Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 334 of 770
Found at i:102181067 original size:37 final size:37
Alignment explanation
Indices: 102181026--102181113 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
102181016 TTACCCAATA
* *
102181026 CTGATTCTGATTCTGTTACCTAATTTTGATTCTGGTT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
*
102181063 CTGATTCTGATTCTGTTACCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
*
102181100 CTGATTCTAATTCT
1 CTGATTCTGATTCT
102181114 AGTTCTGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
Found at i:102183078 original size:27 final size:27
Alignment explanation
Indices: 102183046--102183208 Score: 200
Period size: 27 Copynumber: 6.0 Consensus size: 27
102183036 TAGAATATTT
** *
102183046 TAGTTTACCAAATTACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
102183073 TGGTTTACAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * *
102183100 CAGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
102183127 TTGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
102183154 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* **
102183181 TAGTTTGTAAAATTATTAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
102183208 T
1 T
102183209 GATTTGTGAA
Statistics
Matches: 118, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.32
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:102183133 original size:54 final size:54
Alignment explanation
Indices: 102183055--102183207 Score: 225
Period size: 54 Copynumber: 2.8 Consensus size: 54
102183045 TTAGTTTACC
* *
102183055 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCCAGTTTGTA
* * *
102183109 AAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCCAGTTTGTA
* * **
102183163 AAATTACCAAAATACCCCTAGTTTGTAAAATTATTAAAATACCCC
1 AAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCC
102183208 TGATTTGTGA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCCAGTTTGTA
Found at i:102183186 original size:81 final size:81
Alignment explanation
Indices: 102183055--102183206 Score: 250
Period size: 81 Copynumber: 1.9 Consensus size: 81
102183045 TTAGTTTACC
* *
102183055 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAA
102183120 ATACCCTTTGTTTATA
66 ATACCCTTTGTTTATA
** * *
102183136 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATTAAA
1 AAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAA
102183201 ATACCC
66 ATACCC
102183207 CTGATTTGTG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAA
ATACCCTTTGTTTATA
Found at i:102183214 original size:27 final size:27
Alignment explanation
Indices: 102183055--102183292 Score: 191
Period size: 27 Copynumber: 8.8 Consensus size: 27
102183045 TTAGTTTACC
* * **
102183055 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
102183082 AAATTACCAAAATACCCC-CAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * *
102183109 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
102183136 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
102183163 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
** *
102183190 AAATTATTAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** **
102183217 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
102183244 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
102183271 AAATTACCAAAGTACCCCTGAT
1 AAATTACCAAAATACCCCTGAT
102183293 ATACAAAATT
Statistics
Matches: 178, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.03
27 168 0.94
28 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:102183257 original size:81 final size:81
Alignment explanation
Indices: 102183081--102183303 Score: 218
Period size: 81 Copynumber: 2.8 Consensus size: 81
102183071 CTTGGTTTAC
* *
102183081 AAAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAAATACCCTTTG-TTTATAAAATTACCA
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCC-CTGATTTATAAAATTACCA
* **
102183145 AAATACCCCTAGTTTGT
65 AAATACCCCGAGCCTGT
* * * ***
102183162 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATTAAAATACCCCTGATTTGTGAAATTATTGA
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGATTTATAAAATTACCAA
102183227 AATACCCTCGA-CCTGT
66 AATACCC-CGAGCCTGT
*** * * * * * *
102183243 AAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCTGATATACAAAATTA
1 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAAAATACCCCTGATTTATAAAATTA
102183304 TCGTTTTACC
Statistics
Matches: 116, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
80 7 0.06
81 107 0.92
82 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGATTTATAAAATTACCAA
AATACCCCGAGCCTGT
Found at i:102183363 original size:27 final size:27
Alignment explanation
Indices: 102183326--102183845 Score: 646
Period size: 27 Copynumber: 19.3 Consensus size: 27
102183316 CGATTTACAA
* *
102183326 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183353 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183380 AAATT-TCGAAATACCCCTGTCGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
* * *
102183407 AATTATCGCAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183434 AATTACCGAAATACCCCTGGAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183461 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183488 AATTGCCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102183515 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183542 AATTACCTAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102183569 AATTACCGAAATACCCCTATAGGCTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
102183596 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102183623 AATTAGCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
102183650 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102183677 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
102183704 AATTATCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
102183731 AATAATTGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
102183758 AATTACTGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
102183785 AAATACTGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
102183812 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
102183839 AATTACC
1 AATTACC
102183846 ATTTTGCCCC
Statistics
Matches: 428, Mismatches: 63, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.01
27 421 0.98
28 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:102184323 original size:19 final size:19
Alignment explanation
Indices: 102184301--102184393 Score: 73
Period size: 19 Copynumber: 4.6 Consensus size: 19
102184291 CATTCACATT
*
102184301 CTGATTTTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
102184320 CTGATACTGATTCTGATTCTGTTAC
1 CTGATTCTGA---T--T-CTGTTAC
*
102184345 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
102184363 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
102184382 TTGATTCTGATT
1 CTGATTCTGATT
102184394 TTGATTCTAG
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
17 3 0.05
18 13 0.22
19 21 0.36
20 4 0.07
22 2 0.03
24 1 0.02
25 15 0.25
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:102184329 original size:25 final size:25
Alignment explanation
Indices: 102184301--102184365 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
102184291 CATTCACATT
* *
102184301 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
102184326 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
102184351 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
102184366 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:102184333 original size:31 final size:31
Alignment explanation
Indices: 102184298--102184401 Score: 89
Period size: 31 Copynumber: 3.5 Consensus size: 31
102184288 TTGCATTCAC
102184298 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
102184329 ATTC------TGATTCTGTTACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * *
102184354 ATTCTGGTTCTGATTCTGATT--CTGTTACTTG
1 ATTCTGATTTTGATTCTG-TTACCTGATAC-TG
102184385 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
102184402 AGTTCTGATA
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
25 23 0.40
30 4 0.07
31 29 0.50
32 2 0.03
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:102184337 original size:6 final size:6
Alignment explanation
Indices: 102184298--102184410 Score: 90
Period size: 6 Copynumber: 18.3 Consensus size: 6
102184288 TTGCATTCAC
* * *
102184298 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
102184348 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACTTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG
102184397 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
102184411 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.76
7 9 0.10
8 5 0.06
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:102184367 original size:37 final size:37
Alignment explanation
Indices: 102184320--102184410 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 37
102184310 ATTCTGTTAC
*
102184320 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
* * *
102184357 CTGGTTCTGATTCTGATTCTGTTACTTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
*
102184394 TTGATTCT-AGTTCTGAT
1 CTGATTCTGA-TTCTGAT
102184411 AATGTTTCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 1 0.02
37 46 0.98
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
