAT
101495203 GTATATCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 3 0.12
20 4 0.16
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TATTATGTTATTATTTTCA
Found at i:101500498 original size:46 final size:47
Alignment explanation
Indices: 101500424--101500552 Score: 163
Period size: 46 Copynumber: 2.8 Consensus size: 47
101500414 GGTGGTATGT
* *
101500424 GAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCA-CAACATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAACACGA
* * * ** *
101500470 GTGCCAGTGTAAGACATGTCTGGGACATGCATCTG-TATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAACACGA
*
101500516 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
101500553 TCGGGATATA
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
45 1 0.01
46 68 0.99
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCAACACGA
Found at i:101500720 original size:49 final size:49
Alignment explanation
Indices: 101500610--101500742 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 49
101500600 CTTGTTAGGT
* * * * *
101500610 GTCAGTGTAAGACCTTTCTGGGACATGGCATCAACATCGATAAATGAGA
1 GTCAGTGTAAGACCTATCTGGGACATGGCATCGACATCAATAAATAAAA
* * * * * *
101500659 GCCAGTGCAAGACCTGTCTGGGACATGGCATCGGCCTCAATATATAAAA
1 GTCAGTGTAAGACCTATCTGGGACATGGCATCGACATCAATAAATAAAA
* * *
101500708 GTCAGTATAAGACCTATCTGGGATACGGCATCGAC
1 GTCAGTGTAAGACCTATCTGGGACATGGCATCGAC
101500743 TTTAATGTGC
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTATCTGGGACATGGCATCGACATCAATAAATAAAA
Found at i:101501682 original size:30 final size:30
Alignment explanation
Indices: 101501642--101501702 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
101501632 GTGTGAAGGT
*
101501642 CACGGCCTAGCACACGGGCGTGTGCCTTGG
1 CACGACCTAGCACACGGGCGTGTGCCTTGG
101501672 CACGACCTAGCACACGGGCGTGTGCCTTGG
1 CACGACCTAGCACACGGGCGTGTGCCTTGG
101501702 C
1 C
101501703 CATGTGACCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.16
Consensus pattern (30 bp):
CACGACCTAGCACACGGGCGTGTGCCTTGG
Found at i:101503295 original size:15 final size:15
Alignment explanation
Indices: 101503275--101503306 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
101503265 ACAAAACCAA
101503275 ATGGGAAAGAAAACT
1 ATGGGAAAGAAAACT
101503290 ATGGGAAAGAAAACT
1 ATGGGAAAGAAAACT
101503305 AT
1 AT
101503307 TATGTTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.25, T:0.16
Consensus pattern (15 bp):
ATGGGAAAGAAAACT
Found at i:101505084 original size:2 final size:2
Alignment explanation
Indices: 101505077--101505506 Score: 294
Period size: 2 Copynumber: 221.5 Consensus size: 2
101505067 ACTTTATTTT
* *
101505077 GA GA GA GA GA GA GA G- GA -A GA GA GA GA GA GA GA GG GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
101505117 GA GA GA GG GA AA GA GA GG GA GG GA GA GA GA GA GA GA GA G- GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
101505158 GA GA GG GG GG GA GG GG GA GA GA GA GA GA G- GA G- GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
101505198 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
101505240 AA GA G- GA GA GA GA GG GA GG GA GA GG GA GA GG GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
101505281 -A GA GG GA GA TG- GA GA GA GA GA GA -A GA GG GA GA GA GG GA GA
1 GA GA GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
101505321 GA GA GA -A GA GA GG GA GA GG GA GA G- GA GA GA GA G- GG GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
101505360 GA GA GA GG GA AA GA GG GA GA GA -A G- GA GG GA GA GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * *
101505400 GG GG GA GA GA GG GA GA GA GG GA GG GA GA GA GA GA GC GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * * * *
101505442 GG GA TA GA GC GA GG GA GG GA GG GA GG GA AA GA GG GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
101505484 GA GG GA GA GA GA GA GG GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA G
101505507 CGAGGGAGGG
Statistics
Matches: 324, Mismatches: 89, Indels: 30
0.73 0.20 0.07
Matches are distributed among these distances:
1 14 0.04
2 309 0.95
3 1 0.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (2 bp):
