Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 335 of 770
Found at i:102557485 original size:38 final size:38
Alignment explanation
Indices: 102557426--102557533 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
102557416 TCAATCATGC
*
102557426 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
102557465 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
102557503 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
102557534 ACTGGGCCGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 55 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:102557491 original size:31 final size:31
Alignment explanation
Indices: 102557449--102557550 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
102557439 CCTTTTCATA
102557449 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
102557486 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
102557518 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
102557549 TT
1 TT
102557551 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:102557787 original size:24 final size:24
Alignment explanation
Indices: 102557741--102557859 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
102557731 GCTTTATCAT
*
102557741 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
102557766 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
102557790 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
102557813 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
102557837 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102557860 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102557820 original size:47 final size:48
Alignment explanation
Indices: 102557741--102557859 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
102557731 GCTTTATCAT
*
102557741 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
102557790 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
102557837 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102557860 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:102557935 original size:20 final size:20
Alignment explanation
Indices: 102557910--102557969 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
102557900 TATGATTACC
102557910 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
102557930 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
102557950 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
102557970 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:102558044 original size:25 final size:25
Alignment explanation
Indices: 102558012--102558084 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
102558002 ATACATAAAC
* *
102558012 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
102558037 CCTAGGGGCAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
*
102558062 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
102558085 CATATTATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:102564247 original size:40 final size:40
Alignment explanation
Indices: 102564202--102564368 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
102564192 CGGAATATAA
102564202 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
102564242 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
102564282 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
102564322 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
102564361 CCGGATAT
1 CCGGATAT
102564369 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102564352 original size:80 final size:79
Alignment explanation
Indices: 102564202--102564368 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
102564192 CGGAATATAA
* *
102564202 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
102564267 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
102564282 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
102564344 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
102564361 CCGGATAT
1 CCGGATAT
102564369 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:102565214 original size:17 final size:19
Alignment explanation
Indices: 102565191--102565236 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
102565181 AAGAAGCATG
102565191 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
102565209 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
102565227 AATCATGCTC
1 AATCATGCTC
102565237 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:102572843 original size:28 final size:27
Alignment explanation
Indices: 102572784--102572844 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
102572774 TTTAATCCTT
* *
102572784 TTAAATA-TTTTTGCATAATTTATTTA
1 TTAAATACCTTTTACATAATTTATTTA
* *
102572810 TTAAATACCTTTTACATTATTTATTTT
1 TTAAATACCTTTTACATAATTTATTTA
102572837 TATAAATA
1 T-TAAATA
102572845 TTAGTTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.24
27 16 0.55
28 6 0.21
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (27 bp):
TTAAATACCTTTTACATAATTTATTTA
Found at i:102572921 original size:12 final size:12
Alignment explanation
Indices: 102572906--102572942 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
102572896 ATTATTTTTA
102572906 TTATTATACATT
1 TTATTATACATT
*
102572918 TTATTTATAAATT
1 TTA-TTATACATT
102572931 TTATTATACATT
1 TTATTATACATT
102572943 ATATGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACATT
Found at i:102572926 original size:30 final size:30
Alignment explanation
Indices: 102572863--102572918 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
102572853 ATAAATAATA
*
102572863 TATATTATTTTTTATTTATATATATTTCAT
1 TATATTATTTTTTATTTATATACATTTCAT
102572893 TATATTA-TTTTTA-TTATTATACATTT
1 TATATTATTTTTTATTTA-TATACATTT
102572919 TATTTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 3 0.12
29 14 0.58
30 7 0.29
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (30 bp):
TATATTATTTTTTATTTATATACATTTCAT
Found at i:102575357 original size:19 final size:19
Alignment explanation
Indices: 102575333--102575411 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
102575323 AATCTTTAAG
102575333 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
102575352 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
102575371 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102575388 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
102575409 GAT
1 GAT
102575412 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:102575363 original size:36 final size:36
Alignment explanation
Indices: 102575323--102575409 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 36
102575313 ATGGAAATAT
102575323 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
102575359 AATC-TTAGATGTGATA--CAATCTTAGATATGATATGC
1 AATCTTTA-A-G-GATATGCAATCTTAGATATGATATGC
*
102575395 AATCTTGAA-GATATG
1 AATCTTTAAGGATATG
102575410 ATCTTGTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
33 4 0.09
35 3 0.07
36 30 0.68
37 3 0.07
38 4 0.09
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
AATCTTTAAGGATATGCAATCTTAGATATGATATGC
Found at i:102578173 original size:23 final size:21
Alignment explanation
Indices: 102578133--102578175 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
102578123 TAGGTTTGTT
*
102578133 GGTTGTTCTCAGTTACTTTTA
1 GGTTGTTCTCAGTCACTTTTA
102578154 GGTTGGTTCTACAGTCACTTTT
1 GGTT-GTTCT-CAGTCACTTTT
102578176 GATTGATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 5 0.26
23 10 0.53
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (21 bp):
GGTTGTTCTCAGTCACTTTTA
Found at i:102582158 original size:17 final size:16
Alignment explanation
Indices: 102582132--102582171 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
102582122 AAAAAAAGGA
102582132 AAAAAGAAAATAAAAAG
1 AAAAA-AAAATAAAAAG
102582149 AGAAAAAAAATAAAAAG
1 A-AAAAAAAATAAAAAG
102582166 AAAAAA
1 AAAAAA
102582172 TAGAGAGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.23
17 13 0.59
18 4 0.18
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (16 bp):
AAAAAAAAATAAAAAG
Found at i:102583225 original size:44 final size:44
Alignment explanation
Indices: 102583082--102583264 Score: 149
Period size: 44 Copynumber: 4.1 Consensus size: 44
102583072 CAAAGAAACA
* * *
102583082 AGATTTGGCATCCCTGTGTTTATAGAGAAACAGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTACAGAG-AACAAATCGAAGATAGC
* * * * * **
102583127 AGATCTGTCA-CTCCTGTGCTTACAGCAAAACAAATTGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTACAG-AGAACAAATCGAAGATAGC
* * * *
102583172 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTACAGAGAACAAATCGAAGATAGC
102583215 AGATTTGGCATCCCTGTGTTTACA-AGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTACAGA-GAACAAATCGAAG--ATAGC
102583261 AGAT
1 AGAT
102583265 CTGATTTTTG
Statistics
Matches: 107, Mismatches: 22, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.01
43 16 0.15
44 45 0.42
45 34 0.32
46 11 0.10
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTACAGAGAACAAATCGAAGATAGC
Found at i:102583319 original size:93 final size:93
Alignment explanation
Indices: 102583214--102583662 Score: 252
Period size: 87 Copynumber: 5.1 Consensus size: 93
102583204 TTGAAGATAG
* *
102583214 CAGATTTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGATTTTTGGATG
1 CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
*
102583279 TTCTCATACCAAAGCAGATCTAAAATAA
66 TTCTCATACCAAAGCAGATCCAAAATAA
* * * * * * * **
102583307 CAGATCTGGCAT--CTCTATTT-CGACGGAGAGC--AT-G--TACATAGCAGGTCTAACCTTCAG
1 CAGATCTGGCATCCCTGTGTTTAC-AAGGA-A-CAAATCGAAGACATAGCAGATCTGACTTTTGG
**
102583364 ATGTT-T-ATACTGAAGCAGATCCAAAAT--
63 ATGTTCTCATACCAAAGCAGATCCAAAATAA
* * * *
102583391 --GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATG
1 CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
* *
102583454 TTCTCACACCAAAGCAGATCCAAGATAA
66 TTCTCATACCAAAGCAGATCCAAAATAA
* * * * * * * * * ***
102583482 CAAATCTGGCATCTCC---ATTT-CGACGG---AGAGC-AGGTACATAGCAGGTCTAACCTTCAA
1 CAGATCTGGCATC-CCTGTGTTTAC-AAGGAACAAATCGAAG-ACATAGCAGATCTGACTTTTGG
** *
102583539 ATGTT-T-ATACTGAAGCAGATCCAAGAT--
63 ATGTTCTCATACCAAAGCAGATCCAAAATAA
* * * * *
102583566 --GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATG
1 CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
* * *
102583629 TTCTTACACCAAAGCAGATCCAAGATAA
66 TTCTCATACCAAAGCAGATCCAAAATAA
*
102583657 TAGATC
1 CAGATC
102583663 CGACATTTCC
Statistics
Matches: 254, Mismatches: 68, Indels: 68
0.65 0.17 0.17
Matches are distributed among these distances:
81 1 0.00
82 18 0.07
83 1 0.00
84 17 0.07
85 3 0.01
86 36 0.14
87 49 0.19
88 48 0.19
89 35 0.14
90 3 0.01
91 18 0.07
92 1 0.00
93 23 0.09
94 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (93 bp):
CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