Found at i:102186387 original size:27 final size:27
Alignment explanation
Indices: 102186357--102186616 Score: 245
Period size: 27 Copynumber: 9.6 Consensus size: 27
102186347 ATACTTTAGT
*
102186357 TTACCAAAATACCCCTGGTTTATAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* **
102186384 TTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* *
102186411 TTACCAAAATACCCTTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * ** *
102186438 TTACTAAAATACCCTTTATTTATAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
102186465 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
102186492 TTACCAAAATACCACTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
102186519 TTATCAAAATACCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
** ***
102186546 TTACTGAAATA-CCCTCGACCTGTAAAA
1 TTACCAAAATACCCCT-GGTTTGTAAAA
*** **
102186573 TTATTGAAATA-CCCTCGACTTGTAAAA
1 TTACCAAAATACCCCT-GGTTTGTAAAA
*
102186600 TTACCAAAGTACCCCTG
1 TTACCAAAATACCCCTG
102186617 ATTTATAGAA
Statistics
Matches: 199, Mismatches: 32, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 4 0.02
27 191 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCCTGGTTTGTAAAA
Found at i:102186684 original size:27 final size:27
Alignment explanation
Indices: 102186651--102187087 Score: 549
Period size: 27 Copynumber: 16.3 Consensus size: 27
102186641 CGATTTACAA
*
102186651 AATTACCGAAACACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
102186678 AAATACCGAAATACCC-TGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
102186704 AAATACCG-AATACCAC-TGTAGGGTAG
1 AATTACCGAAATACC-CTTGTAGGGTAG
* * * *
102186730 AATTATCGCAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* **
102186757 AATTACCGAAGTACCCCAGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102186784 AATTATCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102186811 AATTATCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
102186838 AATTAACGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
102186865 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102186892 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102186919 AATTACCGAAATACCCCTGTAGGCTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102186946 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102186973 AATTATCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102187000 AATTACCGAAATA-TCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
102187026 AATTACTGAAATACCCCATGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* * * *
102187054 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
102187081 AATTACC
1 AATTACC
102187088 ATTTTGCCCC
Statistics
Matches: 364, Mismatches: 41, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
25 6 0.02
26 58 0.16
27 280 0.77
28 20 0.05
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:102188777 original size:40 final size:40
Alignment explanation
Indices: 102188669--102188878 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
102188659 CGGGATTTAA
* * * * *
102188669 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
102188709 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102188749 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102188789 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102188829 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102188869 CCGGATATAT
1 CCGGATATAT
102188879 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102201373 original size:40 final size:39
Alignment explanation
Indices: 102201328--102201457 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
102201318 CGGAATATAA
102201328 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
102201368 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
102201408 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
102201448 CCGGATATAA
1 CCGGATATAA
102201458 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:102201472 original size:40 final size:40
Alignment explanation
Indices: 102201344--102201495 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
102201334 ATAACCATGT
* * *
102201344 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
102201384 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
102201424 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
102201464 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
102201496 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:102201478 original size:80 final size:80
Alignment explanation
Indices: 102201344--102201493 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
102201334 ATAACCATGT
*
102201344 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
102201408 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
102201424 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
102201487 CCCGGAT
64 CCCGGAT
102201494 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:102212661 original size:38 final size:38
Alignment explanation
Indices: 102212610--102212688 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
102212600 ATCTATCACA
102212610 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
1 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
102212648 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
1 CATGATATTTCATTATGCCAAATCAAATATACAAATTT
102212686 CAT
1 CAT
102212689 ATTTAAAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (38 bp):
CATGATATTTCATTATGCCAAATCAAATATACAAATTT
Found at i:102213328 original size:15 final size:15
Alignment explanation
Indices: 102213308--102213339 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
102213298 ATTTAATAAC
102213308 CACAAGTTTTATGCA
1 CACAAGTTTTATGCA
102213323 CACAAGTTTTATGCA
1 CACAAGTTTTATGCA
102213338 CA
1 CA
102213340 TACTTGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (15 bp):
CACAAGTTTTATGCA
Found at i:102224113 original size:16 final size:16
Alignment explanation
Indices: 102224094--102224124 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102224084 CTTCTTCACT
102224094 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
102224110 TACTTACTTACTTAA
1 TACTCACTTACTTAA
102224125 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:102224130 original size:20 final size:20
Alignment explanation
Indices: 102224091--102224130 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
102224081 AAACTTCTTC
* *
102224091 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
102224111 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
102224131 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:102224505 original size:55 final size:53
Alignment explanation
Indices: 102224315--102224569 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
102224305 ACGCGGGTAC
* * * * *
102224315 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
102224364 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
102224417 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * *
102224472 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
102224525 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
102224570 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 73 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:102224506 original size:108 final size:110
Alignment explanation
Indices: 102224362--102224562 Score: 334
Period size: 108 Copynumber: 1.8 Consensus size: 110
102224352 ATCCTTTTGA
* * *
102224362 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAAACCTCACCAAT
102224425 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
102224470 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAAACCTCACCAAT
102224535 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
102224563 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
108 50 0.59
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:102226594 original size:20 final size:20
Alignment explanation
Indices: 102226569--102226610 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
102226559 ATAGCTAGAC
*
102226569 TCTGATACACGTTATGTTAG
1 TCTGATACACATTATGTTAG
102226589 TCTGATACACATTATGTTAG
1 TCTGATACACATTATGTTAG
102226609 TC
1 TC
102226611 CAAGAATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (20 bp):
TCTGATACACATTATGTTAG
Found at i:102228084 original size:33 final size:34
Alignment explanation
Indices: 102228042--102228106 Score: 123
Period size: 33 Copynumber: 1.9 Consensus size: 34
102228032 ATCATTTCAC
102228042 GAATTTAATAATCACAAG-TTTATGCACATACAT
1 GAATTTAATAATCACAAGTTTTATGCACATACAT
102228075 GAATTTAATAATCACAAGTTTTATGCACATAC
1 GAATTTAATAATCACAAGTTTTATGCACATAC
102228107 TTGTACAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 18 0.58
34 13 0.42
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (34 bp):
GAATTTAATAATCACAAGTTTTATGCACATACAT
Found at i:102235146 original size:38 final size:39
Alignment explanation
Indices: 102235094--102235270 Score: 245
Period size: 39 Copynumber: 4.6 Consensus size: 39
102235084 TATTCGAATG
102235094 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACT
*
102235133 ATAT-CGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACT
* *
102235171 ATATCCGGGCTAAGTCCCAAGGCTTTTGTGCTATT-ACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACT
* *
102235209 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTA-TTGACT