GA
Found at i:101505515 original size:16 final size:16
Alignment explanation
Indices: 101505077--101505517 Score: 326
Period size: 16 Copynumber: 26.9 Consensus size: 16
101505067 ACTTTATTTT
*
101505077 GAGAGAGAGAGAGAGG
1 GAGAGAGAGAGGGAGG
*
101505093 AAGAGAGAGAGAGAGAGG
1 --GAGAGAGAGAGGGAGG
*
101505111 G-G-GAGAGAGAGAGG
1 GAGAGAGAGAGGGAGG
101505125 GA-A-AGAGAGGGAGG
1 GAGAGAGAGAGGGAGG
101505139 GAGAGAGAGAGAGAGAGG
1 GAGAGAGAGAG-G-GAGG
* *
101505157 G-GAGAGGGGGGGAGGGG
1 GAGAGAGAGAGGGA--GG
101505174 GAGAGAGAGAGAGGAGGG
1 GAGAGAGAGAG-GGA-GG
*
101505192 GAGAGAGAGAGAGAGAGA
1 GAGAGAGAGAG-G-GAGG
* *
101505210 GAGAGAGAGAGAGAGA
1 GAGAGAGAGAGGGAGG
**
101505226 GAGAGAGAGAGGGAAA
1 GAGAGAGAGAGGGAGG
101505242 GAGGAGAGAGAGGGAGG
1 GA-GAGAGAGAGGGAGG
*
101505259 GAGAGGGAGAGGGAGAG
1 GAGAGAGAGAGGGAG-G
101505276 G-GAGA-AGAGGGAGATG
1 GAGAGAGAGAGGGAG--G
*
101505292 GAGAGAGAGAGAAGAGG
1 GAGAGAGAGAG-GGAGG
* *
101505309 GAGAGAGGGAGAGAGAGAA
1 GAGAGA--GAGAGGGAG-G
*
101505328 GAGAGGGAGAGGGAGAG
1 GAGAGAGAGAGGGAG-G
101505345 GAGAGAGAG-GGGAGG
1 GAGAGAGAGAGGGAGG
* **
101505360 GAGAGAGGGAAAGAGG
1 GAGAGAGAGAGGGAGG
101505376 GAGAGA-AGGAGGGAGAG
1 GAGAGAGA-GAGGGAG-G
* *
101505393 G-GAGAGAGGGGGAGA
1 GAGAGAGAGAGGGAGG
*
101505408 GAGGGAGAGAGGGAGG
1 GAGAGAGAGAGGGAGG
*
101505424 GAGAGAGAGAGCGAGG
1 GAGAGAGAGAGGGAGG
* * *
101505440 GAGGGATAGAGCGAGG
1 GAGAGAGAGAGGGAGG
* * **
101505456 GAGGGAGGGAGGGAAA
1 GAGAGAGAGAGGGAGG
*
101505472 GAGGGAGAGAGGGAGG
1 GAGAGAGAGAGGGAGG
*
101505488 GAGAGAGAGAGGGAGA
1 GAGAGAGAGAGGGAGG
* *
101505504 GAGCGAGGGAGGGA
1 GAGAGAGAGAGGGA
101505518 TAGAGCGAGG
Statistics
Matches: 351, Mismatches: 47, Indels: 52
0.78 0.10 0.12
Matches are distributed among these distances:
14 25 0.07
15 22 0.06
16 164 0.47
17 58 0.17
18 64 0.18
19 18 0.05
ACGTcount: A:0.39, C:0.01, G:0.60, T:0.00
Consensus pattern (16 bp):
GAGAGAGAGAGGGAGG
Found at i:101506309 original size:30 final size:31
Alignment explanation
Indices: 101506259--101506325 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 31
101506249 TTTGTTATTG
*
101506259 TAGTCACTCTTGTTAGATAAGTTGTCAATTT
1 TAGTCACTCTTATTAGATAAGTTGTCAATTT
*
101506290 TAGTCA-TCTTATTGGATAAGTTGTCAATTT
1 TAGTCACTCTTATTAGATAAGTTGTCAATTT
101506320 TAGTCA
1 TAGTCA
101506326 GTCTAAGTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 28 0.82
31 6 0.18
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (31 bp):
TAGTCACTCTTATTAGATAAGTTGTCAATTT
Found at i:101506411 original size:31 final size:30
Alignment explanation
Indices: 101506370--101506450 Score: 101
Period size: 31 Copynumber: 2.7 Consensus size: 30
101506360 TTTTAACAGT
*
101506370 AGAGTAACTAAAATTAACAACTTATCTAACG
1 AGAGTGACTAAAATTAACAACTTATCT-ACG
* *
101506401 AGAGTGACTAAAATTGACAACTTATCTACT
1 AGAGTGACTAAAATTAACAACTTATCTACG
*
101506431 AGGAGTGGCTAAAA-TAACAA
1 A-GAGTGACTAAAATTAACAA
101506451 TTTTTTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
30 8 0.18
31 36 0.82
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.25
Consensus pattern (30 bp):
AGAGTGACTAAAATTAACAACTTATCTACG
Found at i:101513409 original size:7 final size:7
Alignment explanation
Indices: 101513397--101513427 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
101513387 GTTCTAAGGC
101513397 GTTTCTT
1 GTTTCTT
101513404 GTTTCTT
1 GTTTCTT
101513411 GTTTCTT
1 GTTTCTT
101513418 GTTTCTT
1 GTTTCTT
101513425 GTT
1 GTT
101513428 AAGGAATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.13, G:0.16, T:0.71
Consensus pattern (7 bp):
GTTTCTT
Found at i:101517166 original size:41 final size:41
Alignment explanation
Indices: 101517121--101517238 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
101517111 TGAAAGATAA
101517121 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
101517162 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101517192 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101517233 ATGTAG
1 ATGTAG
101517239 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:101517177 original size:71 final size:71
Alignment explanation
Indices: 101517089--101517252 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
