Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 333 of 770
Found at i:101947585 original size:14 final size:14
Alignment explanation
Indices: 101947538--101947585 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
101947528 GTACGAATGG
*
101947538 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
101947552 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
101947566 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
101947580 ATTGGT
1 AATGGT
101947586 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:101953767 original size:30 final size:30
Alignment explanation
Indices: 101953671--101953767 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
101953661 TAAACTAAAA
* *
101953671 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
101953701 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* *
101953731 TAAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
101953760 ATGAGCTA
1 -TGAGCTA
101953768 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:101956073 original size:30 final size:30
Alignment explanation
Indices: 101955988--101956084 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
101955978 TAAACTAAAA
* * *
101955988 TGAGATAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
101956018 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
101956048 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
101956077 ATGAGCTA
1 -TGAGCTA
101956085 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:101956655 original size:18 final size:18
Alignment explanation
Indices: 101956634--101956696 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
101956624 ATACTCACTC
101956634 TCTTTTTCAATTTTCTTT
1 TCTTTTTCAATTTTCTTT
**
101956652 TCTTGATCAA-TTTCTTTT
1 TCTTTTTCAATTTTC-TTT
*
101956670 TCTTTTTCAATTTTGTTTT
1 TCTTTTTCAATTTT-CTTT
101956689 TCTTTTTC
1 TCTTTTTC
101956697 TCATTCTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 4 0.11
18 19 0.51
19 14 0.38
ACGTcount: A:0.11, C:0.16, G:0.03, T:0.70
Consensus pattern (18 bp):
TCTTTTTCAATTTTCTTT
Found at i:101961386 original size:18 final size:18
Alignment explanation
Indices: 101961365--101961427 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
101961355 ATACTCACTC
101961365 TCTTTTTCAATTTTCTTT
1 TCTTTTTCAATTTTCTTT
**
101961383 TCTTGATCAA-TTTCTTTT
1 TCTTTTTCAATTTTC-TTT
*
101961401 TCTTTTTCAATTTTGTTTT
1 TCTTTTTCAATTTT-CTTT
101961420 TCTTTTTC
1 TCTTTTTC
101961428 TCATTCTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 4 0.11
18 19 0.51
19 14 0.38
ACGTcount: A:0.11, C:0.16, G:0.03, T:0.70
Consensus pattern (18 bp):
TCTTTTTCAATTTTCTTT
Found at i:101972824 original size:42 final size:42
Alignment explanation
Indices: 101972761--101972866 Score: 194
Period size: 42 Copynumber: 2.5 Consensus size: 42
101972751 CATTTAAGCC
101972761 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
1 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
*
101972803 TCTTAGTTTAATAAATAAGTTGCTGGTCATTAATACAACTCA
1 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
101972845 TCTTAGTTTAATTAAATGAGTT
1 TCTTAGTTTAA-TAAATGAGTT
101972867 TATTTAATGA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
42 52 0.85
43 9 0.15
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (42 bp):
TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
Found at i:101972868 original size:14 final size:14
Alignment explanation
Indices: 101972849--101972893 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
101972839 AACTCATCTT
*
101972849 AGTTTAATTAAATG
1 AGTTTAATTTAATG
101972863 AGTTT-ATTTAATG
1 AGTTTAATTTAATG
*
101972876 AATTTAATTTAATG
1 AGTTTAATTTAATG
101972890 AGTT
1 AGTT
101972894 GCTTCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:101974076 original size:13 final size:14
Alignment explanation
Indices: 101974058--101974091 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
101974048 AAGTAAGTTT
101974058 AAAAAAAA-TTCAA
1 AAAAAAAATTTCAA
101974071 AAAAAAAATTTCAA
1 AAAAAAAATTTCAA
101974085 AAAAAAA
1 AAAAAAA
101974092 CAAAATCTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAAAAATTTCAA
Found at i:101979397 original size:20 final size:20
Alignment explanation
Indices: 101979372--101979438 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 20
101979362 TTGCTGGTCA
101979372 TTAATACAACTCATCTTAGT
1 TTAATACAACTCATCTTAGT
*
101979392 TTAATA-AA-TGAGT-TGCTAGT
1 TTAATACAACTCA-TCT--TAGT
101979412 CATTAATACAACTCATCTTAGT
1 --TTAATACAACTCATCTTAGT
101979434 TTAAT
1 TTAAT
101979439 TAAATGAGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 15 0.41
22 10 0.27
23 3 0.08
24 3 0.08
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (20 bp):
TTAATACAACTCATCTTAGT
Found at i:101979402 original size:42 final size:42
Alignment explanation
Indices: 101979343--101979448 Score: 194
Period size: 42 Copynumber: 2.5 Consensus size: 42
101979333 CATTTAAGCC
*
101979343 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
1 TCTTAGTTTAATAAATGAGTTGCTAGTCATTAATACAACTCA
101979385 TCTTAGTTTAATAAATGAGTTGCTAGTCATTAATACAACTCA
1 TCTTAGTTTAATAAATGAGTTGCTAGTCATTAATACAACTCA
101979427 TCTTAGTTTAATTAAATGAGTT
1 TCTTAGTTTAA-TAAATGAGTT
101979449 TATTTAATGA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
42 52 0.84
43 10 0.16
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (42 bp):
TCTTAGTTTAATAAATGAGTTGCTAGTCATTAATACAACTCA
Found at i:101979417 original size:22 final size:22
Alignment explanation
Indices: 101979350--101979419 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
101979340 GCCTCTTAGT
*
101979350 TTAATAAATGAGTTGCTGGTCA
1 TTAATAAATGAGTTGCTAGTCA
*
101979372 TTAATACAACTCA--T-CTTAGT--
1 TTAATA-AA-TGAGTTGC-TAGTCA
101979392 TTAATAAATGAGTTGCTAGTCA
1 TTAATAAATGAGTTGCTAGTCA
101979414 TTAATA
1 TTAATA
101979420 CAACTCATCT
Statistics
Matches: 37, Mismatches: 3, Indels: 16
0.66 0.05 0.29
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 11 0.30
21 2 0.05
22 16 0.43
23 2 0.05
24 2 0.05
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (22 bp):
TTAATAAATGAGTTGCTAGTCA
Found at i:101979433 original size:22 final size:22
Alignment explanation
Indices: 101979368--101979433 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
101979358 TGAGTTGCTG
101979368 GTCATTAATACAACTCATCTTA
1 GTCATTAATACAACTCATCTTA
*
101979390 GT--TTAATA-AA-TGAGT-TGCTA
1 GTCATTAATACAACTCA-TCT--TA
101979410 GTCATTAATACAACTCATCTTA
1 GTCATTAATACAACTCATCTTA
101979432 GT
1 GT
101979434 TTAATTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 10 0.29
22 12 0.35
23 3 0.09
24 3 0.09
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.38
Consensus pattern (22 bp):
GTCATTAATACAACTCATCTTA
Found at i:101979450 original size:14 final size:14
Alignment explanation
Indices: 101979431--101979475 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
101979421 AACTCATCTT
*
101979431 AGTTTAATTAAATG
1 AGTTTAATTTAATG
101979445 AGTTT-ATTTAATG
1 AGTTTAATTTAATG
*
101979458 AATTTAATTTAATG
1 AGTTTAATTTAATG
101979472 AGTT
1 AGTT
101979476 GCTTCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:101985231 original size:10 final size:10
Alignment explanation
Indices: 101985218--101985263 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
101985208 AGCTCACTTG
101985218 AGCTCGTTTT
1 AGCTCGTTTT
*
101985228 AGCTCGTTTG
1 AGCTCGTTTT
*
101985238 AGCTCGAATTT
1 AGCTCG-TTTT
*
101985249 AGCTCGTTTC
1 AGCTCGTTTT
101985259 AGCTC
1 AGCTC
101985264 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:101985251 original size:21 final size:20
Alignment explanation
Indices: 101985215--101985263 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
101985205 ATCAGCTCAC
*
101985215 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
101985235 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
101985256 TTCAGCTC
1 TTGAGCTC
101985264 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:101985506 original size:13 final size:13
Alignment explanation
Indices: 101985488--101985512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101985478 AATAGTTGTG
101985488 TGTTATTTAATTA
1 TGTTATTTAATTA
101985501 TGTTATTTAATT
1 TGTTATTTAATT
101985513 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:101988174 original size:20 final size:20
Alignment explanation
Indices: 101988151--101988198 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
101988141 AGCTCCGTCC
101988151 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
101988171 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
101988191 AGCTCAAC
1 AGCTCAAC
101988199 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:101991904 original size:15 final size:15
Alignment explanation
Indices: 101991884--101991931 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
101991874 TCAAAGATGG
101991884 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
101991899 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
101991914 -TTTATGGATATAAA
1 GTTTATGGATATGAA
101991928 GTTT
1 GTTT
101991932 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:101991911 original size:29 final size:29
Alignment explanation
Indices: 101991878--101991937 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
101991868 AAGGATTCAA
* *
101991878 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
101991907 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
101991936 AG
1 AG