*
102235249 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGT-CCGAAGG
102235271 TACTTGGGTT
Statistics
Matches: 123, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 54 0.44
39 59 0.48
40 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACT
Found at i:102235193 original size:39 final size:39
Alignment explanation
Indices: 102235094--102235270 Score: 227
Period size: 38 Copynumber: 4.6 Consensus size: 39
102235084 TATTCGAATG
* *
102235094 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTGACT
*
102235133 ATAT-CGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTGACT
* *
102235171 ATATCCGGGCTAAGTCCCAAGGCTTTTGTGCTA-TTACT
1 ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTGACT
* *
102235209 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAG-TGACT
*
102235249 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCC-AAGG
102235271 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
38 58 0.47
39 57 0.46
40 8 0.06
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTGACT
Found at i:102235221 original size:77 final size:78
Alignment explanation
Indices: 102235094--102235270 Score: 254
Period size: 77 Copynumber: 2.3 Consensus size: 78
102235084 TATTCGAATG
* *
102235094 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTATTGACTATATCGGGCTAAG-TCCGAAGGCATT
1 ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTATTGACTATATCGGGCTAAGACCCGAAGGCATT
*
102235158 TGTGCTAG-TGACT
66 TGTGCGAGTTG-CT
*
102235171 ATATCCGGGCTAAGTCCCAAGGCTTTTGTGCTATT-ACTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTATTGACTATAT-CGGGCTAAGACCCGAAGGCAT
102235235 TTGTGCGAGTTGCT
65 TTGTGCGAGTTGCT
*
102235249 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCC-AAGG
102235271 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
76 7 0.08
77 52 0.57
78 30 0.33
79 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (78 bp):
ATATCCGGGCTAAGTCCCAAGGCATTTGTGCTATTGACTATATCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGCT
Found at i:102246599 original size:125 final size:129
Alignment explanation
Indices: 102246407--102246641 Score: 320
Period size: 125 Copynumber: 1.8 Consensus size: 129
102246397 AAAATAAAAT
*
102246407 AAACTAATCCTAATTCTATACTAAATTGATAAAAATTAATATATAAATTATAATAGATATAATTA
1 AAACTAAT-CTAACTCTATACTAAATTGATAAAAATTAATATAT-AATTATAATAGATATAATTA
*
102246472 TATATTAA-AGATTATCATC-TTCTTATTAAA-AAAAAAATTTATCACATAAAATATGATTAAAT
64 TATATTAATA-ATTATAATCTTTCTTATTAAACAAAAAAATTTATCACATAAAATATGATTAAAT
102246534 TA
128 TA
* * *
102246536 AAACTAAT-TAACTCTATA-TAAAATTGATAATAATTAATATAT-ATTATGATGGATATAATTAT
1 AAACTAATCTAACTCTATACT-AAATTGATAAAAATTAATATATAATTATAATAGATATAATTAT
* *
102246598 ATATTAATAATTATAATCTTTTTTATTAAACTAAAAACATTTAT
65 ATATTAATAATTATAATCTTTCTTATTAAAC-AAAAAAATTTAT
102246642 TCTAGAAGCC
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
125 33 0.35
126 12 0.13
127 30 0.32
128 11 0.12
129 8 0.09
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.40
Consensus pattern (129 bp):
AAACTAATCTAACTCTATACTAAATTGATAAAAATTAATATATAATTATAATAGATATAATTATA
TATTAATAATTATAATCTTTCTTATTAAACAAAAAAATTTATCACATAAAATATGATTAAATTA
Found at i:102246718 original size:29 final size:30
Alignment explanation
Indices: 102246661--102246718 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
102246651 CTTTTGAAAA
* * **
102246661 TATTTACAAAAAGAGGCATCTATTTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
102246691 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
102246719 AAAATACTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:102262591 original size:30 final size:30
Alignment explanation
Indices: 102262536--102262666 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
102262526 ATAGTGAATC
*
102262536 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
102262565 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
102262595 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
102262623 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
102262653 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102262667 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:102262646 original size:58 final size:58
Alignment explanation
Indices: 102262535--102262666 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
102262525 TATAGTGAAT
* * * * *
102262535 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
102262594 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
102262652 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
102262667 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:102270543 original size:30 final size:30
Alignment explanation
Indices: 102270488--102270618 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
102270478 ATAGTGAATC
*
102270488 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
102270517 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
102270547 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
102270575 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
102270605 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102270619 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:102270598 original size:58 final size:58
Alignment explanation
Indices: 102270487--102270618 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
102270477 TATAGTGAAT
* * * * *
102270487 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
102270546 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
102270604 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
102270619 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:102273539 original size:17 final size:17
Alignment explanation
Indices: 102273517--102273551 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
102273507 TGCATGTGAT
102273517 TTGGGCCTAATGGGCCA
1 TTGGGCCTAATGGGCCA
*
102273534 TTGGGCCTGATGGGCCA
1 TTGGGCCTAATGGGCCA
102273551 T
1 T
102273552 ATGAATGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.23, G:0.37, T:0.26
Consensus pattern (17 bp):
TTGGGCCTAATGGGCCA
Found at i:102273585 original size:29 final size:29
Alignment explanation
Indices: 102273537--102273611 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
102273527 TGGGCCATTG
102273537 GGCCTGATGGGCCATATGAATGTGAATTA
1 GGCCTGATGGGCCATATGAATGTGAATTA
* * * *
102273566 GGCTTGATGGGCCATGTGAATGTGGATTG
1 GGCCTGATGGGCCATATGAATGTGAATTA
102273595 GGCCTGATGGGCCATAT
1 GGCCTGATGGGCCATAT
102273612 AAATAAGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (29 bp):
GGCCTGATGGGCCATATGAATGTGAATTA
Found at i:102274697 original size:17 final size:18
Alignment explanation
Indices: 102274664--102274698 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
102274654 TTTTAAGAAG
102274664 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
102274682 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
102274699 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:102279301 original size:40 final size:40
Alignment explanation
Indices: 102279159--102279294 Score: 227
Period size: 40 Copynumber: 3.4 Consensus size: 40
102279149 ATAGCAATTC
* * * *
102279159 GCACGAATGCCTTCGGGACTTAGCTCGGACATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
*
102279199 GCACAAATGCCTTCGAGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
102279239 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
102279279 GCACAAATGCCTTCGG
1 GCACAAATGCCTTCGG
102279295 ATCTTAGTCC
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAATCACTA
Found at i:102282051 original size:40 final size:40
Alignment explanation
Indices: 102281949--102282162 Score: 292
Period size: 40 Copynumber: 5.4 Consensus size: 40
102281939 GATGATAACC
* *
102281949 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
102281989 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
102282028 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
102282068 GGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAACTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
102282108 GGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
102282147 GGCTAAATTCCGAAGG
1 GGCTAAGTCCCGAAGG
102282163 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 51 0.32
40 108 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:102282114 original size:80 final size:80
Alignment explanation
Indices: 102281943--102282168 Score: 300
Period size: 79 Copynumber: 2.9 Consensus size: 80
102281933 TATTCGGATG
* *
102281943 ATAACC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
*
102282005 ATTTGTGCGAGTTACT
65 ACTTGTGCGAGTTACT
* * *
102282021 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
102282086 CTTGTGCGAGTTACT
66 CTTGTGCGAGTTACT
* * * * *
102282101 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
102282164 ACTTG
65 ACTTG
102282169 GTTTGGGAAT
Statistics
Matches: 131, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
78 5 0.04
79 63 0.48
80 63 0.48
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
CTTGTGCGAGTTACT
Found at i:102291043 original size:40 final size:40
Alignment explanation
Indices: 102290984--102291151 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 40
102290974 CGGGACTTTA
* * *
102290984 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