101517079 GAGATGTATC
101517089 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101517154 AGGACA
66 AGGACA
101517160 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101517225 AGGACA
66 AGGACA
101517231 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
101517253 AGACAATCGG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:101524732 original size:41 final size:41
Alignment explanation
Indices: 101524687--101524804 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
101524677 TGAAAGATAA
101524687 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
101524728 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101524758 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101524799 ATGTAG
1 ATGTAG
101524805 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:101524743 original size:71 final size:71
Alignment explanation
Indices: 101524655--101524818 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
101524645 GAGATGTATC
101524655 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101524720 AGGACA
66 AGGACA
101524726 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101524791 AGGACA
66 AGGACA
101524797 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
101524819 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:101526632 original size:28 final size:29
Alignment explanation
Indices: 101526573--101526675 Score: 131
Period size: 30 Copynumber: 3.6 Consensus size: 29
101526563 GTGACGAGAT
*
101526573 TGGCACTAAGTGTGCAAGCTTGAAATGT--A
1 TGGCACTAAGTGTGCGAGCTT-AAAT-TACA
101526602 TGGCACTAAGT-TGCGAGCTTAAATTACA
1 TGGCACTAAGTGTGCGAGCTTAAATTACA
* *
101526630 TGGCACTATGTGTGGCGAGCTTAAATCACA
1 TGGCACTAAGTGT-GCGAGCTTAAATTACA
101526660 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
101526676 TGATCGATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.02
27 4 0.06
28 19 0.29
29 15 0.23
30 27 0.41
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAATTACA
Found at i:101530439 original size:14 final size:14
Alignment explanation
Indices: 101530420--101530450 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
101530410 TTTGAATTAT
101530420 AATGCCACTAATCC
1 AATGCCACTAATCC
*
101530434 AATGCCGCTAATCC
1 AATGCCACTAATCC
101530448 AAT
1 AAT
101530451 AGTTTAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.32, G:0.10, T:0.23
Consensus pattern (14 bp):
AATGCCACTAATCC
Found at i:101539699 original size:2 final size:2
Alignment explanation
Indices: 101539692--101539728 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
101539682 ACCTTTTTAG
*
101539692 TA TA TA TA TA AA TA TA TA TA TA TA TA TA GTA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
101539729 CTTTTATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:101592672 original size:15 final size:15
Alignment explanation
Indices: 101592652--101592682 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
101592642 CTGTATCAGT
101592652 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
101592667 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
101592682 A
1 A
101592683 CGGAACCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:101597404 original size:18 final size:18
Alignment explanation
Indices: 101597383--101597425 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
101597373 CCTTTCCCCC
*
101597383 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
101597401 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
101597419 TGCTTTC
1 TTCTTTC
101597426 TTTTTATGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:101598067 original size:15 final size:17
Alignment explanation
Indices: 101598047--101598078 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
101598037 ACGTTTCATT
101598047 TATATAA-T-CATAAAA
1 TATATAACTGCATAAAA
101598062 TATATAACTGCATAAAA
1 TATATAACTGCATAAAA
101598079 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (17 bp):
TATATAACTGCATAAAA
Found at i:101598236 original size:17 final size:17
Alignment explanation
Indices: 101598214--101598252 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
101598204 AATTTAGATG
*