101991938 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:101993794 original size:11 final size:10
Alignment explanation
Indices: 101993778--101993816 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
101993768 ACACCTCTCC
101993778 TTTTTTTCGAA
1 TTTTTTT-GAA
101993789 TTTTTTTTGAA
1 -TTTTTTTGAA
*
101993800 TTTTTTTAAA
1 TTTTTTTGAA
101993810 TTTTTTT
1 TTTTTTT
101993817 TGAAATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 16 0.62
11 3 0.12
12 7 0.27
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:101993805 original size:21 final size:21
Alignment explanation
Indices: 101993779--101993820 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
101993769 CACCTCTCCT
*
101993779 TTTTTTCGAATTTTTTTTGAA
1 TTTTTTCAAATTTTTTTTGAA
*
101993800 TTTTTTTAAATTTTTTTTGAA
1 TTTTTTCAAATTTTTTTTGAA
101993821 ATATTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (21 bp):
TTTTTTCAAATTTTTTTTGAA
Found at i:101993817 original size:11 final size:11
Alignment explanation
Indices: 101993787--101993831 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
101993777 CTTTTTTTCG
*
101993787 AATTTTTTTTG
1 AATTTTTTTTA
101993798 AA-TTTTTTTA
1 AATTTTTTTTA
101993808 AATTTTTTTTGA
1 AATTTTTTTT-A
*
101993820 AATATTTTTTA
1 AATTTTTTTTA
101993831 A
1 A
101993832 TATACTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 9 0.30
11 11 0.37
12 10 0.33
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (11 bp):
AATTTTTTTTA
Found at i:101993822 original size:12 final size:11
Alignment explanation
Indices: 101993778--101993820 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
101993768 ACACCTCTCC
*
101993778 TTTTTTTCGAA
1 TTTTTTTTGAA
101993789 TTTTTTTTGAA
1 TTTTTTTTGAA
*
101993800 -TTTTTTTAAA
1 TTTTTTTTGAA
101993810 TTTTTTTTGAA
1 TTTTTTTTGAA
101993821 ATATTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.70
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:101993827 original size:21 final size:21
Alignment explanation
Indices: 101993787--101993827 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
101993777 CTTTTTTTCG
* *
101993787 AATTTTTTTTGAATTTTTTTA
1 AATTTTTTTTGAAATATTTTA
101993808 AATTTTTTTTGAAATATTTT
1 AATTTTTTTTGAAATATTTT
101993828 TTAATATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
AATTTTTTTTGAAATATTTTA
Found at i:101993833 original size:10 final size:11
Alignment explanation
Indices: 101993791--101993842 Score: 52
Period size: 12 Copynumber: 4.5 Consensus size: 11
101993781 TTTTCGAATT
*
101993791 TTTTTTGAAT-
1 TTTTTTAAATA
*
101993801 TTTTTTAAATT
1 TTTTTTAAATA
101993812 TTTTTTGAAATA
1 TTTTTT-AAATA
101993824 TTTTTTAATATA
1 TTTTTTAA-ATA
101993836 CTTTTTT
1 -TTTTTT
101993843 TATCACTACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
10 9 0.25
11 8 0.22
12 13 0.36
13 6 0.17
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (11 bp):
TTTTTTAAATA
Found at i:101997712 original size:10 final size:10
Alignment explanation
Indices: 101997697--101997723 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
101997687 TAAGTTGAAG
101997697 TTGAGCTGAT
1 TTGAGCTGAT
101997707 TTGAGCTGAT
1 TTGAGCTGAT
101997717 TTGAGCT
1 TTGAGCT
101997724 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:102002895 original size:11 final size:12
Alignment explanation
Indices: 102002879--102002909 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
102002869 TAAATCACTT
102002879 TTTTTTTTCG-A
1 TTTTTTTTCGAA
102002890 TTTTTTTTCGAA
1 TTTTTTTTCGAA
102002902 TTTTTTTT
1 TTTTTTTT
102002910 TCAAACTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.77
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:102004542 original size:10 final size:10
Alignment explanation
Indices: 102004527--102004553 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
102004517 TAAGTTGAAG
102004527 TTGAGCTGAT
1 TTGAGCTGAT
102004537 TTGAGCTGAT
1 TTGAGCTGAT
102004547 TTGAGCT
1 TTGAGCT
102004554 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:102023753 original size:50 final size:49
Alignment explanation
Indices: 102023678--102023901 Score: 204
Period size: 50 Copynumber: 4.5 Consensus size: 49
102023668 TGAGTACACG
*
102023678 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-ATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATA-T-TTAAGTCACA
* * * * *
102023728 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTT-CGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAAT-ATTTAAG-TCACA
* * ** * * *
102023779 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-ATATTTAAGTCACA
* ** * *
102023829 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGT-TTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATATTTAAGTCACA
102023876 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
102023902 TGCGTATCAG
Statistics
Matches: 144, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 30 0.21
48 1 0.01
49 1 0.01
50 71 0.49
51 38 0.26
52 2 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATATTTAAGTCACA
Found at i:102028421 original size:40 final size:40
Alignment explanation
Indices: 102028224--102028458 Score: 221
Period size: 39 Copynumber: 6.0 Consensus size: 40
102028214 ACTTGAAACC
* *
102028224 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * *
102028263 AATACCAGCTCGA-AGCCTGCGGGACTTT-TGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * * * *
102028302 ATTTCCAGCGCGTAGCCTGC-GGACCTTAAGTCCGGTTAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * *
102028341 AATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGGTAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* *
102028380 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
* * * *
102028420 AATTCTAGCATATAGCCTGCGGGTCTTTAAGCCTGGATA
1 AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATA
102028459 CCATCAAATA
Statistics
Matches: 165, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
38 17 0.10
39 96 0.58
40 52 0.32
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACTTTAAGCCCGGATAT
Found at i:102035379 original size:39 final size:39
Alignment explanation
Indices: 102035261--102035443 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
102035251 TCGTTCAAAC
* * ** * **
102035261 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
102035301 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
102035341 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
102035380 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
102035419 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
102035444 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:102039975 original size:94 final size:94
Alignment explanation
Indices: 102039530--102039962 Score: 702
Period size: 94 Copynumber: 4.7 Consensus size: 94
102039520 ACTATAACCG
* *
102039530 TATATGCTAATT-GAATTAAGTAAATTGCCTTATTATAATGAG-T--CA---ACA-TATGTGTGC
1 TATATGCT-ATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
102039587 GGAATTAAATGTCACTTTGTGTGCAGATTT
65 GGAATTAAATGTCACTTTGTGTGCAGATTT
* * *
102039617 TATATGCTATTCGAAGTAAGTTAATTGCCTTATTATAATGAGTCAACATGGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
102039682 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* * *
102039711 TATATGCTATTTGAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
102039776 AAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
102039805 TACATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
102039870 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
102039899 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATAAGTTAACATTGGCACTATGTGTGC
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
102039963 AGATTTGAAT
Statistics
Matches: 322, Mismatches: 16, Indels: 9
0.93 0.05 0.03
Matches are distributed among these distances:
86 3 0.01
87 36 0.11
90 2 0.01
93 2 0.01
94 279 0.87
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (94 bp):
TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:102040029 original size:24 final size:24
Alignment explanation
Indices: 102039997--102040059 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
102039987 GAAAATTTCA
* *
102039997 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGCGCTTAAT-T
*
102040021 GGCACTATGTGCGCGCGCTTAATT
1 GGCACTATGTGTGCGCGCTTAATT
*
102040045 AGCACTATGTGTGCG
1 GGCACTATGTGTGCG
102040060 AACTCGGGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (24 bp):
GGCACTATGTGTGCGCGCTTAATT
Found at i:102042296 original size:39 final size:39
Alignment explanation
Indices: 102042253--102042390 Score: 159
Period size: 39 Copynumber: 3.5 Consensus size: 39
102042243 CCGGACATAT
* * *
102042253 TTCCAGCGCGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
102042292 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
** * * * * * *
102042331 TTCCAGCTTATAGCCTGTGGGTCTTTAAGCCCAGATATAA
1 TTCCAGCACATAGCCTG-CGGACCTTAAGTCCGGGTATAA
*
102042371 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
102042391 GTCTTTAAGC
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 53 0.62
40 32 0.38
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:102042370 original size:40 final size:40
Alignment explanation
Indices: 102042287--102042407 Score: 154
Period size: 40 Copynumber: 3.0 Consensus size: 40
102042277 TAAGTCCGGT
* * * * * *
102042287 TATAATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGG
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
* *
102042326 TATAATTCCAGCTTATAGCCTGTGGGTCTTTAAGCCCAGA