102291024 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
102291064 -CCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
102291103 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
102291143 CCCGGATAT
1 CCCGGATAT
102291152 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 33 0.32
40 65 0.62
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:102298162 original size:40 final size:40
Alignment explanation
Indices: 102298103--102298310 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
102298093 CAATTGAATG
* * * *
102298103 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
102298143 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
102298183 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
102298223 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
102298263 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
102298303 ATATCCGG
1 ATATCCGG
102298311 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:102298241 original size:80 final size:80
Alignment explanation
Indices: 102298105--102298310 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
102298095 ATTGAATGAT
* * ** * * *
102298105 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
102298169 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
102298185 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
102298250 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
102298265 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
102298311 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:102302014 original size:40 final size:40
Alignment explanation
Indices: 102301955--102302160 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
102301945 CAATTGAATG
* * * *
102301955 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
102301995 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGA--
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
** * **
102302033 CCATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
102302073 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
102302113 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
102302153 ATATCCGG
1 ATATCCGG
102302161 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
37 2 0.01
38 28 0.20
40 106 0.77
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:102302091 original size:78 final size:80
Alignment explanation
Indices: 102301957--102302160 Score: 243
Period size: 78 Copynumber: 2.6 Consensus size: 80
102301947 ATTGAATGAT
* * ** * * *
102301957 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
102302021 TTGTGCTAGT-G-ACC
65 TTGTGCAAGTCGTACC
* * *
102302035 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
* *
102302100 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGTACC
* *
102302115 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
102302161 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 2 0.02
78 60 0.56
79 1 0.01
80 44 0.41
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGTACC
Found at i:102309729 original size:40 final size:39
Alignment explanation
Indices: 102309656--102309863 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 39
102309646 CAATTGAATG
* * * * *
102309656 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAGTT
* * **
102309696 ATATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGTGACCT
1 ATATCCGGGCTAAGACCCGAAGG-CATTGTGCAAGT-AGTT
*
102309737 -CATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGCT-GTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAG-TAGTT
* * * *
102309776 AAATCCGGGCTAATACCCAAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAGTT
* * *
102309816 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGTT
102309856 ATATCCGG
1 ATATCCGG
102309864 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
39 8 0.06
40 124 0.89
41 7 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGTT
Found at i:102309862 original size:80 final size:78
Alignment explanation
Indices: 102309657--102309863 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 78
102309647 AATTGAATGA
* * ** * * *
102309657 TATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATTATATCCGGGTTAAGACCCGAAGGCC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GT-GTTATATCCGGGCTAAGACCCAAAGGCC
*
102309721 ATTGTGCTAGTGACC
64 ATTGTGCAAGTGACC
* * *
102309736 TCATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGCTGTTAAATCCGGGCTAATACCCAAAGG-C
1 T-ATCCGGGCTAAGACCCGAAGGCATTCGTGCATG-TGTTATATCCGGGCTAAGACCCAAAGGCC
**
102309800 ATTTGTGCAAGTCGTTC
64 A-TTGTGCAAGT-GACC
102309817 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGT-GTTATATCCGG
102309864 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
79 4 0.04
80 99 0.93
81 4 0.04
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGTTATATCCGGGCTAAGACCCAAAGGCCAT
TGTGCAAGTGACC
Found at i:102317471 original size:40 final size:40
Alignment explanation
Indices: 102317363--102317532 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
102317353 CGGGATTTAA
* * * * *
102317363 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
102317403 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102317443 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102317483 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102317523 CCGGATATAT
1 CCGGATATAT
102317533 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102325568 original size:40 final size:40
Alignment explanation
Indices: 102325460--102325629 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
102325450 CGGGATTTAA
* * * * *
102325460 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
102325500 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102325540 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102325580 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102325620 CCGGATATAT
1 CCGGATATAT
102325630 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102331834 original size:37 final size:37
Alignment explanation
Indices: 102331784--102331861 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
102331774 TATAAAAGAA
102331784 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
102331821 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
102331858 GTCT
1 GTCT
102331862 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:102332024 original size:49 final size:49
Alignment explanation
Indices: 102331964--102332086 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
102331954 CATATATTTT
*
102331964 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
102332013 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
102332062 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
102332087 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:102335230 original size:40 final size:41
Alignment explanation
Indices: 102335186--102335284 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
102335176 TCGATTGTTC
* * **
102335186 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
102335226 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
102335267 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
102335285 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:102335805 original size:29 final size:29
Alignment explanation
Indices: 102335768--102336074 Score: 469
Period size: 29 Copynumber: 10.7 Consensus size: 29
102335758 TGTTGAAAAA
* *
102335768 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
102335797 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
102335826 TTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
102335855 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
102335884 CT--CACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
102335911 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
102335940 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
102335969 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
102335998 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
102336027 CTCGCACACATAGTG-CTCGGTTAACGGAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
102336057 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
102336075 TAATCATTCG
Statistics
Matches: 262, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
27 27 0.10
28 6 0.02
29 224 0.85
30 5 0.02
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:102335906 original size:114 final size:115
Alignment explanation
Indices: 102335773--102336042 Score: 470
Period size: 114 Copynumber: 2.3 Consensus size: 115
102335763 AAAAACTCGT
* * *
102335773 ACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCAATTACTGATTTCGCACACATA
1 ACACACAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCACACACA
102335838 GTGCCTCGATTACTGATCTCGCACACACAGTGCCTCGATTACTGATCT-C
66 GTGCCTCGATTACTGATCTCGCACACACAGTGCCTCGATTACTGATCTCC
* *
102335887 ACACACAGTGCCTCGATTACTGATCTCGCACACACAGTGCCTCGATTACTGATCTCGCACACACA
1 ACACACAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCACACACA
102335952 GTGCCTCGATTACTGATCTCGCACACACAGTGCCTCGATTACTGATCTCGC
66 GTGCCTCGATTACTGATCTCGCACACACAGTGCCTCGATTACTGATCTC-C
*
102336003 ACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGC
1 ACACACAGTGCCTCGATTACTGATCTCGCACACATAGTGC
102336043 TCGGTTAACG
Statistics