101598214 TAAAATATACTA-AAATA
1 TAAAATAAACTAGAAA-A
101598231 TAAAATAAACTAGAAAA
1 TAAAATAAACTAGAAAA
101598248 TAAAA
1 TAAAA
101598253 ATGGAGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAAACTAGAAAA
Found at i:101598335 original size:9 final size:9
Alignment explanation
Indices: 101598321--101598351 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
101598311 TATAAAAAAG
101598321 ATATTAAAT
1 ATATTAAAT
101598330 ATATTAAAT
1 ATATTAAAT
*
101598339 ATATAAAAT
1 ATATTAAAT
101598348 ATAT
1 ATAT
101598352 AGATAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
ATATTAAAT
Found at i:101598352 original size:9 final size:9
Alignment explanation
Indices: 101598310--101598352 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
101598300 TATAACTAAG
*
101598310 ATATAAAAA
1 ATATATAAA
* *
101598319 AGATATTAA
1 ATATATAAA
*
101598328 ATATATTAA
1 ATATATAAA
101598337 ATATATAAA
1 ATATATAAA
101598346 ATATATA
1 ATATATA
101598353 GATAAATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
ATATATAAA
Found at i:101598368 original size:19 final size:21
Alignment explanation
Indices: 101598334--101598377 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
101598324 TTAAATATAT
101598334 TAAATATATAAAATATATAGA
1 TAAATATATAAAATATATAGA
*
101598355 TAAATA-AT-AAATATATATA
1 TAAATATATAAAATATATAGA
101598374 TAAA
1 TAAA
101598378 ATTTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.64
20 2 0.09
21 6 0.27
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
TAAATATATAAAATATATAGA
Found at i:101598554 original size:13 final size:13
Alignment explanation
Indices: 101598538--101598564 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101598528 TTCGAGTCTC
101598538 TAATTCATATTAA
1 TAATTCATATTAA
101598551 TAATTCATATTAA
1 TAATTCATATTAA
101598564 T
1 T
101598565 TATGAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTCATATTAA
Found at i:101598976 original size:21 final size:21
Alignment explanation
Indices: 101598952--101599010 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
101598942 TTTATTTATC
101598952 TATTTAATATTATATTCAATT
1 TATTTAATATTATATTCAATT
*
101598973 TATTTATATATTATA-TCTATT
1 TATTTA-ATATTATATTCAATT
*
101598994 TA-TTATTATATATATTC
1 TATTTAATAT-TATATTC
101599011 TAAATATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 3 0.09
20 7 0.21
21 15 0.45
22 8 0.24
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTAATATTATATTCAATT
Found at i:101599002 original size:16 final size:17
Alignment explanation
Indices: 101598973--101599074 Score: 103
Period size: 17 Copynumber: 6.4 Consensus size: 17
101598963 ATATTCAATT
*
101598973 TATTTATATATTATATC
1 TATTTATATATTATATA
101598990 TATTTAT-TATTATATA
1 TATTTATATATTATATA
* *
101599006 TATTCTAAATATTTTATA
1 TATT-TATATATTATATA
*
101599024 TATTTTTATATT-TATA
1 TATTTATATATTATATA
101599040 TA-TTA-ATA-T-TAT-
1 TATTTATATATTATATA
101599052 T-TTTATATATTATATA
1 TATTTATATATTATATA
101599068 TATTTAT
1 TATTTAT
101599075 TTCTATTTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 16
0.76 0.06 0.17
Matches are distributed among these distances:
12 4 0.06
13 7 0.10
14 4 0.06
15 5 0.07
16 19 0.27
17 20 0.28
18 12 0.17
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTATATATTATATA
Found at i:101599018 original size:18 final size:16
Alignment explanation
Indices: 101598973--101599073 Score: 79
Period size: 16 Copynumber: 6.4 Consensus size: 16
101598963 ATATTCAATT
*
101598973 TATTTATATATTATATC
1 TATTTA-ATATTATATA
*
101598990 TATTTATTATTATATA
1 TATTTAATATTATATA
*
101599006 TATTCTAAATATTTTATA
1 TATT-T-AATATTATATA
*
101599024 TATTTTTATATT-TATA
1 TA-TTTAATATTATATA
101599040 TA-TTAATA-T-TAT-
1 TATTTAATATTATATA
101599052 T-TTTATATATTATATA
1 TATTTA-ATATTATATA
101599068 TATTTA
1 TATTTA
101599074 TTTCTATTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
12 4 0.06
13 7 0.10
14 6 0.09
15 3 0.04
16 19 0.28
17 16 0.23
18 12 0.17
19 2 0.03
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTAATATTATATA
Found at i:101599056 original size:19 final size:18
Alignment explanation
Indices: 101598975--101599072 Score: 76
