Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 336 of 770
Found at i:102723497 original size:40 final size:40
Alignment explanation
Indices: 102723331--102723498 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
102723321 CATTTGAATG
* * *
102723331 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
102723371 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
102723411 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
102723451 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
102723491 GTATCCGG
1 ATATCCGG
102723499 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:102731475 original size:40 final size:40
Alignment explanation
Indices: 102731308--102731459 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
102731298 CATTTGAATG
* * * *
102731308 ATATCCGGGCTAAGTCCCGCAGG-AATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAA-TTGTGCAAGTTG-TT
* * *
102731348 ATGTTCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTGTT
* ***
102731388 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGTT
* *
102731428 AAATCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
102731460 TTGTGGTTGT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.93
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGTT
Found at i:102732996 original size:30 final size:29
Alignment explanation
Indices: 102732962--102733025 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
102732952 ATGAATCGAA
*
102732962 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGAACTAAGTGTGCGATTT-AACT
102732992 AGCTTTGGAACTAAGTGTGCGATTTAACT
1 AGCTTTGGAACTAAGTGTGCGATTTAACT
102733021 AGCTT
1 AGCTT
102733026 CAATTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (29 bp):
AGCTTTGGAACTAAGTGTGCGATTTAACT
Found at i:102735388 original size:50 final size:51
Alignment explanation
Indices: 102735326--102735452 Score: 166
Period size: 51 Copynumber: 2.5 Consensus size: 51
102735316 CATGCGACTG
* * *
102735326 TAGTAGCTTGCACTTAGTACAACACACGTGACCAC-ACCATCTAATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCACAACCATCGAATACACA
* *** **
102735376 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCACAACCATCGAATACACA
102735427 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
102735453 TGCAACCTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 32 0.48
51 35 0.52
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCACAACCATCGAATACACA
Found at i:102738641 original size:40 final size:40
Alignment explanation
Indices: 102738539--102738722 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
102738529 AAATTGAATG
* * * * *
102738539 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
102738579 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
102738619 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
102738659 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
102738699 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
102738723 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:102746763 original size:40 final size:40
Alignment explanation
Indices: 102746661--102746844 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
102746651 AAATTGAATG
* * * * *
102746661 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
102746701 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
102746741 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
102746781 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
102746821 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
102746845 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:102755605 original size:93 final size:93
Alignment explanation
Indices: 102755493--102755664 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
102755483 GCCCATAAGT
* *
102755493 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102755558 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
102755586 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102755651 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
102755665 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:102755660 original size:46 final size:46
Alignment explanation
Indices: 102755485--102755660 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
102755475 TGTAACCCGC
* * **
102755485 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
102755531 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
102755581 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
102755624 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
102755661 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:102758088 original size:30 final size:30
Alignment explanation
Indices: 102758044--102758132 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
102758034 CAAAGATAAC
102758044 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
102758073 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
102758103 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