Matches: 147, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
114 108 0.73
116 39 0.27
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (115 bp):
ACACACAGTGCCTCGATTACTGATCTCGCACACATAGTGCCTCAATTACTGATCTCGCACACACA
GTGCCTCGATTACTGATCTCGCACACACAGTGCCTCGATTACTGATCTCC
Found at i:102338289 original size:49 final size:49
Alignment explanation
Indices: 102338229--102338351 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
102338219 CATATATTTT
*
102338229 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
102338278 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
102338327 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
102338352 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:102344553 original size:30 final size:30
Alignment explanation
Indices: 102344519--102344578 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
102344509 ATTTAATACG
102344519 AACTTTAAAAAAATTACACTTTGGCCCCTA
1 AACTTTAAAAAAATTACACTTTGGCCCCTA
*** * *
102344549 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTGGCCCCTA
102344579 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTGGCCCCTA
Found at i:102346005 original size:24 final size:25
Alignment explanation
Indices: 102345955--102346012 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
102345945 TAGTGCTATA
*
102345955 TTTTTTTGTACATAATTAAATATTT
1 TTTTTTTTTACATAATTAAATATTT
*
102345980 TTTTTTTTTACTTAATTAAATATTT
1 TTTTTTTTTACATAATTAAATATTT
*
102346005 TTATTTTT
1 TTTTTTTT
102346013 AATCTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTTTTTTACATAATTAAATATTT
Found at i:102349156 original size:28 final size:28
Alignment explanation
Indices: 102349084--102349162 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
102349074 ATCCACCACA
* *
102349084 GGTACATAGTACCTGAAAATATATCACT
1 GGTACATAGTACCTGGAAATATAACACT
** * * * * *
102349112 GACACAGAGTTCTTGGAACTTTAACACT
1 GGTACATAGTACCTGGAAATATAACACT
102349140 GGTACATAGTACCTGGAAATATA
1 GGTACATAGTACCTGGAAATATA
102349163 TCATCGGTAC
Statistics
Matches: 35, Mismatches: 16, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (28 bp):
GGTACATAGTACCTGGAAATATAACACT
Found at i:102349657 original size:21 final size:21
Alignment explanation
Indices: 102349633--102349696 Score: 128
Period size: 21 Copynumber: 3.0 Consensus size: 21
102349623 TATTTGACCC
102349633 TTCAACAACATTTTACGTTAT
1 TTCAACAACATTTTACGTTAT
102349654 TTCAACAACATTTTACGTTAT
1 TTCAACAACATTTTACGTTAT
102349675 TTCAACAACATTTTACGTTAT
1 TTCAACAACATTTTACGTTAT
102349696 T
1 T
102349697 ACCCTTAACG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (21 bp):
TTCAACAACATTTTACGTTAT
Found at i:102352664 original size:47 final size:47
Alignment explanation
Indices: 102352586--102352888 Score: 435
Period size: 49 Copynumber: 6.3 Consensus size: 47
102352576 CCTTTCGGGA
* * * * * * *
102352586 CTTATCACATCTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
102352633 CCTATCACATATATACACTTTCAAATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102352680 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102352727 CTTATCACATATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102352776 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
102352825 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
102352874 CTTATCACATATATA
1 CTTATCACATATATA
102352889 TATCTCATAC
Statistics
Matches: 237, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 97 0.41
49 140 0.59
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102356978 original size:43 final size:43
Alignment explanation
Indices: 102356931--102357063 Score: 128
Period size: 42 Copynumber: 3.1 Consensus size: 43
102356921 CCTCGATTGA
* *
102356931 GATTTATGTATAAGACCATGTCTGGGACATCGGCATTGTATCT
1 GATTTACGTGTAAGACCATGTCTGGGACATCGGCATTGTATCT
* ** *
102356974 GATTT-CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATAT-T
1 GATTTACGTGTAAGACCATGTCTGGGACATCGGCATTG-TATCT
* * * **
102357016 GAATTACATGTAAGACCACGTCCAGGACATCGGCATTGTA-CT
1 GATTTACGTGTAAGACCATGTCTGGGACATCGGCATTGTATCT
*
102357058 TATTTA
1 GATTTA
102357064 TGAGCATCTA
Statistics
Matches: 70, Mismatches: 17, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
42 38 0.54
43 32 0.46
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACATCGGCATTGTATCT
Found at i:102356999 original size:42 final size:42
Alignment explanation
Indices: 102356894--102357055 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 42
102356884 TCTGAGACAT
* * *
102356894 CATGTAAGACCGTGTCTGGGACA-CAGGCCTCG-ATTGAGATT-
1 CATGTAAGACCCTGTCTGGGACATC-GGCATTGTATTGA-ATTA
* * *
102356935 TATGTATAAGACCATGTCTGGGACATCGGCATTGTATCTG-ATTT
1 CATG--TAAGACCCTGTCTGGGACATCGGCATTGTAT-TGAATTA
* ** *
102356979 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CATGTAAGACCCTGTCTGGGACATCGGCATTG-TATTGAATTA
**
102357022 CATGTAAGACCAC-GTCCAGGACATCGGCATTGTA
1 CATGTAAGACC-CTGTCTGGGACATCGGCATTGTA
102357056 CTTATTTATG
Statistics
Matches: 95, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
41 3 0.03
42 28 0.29
43 56 0.59
44 6 0.06
45 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
CATGTAAGACCCTGTCTGGGACATCGGCATTGTATTGAATTA
Found at i:102357030 original size:85 final size:84
Alignment explanation
Indices: 102356896--102357055 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 84
102356886 TGAGACATCA
* * * * **
102356896 TGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGACAT
1 TGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTCATG-ATAAGACCACGTCCAGGACAT
102356961 CGGCATTGTATCTGATTTCG
65 CGGCATTGTATCTGATTTCG
*
102356981 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-ATTACATG-TAAGACCACGTCCAGGAC
1 TGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATT-CATGATAAGACCACGTCCAGGAC
102357044 ATCGGCATTGTA
63 ATCGGCATTGTA
102357056 CTTATTTATG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
85 54 0.83
86 3 0.05
87 8 0.12
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (84 bp):
TGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTCATGATAAGACCACGTCCAGGACATC
GGCATTGTATCTGATTTCG
Found at i:102361047 original size:69 final size:69
Alignment explanation
Indices: 102360936--102361076 Score: 237
Period size: 69 Copynumber: 2.0 Consensus size: 69
102360926 AGAGACATTC
* * * * *
102360936 TCTCGGTAACCTCGTACGGACCAATAAATCTTGGACTTAGTCTTCTTTTTCATCTAAAGGAAAGA
1 TCTCGATAACCTCGTACGGACCAATAAATCTTGGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
102361001 ACTT
66 ACTT
102361005 TCTCGATAACCTCGTACGGACCAATAAATCTTGGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
1 TCTCGATAACCTCGTACGGACCAATAAATCTTGGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
102361070 ACTT
66 ACTT
102361074 TCT
1 TCT
102361077 TCTGGGGTGA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (69 bp):
TCTCGATAACCTCGTACGGACCAATAAATCTTGGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
ACTT
Found at i:102362209 original size:24 final size:24
Alignment explanation
Indices: 102362182--102362228 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
102362172 ACCCATGTTG
102362182 TTGCTTATTGAACTATGGTCTTAA
1 TTGCTTATTGAACTATGGTCTTAA
102362206 TTGCTTATTGAACTATGGTCTTA
1 TTGCTTATTGAACTATGGTCTTA
102362229 CTTGTCAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (24 bp):
TTGCTTATTGAACTATGGTCTTAA
Found at i:102372354 original size:30 final size:30
Alignment explanation
Indices: 102372320--102372376 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
102372310 CTTTAATACG
*
102372320 AACTTTGGCAAAATTACATTTTTGCCCTTA
1 AACTTTGGCAAAATTACACTTTTGCCCTTA
* *
102372350 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGCAAAATTACACTTTTGCCC
102372377 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCTTA
Found at i:102380787 original size:16 final size:17
Alignment explanation
Indices: 102380766--102380798 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
102380756 AATTGTGTTT
*
102380766 AATGAATTG-ATGTGTA
1 AATGAAATGTATGTGTA
102380782 AATGAAATGTATGTGTA
1 AATGAAATGTATGTGTA
102380799 TGGAATGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.36
Consensus pattern (17 bp):
AATGAAATGTATGTGTA
Found at i:102380997 original size:29 final size:28
Alignment explanation
Indices: 102380930--102381001 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
102380920 AAATTGTACA
* * *
102380930 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
102380958 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
102380987 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
102381002 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:102386382 original size:29 final size:29
Alignment explanation
Indices: 102386349--102386422 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
102386339 CCTTCGAGCT
102386349 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
102386378 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
102386407 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
102386423 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:102386383 original size:58 final size:58
Alignment explanation
Indices: 102386290--102386422 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
102386280 ATACTCGATT
* * * * *
102386290 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
102386348 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