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
*
102042366 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGA
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
102042406 TA
1 TA
102042408 CACATCAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 20 0.29
40 50 0.71
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCAGA
Found at i:102043989 original size:68 final size:68
Alignment explanation
Indices: 102043842--102043997 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
102043832 AGCCGATTTG
* * * * *
102043842 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
102043907 TATC
65 TATA
* *
102043911 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
102043973 ATATAGTA
62 ATATA-TA
102043981 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
102043998 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:102051484 original size:68 final size:68
Alignment explanation
Indices: 102051337--102051492 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
102051327 AGCCGATTTG
* * * * *
102051337 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
102051402 TATC
65 TATA
* *
102051406 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
102051468 ATATAGTA
62 ATATA-TA
102051476 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
102051493 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:102052932 original size:2 final size:2
Alignment explanation
Indices: 102052920--102052961 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
102052910 TACTTTCAGA
102052920 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102052961 A
1 A
102052962 CGACTTTCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102058441 original size:50 final size:50
Alignment explanation
Indices: 102058366--102058590 Score: 226
Period size: 50 Copynumber: 4.5 Consensus size: 50
102058356 TGAGTACACG
* *
102058366 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** *
102058416 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * * * *
102058467 TGTGTAGTACTAAGTGCAGACTACTACTTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * *
102058517 TGTGTAGTACTAA-TGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
102058565 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
102058591 TGCGTATCAG
Statistics
Matches: 145, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
47 1 0.01
48 20 0.14
49 35 0.24
50 51 0.35
51 32 0.22
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:102058598 original size:98 final size:99
Alignment explanation
Indices: 102058366--102058602 Score: 250
Period size: 101 Copynumber: 2.4 Consensus size: 99
102058356 TGAGTACACG
* * * * *
102058366 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TGTGAAGTCACATGTGTAGTACTAAGT
* *
102058431 GCAGGCTACTATGCGTACTCAATGACTTCGATCACG
65 GCAGGCTACTACGCGTACTCAATGA-TTCGATCACA
* * *
102058467 TGTGTAGTACTAAGTGCAGACTACTACT-TGTATCAGATGGTGAGGTCACGTGTGTAGTACTAA-
1 TGTGTAGTACTAAGTGCAGGCTACTA-TGTGTATCAGAT-GTGAAGTCACATGTGTAGTACTAAG
* * * *
102058530 TGCAGGCTACTACGTGTAC-CGGATTG-TT-GGTCGCA
64 TGCAGGCTACTACGCGTACTC--AATGATTCGATCACA
*
102058565 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
102058603 AGCTTCGGCT
Statistics
Matches: 115, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
97 1 0.01
98 38 0.33
99 3 0.03
100 18 0.16
101 55 0.48
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGTGAAGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGCGTACTCAATGATTCGATCACA
Found at i:102062373 original size:43 final size:44
Alignment explanation
Indices: 102062226--102062444 Score: 150
Period size: 42 Copynumber: 5.1 Consensus size: 44
102062216 TCACATATAC
* * * *
102062226 CATA-CAATGCCAACGTCCCAGACGTGGTCTT-CATGC-TATCT
1 CATATCAATGCCAACGTCCCAGACATGGTCTTACATGCAAACCA
* *
102062267 CATATCAATGCC-ACTGTCCCAGACAGGGTCTT--ATGCAAATCA
1 CATATCAATGCCAAC-GTCCCAGACATGGTCTTACATGCAAACCA
* * * * * * *
102062309 AATA-CGATGCCGATGTCTCAGACATGGTCTTACTTG-TAACCA
1 CATATCAATGCCAACGTCCCAGACATGGTCTTACATGCAAACCA
* * *
102062351 CATATCAATGCCAACGTCTCAGACGTGGTCTTACATGAAAACACA
1 CATATCAATGCCAACGTCCCAGACATGGTCTTACATGCAAAC-CA
* * ** * * *
102062396 TATATCGATGCCAACGTCCCAGATGTGTTCTTCCATG-AAAACA
1 CATATCAATGCCAACGTCCCAGACATGGTCTTACATGCAAACCA
102062439 CATATC
1 CATATC
102062445 GAAATCCTAT
Statistics
Matches: 142, Mismatches: 27, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
41 31 0.22
42 36 0.25
43 36 0.25
44 6 0.04
45 33 0.23
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (44 bp):
CATATCAATGCCAACGTCCCAGACATGGTCTTACATGCAAACCA
Found at i:102062433 original size:45 final size:45
Alignment explanation
Indices: 102062230--102062443 Score: 155
Period size: 45 Copynumber: 5.0 Consensus size: 45
102062220 ATATACCATA
** * *
102062230 CAATGCCAACGTCCCAGACGTGGTCTT-CATGCTATCTC--ATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATAT
*
102062272 CAATGCC-ACTGTCCCAGACAG-GGTCTT--ATGCAAATCA-A-ATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACATG-AAAACACATATAT
* * * * * * * *
102062313 CGATGCCGATGTCTCAGACATGGTCTTACTTG-TAAC-CACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATAT
*
102062356 CAATGCCAACGTCTCAGACGTGGTCTTACATGAAAACACATATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATAT
* * * *
102062401 CGATGCCAACGTCCCAGATGTGTTCTTCCATGAAAACACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATAT
102062444 CGAAATCCTA
Statistics
Matches: 137, Mismatches: 22, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
41 28 0.20
42 32 0.23
43 30 0.22
44 3 0.02
45 44 0.32
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (45 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATAT
Found at i:102062966 original size:31 final size:30
Alignment explanation
Indices: 102062931--102062992 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 30
102062921 GTGTTCATAC
102062931 AAGTCCA-TATATTTCATT-TTTTTTCACATTT
1 AAGTCCATTA-ATTT-ATTATTTTTTCA-ATTT
*
102062962 AAGTCCCTTAATTTATTATTTTTTCAATTT
1 AAGTCCATTAATTTATTATTTTTTCAATTT
102062992 A
1 A
102062993 CTCATAACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 8 0.29
31 18 0.64
32 2 0.07
ACGTcount: A:0.27, C:0.15, G:0.03, T:0.55
Consensus pattern (30 bp):
AAGTCCATTAATTTATTATTTTTTCAATTT
Found at i:102071338 original size:50 final size:50
Alignment explanation
Indices: 102071253--102071442 Score: 199
Period size: 50 Copynumber: 3.8 Consensus size: 50
102071243 ATTGTAAATA
* *
102071253 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTCAAGT
* * * *
102071303 CGCATGTGTAGTACTAAGTGTAGGCTACT-CTGTGTACTCAATGACT-TCGA-T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTAC-GTGTA-TC-AT-ACTGTCAAGT
* * * *
102071354 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGATGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTG-TCAAGT
* *
102071404 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
102071443 ATAGCTTTGG
Statistics
Matches: 117, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 3 0.03
50 70 0.60
51 34 0.29
52 5 0.04
53 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTCAAGT
Found at i:102075001 original size:31 final size:31
Alignment explanation
Indices: 102074963--102075022 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
102074953 ATGGGAAATA
102074963 ACCTATCATGCATGAAACCAATGATATGATG
1 ACCTATCATGCATGAAACCAATGATATGATG
*
102074994 ACCTATCATGCATGAAACTAATGATATGA
1 ACCTATCATGCATGAAACCAATGATATGA
102075023 GGTTTTCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (31 bp):
ACCTATCATGCATGAAACCAATGATATGATG
Found at i:102075008 original size:17 final size:16
Alignment explanation
Indices: 102074962--102075011 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
102074952 AATGGGAAAT
102074962 AACCTATCATGCATGA
1 AACCTATCATGCATGA
* *
102074978 AACCAATGAT--ATGA
1 AACCTATCATGCATGA
*
102074992 TGACCTATCATGCATGA
1 -AACCTATCATGCATGA
102075009 AAC
1 AAC
102075012 TAATGATATG
Statistics
Matches: 25, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
14 4 0.16
15 7 0.28
16 10 0.40
17 4 0.16
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (16 bp):
AACCTATCATGCATGA
Found at i:102075457 original size:31 final size:31
Alignment explanation
Indices: 102075419--102075488 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
102075409 AGTCACACCA
102075419 GCGTGTGAGTCCACACGGCCCACCTACACGG
1 GCGTGTGAGTCCACACGGCCCACCTACACGG
*
102075450 GCGTGTGAGTCCACACGGCCCACTTACACGG
1 GCGTGTGAGTCCACACGGCCCACCTACACGG
102075481 GCGTGTGA
1 GCGTGTGA
102075489 CACTTTATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (31 bp):
GCGTGTGAGTCCACACGGCCCACCTACACGG
Found at i:102076047 original size:25 final size:26
Alignment explanation
Indices: 102076019--102076073 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
102076009 TTAATTTATG
102076019 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
102076044 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
102076069 TTATA
1 TTATA
102076074 AAATATGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:102085370 original size:20 final size:20
Alignment explanation
Indices: 102085333--102085372 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
102085323 ATCTCAAACC
102085333 ACATAGTTCATATACATTTA
1 ACATAGTTCATATACATTTA
* * *
102085353 ACATATTTCCTATTCATTTA
1 ACATAGTTCATATACATTTA
102085373 CACTATAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (20 bp):
ACATAGTTCATATACATTTA
Found at i:102085497 original size:36 final size:36