102758133 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:102758092 original size:15 final size:15
Alignment explanation
Indices: 102758044--102758123 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
102758034 CAAAGATAAC
*
102758044 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
102758058 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
102758073 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
102758088 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
102758103 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
102758118 AAGAAA
1 AAGAAA
102758124 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:102758132 original size:15 final size:15
Alignment explanation
Indices: 102758055--102758132 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
102758045 AGAAAACCGA
102758055 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
102758070 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
102758084 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
102758099 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
102758115 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
102758130 ATA
1 ATA
102758133 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:102763760 original size:80 final size:80
Alignment explanation
Indices: 102763676--102763824 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
102763666 TATGGTAACC
* * * *
102763676 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
102763740 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
102763756 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
102763821 CCGG
66 CCGG
102763825 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:102763766 original size:40 final size:38
Alignment explanation
Indices: 102763717--102763824 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
102763707 ATCACGATTT
*
102763717 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
102763757 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
102763797 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
102763825 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:102769752 original size:18 final size:18
Alignment explanation
Indices: 102769724--102769767 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
102769714 GCCTGTAATG
*
102769724 TAAAC-AATAATAATAGA
1 TAAACAAATAATAACAGA
*
102769741 TAAACAAATAATAACAGG
1 TAAACAAATAATAACAGA
102769759 TAAACAAAT
1 TAAACAAAT
102769768 TCGAAGAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.64, C:0.09, G:0.07, T:0.20
Consensus pattern (18 bp):
TAAACAAATAATAACAGA
Found at i:102785624 original size:122 final size:122
Alignment explanation
Indices: 102785405--102785624 Score: 370
Period size: 122 Copynumber: 1.8 Consensus size: 122
102785395 TGCTCATTAT
* *
102785405 TCTATCATTTAATTTGTATTCTTAGGTTAGTTATCATACATTTCATGTTAAATCGAGTTCTTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTCCATGTTAAATCGAGTTCTTAGG
*
102785470 AAAACCTCATACCCATGACATTACTATGCTCATTCTCATGCTATTACCATGCCAATG
66 AAAACCTCATACCCATAACATTACTATGCTCATTCTCATGCTATTACCATGCCAATG
* *
102785527 TCTATCATTTAATTTGCATTCTTAGGTTTGTTATCATACATTCCATGTTAAATCGAGTTTTTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTCCATGTTAAATCGAGTTCTTAGG
*
102785592 AAAACAC-CATACCCATAACATTACTATTCTCAT
66 AAAAC-CTCATACCCATAACATTACTATGCTCAT
102785625 GGTTCTTTTG
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
122 90 0.99
123 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (122 bp):
TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTCCATGTTAAATCGAGTTCTTAGG
AAAACCTCATACCCATAACATTACTATGCTCATTCTCATGCTATTACCATGCCAATG
Found at i:102796043 original size:22 final size:22
Alignment explanation
Indices: 102796018--102796068 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
102796008 CCAACCTAAA
102796018 TATGGCTCTGTGATATATTGAT
1 TATGGCTCTGTGATATATTGAT
* *
102796040 TATGGCTCTGTGCTATGTTGAT
1 TATGGCTCTGTGATATATTGAT
102796062 TATGGCT
1 TATGGCT
102796069 TTGTCCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.18, C:0.12, G:0.25, T:0.45
Consensus pattern (22 bp):
TATGGCTCTGTGATATATTGAT
Found at i:102798499 original size:22 final size:21
Alignment explanation
Indices: 102798461--102798503 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
102798451 TATTCCCCAC
* *
102798461 AGGTAGTGTAGGGTTGGATGG
1 AGGTAGTGCAGGATTGGATGG
102798482 AGGTAAGTGCAGGATTGGATGG
1 AGGT-AGTGCAGGATTGGATGG
102798504 GTTATCATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.23, C:0.02, G:0.49, T:0.26
Consensus pattern (21 bp):
AGGTAGTGCAGGATTGGATGG
Found at i:102798582 original size:32 final size:32
Alignment explanation
Indices: 102798530--102798618 Score: 151
Period size: 32 Copynumber: 2.8 Consensus size: 32
102798520 CATATGGGTT
* *
102798530 TGATATTGAAATGGGCTAGGCCCAACTAATAC
1 TGATTTTGAGATGGGCTAGGCCCAACTAATAC
*
102798562 TGATTTTGAGTTGGGCTAGGCCCAACTAATAC
1 TGATTTTGAGATGGGCTAGGCCCAACTAATAC
102798594 TGATTTTGAGATGGGCTAGGCCCAA