102386406 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
102386423 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:102394256 original size:29 final size:29
Alignment explanation
Indices: 102394223--102394296 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
102394213 CCTTCGAGCT
102394223 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
102394252 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
102394281 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
102394297 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:102394257 original size:58 final size:58
Alignment explanation
Indices: 102394164--102394296 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
102394154 ATACTCGATT
* * * * *
102394164 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
102394222 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
102394280 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
102394297 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:102396910 original size:40 final size:40
Alignment explanation
Indices: 102396808--102396991 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 40
102396798 AAATTGAATG
* * * * * *
102396808 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
102396848 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
102396888 ATATCCGGGCTAAGACCCGAAGGC-GTTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * * *
102396928 AAATCCGGGCTAAGAACCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
102396968 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
102396992 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 2 0.02
40 112 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:102407187 original size:2 final size:2
Alignment explanation
Indices: 102407182--102407221 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
102407172 ATCGCCACAC
102407182 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102407222 GTTTTGGTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102419268 original size:28 final size:28
Alignment explanation
Indices: 102419203--102419303 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
102419193 ATAGTGAATC
*
102419203 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
102419232 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
102419260 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
102419290 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102419304 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:102427219 original size:28 final size:28
Alignment explanation
Indices: 102427154--102427254 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
102427144 ATAGTGAATC
*
102427154 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
102427183 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
102427211 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
102427241 CGCACACTTAGTGC
1 CGCACACTTAGTGC
102427255 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:102430864 original size:14 final size:15
Alignment explanation
Indices: 102430839--102430871 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
102430829 TCATGTGCAC
102430839 CAAAGTACTCATCCA
1 CAAAGTACTCATCCA
*
102430854 CAAAG-ACTCATTCA
1 CAAAGTACTCATCCA
102430868 CAAA
1 CAAA
102430872 TAGGTGATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.45, C:0.30, G:0.06, T:0.18
Consensus pattern (15 bp):
CAAAGTACTCATCCA
Found at i:102437569 original size:11 final size:11
Alignment explanation
Indices: 102437546--102437576 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
102437536 ATTCGGATAT
102437546 TGGTTTC-TCA
1 TGGTTTCTTCA
102437556 TGGTTTCTTCA
1 TGGTTTCTTCA
102437567 TGGTTTCTTC
1 TGGTTTCTTC
102437577 CGGCTCCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.06, C:0.19, G:0.19, T:0.55
Consensus pattern (11 bp):
TGGTTTCTTCA
Found at i:102443569 original size:2 final size:2
Alignment explanation
Indices: 102443562--102443591 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
102443552 TTTCATTCAC
102443562 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102443592 CCCATGTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102450720 original size:28 final size:27
Alignment explanation
Indices: 102450668--102450722 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
102450658 ATGTTCCGGC
102450668 TAGAAAAGAAAAGAAGGAGAAAAGAAAA
1 TAGAAAAGAAAAGAAGGAG-AAAGAAAA
*
102450696 TAGAAGAAGAAAGGAGAGGAG-AAGAAA
1 TAGAA-AAGAAAAGA-AGGAGAAAGAAA
102450723 GAACTCGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 11 0.46
29 8 0.33
30 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (27 bp):
TAGAAAAGAAAAGAAGGAGAAAGAAAA
Found at i:102464943 original size:52 final size:51
Alignment explanation
Indices: 102464814--102464945 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
102464804 ATGTGTTCTG
* * *
102464814 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCAT
* * *
102464865 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTT-AAGTTTGCAT
*
102464916 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
102464946 ATTTGTTCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 32 0.46
51 14 0.20
52 24 0.34
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCAT
Found at i:102466474 original size:93 final size:93
Alignment explanation
Indices: 102466362--102466532 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
102466352 GCCCATAAGT
* *
102466362 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102466427 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
102466455 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102466520 CGAGTTCGGATGC
66 CGAGTTCGGATGC
102466533 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:102466548 original size:46 final size:46
Alignment explanation
Indices: 102466354--102466534 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
102466344 TGTAACCCGC
* * *
102466354 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
102466400 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
102466450 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
102466493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
102466535 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:102468483 original size:29 final size:29
Alignment explanation
Indices: 102468444--102468531 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
102468434 CAAAGATAAC
*
102468444 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
102468473 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
102468502 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
102468532 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:102468502 original size:15 final size:15
Alignment explanation
Indices: 102468444--102468522 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
102468434 CAAAGATAAC
*
102468444 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
102468458 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
102468473 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
102468487 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
102468502 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
102468517 AAGAAA
1 AAGAAA
102468523 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:102468531 original size:15 final size:15
Alignment explanation
Indices: 102468455--102468531 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
102468445 AGAAAACCGA
102468455 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
102468470 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
102468484 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
102468498 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
102468514 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
102468529 ATA
1 ATA
102468532 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:102471590 original size:93 final size:93
Alignment explanation
Indices: 102471478--102471648 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
102471468 GCCCATAAGT
* *
102471478 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102471543 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
102471571 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102471636 CGAGTTCGGATGC
66 CGAGTTCGGATGC
102471649 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:102471664 original size:46 final size:46
Alignment explanation
Indices: 102471470--102471650 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
102471460 TGTAACCCGC
* * *
102471470 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
102471516 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
102471566 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
102471609 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
102471651 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:102473599 original size:29 final size:29
Alignment explanation
Indices: 102473560--102473647 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
102473550 CAAAGATAAC
*
102473560 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
102473589 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
102473618 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