Alignment explanation
Indices: 102085457--102085528 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
102085447 ATAGTATACA
* *
102085457 TTTCGAATGTACTTGAATCGGATATACATCACATAT
1 TTTCGAACGTACTTGAATCAGATATACATCACATAT
102085493 TTTCGAACGTACTTGAATCAGATATACATCACATAT
1 TTTCGAACGTACTTGAATCAGATATACATCACATAT
102085529 AATCATTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (36 bp):
TTTCGAACGTACTTGAATCAGATATACATCACATAT
Found at i:102085717 original size:42 final size:41
Alignment explanation
Indices: 102085619--102085717 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 41
102085609 CCATCATCCT
* * *
102085619 AGACGTGGTTTTACATGTAATCAAATATTGATGCCACTCCC
1 AGACGTGGTCTTACACGAAATCAAATATTGATGCCACTCCC
* *
102085660 AGACAG-GGTCCTACACGAAATCAAATA-TGATGCCAATGTCCC
1 AGAC-GTGGTCTTACACGAAATCAAATATTGATGCC-A-CTCCC
*
102085702 AGACGTGATCTTACAC
1 AGACGTGGTCTTACAC
102085718 ATAAATCATA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
40 7 0.15
41 23 0.49
42 17 0.36
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
AGACGTGGTCTTACACGAAATCAAATATTGATGCCACTCCC
Found at i:102090189 original size:27 final size:28
Alignment explanation
Indices: 102090133--102090202 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
102090123 AAATTTGTAC
102090133 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
102090161 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
102090188 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
102090203 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:102090213 original size:27 final size:27
Alignment explanation
Indices: 102090133--102090214 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
102090123 AAATTTGTAC
* *
102090133 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
102090161 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
102090188 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
102090215 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:102098004 original size:27 final size:28
Alignment explanation
Indices: 102097948--102098017 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
102097938 AAATTTGTAC
102097948 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
102097976 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
102098003 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
102098018 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:102098028 original size:27 final size:27
Alignment explanation
Indices: 102097948--102098029 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
102097938 AAATTTGTAC
* *
102097948 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
102097976 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
102098003 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
102098030 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:102100538 original size:40 final size:40
Alignment explanation
Indices: 102100457--102100560 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
102100447 CTCGCACGAA
* *
102100457 TGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *** *
102100497 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
*
102100537 TGTCTTCGGG-CTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
102100561 CATTCAATTT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 13 0.24
40 42 0.76
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
Found at i:102105063 original size:31 final size:32
Alignment explanation
Indices: 102105025--102105089 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
102105015 ATAAAACATG
102105025 AAATTAAAGGATTAGG-GCATCGAATTCACCA
1 AAATTAAAGGATTAGGAGCATCGAATTCACCA
102105056 AAATTAAAGGATTAGGAGCATCGAATTCACCA
1 AAATTAAAGGATTAGGAGCATCGAATTCACCA
102105088 AA
1 AA
102105090 TCTAAGGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 16 0.48
32 17 0.52
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (32 bp):
AAATTAAAGGATTAGGAGCATCGAATTCACCA
Found at i:102107050 original size:22 final size:22
Alignment explanation
Indices: 102107007--102107050 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
102106997 GCACCAATGC
** **
102107007 CGCTATCGTACATCGCTGTTGT
1 CGCTATCACACATCGCCATTGT
102107029 CGCTATCACACATCGCCATTGT
1 CGCTATCACACATCGCCATTGT
102107051 TGCCGCACGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.32
Consensus pattern (22 bp):
CGCTATCACACATCGCCATTGT
Found at i:102108967 original size:40 final size:40
Alignment explanation
Indices: 102108922--102109089 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
102108912 CGGAATATAA
102108922 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
102108962 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
102109002 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
102109042 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
102109082 CCGGATAT
1 CCGGATAT
102109090 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102111544 original size:27 final size:26
Alignment explanation
Indices: 102111496--102111547 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
102111486 GCGAGGCTGC
*
102111496 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
102111522 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
102111548 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:102113002 original size:93 final size:93
Alignment explanation
Indices: 102112890--102113061 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
102112880 GCCCATAAGT
* *
102112890 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102112955 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
102112983 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102113048 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
102113062 CAAATATCCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:102113057 original size:46 final size:46
Alignment explanation
Indices: 102112882--102113057 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
102112872 TGTAACCCGC
* * *
102112882 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
102112928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
102112978 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
102113021 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
102113058 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:102115466 original size:30 final size:30
Alignment explanation
Indices: 102115422--102115510 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
102115412 CAAAGATAAC
102115422 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
102115451 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
102115481 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
102115511 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:102115470 original size:15 final size:15
Alignment explanation
Indices: 102115422--102115501 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
102115412 CAAAGATAAC
*
102115422 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
102115436 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
102115451 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
102115466 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
102115481 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
102115496 AAGAAA
1 AAGAAA
102115502 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:102115510 original size:15 final size:15
Alignment explanation
Indices: 102115433--102115510 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
102115423 AGAAAACCGA
102115433 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
102115448 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
102115462 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
102115477 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
102115493 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
102115508 ATA
1 ATA
102115511 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:102118574 original size:93 final size:93
Alignment explanation
Indices: 102118462--102118633 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
102118452 GCCCATAAGT
* *
102118462 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102118527 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
102118555 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102118620 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
102118634 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:102118629 original size:46 final size:46
Alignment explanation
Indices: 102118454--102118629 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
102118444 TGTAACCCGC
* * *
102118454 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
102118500 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
102118546 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
102118593 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
102118630 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:102120584 original size:27 final size:27
Alignment explanation
Indices: 102120554--102120672 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
102120544 GGGGCAAAAT
* * *
102120554 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
102120581 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
102120608 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
102120635 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
102120662 GGTAATTCTAC
1 GGTAATTCTAC