1 TGATTTTGAGATGGGCTAGGCCCAA
102798619 TTGAGACTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (32 bp):
TGATTTTGAGATGGGCTAGGCCCAACTAATAC
Found at i:102800404 original size:18 final size:20
Alignment explanation
Indices: 102800368--102800414 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
102800358 AGTTGTAAGT
102800368 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
102800388 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
102800407 ATGATATA
1 AT-ATATA
102800415 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:102800893 original size:50 final size:50
Alignment explanation
Indices: 102800767--102801211 Score: 398
Period size: 50 Copynumber: 8.8 Consensus size: 50
102800757 ATTGTGAGAA
* * *
102800767 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* * *
102800819 CACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *** * * *
102800869 CGCATGTGTAGCACTAAATGCAGGCTACTATACGTACTC-GATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGT
* * *
102800920 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
102800970 CACATGTGTAGTACTAAGTGCATGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * *
102801020 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* * * *
102801071 CACGA-GTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATCA-GT
1 CAC-ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * * *
102801121 CACGTGTGTAGTACTAAGGGCAGGCTACTATGTATACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
102801171 CGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
102801212 GAGCTTCGGT
Statistics
Matches: 312, Mismatches: 69, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
48 3 0.01
49 6 0.02
50 198 0.63
51 74 0.24
52 31 0.10
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:102800952 original size:101 final size:100
Alignment explanation
Indices: 102800818--102801211 Score: 388
Period size: 101 Copynumber: 3.9 Consensus size: 100
102800808 CAGTTTTAGG
* * * *
102800818 TCACGTGTGCAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGCAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
* ** *
102800883 TAAATGCAGGCTACTATACGTACTC-GATAGTTTCGA
66 TAAGTGCAGGCTACTACGCGTACTCAGAT-G-ATCGA
* *
102800919 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
* * * *
102800984 TAAGTGCATGCTACTACGTGTAC-CAGATTGATAGG
66 TAAGTGCAGGCTACTACGCGTACTCAGA-TGATCGA
* * * * * * * *
102801019 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCACGA-GTGTAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCAC-ATGTGTAG
* *
102801082 TACTAAGTGTAGGCTACTACGTGTA-TCAGATGGATC-A
63 TACTAAGTGCAGGCTACTACGCGTACTCAGAT-GATCGA
* * * * * *
102801119 GTCACGTGTGTAGTACTAAGGGCAGGCTACTATGTATACCAGATTGATAGGTCGCATGTATAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTA
*
102801184 CTAAGTGCAGGCTACTATGCGTAC-CAGA
65 CTAAGTGCAGGCTACTACGCGTACTCAGA
102801212 GAGCTTCGGT
Statistics
Matches: 239, Mismatches: 43, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
99 2 0.01
100 75 0.31
101 158 0.66
102 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGCGTACTCAGATGATCGA
Found at i:102801047 original size:151 final size:151
Alignment explanation
Indices: 102800771--102801208 Score: 617
Period size: 151 Copynumber: 2.9 Consensus size: 151
102800761 TGAGAACACA
* * * * * * *
102800771 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGCAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TG-GTTAGGTCACGTGTGTAGTACTAA
* * * * *
102800836 GTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGCACTAAATGCAGGCTACTATA
64 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
* **
102800901 CGTACTCGATAGTTTCGATCACG
129 CGTACCCGATAACTTCGATCACG
*
102800924 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
*
102800989 GCATGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
*
102801054 TACCCGTTAACTTCGATCACG
131 TACCCGATAACTTCGATCACG
* * *
102801075 AGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATCA-GTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAG
* * * *
102801139 GGCAGGCTACTATGTATACCAGATTGATAGGTCGCATGTATAGTACTAAGTGCAGGCTACTATGC
65 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
102801204 GTACC
130 GTACC
102801209 AGAGAGCTTC
Statistics
Matches: 257, Mismatches: 27, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
151 221 0.86
152 3 0.01
153 33 0.13
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCCGATAACTTCGATCACG
Found at i:102801431 original size:16 final size:16
Alignment explanation
Indices: 102801410--102801441 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
102801400 AGAATGGAGT
102801410 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
102801426 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
102801442 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:102801602 original size:126 final size:127
Alignment explanation
Indices: 102801429--102801682 Score: 492
Period size: 126 Copynumber: 2.0 Consensus size: 127