Period size: 19 Copynumber: 5.1 Consensus size: 18
101598965 ATTCAATTTA
101598975 TTTATATATTATATCTATT
1 TTTATATATTATAT-TATT
101598994 TATTAT-TATATATATTCTAAATAT
1 T-TTATATAT-TATA-T-T--AT-T
*
101599018 TTTATATATT-T-TTATA
1 TTTATATATTATATTATT
101599034 TTTATATATTAATATTATT
1 TTTATATATT-ATATTATT
101599053 TTTATATATTATATATATT
1 TTTATATATTATAT-TATT
101599072 T
1 T
101599073 ATTTCTATTT
Statistics
Matches: 66, Mismatches: 2, Indels: 22
0.73 0.02 0.24
Matches are distributed among these distances:
16 10 0.15
17 2 0.03
18 5 0.08
19 24 0.36
20 9 0.14
21 3 0.05
22 1 0.02
23 7 0.11
24 5 0.08
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATATTATATTATT
Found at i:101599065 original size:32 final size:33
Alignment explanation
Indices: 101599015--101599098 Score: 82
Period size: 32 Copynumber: 2.6 Consensus size: 33
101599005 ATATTCTAAA
*
101599015 TATTTTATATATTTTTATATTTATATATTAATAT
1 TATTTTATATA-TATTATATTTATATATTAATAT
* * **
101599049 TATTTT-TATATATTATATATATTTATTTCTAT
1 TATTTTATATATATTATATTTATATATTAATAT
* *
101599081 T-TTTTGTATACATTATAT
1 TATTTTATATATATTATAT
101599099 ACAATACAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
31 4 0.09
32 29 0.67
33 4 0.09
34 6 0.14
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (33 bp):
TATTTTATATATATTATATTTATATATTAATAT
Found at i:101599074 original size:42 final size:41
Alignment explanation
Indices: 101598944--101599074 Score: 113
Period size: 42 Copynumber: 3.0 Consensus size: 41
101598934 TGGTTTAATT
* *
101598944 TATTTATCTATTTAATATTATATTCAATTTATT-TATATATTATA
1 TATTTAT-TA-TTAATATTAT-TTAAATATATTATATATATT-TA
* *
101598988 TCTATTTATTATT-ATATATATTCTAAATATTTTATATATTTTTA
1 --TATTTATTATTAATAT-TATT-TAAATATATTATATATATTTA
**
101599032 TATTTATATATTAATATTATTTTTATATATTATATATATTTA
1 TATTTAT-TATTAATATTATTTAAATATATTATATATATTTA
101599074 T
1 T
101599075 TTCTATTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
42 25 0.35
43 13 0.18
44 18 0.25
45 9 0.12
46 7 0.10
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (41 bp):
TATTTATTATTAATATTATTTAAATATATTATATATATTTA
Found at i:101600361 original size:14 final size:14
Alignment explanation
Indices: 101600339--101600372 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
101600329 AATAGAAAAC
*
101600339 TTTTCATCACTTTT
1 TTTTTATCACTTTT
101600353 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
101600367 TCTTTA
1 TTTTTA
101600373 GCCTCCGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:101600675 original size:20 final size:20
Alignment explanation
Indices: 101600652--101600698 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
101600642 GATTTGATTA
101600652 TTATTATATATATT-TTTACT
1 TTATTATATATATTCTTTA-T
* * *
101600672 TTATTCTCTTTATTCTTTAT
1 TTATTATATATATTCTTTAT
101600692 TTATTAT
1 TTATTAT
101600699 TTACTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (20 bp):
TTATTATATATATTCTTTAT
Found at i:101601710 original size:16 final size:16
Alignment explanation
Indices: 101601689--101601739 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
101601679 AAGAAAGAGC
101601689 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
101601705 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
101601721 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
101601737 AAA
1 AAA
101601740 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:101602678 original size:16 final size:17
Alignment explanation
Indices: 101602657--101602690 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
101602647 AATTAGAGAA
101602657 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
101602673 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
101602690 T
1 T
101602691 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:101603381 original size:15 final size:15
Alignment explanation
Indices: 101603363--101603393 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
101603353 ATAACTAAAG
101603363 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
101603378 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
101603393 A
1 A
101603394 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Done.