TTCTCATACCAAAGCAGATCCAAAATAA
Found at i:102583454 original size:87 final size:87
Alignment explanation
Indices: 102583363--102583837 Score: 239
Period size: 87 Copynumber: 5.4 Consensus size: 87
102583353 CTAACCTTCA
102583363 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
1 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
*
102583428 GACATAGCAGATTTGACTTTTG
66 GACATAGCAGATTTGACTTTCG
* ** ** * *** *
102583450 GATGTTCTCACACCAAAGCAGATCCAAGATAACAAATCTGGCA-TC-TCCATTT-CGACGG---A
1 GATGTT-T-ATACTGAAGCAGATCC-A-A-AA-TGATTTGGCATTCTTGTGTTTAC-AAGGAACA
* * * * * * * *
102583509 GAGC-AGGTACATAGCAGGTCTAACCTTCA
59 AATCGAAG-ACATAGCAGATTTGACTTTCG
* *
102583538 AATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
1 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
102583603 GACATAGCAGATTTGACTTTCG
66 GACATAGCAGATTTGACTTTCG
* ** ** * * *
102583625 GATGTTCTTACACCAAAGCAGATCCAAGATAATAGATCCGACATTTCCAT-T-TCTAC--GGAGA
1 GATG-T-TTATACTGAAGCAGATCC-A-A-AAT-GATTTGGCA-TT-CTTGTGTTTACAAGGA-A
* * * * *
102583686 GC--A--G-ATACATAGCAGATCTAACCTTCA
57 -CAAATCGAAGACATAGCAGATTTGACTTTCG
* * * *
102583713 GATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGACCAAATCGA
1 GATG-TTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGA
* *
102583777 AGACATAGCAGATTTGGCTTTCAC
65 AGACATAGCAGATTTGACTTTC-G
** * * *
102583801 G-TGTTTACGCTGAAGTAGATCTAAGATGATTTGGCAT
1 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCAT
102583838 ATCTGTATTG
Statistics
Matches: 275, Mismatches: 77, Indels: 72
0.65 0.18 0.17
Matches are distributed among these distances:
80 2 0.01
81 2 0.01
82 17 0.06
83 5 0.02
84 13 0.05
85 3 0.01
86 29 0.11
87 78 0.28
88 51 0.19
89 29 0.11
90 3 0.01
91 13 0.05
92 7 0.03
93 18 0.07
94 3 0.01
95 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
GACATAGCAGATTTGACTTTCG
Found at i:102583507 original size:175 final size:174
Alignment explanation
Indices: 102583216--102583797 Score: 914
Period size: 175 Copynumber: 3.3 Consensus size: 174
102583206 GAAGATAGCA
* * *
102583216 GATTTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGATTTTTGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
* * * *
102583281 CTCATACCAAAGCAGATCTAAAATAACAGATCTGGCATCTCTATTTCGACGGAGAGCATGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCA-GTACAT
*
102583346 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAAAT
130 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
*
102583391 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
*
102583456 CTCACACCAAAGCAGATCCAAGATAACAAATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCA-GTACAT
*
102583521 AGCAGGTCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGAT
130 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
* *
102583566 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
* * * * * *
102583631 CTTACACCAAAGCAGATCCAAGATAATAGATCCGACATTTCCATTTCTACGGAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAG-TACAT
*
102583696 AGCAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGAT
130 AGCAGGTCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT
* * *
102583741 GATTTGGCATCCTTGTGTTCACAAGGACCAAATCGAAGACATAGCAGATTTGGCTTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTT
102583798 CACGTGTTTA
Statistics
Matches: 379, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
174 1 0.00
175 375 0.99
176 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (174 bp):
GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGTACATA
GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
Found at i:102584289 original size:19 final size:19
Alignment explanation
Indices: 102584265--102584332 Score: 104
Period size: 19 Copynumber: 3.7 Consensus size: 19
102584255 AATCTTTAAG
102584265 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
102584284 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
102584303 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
102584320 GATATGTAATCTT
1 GATATGCAATCTT
102584333 GAAAATATGA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 16 0.36
19 28 0.64
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:102591219 original size:13 final size:13
Alignment explanation
Indices: 102591185--102591270 Score: 56
Period size: 13 Copynumber: 6.8 Consensus size: 13
102591175 TCACAAATTA
102591185 TTAT-TATTATTT
1 TTATATATTATTT
*
102591197 TCA-ATCATTATTT
1 TTATAT-ATTATTT
*
102591210 TTATATATTATTA
1 TTATATATTATTT
* *
102591223 TTATATTTTACTT
1 TTATATATTATTT
* *
102591236 GTAT-TA-TATAT
1 TTATATATTATTT
102591247 TTAT-TAATTATTT
1 TTATAT-ATTATTT
*
102591260 ATATATATTAT
1 TTATATATTAT
102591271 CCTTACATAT
Statistics
Matches: 55, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
11 7 0.13
12 5 0.09
13 40 0.73
14 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (13 bp):
TTATATATTATTT
Found at i:102591932 original size:32 final size:30
Alignment explanation
Indices: 102591861--102591932 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
102591851 ATTGATATTG
*
102591861 TATTATT-CTTTTTGTATGTCATGCATTAT
1 TATTATTACTTTTTGTATATCATGCATTAT
* *
102591890 T-TTATTACTTTTCTGTATATCATGTATTTT
1 TATTATTACTTTT-TGTATATCATGCATTAT
102591920 TAATTATTACTTT
1 T-ATTATTACTTT
102591933 GTATGTTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.14
29 6 0.17
30 15 0.42
32 10 0.28
ACGTcount: A:0.22, C:0.10, G:0.07, T:0.61
Consensus pattern (30 bp):
TATTATTACTTTTTGTATATCATGCATTAT
Found at i:102603868 original size:206 final size:204
Alignment explanation
Indices: 102603577--102604299 Score: 867
Period size: 206 Copynumber: 3.5 Consensus size: 204
102603567 TATTCCGTGG
* *
102603577 GGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
1 GGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
* *
102603642 TTTGTCGTCTCTTCATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTAATTGGAGAGTAG
66 TTTGTCGTCTCTTTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTAA-TGGAGAGTAG
*
102603707 ATACATAGCAGATCTGACCTTCAGATGATTAGACTGAAGTAAGATCCAAGATGATTTGGCATCCT
130 ATACATAGCAGATCTGACCTTCAGATGATTAGACTGAAG-AAGATCCAAGATGATTAGGCATCCT
102603772 TGTGCTTACAA
194 TGTGCTTACAA
* *
102603783 GGAGCAAATCGAAGACATGGCTGATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGA
1 GGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
* * * * *
102603848 TTTGTCGTCT-TTGTATTGTCAGAGAACAAATCGAAGTCTGGTATTTCCACTTTGATGGAGGGCA
66 TTTGTCGTCTCTT-TATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCAC-TTAATGGAGAGTA
* * * * * *
102603912 GACACATAGCAGATCTCACCTTCAGATGTTTACG-CTGAAGCAGATCTAAGATGA-TAGATCTTA
129 GATACATAGCAGATCTGACCTTCAGATGATTA-GACTGAAGAAGATCCAAGATGATTAG-GC--A
** * **
102603975 TCTCTCTGTATTTGGCGG
190 TC-CT-TGTGCTT-ACAA
* * * * ** * *
102603993 GGAGTAAATTGAAGATATAGCTGATTTGACTTTCACGCATTTATGATGAAGCAAATCTAATATGA
1 GGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
* *
102604058 TTTGTCGTCTCTTTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCAACTTCAATAGAGAGTAG
66 TTTGTCGTCTCTTTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTT-AATGGAGAGTAG
* * * * **
102604123 ATACATAGTAGATCTGACCTTCAGACGATTAGACTGAAACAAGATCCAAGATGATTCGGCATTTT
130 ATACATAGCAGATCTGACCTTCAGATGATTAGACTG-AAGAAGATCCAAGATGATTAGGCATCCT
102604188 TGTGCTTACAA
194 TGTGCTTACAA
* * * * * * *
102604199 GGAGTAAATCGAAAACATAGCTGATTTAGTTTTCACGTGCTTATGATGAAGCAAATTTAAGATGA
1 GGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
** *
102604264 TTTGTTATCTCTGTATTGTCAGAGAACAAATCGAAG
66 TTTGTCGTCTCTTTATTGTCAGAGAACAAATCGAAG
102604300 AAGCAGATTT
Statistics
Matches: 432, Mismatches: 71, Indels: 28
0.81 0.13 0.05
Matches are distributed among these distances:
204 2 0.00
205 15 0.03
206 234 0.54
207 12 0.03
208 3 0.01
209 10 0.02
210 137 0.32
211 17 0.04
212 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (204 bp):
GGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
TTTGTCGTCTCTTTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTAATGGAGAGTAGA
TACATAGCAGATCTGACCTTCAGATGATTAGACTGAAGAAGATCCAAGATGATTAGGCATCCTTG
TGCTTACAA
Found at i:102604281 original size:416 final size:416
Alignment explanation
Indices: 102603500--102604299 Score: 1242
Period size: 416 Copynumber: 1.9 Consensus size: 416
102603490 TAAGCTGCAG
*
102603500 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * **
102603565 TATATTCCGTGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
66 TATATTCCGCGGGGAGCAAATCGAAGATATAGCTGATTTGACTTTCACGCATTTACGATGAAGCA
*
102603630 AATCTAAGATGATTTGTCGTCTCTTCATTGTCAGAGAACAAATCAAAGTCTGGCATCTCCACTTA
131 AATCTAAGATGATTTGTCGTCTCTTCATTGTCAGAGAACAAATCAAAGTCTGGCATCTCAACTTA
* * **
102603695 ATTGGAGAGTAGATACATAGCAGATCTGACCTTCAGATGATTAGACTGAAGTAAGATCCAAGATG
196 ATTAGAGAGTAGATACATAGCAGATCTGACCTTCAGACGATTAGACTGAAACAAGATCCAAGATG
* * * * * *
102603760 ATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATGGCTGATTTGGCTTTCATGTGTTT
261 ATTCGGCATCCTTGTGCTTACAAGGAGCAAATCGAAAACATAGCTGATTTAGCTTTCACGTGCTT
* *
102603825 ACGATGAAGCAAATCTAAGATGATTTGTCGTCTTTGTATTGTCAGAGAACAAATCGAAGTCTGGT
326 ACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGT
102603890 ATTTCCACTTTGATGGAGGGCAGACA
391 ATTTCCACTTTGATGGAGGGCAGACA
* *
102603916 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCTAAGATGATAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* ** * * *
102603981 TGTATTTGGCGGGGAGTAAATTGAAGATATAGCTGATTTGACTTTCACGCATTTATGATGAAGCA
66 TATATTCCGCGGGGAGCAAATCGAAGATATAGCTGATTTGACTTTCACGCATTTACGATGAAGCA
* * *
102604046 AATCTAATATGATTTGTCGTCTCTTTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCAACTTC
131 AATCTAAGATGATTTGTCGTCTCTTCATTGTCAGAGAACAAATCAAAGTCTGGCATCTCAACTT-
*
102604111 AA-TAGAGAGTAGATACATAGTAGATCTGACCTTCAGACGATTAGACTGAAACAAGATCCAAGAT
195 AATTAGAGAGTAGATACATAGCAGATCTGACCTTCAGACGATTAGACTGAAACAAGATCCAAGAT
** * *
102604175 GATTCGGCATTTTTGTGCTTACAAGGAGTAAATCGAAAACATAGCTGATTTAGTTTTCACGTGCT
260 GATTCGGCATCCTTGTGCTTACAAGGAGCAAATCGAAAACATAGCTGATTTAGCTTTCACGTGCT
* * *
102604240 TATGATGAAGCAAATTTAAGATGATTTGTTATCTCTGTATTGTCAGAGAACAAATCGAAG
325 TACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
102604300 AAGCAGATTT
Statistics
Matches: 345, Mismatches: 38, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
416 343 0.99
417 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (416 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
TATATTCCGCGGGGAGCAAATCGAAGATATAGCTGATTTGACTTTCACGCATTTACGATGAAGCA
AATCTAAGATGATTTGTCGTCTCTTCATTGTCAGAGAACAAATCAAAGTCTGGCATCTCAACTTA
ATTAGAGAGTAGATACATAGCAGATCTGACCTTCAGACGATTAGACTGAAACAAGATCCAAGATG
ATTCGGCATCCTTGTGCTTACAAGGAGCAAATCGAAAACATAGCTGATTTAGCTTTCACGTGCTT
ACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGT
ATTTCCACTTTGATGGAGGGCAGACA
Found at i:102607003 original size:26 final size:26