102801419 TATGTAAAAG
102801429 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
1 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
102801494 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTAT-ATTTT
66 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
102801555 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
1 TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
*
102801620 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGATATTAAAGATTAATGAGTATAATTTT
66 TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
102801682 T
1 T
102801683 CATAAAAGAA
Statistics
Matches: 126, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
126 120 0.95
127 6 0.05
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.35
Consensus pattern (127 bp):
TGAAATTTTGTAATAAAACAATTTTGGATAGCAGTAGTTGTGTGACTTTGAAAAATCACCAAAAA
TGGTATAAATTGAATTAGAGGTTGAATAAGATATGAAATTAAAGATTAATGAGTATAATTTT
Found at i:102802230 original size:180 final size:180
Alignment explanation
Indices: 102801904--102802231 Score: 473
Period size: 180 Copynumber: 1.8 Consensus size: 180
102801894 GTACCATAAG
* ***
102801904 ATAAATAATTTTTAGTGAAGAGAGGTCGAAACTATTGGATAGTGAAATAGGGGTAACTTTAATGA
1 ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTAACTTTAATGA
* * * * *
102801969 ATAAAATGTACTAATTTGCTAAACTAAAAATTATGAAAATTTTATGGTAAGAATATATGTGAGTG
66 ATAAAATGTACTAATTGGATAAACTAAAAATTATGAAAATTTTATGGTAAGAAGATATATGAGTC
* *
102802034 TAATTTTTGGGAAAATTAGTTTCTCTCAATTTGGACTCCTGTGCCATGAA
131 TAATTTATGAGAAAATTAGTTTCTCTCAATTTGGACTCCTGTGCCATGAA
102802084 ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTATA-TTTAATG
1 ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTA-ACTTTAATG
* * *
102802148 AATAAACTGTACTAATTGGATAAA-TAAAAAATTCTTAAAATTTTATGGTAAGAAGATATATGAG
65 AATAAAATGTACTAATTGGATAAACT-AAAAATTATGAAAATTTTATGGTAAGAAGATATATGAG
*
102802212 TCTAGTTTCAT-AGAAAATTA
129 TCTAATTT-ATGAGAAAATTA
102802232 ACAGATCTTA
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
179 1 0.01
180 127 0.98
181 2 0.02
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (180 bp):
ATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGGTAACTTTAATGA
ATAAAATGTACTAATTGGATAAACTAAAAATTATGAAAATTTTATGGTAAGAAGATATATGAGTC
TAATTTATGAGAAAATTAGTTTCTCTCAATTTGGACTCCTGTGCCATGAA
Found at i:102811901 original size:56 final size:56
Alignment explanation
Indices: 102811841--102811977 Score: 222
Period size: 56 Copynumber: 2.4 Consensus size: 56
102811831 TCCTAGATAG
* *
102811841 GGTCTTACTCGCACACATATATC-AGAGTCACATTTCGATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGA-AGTCACATATCGAAGCCAACGTATAAAATGT
102811897 GGTCTTACTCGCACACATATATCGAAGTCACATATCGAAGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGAAGCCAACGTATAAAATGT
* *
102811953 TGTCTTACTCACACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
102811978 TGCCATGGTC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
56 75 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGAAGCCAACGTATAAAATGT
Found at i:102812220 original size:22 final size:22
Alignment explanation
Indices: 102812195--102812241 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
102812185 TAAAATTAAG
102812195 TACGTCTATTTGCTTATAAACT
1 TACGTCTATTTGCTTATAAACT
102812217 TACGTCTATTTGCTTATAAACT
1 TACGTCTATTTGCTTATAAACT
102812239 TAC
1 TAC
102812242 CTCGGACGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (22 bp):
TACGTCTATTTGCTTATAAACT
Found at i:102813685 original size:42 final size:42
Alignment explanation
Indices: 102813584--102813755 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 42
102813574 AGCTCATACA
* * *
102813584 ATGCCAATGTCCCAGATATGGTCTTACATGTAGTCAAATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
*
102813627 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCAAATAT-G
1 ATGCCA-TGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* *
102813669 ATGCCGATGTCCCAGACATGGTATTACACGTAAAT--AATAAGTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATG-AAATCAAAT-A-TCG
* * * * *
102813713 ATGCCAATGTTCCAGACGTGGTCTTACACGAAAACACATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
102813756 GATCCTATGT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
41 3 0.03
42 28 0.26
43 47 0.44
44 28 0.26
45 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:102820654 original size:45 final size:46
Alignment explanation
Indices: 102820557--102820665 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
102820547 AGCTTAAGAT
*
102820557 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGCATATGTGATAAGGC
*
102820604 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGCATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGCATATGTGATAAGGC
*
102820649 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
102820666 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGCATATGTGATAAGGC
Found at i:102821476 original size:2 final size:2
Alignment explanation
Indices: 102821469--102821495 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