102473648 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:102473618 original size:15 final size:15
Alignment explanation
Indices: 102473560--102473638 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
102473550 CAAAGATAAC
*
102473560 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
102473574 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
102473589 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
102473603 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
102473618 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
102473633 AAGAAA
1 AAGAAA
102473639 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:102473647 original size:15 final size:15
Alignment explanation
Indices: 102473571--102473647 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
102473561 AGAAAACCGA
102473571 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
102473586 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
102473600 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
102473614 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
102473630 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
102473645 ATA
1 ATA
102473648 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:102476640 original size:46 final size:46
Alignment explanation
Indices: 102476573--102476731 Score: 184
Period size: 46 Copynumber: 3.4 Consensus size: 46
102476563 TGTAACCGCC
*
102476573 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
102476619 TAAGTGAACTCGGACTCAACTCAACGAGTTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGG--G-C--GTTCGCATCCA
* * *
102476668 T-A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
102476712 TAAGTGAACTCGGACTCAAC
1 TAAGTGAACTCGGACTCAAC
102476732 NNNNNNNNNN
Statistics
Matches: 95, Mismatches: 7, Indels: 22
0.77 0.06 0.18
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 1 0.01
45 1 0.01
46 48 0.51
47 27 0.28
48 1 0.01
49 2 0.02
50 2 0.02
51 3 0.03
52 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:102478779 original size:68 final size:70
Alignment explanation
Indices: 102478707--102478904 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
102478697 ACACCCTGTA
* * * *
102478707 GTAGCTAGGTCACATGCGTGATA-CGAGATCTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TCAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
102478769 ATAAAT
65 ATAAAT
* *
102478775 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTCAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
102478840 ATAAAT
65 ATAAAT
* * *
102478846 GTAGCTAGGTCGCATGCGTGTTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTCAA-GACACCATGTAGACAAGAGAGCTACG
102478905 AGACAAATCG
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTCAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:102478830 original size:71 final size:71
Alignment explanation
Indices: 102478741--102478904 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
102478731 GAGATCTATC
102478741 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
102478806 AGGACA
66 AGGACA
*
102478812 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGTTTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
102478877 AGGACA
66 AGGACA
102478883 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
102478905 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:102485983 original size:49 final size:49
Alignment explanation
Indices: 102485911--102486098 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
102485901 TGAGGTCATG
* *
102485911 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAATTGGTCGCA
* * ** ***
102485960 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAAATTCAATCATG
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGAT-AATT-GGTCGCA
* * * **
102486011 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAATTGGTCGCA
*
102486060 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATA
102486099 GCTTTGGCTA
Statistics
Matches: 111, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 69 0.62
50 8 0.07
51 34 0.31
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:102486079 original size:100 final size:100
Alignment explanation
Indices: 102485906--102486098 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
102485896 TATTGTGAGG
102485906 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
102485971 AAGTGCAAGCTACTATGCGTACCCGATAAATTCAA
66 AAGTGCAAGCTACTATGCGTACCAGATAAATTCAA
* **
102486006 TCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
102486071 AAGTGCAAGCTACTATGCGTACCAGATA
66 AAGTGCAAGCTACTATGCGTACCAGATA
102486099 GCTTTGGCTA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (100 bp):
TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAAGCTACTATGCGTACCAGATAAATTCAA
Found at i:102497755 original size:2 final size:2
Alignment explanation
Indices: 102497748--102497776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
102497738 AAGACTAGTC
102497748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102497777 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102498740 original size:15 final size:15
Alignment explanation
Indices: 102498720--102498751 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
102498710 TTAATGAACA
102498720 CATCATTCACATAAC
1 CATCATTCACATAAC
102498735 CATCATTCACATAAC
1 CATCATTCACATAAC
102498750 CA
1 CA
102498752 AGTTCCTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (15 bp):
CATCATTCACATAAC
Found at i:102502202 original size:25 final size:25
Alignment explanation
Indices: 102502173--102502220 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102502163 TTATAATATG
* * *
102502173 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102502198 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102502221 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102502289 original size:20 final size:20
Alignment explanation
Indices: 102502264--102502322 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
102502254 TAAATATGGT
*
102502264 ATGTATGATATACACATGAA
1 ATGTATGATATGCACATGAA
* *
102502284 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
102502304 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
102502323 GGTAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:102502400 original size:24 final size:24
Alignment explanation
Indices: 102502373--102502515 Score: 193
Period size: 24 Copynumber: 6.0 Consensus size: 24
102502363 GAGGAAGTGA
102502373 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102502397 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
102502421 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
102502444 AAAAGGGCTTATGCCCCAGTTATTG
1 AAAAGGGCTTATGCCCCAGTTA-TC
* * *
102502469 AAAA-GGCTTTTGCCCGAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
102502492 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102502516 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
23 27 0.25
24 67 0.62
25 14 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:102502489 original size:71 final size:72
Alignment explanation
Indices: 102502373--102502516 Score: 204
Period size: 71 Copynumber: 2.0 Consensus size: 72
102502363 GAGGAAGTGA
*
102502373 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
102502436 CCAGTTAT
65 CCAGTTAT
* * * *
102502444 AAAAGGGCTTATGCCCCAGTTATTGAAAA-GGCTTTTGCCCGAGTTATTAAAAGAGGCTAGGCCT
1 AAAAGGGCTTATGCCCCAGTTA-TCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCT
102502508 CCAGTTAT
65 CCAGTTAT
102502516 A
1 A
102502517 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
71 48 0.74
72 17 0.26
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:102502742 original size:31 final size:31
Alignment explanation
Indices: 102502707--102502770 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
102502697 CGTTTACAGT
102502707 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
102502738 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102502769 AA
1 AA
102502771 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102504898 original size:2 final size:2
Alignment explanation
Indices: 102504891--102504947 Score: 98
Period size: 2 Copynumber: 29.0 Consensus size: 2
102504881 TACTTGATAC
*
102504891 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102504932 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
102504948 TTGATGTTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:102506686 original size:16 final size:16
Alignment explanation
Indices: 102506665--102506699 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
102506655 AGTCCTTGTA
102506665 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
102506681 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
102506697 ATT
1 ATT
102506700 AAAATTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:102509938 original size:40 final size:40
Alignment explanation
Indices: 102509830--102510119 Score: 465
Period size: 40 Copynumber: 7.2 Consensus size: 40
102509820 CGGGATTTAA
* * * * *
102509830 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
102509870 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102509910 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102509950 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102509990 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102510030 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102510070 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