Alignment explanation
Indices: 102606967--102607050 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
102606957 CATGAAATTC
102606967 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
102606993 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
102607019 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
102607045 TTATCA
1 TTATCA
102607051 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:102608928 original size:21 final size:21
Alignment explanation
Indices: 102608897--102608938 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
102608887 ACACTATAAG
102608897 ATTATTTTATCATATATATATT
1 ATTATTTTATCATATAT-TATT
*
102608919 ATTA-TTTATCGTATATTATT
1 ATTATTTTATCATATATTATT
102608939 TTTCACAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTATTTTATCATATATTATT
Found at i:102608985 original size:13 final size:13
Alignment explanation
Indices: 102608969--102609046 Score: 54
Period size: 13 Copynumber: 6.2 Consensus size: 13
102608959 ATTTTCCATC
102608969 ATTATTTTTATAT
1 ATTATTTTTATAT
102608982 ATTATTTTTATAT
1 ATTATTTTTATAT
* * *
102608995 TTTACTTGTAT-T
1 ATTATTTTTATAT
* *
102609007 A-AATATTTAT-T
1 ATTATTTTTATAT
*
102609018 AATTATTTATATAT
1 -ATTATTTTTATAT
* *
102609032 ATTATCTTTACAT
1 ATTATTTTTATAT
102609045 AT
1 AT
102609047 ATACTTTCGT
Statistics
Matches: 48, Mismatches: 14, Indels: 6
0.71 0.21 0.09
Matches are distributed among these distances:
11 6 0.12
12 2 0.04
13 39 0.81
14 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (13 bp):
ATTATTTTTATAT
Found at i:102609704 original size:33 final size:31
Alignment explanation
Indices: 102609632--102609704 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
102609622 ATTGATATTG
*
102609632 TATTATT-C-TTTTTGTATGTCATGCATTAT
1 TATTATTACTTTTTTGTATATCATGCATTAT
*
102609661 T-TTATTACTTTTTTGTATATCATGTATTATT
1 TATTATTACTTTTTTGTATATCATGCATTA-T
102609692 TAATTATTACTTT
1 T-ATTATTACTTT
102609705 GTATGTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
28 5 0.14
29 2 0.05
30 18 0.49
31 2 0.05
33 10 0.27
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.62
Consensus pattern (31 bp):
TATTATTACTTTTTTGTATATCATGCATTAT
Found at i:102611603 original size:22 final size:22
Alignment explanation
Indices: 102611575--102611626 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
102611565 ATTTAAATTA
102611575 GATTGCATGCTTACAGAACATT
1 GATTGCATGCTTACAGAACATT
102611597 GATTGCATGCTTACAGAACATT
1 GATTGCATGCTTACAGAACATT
102611619 GATTGCAT
1 GATTGCAT
102611627 ACACACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (22 bp):
GATTGCATGCTTACAGAACATT
Found at i:102614895 original size:51 final size:51
Alignment explanation
Indices: 102614820--102614919 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 51
102614810 AAGAAGGGAT
*
102614820 GAAATTATCGTCATATCCTCACGAGGATCCTTCTAACATCGAGACGATGAC
1 GAAATTATCGTCACATCCTCACGAGGATCCTTCTAACATCGAGACGATGAC
* *
102614871 GAAATTGTCGTCACATCCTGACGAGGATCCTTCTAACATCGAGACGATG
1 GAAATTATCGTCACATCCTCACGAGGATCCTTCTAACATCGAGACGATG
102614920 TGACAAAATC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (51 bp):
GAAATTATCGTCACATCCTCACGAGGATCCTTCTAACATCGAGACGATGAC
Found at i:102614916 original size:23 final size:23
Alignment explanation
Indices: 102614840--102614917 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
102614830 TCATATCCTC
102614840 ACGAGGATCCTTCTAACATCGAG
1 ACGAGGATCCTTCTAACATCGAG
*** * **
102614863 ACGATGACGAAATTGTCGTCACATCCTG
1 ACGA-G--GATCCT-TC-TAACATCGAG
102614891 ACGAGGATCCTTCTAACATCGAG
1 ACGAGGATCCTTCTAACATCGAG
102614914 ACGA
1 ACGA
102614918 TGTGACAAAA
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
23 15 0.39
24 3 0.08
25 3 0.08
26 3 0.08
27 3 0.08
28 11 0.29
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (23 bp):
ACGAGGATCCTTCTAACATCGAG
Found at i:102619507 original size:49 final size:49
Alignment explanation
Indices: 102619454--102619660 Score: 369
Period size: 49 Copynumber: 4.2 Consensus size: 49
102619444 GATTCTACGC
* * *
102619454 GATGAATGTCAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
* *
102619503 GATGAATGTGAAAGCGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
102619552 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
102619601 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
102619650 GATGAATGTGA
1 GATGAATGTGA
102619661 TAGGGCCGAG
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 153 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
Found at i:102619662 original size:31 final size:31
Alignment explanation
Indices: 102619624--102619691 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
102619614 GCGTATACAT
* * *
102619624 ATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGATAAGGCCGAATGGCCAACGTGATGA
* * *
102619655 ATGTGATAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGATAAGGCCGAATGGCCAACGTGATGA
102619686 ATGTGA
1 ATGTGA
102619692 AAGTGTATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.37, T:0.24
Consensus pattern (31 bp):
ATGTGATAAGGCCGAATGGCCAACGTGATGA
Found at i:102622831 original size:6 final size:6
Alignment explanation
Indices: 102622820--102622867 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
102622810 CTTTCATATC
*
102622820 AAAAAT AAAAAT AAAAAT AAAAAT AAGCAAA- ACAAAT AAAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA--AAAT AAAAAT -AAAAAT AAAA
102622868 TCTAAACTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
5 3 0.08
6 24 0.67
7 6 0.17
8 3 0.08
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:102624895 original size:21 final size:22
Alignment explanation
Indices: 102624849--102624901 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
102624839 ATGAGGGTCT
*
102624849 CACACGCCCGTGTGCCCACTAA
1 CACACGCCCGTGTGCCCACAAA
* *
102624871 -ACACGACCGTGTGTCCA-AAA
1 CACACGCCCGTGTGCCCACAAA
102624891 CACACGCCCGT
1 CACACGCCCGT
102624902 ATGAAATCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.26, C:0.42, G:0.19, T:0.13
Consensus pattern (22 bp):
CACACGCCCGTGTGCCCACAAA
Found at i:102625962 original size:3 final size:3
Alignment explanation
Indices: 102625954--102625983 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
102625944 GATGGAGCAA
102625954 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
102625984 AATCAAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (3 bp):
GTG
Found at i:102627389 original size:32 final size:32
Alignment explanation
Indices: 102627348--102627431 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
102627338 ATTATTTCCC
*
102627348 AATCGGTCCTTCCTTGTTATTCGCACTTTGTA
1 AATCGGTCCTTCCTTGTTATCCGCACTTTGTA
* **
102627380 AATCGGTCCTTTCTTGTTATCCGTGCTTTGTA
1 AATCGGTCCTTCCTTGTTATCCGCACTTTGTA
*
102627412 AATCAGTCCTCTCCCTTGTT
1 AATCGGTCCT-T-CCTTGTT
102627432 TCTATTCTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
32 37 0.84
33 1 0.02
34 6 0.14
ACGTcount: A:0.14, C:0.26, G:0.15, T:0.44
Consensus pattern (32 bp):
AATCGGTCCTTCCTTGTTATCCGCACTTTGTA
Found at i:102627560 original size:14 final size:15
Alignment explanation
Indices: 102627538--102627566 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
102627528 GTATTTATCA
102627538 TTTACTTTTTATTTT
1 TTTACTTTTTATTTT
102627553 TTTA-TTTTTATTTT
1 TTTACTTTTTATTTT
102627567 CTTCTTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTACTTTTTATTTT
Found at i:102627615 original size:3 final size:3
Alignment explanation
Indices: 102627607--102627659 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
102627597 CTAATATTCT
102627607 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
102627655 TTA TT
1 TTA TT
102627660 CACTATGGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:102627949 original size:3 final size:3
Alignment explanation
Indices: 102627941--102627997 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
102627931 AATGTTTTAC
102627941 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102627989 TAT TAT TAT
1 TAT TAT TAT
102627998 GGAGCTACTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:102634766 original size:44 final size:43
Alignment explanation
Indices: 102634703--102635148 Score: 150
Period size: 44 Copynumber: 10.1 Consensus size: 43
102634693 GCCTTGTCTC
* *
102634703 CCTGAGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTT
1 CCTGAGTAGCAAGGAAGCAGGCTGAAGACTGTAGTCTTATCTT
** * *
102634746 CCTGATGTAGCAAGGAAGCAGATTGAAGATTGTAGATCTTATCTC
1 CCTGA-GTAGCAAGGAAGCAGGCTGAAGACTGTAG-TCTTATCTT
** * * * * * * *
102634791 CCAAAGCAG-TAGTGGAGTA-GATAGAAGACAGTGAATCTTATCTT
1 CCTGAGTAGCAAG-GAAGCAGGCT-GAAGACTGT-AGTCTTATCTT
* * ** ** * ** * *
102634835 CCCGAGGTAGCAAGGGAGCAGAATTTAGCCACTAGCCTTATTTT
1 CCTGA-GTAGCAAGGAAGCAGGCTGAAGACTGTAGTCTTATCTT
* * *
102634879 CCTGAGCAGCAAAGG-AGCAGGCTTAAAACTGTAGTCTTATCTT
1 CCTGAGTAGC-AAGGAAGCAGGCTGAAGACTGTAGTCTTATCTT
* * * * *
102634922 CCTCATGTAGTAAGGAAGCAGGCTGAAGATTGTAGATTTTATCTC
1 CCTGA-GTAGCAAGGAAGCAGGCTGAAGACTGTAG-TCTTATCTT
* * * * * * * *
102634967 CCTAAGCAG-TAGTAGAGTA-GATCGAAGACGGTGAATCTTATCTT
1 CCTGAGTAGCAAGGA-AGCAGGCT-GAAGACTGT-AGTCTTATCTT
* ** ** * * *
102635011 CCCGAGGTAGC-AGGAGAGCAGATTTTAG-CCGCTAGCCTTATCTC
1 CCTGA-GTAGCAAGGA-AGCAGGCTGAAGACTG-TAGTCTTATCTT
** * * * *
102635055 CCTGAACAGTAAGGGAGTAGGCTGAAGATTGTAGTCTTATCTT
1 CCTGAGTAGCAAGGAAGCAGGCTGAAGACTGTAGTCTTATCTT
* * * *
102635098 CCTAATGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTC
1 CCTGA-GTAGCAAGGAAGCAGGCTGAAGACTGTAG-TCTTATCTT
102635143 CCTGAG
1 CCTGAG
102635149 CAGTAGTGGA
Statistics
Matches: 285, Mismatches: 95, Indels: 45
0.67 0.22 0.11
Matches are distributed among these distances:
43 67 0.24
44 151 0.53
45 62 0.22
46 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (43 bp):
CCTGAGTAGCAAGGAAGCAGGCTGAAGACTGTAGTCTTATCTT
Found at i:102634800 original size:176 final size:176
Alignment explanation
Indices: 102634607--102635363 Score: 1021
Period size: 176 Copynumber: 4.3 Consensus size: 176
102634597 GACTACAGAC
* *
102634607 CTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTGAATCTTATC-TCCCTGCGGTAGCA
1 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCC-GAGGTAGCA
* * * *
102634671 GGGGAGCAGATTTAAGCCACTAGCCTTGTCTCCCTGAGTAGCAAGGGAGCAGGCTGAAGATTGTA
65 GGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGCAGCAAAGGAGCAGGCTGAAGATTGTA
*
102634736 GTCTTATCTTCCTGATGTAGCAAGGAAGCAGATTGAAGATTGTAGAT
130 GTCTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
* * * *
102634783 CTTATCTCCCAAAGCAGTAGTGGAGTAGATAGAAGACAGTGAATCTTATCTTCCCGAGGTAGCAA
1 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCAG
* * * * * *
102634848 GGGAGCAGAATTTAGCCACTAGCCTTATTTTCCTGAGCAGCAAAGGAGCAGGCTTAAAACTGTAG
66 GGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGCAGCAAAGGAGCAGGCTGAAGATTGTAG