102821459 AATTAAGTTT
102821469 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
102821496 TCATGTATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102832528 original size:25 final size:25
Alignment explanation
Indices: 102832499--102832546 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
102832489 TTGTAATATG
* *
102832499 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
102832524 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
102832547 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:102832739 original size:25 final size:25
Alignment explanation
Indices: 102832679--102832773 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
102832669 GAGGAAGTGC
*
102832679 AAAAGGGCTATGCCCCAG-TTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
102832703 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
102832728 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCG
102832753 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGC-TTTGCCCCAGTT
102832774 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
24 16 0.26
25 33 0.54
26 12 0.20
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:102832786 original size:25 final size:25
Alignment explanation
Indices: 102832679--102832786 Score: 100
Period size: 25 Copynumber: 4.4 Consensus size: 25
102832669 GAGGAAGTGC
*
102832679 AAAAGGGC-TATGCCCCAG-TTATCG
1 AAAAGGGCTTTTGCCCCAGTTTAT-G
* *
102832703 AAAAGGGC-TTTGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTA-TG
*
102832728 AAAAGGG-TTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTAT-G
*
102832753 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATG
102832777 AAAAGAGGCT
1 AAAAG-GGCT
102832787 AGGCCTCCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
24 21 0.30
25 39 0.55
26 11 0.15
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATG
Found at i:102833028 original size:31 final size:31
Alignment explanation
Indices: 102832992--102833069 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
102832982 ATTGTTGCAG
* *
102832992 TAAAGGCTTCTGCCTAGTGATATGAATAATGA
1 TAAAGGCTTCGGCCCAGTGATATGAATAAT-A
102833024 -AAAGGCTTCGGCCCAGTGATATGAATAATA
1 TAAAGGCTTCGGCCCAGTGATATGAATAATA
102833054 TAAAGGCTTCGGCCCA
1 TAAAGGCTTCGGCCCA
102833070 TTATATGTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
30 1 0.02
31 42 0.98
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (31 bp):
TAAAGGCTTCGGCCCAGTGATATGAATAATA
Found at i:102840800 original size:26 final size:26
Alignment explanation
Indices: 102840705--102840800 Score: 92
Period size: 26 Copynumber: 3.8 Consensus size: 26
102840695 GAGAAAGTGC
*
102840705 AAAAGGG-TTATGCCCCAG-TTACCGA
1 AAAAGGGCTTTTGCCCCAGTTTACC-A
* *
102840730 AAAA-GGC-TTTGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCA
* * * *
102840754 AATAGGGCTTTTGACCTAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
102840780 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
102840801 ATTAAAAGAG
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
24 13 0.23
25 12 0.21
26 32 0.56
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCA
Found at i:102842303 original size:79 final size:79
Alignment explanation
Indices: 102842194--102842415 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 79
102842184 TACTCGTTCA
* *
102842194 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
102842259 TTAGTAACTCGCACC
65 TTAGTAACTCGCACC
**
102842274 AATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCGGA
1 AATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
*
102842336 TTTAGTAACTCGCACG
64 TTTAGTAACTCGCACC
* * * * *
102842352 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
102842416 CATCATTCGA
Statistics
Matches: 123, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 35 0.28
79 60 0.49
80 28 0.23
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
TAGTAACTCGCACC
Found at i:102842306 original size:39 final size:40
Alignment explanation
Indices: 102842192--102842415 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
102842182 GCTACTCGTT
*
102842192 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
102842232 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
102842272 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
102842311 CAAATGCCTTC-GGATCTTAG-TCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
102842350 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
102842391 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
102842416 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 69 0.42
40 80 0.49
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:102850582 original size:40 final size:39
Alignment explanation
Indices: 102850343--102850582 Score: 267
Period size: 40 Copynumber: 6.1 Consensus size: 39
102850333 CGGAGTTTAA
** *
102850343 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* *
102850383 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* *