102120673 AACTTATCCA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:102124613 original size:68 final size:64
Alignment explanation
Indices: 102124492--102124676 Score: 185
Period size: 64 Copynumber: 2.8 Consensus size: 64
102124482 ACAGATAGTG
** * * * * *
102124492 TGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTA
1 TGTAGCTAGGTCACATGGGTGATACTGAGTGTACACCATATGTACAAGAGAGCTAC--GACA-TA
102124557 TGA
63 T-A
* **
102124560 TGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATATAG-ACAAGAGAGCTACGGGATAT
1 TGTAGCTAGGTCACATGGGTGATACTGA-GTGTACACCATAT-GTACAAGAGAGCTACGACATAT
102124623 A
64 A
* * *
102124624 TGTAGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 TGTAGCTAGGTCACATGGGTGATACTGAGTGTACACCATATGTACAAGAGAGC
102124677 CGAACTATAT
Statistics
Matches: 99, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
63 1 0.01
64 46 0.46
65 4 0.04
66 2 0.02
67 1 0.01
68 44 0.44
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (64 bp):
TGTAGCTAGGTCACATGGGTGATACTGAGTGTACACCATATGTACAAGAGAGCTACGACATATA
Found at i:102130158 original size:31 final size:31
Alignment explanation
Indices: 102130115--102130178 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
102130105 CCTTTTCATA
*
102130115 TTTCATAATTCATAACACTGGGCCTAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
102130146 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
102130177 TT
1 TT
102130179 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:102130421 original size:24 final size:24
Alignment explanation
Indices: 102130370--102130512 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
102130360 GCTTTATCAT
*
102130370 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
102130395 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102130419 ATAACTGGGGCATAATCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
102130442 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102130466 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
102130490 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102130513 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 22 0.20
24 75 0.69
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102130449 original size:47 final size:48
Alignment explanation
Indices: 102130370--102130511 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 48
102130360 GCTTTATCAT
* *
102130370 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
* **
102130419 ATAACTGGGGCATAATCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
102130466 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
102130512 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 43 0.51
48 31 0.36
49 11 0.13
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:102130470 original size:71 final size:72
Alignment explanation
Indices: 102130369--102130512 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
102130359 TGCTTTATCA
*
102130369 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
*
102130434 TCCCTTT
66 GCCCTTT
* * **
102130441 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
102130504 AGCCCTTT
65 AGCCCTTT
102130512 T
1 T
102130513 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:102130584 original size:9 final size:9
Alignment explanation
Indices: 102130570--102130626 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
102130560 ATCTCATGTG
102130570 CATATCATA
1 CATATCATA
*
102130579 CATATCATGTG
1 CATATCA--TA
102130590 CATATCATA
1 CATATCATA
* *
102130599 CATGTCATGTG
1 CATATCA--TA
102130610 CATATCATA
1 CATATCATA
102130619 CATATCAT
1 CATATCAT
102130627 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:102130586 original size:20 final size:20
Alignment explanation
Indices: 102130558--102130628 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
102130548 GCATTTATGA
*
102130558 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102130578 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
102130598 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102130618 ACATATCATGT
1 ACATATCATGT
102130629 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:102130593 original size:11 final size:11
Alignment explanation
Indices: 102130563--102130617 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
102130553 TATGAACATC
102130563 TCATGTGCATA
1 TCATGTGCATA
*
102130574 TCA--TACATA
1 TCATGTGCATA
102130583 TCATGTGCATA
1 TCATGTGCATA
* *
102130594 TCA--TACATG
1 TCATGTGCATA
102130603 TCATGTGCATA
1 TCATGTGCATA
102130614 TCAT
1 TCAT
102130618 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:102131958 original size:27 final size:27
Alignment explanation
Indices: 102131938--102132199 Score: 323
Period size: 27 Copynumber: 9.7 Consensus size: 27
102131928 AGGGTATTTT
*
102131938 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
102131965 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
102131992 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
102132019 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
102132046 GGCAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
102132073 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
102132100 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
102132127 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
102132154 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
102132181 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
102132200 AGTACTTTGG
Statistics
Matches: 205, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.01
27 200 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:102132024 original size:81 final size:81
Alignment explanation
Indices: 102131939--102132199 Score: 366
Period size: 81 Copynumber: 3.2 Consensus size: 81
102131929 GGGTATTTTA
* * * *
102131939 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
102132004 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
102132020 GTAATTCTGTAAATCGAGGGTAAAACGGCAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGT
*
102132084 AAATCGGGGGTAAAATG
65 AAATCGAGGGTAAAATG
* * * *
102132101 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
102132165 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
102132182 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
102132200 AGTACTTTGG
Statistics
Matches: 158, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
80 3 0.02
81 153 0.97
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:102135073 original size:30 final size:31
Alignment explanation
Indices: 102135037--102135099 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
102135027 CCTTTTCATA
102135037 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
102135067 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
102135098 TT
1 TT
102135100 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:102135341 original size:24 final size:24
Alignment explanation
Indices: 102135290--102135432 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
102135280 GCTTTATCAT
*
102135290 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
102135315 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
102135339 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
102135362 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
102135386 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
102135410 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102135433 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102135369 original size:47 final size:48
Alignment explanation
Indices: 102135290--102135432 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 48
102135280 GCTTTATCAT
* *
102135290 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
102135339 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
102135386 ATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
102135433 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.50
48 32 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:102135390 original size:71 final size:72
Alignment explanation
Indices: 102135289--102135432 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
102135279 TGCTTTATCA
* *
102135289 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
102135354 GCCCTTT
66 GCCCTTT
* * *
102135361 TATAACTGG-GGCATAAGCC-CTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATA
102135424 AGCCCTTT
65 AGCCCTTT
102135432 T
1 T
102135433 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
GCCCTTT
Found at i:102135504 original size:9 final size:9
Alignment explanation
Indices: 102135490--102135546 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
102135480 ATCTCATGTG
102135490 CATATCATA
1 CATATCATA
*
102135499 CATATCATGTG
1 CATATCA--TA
102135510 CATATCATA
1 CATATCATA
* *
102135519 CATGTCATGTG
1 CATATCA--TA
102135530 CATATCATA
1 CATATCATA
102135539 CATATCAT
1 CATATCAT
102135547 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:102135506 original size:20 final size:20
Alignment explanation
Indices: 102135478--102135548 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
102135468 GCATTTATGA
*
102135478 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102135498 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
102135518 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102135538 ACATATCATGT
1 ACATATCATGT
102135549 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:102135513 original size:11 final size:11