* * *
102634913 TCTTATCTTCCTCATGTAGTAAGGAAGCAGGCTGAAGATTGTAGAT
131 TCTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
* *
102634959 TTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCAG
1 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCAG
* * * * * *
102635024 GAGAGCAGATTTTAGCCGCTAGCCTTATCTCCCTGAACAGTAAGGGAGTAGGCTGAAGATTGTAG
66 GGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGCAGCAAAGGAGCAGGCTGAAGATTGTAG
*
102635089 TCTTATCTTCCTAATGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
131 TCTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
* * *
102635135 CTTATCTCCCTGAGCAGTAGTGGAGTAGATCAAAGACGGCGAATCTTATCTTCCCGAGGTAGCAG
1 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCAG
* ** * * * ** *
102635200 GGGAGTAGATTTTAGCCACCGGCCTTATCTCCCTGAGGTAGTAAAGGAGTAGGCCAAAGATTGGA
66 GGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGA-GCAGCAAAGGAGCAGGCTGAAGATTGTA
* *
102635265 GTCTTATCTTCCTGATGTAGCAATGAAGCAGAATGAAGATTGTAGAT
130 GTCTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
* * * * ** * *
102635312 CTTATTTCCCTGAGATAGCAGTGGAACAGATCGAAGATGGCGAATCTTATCT
1 CTTATCTCCCTAAG-CAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCT
102635364 CCCTAAAGTT
Statistics
Matches: 512, Mismatches: 66, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
176 398 0.78
177 83 0.16
178 31 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (176 bp):
CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGCAG
GGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGCAGCAAAGGAGCAGGCTGAAGATTGTAG
TCTTATCTTCCTGATGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
Found at i:102635234 original size:88 final size:87
Alignment explanation
Indices: 102634606--102635236 Score: 307
Period size: 88 Copynumber: 7.2 Consensus size: 87
102634596 AGACTACAGA
* * *
102634606 CCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTGAATCTTATC-TCCCTGCGGTAGC
1 CCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGG-GAATCTTATCTTCCC-GAGGTAGC
* *
102634670 AGGGGAGCAGATTTAAGCCACTAG
64 AGGGGAGCAGATTTTAGCCACTGG
* * * * * ** * * * *
102634694 CCTTGTCTCCCTGAGTAGCAAG-GGAGCAG-GCTGAAGATTGTAGTCTTATCTTCCTGATGTAGC
1 CCTTATCTCCCTGAGCAG-TAGTGGAGTAGATC-GAAGACGGGAATCTTATCTTCCCGAGGTAGC
* * ** *
102634757 AAGGAAGCAGATTGAAG--ATTGTAG
64 AGGGGAGCAGATTTTAGCCACTG--G
* ** * *
102634781 ATCTTATCTCCCAAAGCAGTAGTGGAGTAGATAGAAGACAGTGAATCTTATCTTCCCGAGGTAGC
1 -CCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGAC-GGGAATCTTATCTTCCCGAGGTAGC
* * *
102634846 AAGGGAGCAGAATTTAGCCACTAG
64 AGGGGAGCAGATTTTAGCCACTGG
* * * ** * * * * * * * * *
102634870 CCTTATTTTCCTGAGCAGCAAAGGAGCAG-GCTTAAAACTGTAGTCTTATCTTCCTC-ATGTAGT
1 CCTTATCTCCCTGAGCAGTAGTGGAGTAGATC-GAAGACGGGAATCTTATCTTCC-CGAGGTAGC
* * ** ** *
102634933 AAGGAAGCAGGCTGAAG--ATTGTAG
64 AGGGGAGCAGATTTTAGCCACTG--G
** * *
102634957 ATTTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGGTAGC
1 -CCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGG-GAATCTTATCTTCCCGAGGTAGC
* * *
102635022 AGGAGAGCAGATTTTAGCCGCTAG
64 AGGGGAGCAGATTTTAGCCACTGG
* * ** * * ** *
102635046 CCTTATCTCCCTGAACAGTAAG-GGAGTAG-GCTGAAGATTGTAGTCTTATCTTCCTAATGTAGC
1 CCTTATCTCCCTGAGCAGT-AGTGGAGTAGATC-GAAGACGGGAATCTTATCTTCCCGAGGTAGC
* * * ** *
102635109 AAGGAAGCAGACTGAAG--ATTGTAG
64 AGGGGAGCAGATTTTAGCCACTG--G
* *
102635133 ATCTTATCTCCCTGAGCAGTAGTGGAGTAGATCAAAGACGGCGAATCTTATCTTCCCGAGGTAGC
1 -CCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGG-GAATCTTATCTTCCCGAGGTAGC
* *
102635198 AGGGGAGTAGATTTTAGCCACCGG
64 AGGGGAGCAGATTTTAGCCACTGG
102635222 CCTTATCTCCCTGAG
1 CCTTATCTCCCTGAG
102635237 GTAGTAAAGG
Statistics
Matches: 375, Mismatches: 137, Indels: 62
0.65 0.24 0.11
Matches are distributed among these distances:
85 5 0.01
87 94 0.25
88 174 0.46
89 97 0.26
91 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (87 bp):
CCTTATCTCCCTGAGCAGTAGTGGAGTAGATCGAAGACGGGAATCTTATCTTCCCGAGGTAGCAG
GGGAGCAGATTTTAGCCACTGG
Found at i:102635378 original size:45 final size:44
Alignment explanation
Indices: 102635329--102635520 Score: 124
Period size: 44 Copynumber: 4.3 Consensus size: 44
102635319 CCCTGAGATA
*
102635329 GCAGTGGAACAGATCGAAGATGGCGAA-TCTTATCTCCCTAAAGTT
1 GCAGTGGAACAGATCGAAG-TAGC-AACTCTTATCTCCCTAAAGTT
* * * * * * *
102635374 GCAGTTGAATAGATTGAAGCCA-CAACCCTTATCCCCCTGAAGTT
1 GCAGTGGAACAGATCGAAG-TAGCAACTCTTATCTCCCTAAAGTT
* * * * *
102635418 GCAGT--AAGGCAGGTCAAAGTTGCAAGTCTTATCTCTCTAAAGTT
1 GCAGTGGAA--CAGATCGAAGTAGCAACTCTTATCTCCCTAAAGTT
* ** *
102635462 GCAGTGGAGCAGA-CTGAAGATAGCAGTTCTTATTTCCCTAAAGTT
1 GCAGTGGAACAGATC-GAAG-TAGCAACTCTTATCTCCCTAAAGTT
*
102635507 GCAGTGGAATAGAT
1 GCAGTGGAACAGAT
102635521 TAAAGATACA
Statistics
Matches: 108, Mismatches: 30, Indels: 17
0.70 0.19 0.11
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 55 0.51
45 47 0.44
46 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
GCAGTGGAACAGATCGAAGTAGCAACTCTTATCTCCCTAAAGTT
Found at i:102637276 original size:15 final size:16
Alignment explanation
Indices: 102637251--102637280 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
102637241 GTATTTATCA
102637251 TTTACTTTTTATTTTT
1 TTTACTTTTTATTTTT
102637267 TTTA-TTTTTATTTT
1 TTTACTTTTTATTTT
102637281 CTTCTTTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTACTTTTTATTTTT
Found at i:102637617 original size:3 final size:3
Alignment explanation
Indices: 102637611--102637645 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
102637601 CATCATCATC
102637611 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
102637646 GAAGCTACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:102640706 original size:2 final size:2
Alignment explanation
Indices: 102640699--102640735 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
102640689 CAATTACACT
*
102640699 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
102640736 TCTTCTTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:102641043 original size:39 final size:38
Alignment explanation
Indices: 102641000--102641136 Score: 166
Period size: 40 Copynumber: 3.5 Consensus size: 38
102640990 TTCTAGCGCG
* * *
102641000 TAGCCTGCGGACCTTAAGTCTGGTTATAATTCCAGCACA
1 TAGCCTGCGGACTTTAAGTCCGG-TATAATTCCAGCATA
102641039 TAGCCTGCGGACTTTAAGTCCGAGTATAATTCCAGCATA
1 TAGCCTGCGGACTTTAAGTCCG-GTATAATTCCAGCATA
* * *
102641078 TAGCCTGCGGGTCTTTAAGCCCGAATATAATTCCAGCATA
1 TAGCCTGC-GGACTTTAAGTCCG-GTATAATTCCAGCATA
*
102641118 TAGCCTGCGGGTCTTTAAG
1 TAGCCTGC-GGACTTTAAG
102641137 CCCAGATACA
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 42 0.47
40 48 0.53
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (38 bp):
TAGCCTGCGGACTTTAAGTCCGGTATAATTCCAGCATA
Found at i:102641107 original size:40 final size:40
Alignment explanation
Indices: 102641024--102641139 Score: 189
Period size: 40 Copynumber: 2.9 Consensus size: 40
102641014 TAAGTCTGGT
* * * *
102641024 TATAATTCCAGCACATAGCCTGC-GGACTTTAAGTCCGAG
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
102641063 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
102641103 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCC
1 TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCC
102641140 AGATACACAT
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 22 0.31
40 50 0.69
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAA
Found at i:102641497 original size:2 final size:2
Alignment explanation
Indices: 102641485--102641516 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
102641475 TACTTTCAGA
102641485 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102641517 CGACTTTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:102644816 original size:27 final size:27
Alignment explanation
Indices: 102644786--102644983 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
102644776 TACTAAAATG
* *
102644786 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
102644813 CCCTTGACTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
102644840 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
102644867 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
**
102644894 CCCTTAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
102644921 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
102644948 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
102644975 CCCTCGATT
1 CCCTCGATT
102644984 GTGAAATTAC
Statistics
Matches: 147, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 145 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:102644906 original size:81 final size:81
Alignment explanation
Indices: 102644786--102644978 Score: 298
Period size: 81 Copynumber: 2.4 Consensus size: 81
102644776 TACTAAAATG
* *
102644786 CCCTCGATTTGTAGAATTACCATTTTACCCTTGACTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTTAACTTATAGAATTACCGTTTCACCCTCGATTTA
*
102644851 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* *
102644867 CCCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTTAACTTATAGAATTACCGTTTCACCCTCGATTTA
102644932 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
102644948 CCCTC-AGTTTACAAAATTACCGTTTTACCCT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCT
102644979 CGATTGTGAA
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 1 0.01
81 102 0.99
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTTAACTTATAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:102645141 original size:26 final size:27
Alignment explanation
Indices: 102644988--102645154 Score: 126
Period size: 27 Copynumber: 6.2 Consensus size: 27
102644978 TCGATTGTGA
* * *
102644988 AATTACTGAAATACCCCTGTAGGATAA
1 AATTACTAAAATACCCCTGTAGGGTAG
* ** *
102645015 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACTAAAATACCCCT-GTAGGGTAG
* *** *
102645042 AATTACTAAAATACCCTTTGT-TTATAA
1 AATTACTAAAATACCC-CTGTAGGGTAG
*
102645069 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-AAAATACCCCTGTAGGGTAG
* **
102645096 AATTATTGGAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
*
102645123 AATT-CTAAAATACCCCTGTAGGGTGG
1 AATTACTAAAATACCCCTGTAGGGTAG
102645149 AATTAC
1 AATTAC
102645155 CGAGATATCT
Statistics
Matches: 115, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
26 26 0.23
27 85 0.74
28 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGTAGGGTAG
Found at i:102645659 original size:22 final size:22
Alignment explanation
Indices: 102645607--102645673 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
102645597 TTAAAGCCTT
* *
102645607 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
102645629 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
102645651 CTGATTATGGCTGTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
102645673 C
1 C