102510110 CCGGATATAT
1 CCGGATATAT
102510120 TTCCAATGTT
Statistics
Matches: 233, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.00
40 232 1.00
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:102512523 original size:38 final size:38
Alignment explanation
Indices: 102512441--102512554 Score: 156
Period size: 38 Copynumber: 2.9 Consensus size: 38
102512431 GAATCCAATC
* * * *
102512441 ACCAGCACAAAACCTACGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
102512481 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
*
102512519 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATA
102512555 TTTCCAACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 45 0.66
39 5 0.07
40 18 0.26
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.19
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:102513288 original size:2 final size:2
Alignment explanation
Indices: 102513283--102513307 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
102513273 ATACAACCAC
102513283 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
102513308 ACATGTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102520151 original size:38 final size:38
Alignment explanation
Indices: 102520069--102520191 Score: 147
Period size: 38 Copynumber: 3.2 Consensus size: 38
102520059 GAATCCAATC
* * * *
102520069 ACCAGCACAAAACCTGCAGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCAGGA-TTTAA-CCCGGATATAAT
* * *
102520109 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
*
102520147 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
*
102520185 TCCAGCA
1 ACCAGCA
102520192 TATAGCTTGC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 50 0.69
39 5 0.07
40 17 0.24
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
Found at i:102527260 original size:39 final size:39
Alignment explanation
Indices: 102527209--102527316 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 39
102527199 GAAATTATAA
*
102527209 CCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAGT--CATACTAT
*
102527248 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTCATACTAT
* *
102527288 CCGAGCTAAGACCCGAAGGCATTTGTGCA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCA
102527317 AATCGTGATA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
38 4 0.07
39 26 0.43
40 28 0.47
41 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.29, T:0.20
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAGTCATACTAT
Found at i:102527329 original size:40 final size:38
Alignment explanation
Indices: 102527215--102527330 Score: 115
Period size: 40 Copynumber: 2.9 Consensus size: 38
102527205 ATAACCGGGT
* * * *
102527215 TAAGACCCGAAGGCAATTGTGCAGTGGCTACATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCAGTCG-TATATCCGAGC
* * *
102527254 TAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGAGC
1 TAAGACCCGAAGGCATTTGTGC-AGTC-GTATATCCGAGC
*
102527294 TAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCG
1 TAAGACCCGAAGGCATTTGTGC-AGTCGT-ATATCCG
102527331 GGTTAAGTCC
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
39 21 0.34
40 41 0.66
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (38 bp):
TAAGACCCGAAGGCATTTGTGCAGTCGTATATCCGAGC
Found at i:102535408 original size:40 final size:39
Alignment explanation
Indices: 102535244--102535426 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
102535234 GAAATTGATG
* *
102535244 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * *
102535283 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * * *
102535323 ACATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
102535363 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
102535402 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
102535427 CTTGGTGCGG
Statistics
Matches: 112, Mismatches: 26, Indels: 11
0.75 0.17 0.07
Matches are distributed among these distances:
37 5 0.04
38 2 0.02
39 15 0.13
40 90 0.80
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:102537780 original size:24 final size:24
Alignment explanation
Indices: 102537753--102537802 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
102537743 AGCTCAGAAG
102537753 TATGTGAGAAAAGGTTGTGAAGCT
1 TATGTGAGAAAAGGTTGTGAAGCT
102537777 TATGTGAGAAAAGGTTGTGAAGCT
1 TATGTGAGAAAAGGTTGTGAAGCT
102537801 TA
1 TA
102537803 CTTTGCTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.04, G:0.32, T:0.30
Consensus pattern (24 bp):
TATGTGAGAAAAGGTTGTGAAGCT
Found at i:102539107 original size:71 final size:71
Alignment explanation
Indices: 102538991--102539132 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
102538981 AAATTTGGCG
102538991 TCACTATCTGTTTGGTGAGAAATGTCATGTTTATTCTGATCACAAAAGCCTGAAATACTTGATGA
1 TCACTATCTGTTTGGTGAGAAATGTCATGTTTATTCTGATCACAAAAGCCTGAAATACTTGATGA
102539056 CTCAGA
66 CTCAGA
102539062 TCACTATCTGTTTGGTGAGAAATGTCATGTTTATTCTGATCACAAAAGCCTGAAATACTTGATGA
1 TCACTATCTGTTTGGTGAGAAATGTCATGTTTATTCTGATCACAAAAGCCTGAAATACTTGATGA
102539127 CTCAGA
66 CTCAGA
102539133 AAGATCTGAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (71 bp):
TCACTATCTGTTTGGTGAGAAATGTCATGTTTATTCTGATCACAAAAGCCTGAAATACTTGATGA
CTCAGA
Found at i:102544217 original size:42 final size:42
Alignment explanation
Indices: 102544158--102544357 Score: 271
Period size: 42 Copynumber: 4.8 Consensus size: 42
102544148 AGATACTAGG
102544158 AATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTT
1 AATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTT
*
102544200 AATCTCGCACACTAAGTGCTAATACATAGCCGAAGCTATTTT
1 AATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTT
* * *
102544242 AATCTCGCACACTAAGTGCCAATACATATCCGAAGCTATCTC
1 AATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTT
* * **
102544284 GATCTCACACACTAAGTGCC-ATACATAGCCGAAGCTATCTCG
1 AATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTAT-TTT
* * *
102544326 ATTCTTGCACACTAAAT-CC-ATACATAGCCGAA
1 AATCTCGCACACTAAGTGCCAATACATAGCCGAA
102544358 TTTTCATCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 32 0.23
42 109 0.77
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (42 bp):
AATCTCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTT
Found at i:102548714 original size:43 final size:43
Alignment explanation
Indices: 102548657--102548858 Score: 194
Period size: 43 Copynumber: 4.7 Consensus size: 43
102548647 CAGTGCCATA
* * * *
102548657 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
* * * * *
102548700 TCCCAGATAGGGTCTTACACGTAATTGA-TTAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAA-TCACATATCGATGCCAATG
* *
102548743 TCTCAGACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCCAATG
* *
102548786 TCCCAGACATGGTCTTACATGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCCAATG
*** * *
102548829 TATGAGACATGCTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACACGTAATCACAT
102548859 CTCAGTAACC
Statistics
Matches: 135, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
42 3 0.02
43 130 0.96
44 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:102548810 original size:86 final size:87
Alignment explanation
Indices: 102548660--102548857 Score: 231
Period size: 86 Copynumber: 2.3 Consensus size: 87
102548650 TGCCATATCC
* * * * *
102548660 CAGATATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCAGATAGGGTCTTACACGTAA
1 CAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAGACAGGGTCTTACACGTAA
** * * *
102548724 T-TGATTAACGATGCCAATGTCT
66 TCACAAT-ACAATGCCAATGTAT
* * *
102548746 CAGACATGGTCTTACACGTAATCACAATA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAA
1 CAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAGACAGGGTCTTACACGTAA
102548810 TCACAATACAATGCCAATGTAT
66 TCACAATACAATGCCAATGTAT
* *
102548832 GAGACATGCTCTTACATGTAATCACA
1 CAGACATGGTCTTACATGTAATCACA
102548858 TCTCAGTAAC
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
86 89 0.95
87 5 0.05
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (87 bp):
CAGACATGGTCTTACATGTAATCACAATATCAATGCCAATGTCCCAGACAGGGTCTTACACGTAA
TCACAATACAATGCCAATGTAT
Found at i:102553216 original size:45 final size:45
Alignment explanation
Indices: 102553151--102553265 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
102553141 ATGTAATGGT
** * *
102553151 ATCTTTCAATCATGGCCTTACTCATCTATA-TCACGATGCCATAGC
1 ATCTTTCAGCCATGGTCTTACTCATCAATAGT-ACGATGCCATAGC
* ** * *
102553196 ATCTTTCAGCTATGGTCTTACTCATCAATAGTGGGATGCCATGGT
1 ATCTTTCAGCCATGGTCTTACTCATCAATAGTACGATGCCATAGC
*
102553241 GTCTTTCAGCCATGGTCTTACTCAT
1 ATCTTTCAGCCATGGTCTTACTCAT
102553266 GTTTAGGCTT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (45 bp):
ATCTTTCAGCCATGGTCTTACTCATCAATAGTACGATGCCATAGC
Found at i:102553364 original size:16 final size:17
Alignment explanation
Indices: 102553332--102553365 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
102553322 ACTCATCTCA
102553332 TTTCATTCCATCCATCC
1 TTTCATTCCATCCATCC
*
102553349 TTTCATTTCA-CCATCC
1 TTTCATTCCATCCATCC
102553365 T
1 T
102553366 ATACCTTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.18, C:0.38, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTCATTCCATCCATCC
Done.