Alignment explanation
Indices: 102135483--102135537 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
102135473 TATGAACATC
102135483 TCATGTGCATA
1 TCATGTGCATA
*
102135494 TCA--TACATA
1 TCATGTGCATA
102135503 TCATGTGCATA
1 TCATGTGCATA
* *
102135514 TCA--TACATG
1 TCATGTGCATA
102135523 TCATGTGCATA
1 TCATGTGCATA
102135534 TCAT
1 TCAT
102135538 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:102136870 original size:27 final size:27
Alignment explanation
Indices: 102136851--102137083 Score: 227
Period size: 27 Copynumber: 8.6 Consensus size: 27
102136841 AAGGGTATTT
*
102136851 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* *
102136878 CAGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* *
102136905 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** * *
102136932 CGGCAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
* * *
102136959 -CGATAATTATGTAAATCGAGGGTAAAA
1 TAG-TAATTCTGTAAATCAAGGGTAAAA
* * * *
102136986 TGGTAATTATGTAAATTAGGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
** * *
102137013 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCAAGGGTAAAA
*
102137040 TAGTAATTCTGTAAACTGAA-GGTAAAA
1 TAGTAATTCTGTAAA-TCAAGGGTAAAA
**
102137067 CGGTAATTCTGTAAATC
1 TAGTAATTCTGTAAATC
102137084 GAGAGTACTT
Statistics
Matches: 173, Mismatches: 30, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 168 0.97
28 3 0.02
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCAAGGGTAAAA
Found at i:102136928 original size:81 final size:81
Alignment explanation
Indices: 102136853--102137086 Score: 312
Period size: 81 Copynumber: 2.9 Consensus size: 81
102136843 GGGTATTTTA
* * *
102136853 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGTA
102136918 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * *
102136934 GCAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGTAAATCGAGGGTAAAATGGTAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGT
*
102136998 AAAT-TAGGGGTAAAACG
65 AAATCGA-GGGTAAAACG
* * * *
102137015 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAA-GGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAATGGTAATTCTGT
102137079 AAATCGAG
65 AAATCGAG
102137087 AGTACTTTGG
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.02
81 125 0.95
82 4 0.03
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:102137101 original size:54 final size:53
Alignment explanation
Indices: 102136853--102137086 Score: 279
Period size: 54 Copynumber: 4.3 Consensus size: 53
102136843 GGGTATTTTA
* * ** * * *
102136853 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATGAA-GGTAAAACG
* * *
102136907 GTAATTCTGTAAATCGAGGGTAAAACGGCAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT-GAAGGTAAAACG
* * * * *
102136961 ATAATTATGTAAATCGAGGGTAAAATGGTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATGA-AGGTAAAACG
* *
102137015 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA-TGAAGGTAAAACG
102137069 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
102137087 AGTACTTTGG
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 151 0.97
55 3 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (53 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATGAAGGTAAAACG
Found at i:102143764 original size:44 final size:43
Alignment explanation
Indices: 102143710--102143866 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 43
102143700 TAAATTATCG
*
102143710 TGTAAGACCATGTCTGGGACATAGGCATCGAAT-TGAAATTTACA
1 TGTAAGACCATGTCCGGGACATAGGCATC-AATCTG-AATTTACA
* *
102143754 TGTAAGACCATGTCCGGGACATCGGCATCATATCT-AATTT-CG
1 TGTAAGACCATGTCCGGGACATAGGCATCA-ATCTGAATTTACA
* * * * *
102143796 TATAAGACCCTATCTGGGACAGAGGCATCAATACTGAA-TTACA
1 TGTAAGACCATGTCCGGGACATAGGCATCAAT-CTGAATTTACA
* * *
102143839 TGTAAGACCACGTCCGAGACATTGGCAT
1 TGTAAGACCATGTCCGGGACATAGGCAT
102143867 TATACCCATT
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.32
43 29 0.32
44 29 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
TGTAAGACCATGTCCGGGACATAGGCATCAATCTGAATTTACA
Found at i:102143860 original size:85 final size:88
Alignment explanation
Indices: 102143697--102143866 Score: 224
Period size: 85 Copynumber: 2.0 Consensus size: 88
102143687 GTTGGTATTA
* * *
102143697 ATCTAAATTATCGTGTAAGACCATGTCTGGGACATAGGCATCGAATTGAAATTTACATGTAAGAC
1 ATCTAAATTATCGTATAAGACCATATCTGGGACAGAGGCATCGAATTGAAATTTACATGTAAGAC
* *
102143762 CATGTCCGGGACATCGGCATCAT
66 CACGTCCGAGACATCGGCATCAT
*
102143785 ATCT-AATT-TCGTATAAGACCCTATCTGGGACAGAGGCATC-AATACTG-AA-TTACATGTAAG
1 ATCTAAATTATCGTATAAGACCATATCTGGGACAGAGGCATCGAAT--TGAAATTTACATGTAAG
*
102143845 ACCACGTCCGAGACATTGGCAT
64 ACCACGTCCGAGACATCGGCAT
102143867 TATACCCATT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
85 33 0.45
86 30 0.41
87 6 0.08
88 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (88 bp):
ATCTAAATTATCGTATAAGACCATATCTGGGACAGAGGCATCGAATTGAAATTTACATGTAAGAC
CACGTCCGAGACATCGGCATCAT
Found at i:102143866 original size:43 final size:43
Alignment explanation
Indices: 102143710--102143866 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
102143700 TAAATTATCG
* *
102143710 TGTAAGACCATGTCTGGGACATAGGCATCGAAT--TGAAATTTACA
1 TGTAAGACCACGTCCGGGACATAGGCATC-AATACTG-AA-TTACA
* * * *
102143754 TGTAAGACCATGTCCGGGACATCGGCATC-ATATCT-AATTTCG
1 TGTAAGACCACGTCCGGGACATAGGCATCAATA-CTGAATTACA
* * * *
102143796 TATAAGACC-CTATCTGGGACAGAGGCATCAATACTGAATTACA
1 TGTAAGACCAC-GTCCGGGACATAGGCATCAATACTGAATTACA
* *
102143839 TGTAAGACCACGTCCGAGACATTGGCAT
1 TGTAAGACCACGTCCGGGACATAGGCAT
102143867 TATACCCATT
Statistics
Matches: 88, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
42 29 0.33
43 30 0.34
44 28 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
TGTAAGACCACGTCCGGGACATAGGCATCAATACTGAATTACA
Found at i:102147270 original size:43 final size:43
Alignment explanation
Indices: 102147185--102147270 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
102147175 AGAGTTCATG
* * * **
102147185 AAGTTGACGCCCTCACTTTATTATCAGCTCAGGTATTGTCTAT
1 AAGTTGACGCCCTCACTTCACTATCAACTCAGGTATCATCTAT
*
102147228 AAGTTGACGCCCTCACTTCGCTATCAACTCAGGTATCATCTAT
1 AAGTTGACGCCCTCACTTCACTATCAACTCAGGTATCATCTAT
102147271 TTCCTCTATG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (43 bp):
AAGTTGACGCCCTCACTTCACTATCAACTCAGGTATCATCTAT
Found at i:102152580 original size:32 final size:32
Alignment explanation
Indices: 102152544--102152608 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
102152534 ACAAAAGAAC
*
102152544 TAGATCATCGAATATTACTCCTGAAAACTCGA
1 TAGATCATCGAAGATTACTCCTGAAAACTCGA
*
102152576 TAGATCGTCGAAGATTACTCCTGAAAACTCGA
1 TAGATCATCGAAGATTACTCCTGAAAACTCGA
102152608 T
1 T
102152609 TGTGATTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (32 bp):
TAGATCATCGAAGATTACTCCTGAAAACTCGA
Found at i:102155632 original size:40 final size:39
Alignment explanation
Indices: 102155549--102155740 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
102155539 TTGAATGATG
* * * * *
102155549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
*
102155589 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
102155629 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
102155668 CCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
102155709 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
102155741 CGTTATATCC
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
39 34 0.27
40 84 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:102155689 original size:79 final size:81
Alignment explanation
Indices: 102155549--102155740 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
102155539 TTGAATGATG
* * *
102155549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
102155613 CGTGCGAGTTAATA-AA
65 CGTACGAGTTAATATAA
* **
102155629 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
102155692 CGTACGAGTTACTATAA
65 CGTACGAGTTAATATAA
** *
102155709 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
102155741 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTACGAGTTAATATAA
Found at i:102155764 original size:79 final size:78
Alignment explanation
Indices: 102155549--102155766 Score: 208
Period size: 79 Copynumber: 2.7 Consensus size: 78
102155539 TTGAATGATG
* * *
102155549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGGA-TAA-ATTCCGAAGGCAT
*
102155612 TCGTGCGAGTTAATAAA
62 TCGTACGAGTTAATAAA
* * * * * * *
102155629 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGATAAATTCCGAAGGCATTCG
*
102155694 TACGAGTTACTATAA
65 TACGAGTTAATA-AA
** **
102155709 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGATAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGG
102155767 TACGTGATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
79 66 0.58
80 47 0.42
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGGCATTCGT
ACGAGTTAATAAA
Found at i:102161185 original size:40 final size:39
Alignment explanation
Indices: 102161141--102161287 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 39
102161131 ATAACCACAA
* * ** *
102161141 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-AAAACTC
102161181 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAAACTC
* *
102161220 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-AACTC
* * * *
102161260 GCATAAATGCCTTCGAGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
102161288 GTATCATTCA
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
39 37 0.39
40 57 0.61