102645674 GTATTTGCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:102645866 original size:26 final size:25
Alignment explanation
Indices: 102645822--102645903 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 25
102645812 TGCCACGTAT
* * *
102645822 TCTGTTATGTGGCTTTGCCACATTA
1 TCTGTTCTGTGGCTCTGCCACAATA
102645847 TCTGTTCTAGTGGCTCTGCCACAATA
1 TCTGTTCT-GTGGCTCTGCCACAATA
* * *
102645873 TTTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCT-GTGGCTCTGCCACAATA
102645900 TCTG
1 TCTG
102645904 ATAACTGAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 7 0.15
26 19 0.40
27 21 0.45
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (25 bp):
TCTGTTCTGTGGCTCTGCCACAATA
Found at i:102646092 original size:31 final size:31
Alignment explanation
Indices: 102646040--102646182 Score: 205
Period size: 31 Copynumber: 4.5 Consensus size: 31
102646030 TTACATTCAC
*
102646040 ATTCTGATTTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA--TTTTGATTCTGTTACCTGATACTG
*
102646073 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
102646104 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * **
102646135 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
102646166 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
102646183 AGTTCTAATA
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 97 0.94
33 6 0.06
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:102646107 original size:19 final size:19
Alignment explanation
Indices: 102646083--102646140 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
102646073 ATTCTAATTT
102646083 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
102646102 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
102646114 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
102646133 TGATTCTG
1 TGATTCTG
102646141 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:102646110 original size:6 final size:6
Alignment explanation
Indices: 102646064--102646182 Score: 91
Period size: 6 Copynumber: 19.3 Consensus size: 6
102646054 ATTCTGTTAC
* * * *
102646064 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
102646113 TTGATT CTG-TT ACCTGATA CTGATT CTGATT CTGATT CTG-TCAC CTGATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT
*
102646163 TTGATT CTGATT CTGATT CT
1 CTGATT CTGATT CTGATT CT
102646183 AGTTCTAATA
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.06
6 72 0.81
7 9 0.10
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:102648182 original size:27 final size:27
Alignment explanation
Indices: 102648152--102648343 Score: 166
Period size: 27 Copynumber: 7.3 Consensus size: 27
102648142 TACTGAAATG
* *
102648152 CCCTTGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
102648179 CCCTCGACTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
102648206 CCCTCGATTTACAAAATTACC------
1 CCCTCGATTTATAGAATTACCATTTTA
*
102648227 GCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
** *
102648254 CCCTTAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
102648281 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
* * *
102648308 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
102648335 CCCTCGATT
1 CCCTCGATT
102648344 GTGAAATTAC
Statistics
Matches: 137, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
21 18 0.13
26 1 0.01
27 117 0.85
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:102648225 original size:54 final size:53
Alignment explanation
Indices: 102648166--102648343 Score: 190
Period size: 54 Copynumber: 3.4 Consensus size: 53
102648156 TGATTTGTAG
* * * *
102648166 AATTACCATTTTACCCTCGACTTATAGAATTACCGTTTCACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-ATTTACAA
* * *
102648220 AATTACCG------CCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCC-TCATTTACAA
* *
102648268 AATTACCGTTTTACCCTC-AGTTTACAAAATTACCATTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTATAGAATTACCATTTTACCCTCA-TTTACAA
102648322 AATTACCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
102648344 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
48 40 0.39
49 1 0.01
53 3 0.03
54 57 0.56
55 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (53 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCATTTACAA
Found at i:102648231 original size:21 final size:21
Alignment explanation
Indices: 102648207--102648247 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
102648197 ACCGTTTCAC
102648207 CCTCGATTTACAAAATTACCG
1 CCTCGATTTACAAAATTACCG
* *
102648228 CCTCGATTTATAGAATTACC
1 CCTCGATTTACAAAATTACC
102648248 ATTTTACCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (21 bp):
CCTCGATTTACAAAATTACCG
Found at i:102648243 original size:75 final size:75
Alignment explanation
Indices: 102648157--102648301 Score: 229
Period size: 75 Copynumber: 1.9 Consensus size: 75
102648147 AAATGCCCTT
* *
102648157 GATTTGTAGAATTACCATTTTACCCTCGACTTATAGAATTACCGTTTCACCCTC-GATTTACAAA
1 GATTTATAGAATTACCATTTTACCCTCAACTTATAGAATTACCGTTTCACCCTCAG-TTTACAAA
102648221 ATTACCGCCTC
65 ATTACCGCCTC
* * *
102648232 GATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAA
1 GATTTATAGAATTACCATTTTACCCTCAACTTATAGAATTACCGTTTCACCCTCAGTTTACAAAA
102648297 TTACC
66 TTACC
102648302 ATTTTACCCT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 63 0.98
76 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.37
Consensus pattern (75 bp):
GATTTATAGAATTACCATTTTACCCTCAACTTATAGAATTACCGTTTCACCCTCAGTTTACAAAA
TTACCGCCTC
Found at i:102648245 original size:48 final size:48
Alignment explanation
Indices: 102648180--102648275 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
102648170 ACCATTTTAC
* *
102648180 CCTCGACTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCG
1 CCTCGACTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
* * * * *
102648228 CCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCG
1 CCTCGACTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
102648276 TTTTACCCTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.35
Consensus pattern (48 bp):
CCTCGACTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
Found at i:102648365 original size:27 final size:25
Alignment explanation
Indices: 102648342--102648417 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 25
102648332 TTACCCTCGA
* *
102648342 TTGTGAAATTACTGAAATACCCCTG
1 TTGTAAAATTACTAAAATACCCCTG
* *
102648367 TAGGATAAAATTACCAAAATACCCCTGG
1 T-TG-TAAAATTACTAAAATACCCCT-G
102648395 TTTGTAAAATTACTAAAATACCC
1 -TTGTAAAATTACTAAAATACCC
102648418 TTTGTTTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 1 0.02
26 1 0.02
27 36 0.88
28 2 0.05
29 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (25 bp):
TTGTAAAATTACTAAAATACCCCTG
Found at i:102648424 original size:27 final size:27
Alignment explanation
Indices: 102648371--102648446 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
102648361 CCCCTGTAGG
102648371 ATAAAATTACCAAAATACCCCTGGTTT
1 ATAAAATTACCAAAATACCCCTGGTTT
* * * *
102648398 GTAAAATTACTAAAATACCCTTTGTTT
1 ATAAAATTACCAAAATACCCCTGGTTT
* *
102648425 ATAAAATTATCGAAATACCCCT
1 ATAAAATTACCAAAATACCCCT
102648447 TTAGGGTAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (27 bp):
ATAAAATTACCAAAATACCCCTGGTTT
Found at i:102648459 original size:27 final size:27
Alignment explanation
Indices: 102648429--102648621 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
102648419 TTGTTTATAA
* *
102648429 AATTATCGAAATACCCCTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102648456 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102648482 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
102648509 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102648536 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
102648563 AATT-CTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
102648589 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
102648615 AATTACC
1 AATTACC
102648622 ATTTTGCCCA
Statistics
Matches: 146, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
26 62 0.42
27 84 0.58
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:102648505 original size:53 final size:54
Alignment explanation
Indices: 102648429--102648619 Score: 237
Period size: 53 Copynumber: 3.6 Consensus size: 54
102648419 TTGTTTATAA
* *
102648429 AATTATCGAAATACCCCTT-TAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
*
102648482 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * * * * *
102648536 AATTACTGGAATACCCCTGTAGGGTAGAATTCT-AAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
102648589 AATTACCGAGATA-CCTTGTGGGGTAAAATTA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTA
102648620 CCATTTTGCC
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
52 19 0.16
53 59 0.50
54 41 0.34
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
Found at i:102648513 original size:107 final size:106
Alignment explanation
Indices: 102648356--102648622 Score: 263
Period size: 107 Copynumber: 2.5 Consensus size: 106
102648346 GAAATTACTG
* * * * ** * *
102648356 AAATACCCCTGTAGGATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTTGTGGGTAAAATTACCAAAATACCC-CT
** * *
102648421 GT-TTATAAAATTA-TCGAAATACCCCTTTAGGGTAGAATTATCG
64 GTAGGATAAAATTACT-GAAATACCCCTGTAGGGTAGAATTAT-A
* * *
102648464 CAATA-CCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGT-GGGTAAAATTACCAAAATACCCCTG
* * * *
102648528 TAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTCTA
65 TAGGATAAAATTACTGAAATACCCCTGTAGGGTAGAATTATA
* *
102648570 AAATACCCCTGTAGGGTGGAATTACCGAGATA-CCTTGTGGGGTAAAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGT-GGGTAAAATTACCA
102648623 TTTTGCCCAT
Statistics
Matches: 130, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
106 31 0.24
107 94 0.72
108 5 0.04
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (106 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTGGGTAAAATTACCAAAATACCCCTGT
AGGATAAAATTACTGAAATACCCCTGTAGGGTAGAATTATA
Found at i:102648519 original size:80 final size:80
Alignment explanation
Indices: 102648429--102648620 Score: 246
Period size: 80 Copynumber: 2.4 Consensus size: 80
102648419 TTGTTTATAA
* * *
102648429 AATTATCGAAATACCCCTTTAGGGTAGAATTA-TCGCAATA-CCCTGTAGGGTAGAATTACCGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GCAATACCCCTGTAGGGTAGAATT-CCAAA
*
102648492 ATACCCTTGTAGGGTAG
64 ATACCCCTGTAGGGTAG
* *
102648509 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTCTAAAAT
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGCAATACCCCTGTAGGGTAGAATTCCAAAAT
*
102648574 ACCCCTGTAGGGTGG
66 ACCCCTGTAGGGTAG
* * * *
102648589 AATTACCGAGATA-CCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
102648621 CATTTTGCCC
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 16 0.16
80 65 0.66
81 18 0.18
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGCAATACCCCTGTAGGGTAGAATTCCAAAAT
ACCCCTGTAGGGTAG
Found at i:102649099 original size:22 final size:22
Alignment explanation
Indices: 102649047--102649113 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
102649037 TTAAAGCCTT
* *
102649047 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
102649069 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
102649091 CTGATTATGGCTGTATGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
102649113 C
1 C
102649114 GTATTTGCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:102649306 original size:26 final size:25
Alignment explanation
Indices: 102649262--102649343 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 25
102649252 TGCCACGTAT
* * *
102649262 TCTGTTATGTGGCTTTGCCACATTA
1 TCTGTTCTGTGGCTCTGCCACAATA
102649287 TCTGTTCTAGTGGCTCTGCCACAATA
1 TCTGTTCT-GTGGCTCTGCCACAATA
* * *
102649313 TTTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCT-GTGGCTCTGCCACAATA
102649340 TCTG
1 TCTG
102649344 ATAACTGAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 7 0.15
26 19 0.40
27 21 0.45
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (25 bp):
TCTGTTCTGTGGCTCTGCCACAATA
Found at i:102649532 original size:31 final size:31
Alignment explanation
Indices: 102649480--102649622 Score: 205
Period size: 31 Copynumber: 4.5 Consensus size: 31
102649470 TTACATTCAC
*
102649480 ATTCTGATTTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA--TTTTGATTCTGTTACCTGATACTG
*
102649513 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
102649544 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * **
102649575 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
102649606 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
102649623 AGTTCTAATA
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 97 0.94
33 6 0.06
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:102649547 original size:19 final size:19
Alignment explanation
Indices: 102649523--102649580 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
102649513 ATTCTAATTT
102649523 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
102649542 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
102649554 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
102649573 TGATTCTG
1 TGATTCTG
102649581 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:102649550 original size:6 final size:6
Alignment explanation
Indices: 102649504--102649622 Score: 91
Period size: 6 Copynumber: 19.3 Consensus size: 6
102649494 ATTCTGTTAC
* * * *
102649504 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
102649553 TTGATT CTG-TT ACCTGATA CTGATT CTGATT CTGATT CTG-TCAC CTGATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT
*
102649603 TTGATT CTGATT CTGATT CT
1 CTGATT CTGATT CTGATT CT
102649623 AGTTCTAATA
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.06
6 72 0.81
7 9 0.10
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:102651622 original size:27 final size:27
Alignment explanation
Indices: 102651592--102651783 Score: 166
Period size: 27 Copynumber: 7.3 Consensus size: 27
102651582 TACTGAAATG
* *
102651592 CCCTTGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
102651619 CCCTCGACTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
102651646 CCCTCGATTTACAAAATTACC------
1 CCCTCGATTTATAGAATTACCATTTTA
*
102651667 GCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
** *
102651694 CCCTTAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
102651721 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
* * *
102651748 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
102651775 CCCTCGATT
1 CCCTCGATT
102651784 GTGAAATTAC
Statistics
Matches: 137, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
21 18 0.13
26 1 0.01
27 117 0.85
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:102651665 original size:54 final size:53
Alignment explanation
Indices: 102651606--102651783 Score: 190
Period size: 54 Copynumber: 3.4 Consensus size: 53
102651596 TGATTTGTAG
* * * *
102651606 AATTACCATTTTACCCTCGACTTATAGAATTACCGTTTCACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-ATTTACAA
* * *
102651660 AATTACCG------CCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCC-TCATTTACAA
* *
102651708 AATTACCGTTTTACCCTC-AGTTTACAAAATTACCATTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTATAGAATTACCATTTTACCCTCA-TTTACAA
102651762 AATTACCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
102651784 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
48 40 0.39
49 1 0.01
53 3 0.03
54 57 0.56
55 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (53 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCATTTACAA
Found at i:102651671 original size:21 final size:21
Alignment explanation
Indices: 102651647--102651687 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
102651637 ACCGTTTCAC
102651647 CCTCGATTTACAAAATTACCG
1 CCTCGATTTACAAAATTACCG
* *
102651668 CCTCGATTTATAGAATTACC
1 CCTCGATTTACAAAATTACC
102651688 ATTTTACCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (21 bp):
CCTCGATTTACAAAATTACCG
Found at i:102651683 original size:75 final size:75
Alignment explanation
Indices: 102651597--102651741 Score: 229
Period size: 75 Copynumber: 1.9 Consensus size: 75
102651587 AAATGCCCTT
* *
102651597 GATTTGTAGAATTACCATTTTACCCTCGACTTATAGAATTACCGTTTCACCCTC-GATTTACAAA
1 GATTTATAGAATTACCATTTTACCCTCAACTTATAGAATTACCGTTTCACCCTCAG-TTTACAAA
102651661 ATTACCGCCTC
65 ATTACCGCCTC
* * *
102651672 GATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAA
1 GATTTATAGAATTACCATTTTACCCTCAACTTATAGAATTACCGTTTCACCCTCAGTTTACAAAA
102651737 TTACC
66 TTACC
102651742 ATTTTACCCT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 63 0.98
76 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.37
Consensus pattern (75 bp):
GATTTATAGAATTACCATTTTACCCTCAACTTATAGAATTACCGTTTCACCCTCAGTTTACAAAA
TTACCGCCTC
Found at i:102651685 original size:48 final size:48
Alignment explanation
Indices: 102651620--102651715 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
102651610 ACCATTTTAC
* *
102651620 CCTCGACTTATAGAATTACCGTTTCACCCTCGATTTACAAAATTACCG
1 CCTCGACTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
* * * * *
102651668 CCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCG
1 CCTCGACTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
102651716 TTTTACCCTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.35
Consensus pattern (48 bp):
CCTCGACTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
Found at i:102651805 original size:27 final size:25
Alignment explanation
Indices: 102651782--102651857 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 25
102651772 TTACCCTCGA
* *
102651782 TTGTGAAATTACTGAAATACCCCTG
1 TTGTAAAATTACTAAAATACCCCTG
* *
102651807 TAGGATAAAATTACCAAAATACCCCTGG
1 T-TG-TAAAATTACTAAAATACCCCT-G
102651835 TTTGTAAAATTACTAAAATACCC
1 -TTGTAAAATTACTAAAATACCC
102651858 TTTGTTTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 1 0.02
26 1 0.02
27 36 0.88
28 2 0.05
29 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (25 bp):
TTGTAAAATTACTAAAATACCCCTG
Found at i:102651864 original size:27 final size:27
Alignment explanation
Indices: 102651811--102651886 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
102651801 CCCCTGTAGG
102651811 ATAAAATTACCAAAATACCCCTGGTTT
1 ATAAAATTACCAAAATACCCCTGGTTT
* * * *
102651838 GTAAAATTACTAAAATACCCTTTGTTT
1 ATAAAATTACCAAAATACCCCTGGTTT
* *
102651865 ATAAAATTATCGAAATACCCCT
1 ATAAAATTACCAAAATACCCCT
102651887 TTAGGGTAGA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.33
Consensus pattern (27 bp):
ATAAAATTACCAAAATACCCCTGGTTT
Found at i:102651899 original size:27 final size:27
Alignment explanation
Indices: 102651869--102652061 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
102651859 TTGTTTATAA
* *
102651869 AATTATCGAAATACCCCTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102651896 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
102651922 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
102651949 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
102651976 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
102652003 AATT-CTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
102652029 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
102652055 AATTACC
1 AATTACC
102652062 ATTTTGCCCA
Statistics
Matches: 146, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
26 62 0.42
27 84 0.58
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:102651945 original size:53 final size:54
Alignment explanation
Indices: 102651869--102652059 Score: 237
Period size: 53 Copynumber: 3.6 Consensus size: 54
102651859 TTGTTTATAA
* *
102651869 AATTATCGAAATACCCCTT-TAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
*
102651922 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * * * * *
102651976 AATTACTGGAATACCCCTGTAGGGTAGAATTCT-AAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
102652029 AATTACCGAGATA-CCTTGTGGGGTAAAATTA
1 AATTACCGAAATACCCTTGTAGGGTAGAATTA
102652060 CCATTTTGCC
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
52 19 0.16
53 59 0.50
54 41 0.34
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
Found at i:102651953 original size:107 final size:106
Alignment explanation
Indices: 102651796--102652062 Score: 263
Period size: 107 Copynumber: 2.5 Consensus size: 106
102651786 GAAATTACTG
* * * * ** * *
102651796 AAATACCCCTGTAGGATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTTGTGGGTAAAATTACCAAAATACCC-CT
** * *
102651861 GT-TTATAAAATTA-TCGAAATACCCCTTTAGGGTAGAATTATCG
64 GTAGGATAAAATTACT-GAAATACCCCTGTAGGGTAGAATTAT-A
* * *
102651904 CAATA-CCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGT-GGGTAAAATTACCAAAATACCCCTG
* * * *
102651968 TAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTCTA
65 TAGGATAAAATTACTGAAATACCCCTGTAGGGTAGAATTATA
* *
102652010 AAATACCCCTGTAGGGTGGAATTACCGAGATA-CCTTGTGGGGTAAAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGT-GGGTAAAATTACCA
102652063 TTTTGCCCAT
Statistics
Matches: 130, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
106 31 0.24
107 94 0.72
108 5 0.04
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (106 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTGGGTAAAATTACCAAAATACCCCTGT
AGGATAAAATTACTGAAATACCCCTGTAGGGTAGAATTATA
Found at i:102651959 original size:80 final size:80
Alignment explanation
Indices: 102651869--102652060 Score: 246
Period size: 80 Copynumber: 2.4 Consensus size: 80
102651859 TTGTTTATAA
* * *