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAAACTC
Found at i:102167028 original size:40 final size:39
Alignment explanation
Indices: 102166945--102167127 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 39
102166935 TTGAATGATG
* * * * *
102166945 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
*
102166985 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
102167025 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
102167064 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
**
102167105 -CCGGGCTTTGTCCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATT
102167128 TGAGCAAGTC
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:102167085 original size:79 final size:82
Alignment explanation
Indices: 102166945--102167129 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
102166935 TTGAATGATG
* *
102166945 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
102167009 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* * **
102167025 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
102167087 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
**
102167105 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
102167130 AGCAAGTCGT
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:102167160 original size:79 final size:78
Alignment explanation
Indices: 102166945--102167162 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
102166935 TTGAATGATG
102166945 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTG-CTATATCCGGA-TAA-ATTCCGAAGGCAT
102167008 TCGTGCGAGTTAATAAA
62 TCGTGCGAGTTAATAAA
* * * * * * *
102167025 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGCTATATCC-GGATAAATTCCGAAGGCATTC
*
102167089 GTGCGAGTTACTATAA
64 GTGCGAGTTAATA-AA
** * *
102167105 -CCGGGCTTTGTCCCGAAGGCATTTGAGCAAGTCGTTATATCCGGATAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-GCTATATCCGGATAAATTCCGAAGG
102167163 TACGTGATTC
Statistics
Matches: 112, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
79 66 0.59
80 46 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGCTATATCCGGATAAATTCCGAAGGCATTCGT
GCGAGTTAATAAA
Found at i:102170391 original size:40 final size:40
Alignment explanation
Indices: 102170359--102170484 Score: 200
Period size: 40 Copynumber: 3.1 Consensus size: 40
102170349 TCGTTCAAAC
* * *
102170359 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCGTAAAT
1 GCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCATAAAT
102170399 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
*
102170439 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
102170479 GCCTTC
1 GCCTTC
102170485 AGATCTTAGT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 79 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
Found at i:102170500 original size:40 final size:40
Alignment explanation
Indices: 102170354--102170539 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
102170344 GCTACTCGTT
* * * * *
102170354 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCG
1 CAAATGCCTTCGAGACTTAACCCGGATT-TAGTAACTCGCA
* *
102170394 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
* *
102170434 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
*** * * *
102170474 CAAATGCCTTC-AGATCTTAGTTCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGAGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
102170515 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGAGACTTAACCCGGA
102170540 CATCATTCGA
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 112 0.89
41 12 0.10
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
Found at i:102170500 original size:80 final size:81
Alignment explanation
Indices: 102170354--102170539 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 81
102170344 GCTACTCGTT
* ** *
102170354 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCGTAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
* *
102170418 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * ***
102170434 TAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAGTTC
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
*
102170497 GGATATAGTCACTTAGCA
64 GGATATAGTAACTTAGCA
102170515 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
102170540 CATCATTCGA
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 77 0.88
81 9 0.10
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:102176823 original size:79 final size:80
Alignment explanation
Indices: 102176671--102176826 Score: 226
Period size: 79 Copynumber: 1.9 Consensus size: 80
102176661 AATACCCCTA
* * * *
102176671 GTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAAT
1 GTTTATAAAATTACCAAAATACCCCTAGTTTA-AAAATTACCAAAATACCCCTGGATTGTAAAAT
102176736 TACTAAAATACCATTT
65 TACTAAAATACCATTT
**
102176752 GTTTATAAAATTACCAAAATACCCCTAGTTT-GTAATTACCAAAATACCCCTGGATTGTAAAATT
1 GTTTATAAAATTACCAAAATACCCCTAGTTTAAAAATTACCAAAATACCCCTGGATTGTAAAATT
102176816 A-TCAAAATACC
66 ACT-AAAATACC
102176827 CCTGATTTGT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 39 0.57
81 28 0.41
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (80 bp):
GTTTATAAAATTACCAAAATACCCCTAGTTTAAAAATTACCAAAATACCCCTGGATTGTAAAATT
ACTAAAATACCATTT
Found at i:102176830 original size:27 final size:27
Alignment explanation
Indices: 102176651--102176911 Score: 242
Period size: 27 Copynumber: 9.7 Consensus size: 27
102176641 TTAGTTTAGC
* *
102176651 AAATTTCCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
102176678 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
102176705 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
102176732 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
102176759 AAATTACCAAAATACCCCTAGTTTGT-
1 AAATTACCAAAATACCCCTGGTTTGTA
*
102176785 -AATTACCAAAATACCCCTGGATTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
102176811 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
102176838 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
102176865 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
102176892 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
102176912 ATATACAGAA
Statistics
Matches: 194, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
25 23 0.12
26 4 0.02
27 163 0.84
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:102176836 original size:106 final size:107
Alignment explanation
Indices: 102176651--102176853 Score: 309
Period size: 106 Copynumber: 1.9 Consensus size: 107
102176641 TTAGTTTAGC
* * *
102176651 AAATTTCCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCCCTGGATTACAAAATTACCAAA
*
102176716 ATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTTATA
65 ATACCCCTGATTTGTAAAATTACTAAAATACCATTTGTTTATA
** *
102176759 AAATTACCAAAATACCCCTAGTTTGT-AATTACCAAAATACCCCTGGATTGTAAAATTATCAAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAATTACCAAAATACCCCTGGATTACAAAATTACCAAAA
* *
102176823 TACCCCTGATTTGTGAAATTACTGAAATACC
66 TACCCCTGATTTGTAAAATTACTAAAATACC
102176854 CTCGACCTGT
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 61 0.71
108 25 0.29
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (107 bp):
AAATTACCAAAATACCCCTAGTTTGTAAATTACCAAAATACCCCTGGATTACAAAATTACCAAAA
TACCCCTGATTTGTAAAATTACTAAAATACCATTTGTTTATA
Found at i:102176865 original size:79 final size:79
Alignment explanation
Indices: 102176705--102176913 Score: 192
Period size: 79 Copynumber: 2.6 Consensus size: 79
102176695 TTGGTTTACA
* **
102176705 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTG-TTTATAAAATTACCAA
1 AAATTACCAAAATACCCCTGGATTGTAAAATTAC-AAAATACC-CCTGATTTATAAAATTACCAA
* **
102176769 AATACCCCTAGTTTGT
64 AATACCCCGAGCCTGT
* * **
102176785 -AATTACCAAAATACCCCTGGATTGTAAAATTATCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTGGATTGTAAAATTA-CAAAATACCCCTGATTTATAAAATTACCAAA
102176849 ATACCCTCGA-CCTGT
65 ATACCC-CGAGCCTGT
*** * *
102176864 AAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCTGAT
1 -AAATTACCAAAATACCCCTGGA-TTGTAAAATTA-CAAAATACCCCTGAT
102176914 ATACAGAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.02
79 61 0.57
80 9 0.08
81 35 0.33
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTGGATTGTAAAATTACAAAATACCCCTGATTTATAAAATTACCAAAA
TACCCCGAGCCTGT
Found at i:102176867 original size:106 final size:107
Alignment explanation
Indices: 102176651--102176924 Score: 286
Period size: 106 Copynumber: 2.6 Consensus size: 107
102176641 TTAGTTTAGC
* * *
102176651 AAATTTCCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCCCTGGATTACAAAATTACCAAA
* * * **
102176716 ATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTTATA
65 ATACCCCTGATTTGTAAAATTACTAAAATACCACTCGCCTATA
** *
102176759 AAATTACCAAAATACCCCTAGTTTGT-AATTACCAAAATACCCCTGGATTGTAAAATTATCAAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAATTACCAAAATACCCCTGGATTACAAAATTACCAAAA
* * *
102176823 TACCCCTGATTTGTGAAATTACTGAAATACC-CTCGACCTGTA
66 TACCCCTGATTTGTAAAATTACTAAAATACCACTCG-CCTATA
*** * * * *
102176865 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCT-GATATACAGAATTA
1 AAATTACCAAAATACCCCTAG-TTTGT-AAATTACCAAAATACCCCTGGAT-TACAAAATTA
102176925 TCGTTTTACC
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
105 7 0.05
106 79 0.57
107 3 0.02
108 49 0.36
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (107 bp):
AAATTACCAAAATACCCCTAGTTTGTAAATTACCAAAATACCCCTGGATTACAAAATTACCAAAA
TACCCCTGATTTGTAAAATTACTAAAATACCACTCGCCTATA
Found at i:102176961 original size:27 final size:27
Alignment explanation