102651869 AATTATCGAAATACCCCTTTAGGGTAGAATTA-TCGCAATA-CCCTGTAGGGTAGAATTACCGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GCAATACCCCTGTAGGGTAGAATT-CCAAA
*
102651932 ATACCCTTGTAGGGTAG
64 ATACCCCTGTAGGGTAG
* *
102651949 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTCTAAAAT
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGCAATACCCCTGTAGGGTAGAATTCCAAAAT
*
102652014 ACCCCTGTAGGGTGG
66 ACCCCTGTAGGGTAG
* * * *
102652029 AATTACCGAGATA-CCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
102652061 CATTTTGCCC
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 16 0.16
80 65 0.66
81 18 0.18
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGCAATACCCCTGTAGGGTAGAATTCCAAAAT
ACCCCTGTAGGGTAG
Found at i:102652539 original size:22 final size:22
Alignment explanation
Indices: 102652487--102652553 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
102652477 TTAAAGCCTT
* *
102652487 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
102652509 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
102652531 CTGATTATGGCTGTATGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
102652553 C
1 C
102652554 ATATTTGCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:102652746 original size:26 final size:25
Alignment explanation
Indices: 102652702--102652783 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 25
102652692 TGCCACGTAT
* * *
102652702 TCTGTTATGTGGCTTTGCCACATTA
1 TCTGTTCTGTGGCTCTGCCACAATA
102652727 TCTGTTCTAGTGGCTCTGCCACAATA
1 TCTGTTCT-GTGGCTCTGCCACAATA
* * *
102652753 TTTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCT-GTGGCTCTGCCACAATA
102652780 TCTG
1 TCTG
102652784 ATAACTGAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 7 0.15
26 19 0.40
27 21 0.45
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (25 bp):
TCTGTTCTGTGGCTCTGCCACAATA
Found at i:102652972 original size:31 final size:31
Alignment explanation
Indices: 102652920--102653062 Score: 205
Period size: 31 Copynumber: 4.5 Consensus size: 31
102652910 TTACATTCAC
*
102652920 ATTCTGATTTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA--TTTTGATTCTGTTACCTGATACTG
*
102652953 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
102652984 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * **
102653015 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
102653046 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
102653063 AGTTCTAATA
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 97 0.94
33 6 0.06
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:102652987 original size:19 final size:19
Alignment explanation
Indices: 102652963--102653020 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
102652953 ATTCTAATTT
102652963 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
102652982 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
102652994 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
102653013 TGATTCTG
1 TGATTCTG
102653021 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:102652990 original size:6 final size:6
Alignment explanation
Indices: 102652944--102653062 Score: 91
Period size: 6 Copynumber: 19.3 Consensus size: 6
102652934 ATTCTGTTAC
* * * *
102652944 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
102652993 TTGATT CTG-TT ACCTGATA CTGATT CTGATT CTGATT CTG-TCAC CTGATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT
*
102653043 TTGATT CTGATT CTGATT CT
1 CTGATT CTGATT CTGATT CT
102653063 AGTTCTAATA
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.06
6 72 0.81
7 9 0.10
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:102655144 original size:34 final size:35
Alignment explanation
Indices: 102655106--102655180 Score: 102
Period size: 34 Copynumber: 2.2 Consensus size: 35
102655096 AGCCAACGGC
*
102655106 AAAAAGAAAAGAAAGGAAGAG-AAG-AATAAAAAT-G
1 AAAAAGAAAAGAAA--AAGAGAAAGAAAGAAAAATGG
102655140 AAAAAGAAAAGAAAAAGAGAAAGAAAGAAAAATGG
1 AAAAAGAAAAGAAAAAGAGAAAGAAAGAAAAATGG
102655175 AAAAAG
1 AAAAAG
102655181 GTAGGAAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
32 5 0.14
33 3 0.08
34 22 0.59
35 7 0.19
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (35 bp):
AAAAAGAAAAGAAAAAGAGAAAGAAAGAAAAATGG
Found at i:102655177 original size:16 final size:17
Alignment explanation
Indices: 102655108--102655171 Score: 62
Period size: 16 Copynumber: 3.8 Consensus size: 17
102655098 CCAACGGCAA
102655108 AAAGAAAAGAAAGGAAGAG
1 AAAGAAAAGAAA--AAGAG
* * *
102655127 -AAGAATA-AAAATGAA
1 AAAGAAAAGAAAAAGAG
102655142 AAAGAAAAGAAAAAGAG
1 AAAGAAAAGAAAAAGAG
102655159 AAAG-AAAGAAAAA
1 AAAGAAAAGAAAAA
102655172 TGGAAAAAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
15 3 0.08
16 15 0.41
17 13 0.35
18 6 0.16
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (17 bp):
AAAGAAAAGAAAAAGAG
Found at i:102657931 original size:28 final size:28
Alignment explanation
Indices: 102657891--102657952 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
102657881 TACTAGAATG
*
102657891 CCCCTATGTATGCAAAATTACCATTATA
1 CCCCTATGTATGCAAAATGACCATTATA
*
102657919 CCCCTATGTATGCAAAATGACCTTTATA
1 CCCCTATGTATGCAAAATGACCATTATA
102657947 CCCCTA
1 CCCCTA
102657953 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCCTATGTATGCAAAATGACCATTATA
Found at i:102658116 original size:27 final size:28
Alignment explanation
Indices: 102658058--102658147 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
102658048 AGGAAGCGTC
*
102658058 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
102658086 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
102658113 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
102658142 CTGGTG
1 CTGGTG
102658148 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:102658158 original size:29 final size:28
Alignment explanation
Indices: 102658068--102658158 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
102658058 CTGGTGGCTA
* * *
102658068 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
102658096 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
102658123 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
102658152 TGTCACA
1 TGCCACA
102658159 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:102658166 original size:55 final size:56
Alignment explanation
Indices: 102658058--102658172 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
102658048 AGGAAGCGTC
* * *
102658058 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
102658113 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
102658169 CTGG
1 CTGG
102658173 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:102658634 original size:19 final size:19
Alignment explanation
Indices: 102658610--102658648 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
102658600 TTTTAATATT
* *
102658610 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
102658629 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
102658648 T
1 T
102658649 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:102659261 original size:11 final size:10
Alignment explanation
Indices: 102659233--102659266 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
102659223 AGCCTGTAAG
102659233 TATTCTGAAT
1 TATTCTGAAT
*
102659243 TTTTCTGAAT
1 TATTCTGAAT
102659253 ATATTCTGAAT
1 -TATTCTGAAT
102659264 TAT
1 TAT
102659267 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:102672132 original size:71 final size:71
Alignment explanation
Indices: 102672048--102672211 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
102672038 CGATTTGTCT
102672048 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102672113 CTTTCA
66 CTTTCA
102672119 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
102672184 CTTTCA
66 CTTTCA
102672190 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
102672212 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:102672249 original size:71 final size:70
Alignment explanation
Indices: 102672048--102672245 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
102672038 CGATTTGTCT
* * * *
102672048 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
102672113 CTTTCA
65 CTTTCA
* * * *
102672119 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
102672184 CTTTCA
65 CTTTCA
* *
102672190 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
102672246 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:102674675 original size:27 final size:26
Alignment explanation
Indices: 102674640--102674751 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
102674630 AGCATGGCTG
* *
102674640 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
102674666 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
102674694 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
102674721 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
102674748 CCAG
1 CCAG
102674752 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:102674732 original size:54 final size:54
Alignment explanation
Indices: 102674640--102674751 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
102674630 AGCATGGCTG
* *
102674640 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
102674694 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
102674748 CCAG
1 CCAG
102674752 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:102674854 original size:25 final size:25
Alignment explanation
Indices: 102674826--102674876 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
102674816 ACAGATTTAA
102674826 ATCAACATGCTTTTCAGACAAAATT
1 ATCAACATGCTTTTCAGACAAAATT
102674851 ATCAACATGCTTTTCAGACAAAATT
1 ATCAACATGCTTTTCAGACAAAATT
102674876 A
1 A
102674877 ACCCTAGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (25 bp):
ATCAACATGCTTTTCAGACAAAATT
Found at i:102677070 original size:2 final size:2
Alignment explanation
Indices: 102677018--102677050 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
102677008 TGAATTGAGT
*
102677018 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
102677051 GTGTGAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:102681898 original size:47 final size:47
Alignment explanation
Indices: 102681847--102682319 Score: 784
Period size: 47 Copynumber: 10.1 Consensus size: 47
102681837 TTCCACGTTT
* ** *
102681847 ATCACATTAGCCATTCTACCTTATCAAACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
102681894 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * *
102681941 ATCACATTGGCCATTCGGCCTTGTCACATATATACATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
102681988 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
102682035 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
102682082 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
102682129 ATTACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
102682176 ATCACATTGGACATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* *
102682223 ATCACATTGGCCATTAGGCTTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * **
102682270 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
102682317 ATC
1 ATC
102682320 TCATAAAATC
Statistics
Matches: 404, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 404 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:102681900 original size:23 final size:23
Alignment explanation
Indices: 102681874--102681947 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
102681864 ACCTTATCAA
102681874 ACATATGCATGTTCACATTCATC
1 ACATATGCATGTTCACATTCATC
* *
102681897 ACAT-TGGCCA--TTCGGCCTT-ATCAC
1 ACATAT-G-CATGTTC-ACATTCAT--C
102681921 ACATATGCATGTTCACATTCATC
1 ACATATGCATGTTCACATTCATC
102681944 ACAT
1 ACAT
102681948 TGGCCATTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
22 6 0.16
23 15 0.39
24 11 0.29
25 6 0.16
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.32
Consensus pattern (23 bp):
ACATATGCATGTTCACATTCATC
Found at i:102682015 original size:22 final size:22
Alignment explanation
Indices: 102681988--102682109 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
102681978 GTTCACATTC
102681988 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
102682010 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
102682034 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
102682057 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
102682081 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
102682104 ATCACA
1 ATCACA
102682110 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:102682355 original size:141 final size:137
Alignment explanation
Indices: 102682067--102682348 Score: 327
Period size: 141 Copynumber: 2.0 Consensus size: 137
102682057 ATCACACATA
*
102682067 TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATT
1 TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATC
* *
102682132 ACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGACATTCGGCCT
66 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACA-T--A-AAT---CCT
* *
102682197 TATCACACAT--A-
124 AATCACATATAAAT
* *
102682208 TGCATGTTCACATTCATCACATTGGCCATTAGGCTTTATCACACATATGCATGTTCACATTCATC
1 TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATC
* * * ** *
102682273 ACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTCATCTCATAAAATCCTAAATCA
66 ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT-AAATCCT-AATC-
*
102682338 AAATATAAAT
128 ACATATAAAT
102682348 T
1 T
102682349 TTCATGTATT
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
135 3 0.02
136 3 0.02
137 4 0.03
138 2 0.02
139 2 0.02
140 2 0.02
141 105 0.87
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (137 bp):
TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATC
ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAAATCCTAATCACA
TATAAAT
Found at i:102685290 original size:16 final size:16
Alignment explanation
Indices: 102685269--102685300 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
102685259 ATTAAGAATG
102685269 TTATTAAATTATATTT
1 TTATTAAATTATATTT
102685285 TTATTAAATTATATTT
1 TTATTAAATTATATTT
102685301 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:102685567 original size:16 final size:16
Alignment explanation
Indices: 102685546--102685586 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
102685536 TGAATTACTT
*
102685546 ATTACAGCTCTATTCA
1 ATTACAGCCCTATTCA
*
102685562 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCA
102685578 ATTACAGCC
1 ATTACAGCC
102685587 AACCAAACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:102687310 original size:28 final size:28
Alignment explanation
Indices: 102687278--102687345 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 28
102687268 AGTAAGTCCA
102687278 CACACTTAGTGCT-TA-ATAGTCAAACTCG
1 CACACTTAGTGCTATACA-A-TCAAACTCG
*
102687306 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCG
102687334 CACACTTAGTGC
1 CACACTTAGTGC
102687346 CAATCTCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 33 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCG
Found at i:102690255 original size:21 final size:18
Alignment explanation
Indices: 102690221--102690275 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 18
102690211 TAGGAAGAAT
*
102690221 AAAGAAATGAA-AAAAAA
1 AAAGAAAAGAAGAAAAAA
* * *
102690238 AGAGAATATGAAGAAAAAC
1 AAAGAA-AAGAAGAAAAAA
102690257 AAAGAAAAGAA-AAAAAA
1 AAAGAAAAGAAGAAAAAA
102690274 AA
1 AA
102690276 GTGTTCATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 12 0.39
18 9 0.29
19 10 0.32
ACGTcount: A:0.78, C:0.02, G:0.15, T:0.05
Consensus pattern (18 bp):
AAAGAAAAGAAGAAAAAA
Found at i:102691469 original size:29 final size:29
Alignment explanation
Indices: 102691436--102691528 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
102691426 TGACGAGATT
* *
102691436 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
102691465 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
102691494 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
102691523 GGCACT
1 GGCACT
102691529 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:102691541 original size:29 final size:29
Alignment explanation
Indices: 102691436--102691541 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
102691426 TGACGAGATT
* *
102691436 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
102691465 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
102691494 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
102691523 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
102691542 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:102697183 original size:40 final size:40
Alignment explanation
Indices: 102697117--102697283 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
102697107 AAATTGAATG
* * *
102697117 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
102697156 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
102697196 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
102697236 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
102697276 ATATCCGG
1 ATATCCGG
102697284 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:102708385 original size:78 final size:78
Alignment explanation
Indices: 102708174--102708389 Score: 301
Period size: 78 Copynumber: 2.8 Consensus size: 78
102708164 AGAAAGCATG
* *
102708174 CGGGACTTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACTTTAGCCCGGATATAATACC
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTAGCCCGGATATAACACC
*
102708239 AGCATAAATGCCTT
65 AGCACAAATGCCTT
* * * * *
102708253 CGGGACTTATCCCGGATATAACACCAGCACAAATGCTTTCGGGA-CTTAGCCCGGATATAACACC
1 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCTGCGGGACCTTAGCCCGGATATAACACC
102708317 AGCACAAATGCCTT
65 AGCACAAATGCCTT
* *
102708331 CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGC-GGACCTCATGTCCGGATATA
1 CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTA-GCCCGGATATA
102708390 TTTCTAGTCT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
76 3 0.03
77 7 0.06
78 95 0.80
79 14 0.12
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTAGCCCGGATATAACACCA
GCACAAATGCCTT
Found at i:102708385 original size:117 final size:118
Alignment explanation
Indices: 102708174--102708389 Score: 323
Period size: 117 Copynumber: 1.8 Consensus size: 118
102708164 AGAAAGCATG
* *
102708174 CGGGACTTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACTTTAGCCCGGATATAATACC
1 CGGGACTTTAGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAATACC
* *
102708239 AGCATAAATGCCTTCGGGACTTATCCCGGATATAACACCAGCACAAATGCTTT
66 AGCATAAATGCCTGCGGGACTCATCCCGGATATAACACCAGCACAAATGCTTT
*
102708292 CGGGAC-TTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAATAC
1 CGGGACTTTAGCCCGGATATAACACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAATAC
*
102708355 CAGCATAAA-GCCTGC-GGACCTCATGTCCGGATATA
65 CAGCATAAATGCCTGCGGGA-CTCAT-CCCGGATATA
102708390 TTTCTAGTCT
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
115 3 0.03
116 9 0.10
117 61 0.69
118 16 0.18
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (118 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAATACC
AGCATAAATGCCTGCGGGACTCATCCCGGATATAACACCAGCACAAATGCTTT
Found at i:102708389 original size:39 final size:39
Alignment explanation
Indices: 102708174--102708367 Score: 293
Period size: 39 Copynumber: 5.0 Consensus size: 39
102708164 AGAAAGCATG
*
102708174 CGGGACTTTAGCCCGGATATAATACCAGCATAAA-GCCTG
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCCTT
102708213 CGGGACTTTAGCCCGGATATAATACCAGCATAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCCTT
* * * *
102708253 CGGGACTTATCCCGGATATAACACCAGCACAAATGCTTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
* *
102708292 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
102708331 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCT
102708368 GCGGACCTCA
Statistics
Matches: 145, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 4 0.03
39 131 0.90
40 10 0.07
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
Found at i:102717047 original size:194 final size:194
Alignment explanation
Indices: 102716718--102717115 Score: 755
Period size: 194 Copynumber: 2.1 Consensus size: 194
102716708 TCCCAGACCA
102716718 ATCAATGAAGCATCACTGTATATCACAAATTCTTTACACAATTCGAGTTGTACCAATACTGGAGC
1 ATCAATGAAGCATCACTGTATATCACAAATTCTTTACACAATTCGAGTTGTACCAATACTGGAGC
102716783 TTCAGTCAACAAAGTTTTCAACTGATCAAAATTGTTCTGACACTTTTAAAACCACACAAATTTCA
66 TTCAGTCAACAAAGTTTTCAACTGATCAAAATTGTTCTGACACTTTTAAAACCACACAAATTTCA
*
102716848 CATTTTTTTGAAGCAATTTTGTCAACAGAGTCGCAATCATCAAAAAACCTTTTACCAACCTTTT
131 CATTTTTTTGAAGCAATTTTGTCAACAGAGTCGCAATCATCAAAAAACCTTTTACCAACCTTCT
*
102716912 ATCAATGAAGCATCACTGTATATCACAAATTCTTTACACAATTCGGGTTGTACCAATACTGGAGC
1 ATCAATGAAGCATCACTGTATATCACAAATTCTTTACACAATTCGAGTTGTACCAATACTGGAGC
102716977 TTCAGTCAACAAAGTTTTCAACTGATCAAAATTGTTCTGACACTTTTAAAACCACACAAATTTCA
66 TTCAGTCAACAAAGTTTTCAACTGATCAAAATTGTTCTGACACTTTTAAAACCACACAAATTTCA
*
102717042 CATTTTTTTGAAGCAATTTTGTCAACAGAGTCGCAATCATCAAAAAACCTTTTACCAATCTTCT
131 CATTTTTTTGAAGCAATTTTGTCAACAGAGTCGCAATCATCAAAAAACCTTTTACCAACCTTCT
102717106 AT-AAT-AAGCA
1 ATCAATGAAGCA
102717116 GCAATTCCCA
Statistics
Matches: 201, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
192 5 0.02
193 3 0.01
194 193 0.96
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (194 bp):
ATCAATGAAGCATCACTGTATATCACAAATTCTTTACACAATTCGAGTTGTACCAATACTGGAGC
TTCAGTCAACAAAGTTTTCAACTGATCAAAATTGTTCTGACACTTTTAAAACCACACAAATTTCA
CATTTTTTTGAAGCAATTTTGTCAACAGAGTCGCAATCATCAAAAAACCTTTTACCAACCTTCT
Done.