Indices: 102176651--102176963 Score: 149
Period size: 27 Copynumber: 11.7 Consensus size: 27
102176641 TTAGTTTAGC
* * *
102176651 AAATTTCCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
102176678 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
102176705 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
102176732 AAATTACTAAAATACCATTTG-TTTATA
1 AAATTACCAAAATACC-CTCGATTTATA
* *
102176759 AAATTACCAAAATACCC-CTAGTTTGT-
1 AAATTACCAAAATACCCTCGA-TTTATA
* *
102176785 -AATTACCAAAATACCCCTGGA-TTGTA
1 AAATTACCAAAATA-CCCTCGATTTATA
* * *
102176811 AAATTATCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTATA
** ** *
102176838 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*** * *
102176865 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
102176892 AAATTACCAAAGTACCC-CTGATATACA
1 AAATTACCAAAATACCCTC-GATTTATA
* * **** *
102176919 GAATTATCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
102176946 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
102176964 TGTTGGGTAG
Statistics
Matches: 220, Mismatches: 51, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
25 17 0.08
26 9 0.04
27 191 0.87
28 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:102176983 original size:27 final size:27
Alignment explanation
Indices: 102176947--102177330 Score: 520
Period size: 27 Copynumber: 14.3 Consensus size: 27
102176937 CGATTTACAA
* *
102176947 AATTACCGAAATACCCTTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
102176974 AAATATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102177001 AAATACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
102177028 AATTATCGCAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
102177055 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102177082 AATTACC-AGAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
102177109 AATTACCGAAATACCCCTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
102177136 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
102177163 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102177190 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
102177217 AATTACTAAAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102177244 -ATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102177270 AAATACCGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
102177297 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
102177324 AATTACC
1 AATTACC
102177331 ATTTTGCCCC
Statistics
Matches: 315, Mismatches: 39, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
26 23 0.07
27 291 0.92
28 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:102177628 original size:26 final size:27
Alignment explanation
Indices: 102177599--102177658 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
102177589 CCACATATAT
*
102177599 ATATCTGT-TCTGGTAGAC-TAGCCACA
1 ATATCTGTAGCTGGT-GACTTAGCCACA
* *
102177625 ATATCTGTAGCTGGTGACTTCGTCACA
1 ATATCTGTAGCTGGTGACTTAGCCACA
102177652 ATATCTG
1 ATATCTG
102177659 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
ATATCTGTAGCTGGTGACTTAGCCACA
Found at i:102177786 original size:6 final size:6
Alignment explanation
Indices: 102177777--102177858 Score: 80
Period size: 6 Copynumber: 13.3 Consensus size: 6
102177767 TTGCATTCAC
*
102177777 ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
*
102177827 ATTCTG ATTCTG GTTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
102177859 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
5 5 0.08
6 49 0.77
7 6 0.09
8 4 0.06
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:102177812 original size:31 final size:25
Alignment explanation
Indices: 102177777--102177844 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
102177767 TTGCATTCAC
102177777 ATTCTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
102177802 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
102177827 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
102177845 ATTCTAGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:102179839 original size:27 final size:27
Alignment explanation
Indices: 102179808--102180070 Score: 249
Period size: 27 Copynumber: 9.7 Consensus size: 27
102179798 TTAGTTTACC
*
102179808 AAATTACCAAAATACCCCTGGTATGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
102179835 AAATTACCAAAATGCCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
102179862 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * ** *
102179889 AAATTTCTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
102179916 AAATTACAAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
102179943 AAGTTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
102179970 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * ***
102179997 AAATTATTAAAATACCCCCGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
102180024 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* *
102180051 AATTTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
102180071 ATTTATAGAA
Statistics
Matches: 197, Mismatches: 37, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
26 3 0.02
27 190 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:102180143 original size:27 final size:27
Alignment explanation
Indices: 102180113--102180516 Score: 438
Period size: 27 Copynumber: 15.0 Consensus size: 27
102180103 CAAAATTATC
* ** *
102180113 GAAATACCCTTGTACAGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
102180140 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
102180167 GGAATACCCCTATAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
102180193 CGCAATACCCCTGTATGGTAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
102180221 GAAATATCCCTATAGGGTAGAATTAC-
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
102180247 CAGAATACCCTTGTAGGGTAGAATTACC
1 GA-AATACCCCTGTAGGGTAGAATTACT
*
102180275 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
102180302 GAAATACCCCTGTAGGGTAGAATTAGC-
1 GAAATACCCCTGTAGGGTAGAATTA-CT
*
102180329 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
102180356 GAAATACCCCTATAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
102180382 CAAAATACCCTTGTAGGGTAGAATAATT
1 -GAAATACCCCTGTAGGGTAGAATTACT
*
102180410 GAAATACCCCTGTTGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
102180437 GAAATACCCTTGTAGGGTAAAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
102180464 GAAATAACCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
102180491 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
102180517 CATTTTGCCC
Statistics
Matches: 320, Mismatches: 49, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 315 0.98
28 3 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:102180786 original size:2 final size:2
Alignment explanation
Indices: 102180779--102180819 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
102180769 GCTTCGCCAC
102180779 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102180820 AAATATGTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102181009 original size:6 final size:6
Alignment explanation
Indices: 102180998--102181122 Score: 96
Period size: 6 Copynumber: 20.3 Consensus size: 6
102180988 TTGCTTTCAC
** * *
102180998 ATTCTG ATTCTG ATTCTG -TTACCCA ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
102181048 ATTTTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
*
102181097 ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
102181123 AATGTTTCTT
Statistics
Matches: 95, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
5 7 0.07
6 76 0.80
7 7 0.07
8 5 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:102181029 original size:25 final size:25
Alignment explanation
Indices: 102181001--102181065 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
102180991 CTTTCACATT
102181001 CTGATTCTGATTCTGTTACCCAATA
1 CTGATTCTGATTCTGTTACCCAATA
* *
102181026 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCCAATA
* *
102181051 TTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
102181066 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCCAATA
Found at i:102181033 original size:31 final size:31
Alignment explanation
Indices: 102180998--102181107 Score: 118
Period size: 31 Copynumber: 3.5 Consensus size: 31
102180988 TTGCTTTCAC
** *
102180998 ATTCTGATTCTGATTCTGTTACCCAATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
102181029 ATTCTGATTCTG-TTACCTAATT--TTGATTCTG
1 ATTCTGATTCTGATT--CT-GTTACCTGATTCTG
*
102181060 GTTCTGATTCTGATTCTGTTACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
102181091 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
102181108 AATTCTAGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 52 0.81
32 4 0.06
33 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:102181057 original size:19 final size:19
Alignment explanation
Indices: 102181026--102181113 Score: 103
Period size: 19 Copynumber: 4.7 Consensus size: 19
102181016 TTACCCAATA
102181026 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
* *
102181045 CTAATTTTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
102181063 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
102181082 CTGATTCTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
*
102181100 CTGATTCTAATTCT
1 CTGATTCTGATTCT
102181114 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.05
18 25 0.42
19 27 0.45
20 5 0.08
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Done.