102850423 CCGGATTTAGTAACTCGCACCAATGCCTTCGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
102850461 CCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTA--
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* * *
102850498 CCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
102850538 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
102850578 CCGGA
1 CCGGA
102850583 CATCATTCGA
Statistics
Matches: 176, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
37 30 0.17
38 41 0.23
39 7 0.04
40 88 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:102855168 original size:24 final size:24
Alignment explanation
Indices: 102855141--102855368 Score: 363
Period size: 24 Copynumber: 9.6 Consensus size: 24
102855131 CTTATTATGT
* * *
102855141 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
102855165 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
102855189 TCGCACACATAGTG-CATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
102855212 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
102855236 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
102855260 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
102855284 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
102855308 TCGCACACATAGTGCCATAG--AA
1 TCGCACACATAGTGCCATAGTAAA
*
102855330 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
102855354 TCGCACACATAGTGC
1 TCGCACACATAGTGC
102855369 ATTTGAGATA
Statistics
Matches: 196, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
22 22 0.11
23 21 0.11
24 153 0.78
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:102855310 original size:72 final size:71
Alignment explanation
Indices: 102855141--102855368 Score: 370
Period size: 71 Copynumber: 3.2 Consensus size: 71
102855131 CTTATTATGT
* * * * *
102855141 TCGCACACATAGAGCTATAGCAAATCGCACACATAGTGCTATAGCAAATCGCACACATAGTG-CA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAG-GAATCGCACACATAGTGCCA
*
102855205 TAGTAAA
65 TAGTGAA
102855212 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAG-GAATCGCACACATAGTGCCA
102855277 TAGTGAA
65 TAGTGAA
102855284 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATA-GAATCGCACACATAGTGCCAT
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGGAATCGCACACATAGTGCCAT
102855348 AGTGAA
66 AGTGAA
102855354 TCGCACACATAGTGC
1 TCGCACACATAGTGC
102855369 ATTTGAGATA
Statistics
Matches: 149, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
70 42 0.28
71 56 0.38
72 51 0.34
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (71 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGGAATCGCACACATAGTGCCAT
AGTGAA
Found at i:102862905 original size:24 final size:23
Alignment explanation
Indices: 102862878--102863129 Score: 288
Period size: 24 Copynumber: 10.6 Consensus size: 23
102862868 ACCGAATGTG
* **
102862878 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
102862902 GCACACATAGTGCATAGTAAATC
1 GCACACATAGTGCTTAGTAAATC
*
102862925 GCACACATAGTGCTATAGCAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
102862949 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
102862973 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
102862997 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
* *
102863021 GCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATC
*
102863045 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
* *
102863069 GCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATC
* *
102863093 GCACACATAGTGCCATAGTGAATC
1 GCACACATAGTG-CTTAGTAAATC
102863117 GCACACATAGTGC
1 GCACACATAGTGC
102863130 ATTTGAGATA
Statistics
Matches: 215, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
23 16 0.07
24 198 0.92
25 1 0.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:102862985 original size:48 final size:48
Alignment explanation
Indices: 102862900--102863129 Score: 408
Period size: 48 Copynumber: 4.8 Consensus size: 48
102862890 CTTATTATGT
* *
102862900 TCGCACACATAGTG-CATAGTAAATCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
102862947 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
*
102862995 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
*
102863043 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
*
102863091 TCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
102863130 ATTTGAGATA
Statistics
Matches: 178, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 14 0.08
48 164 0.92
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (48 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAA
Found at i:102863020 original size:72 final size:72
Alignment explanation
Indices: 102862900--102863129 Score: 417
Period size: 72 Copynumber: 3.2 Consensus size: 72
102862890 CTTATTATGT
* *
102862900 TCGCACACATAGTG-CATAGTAAATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
*
102862964 TAGTAAA
66 TAGTGAA
102862971 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
102863036 TAGTGAA
66 TAGTGAA
*
102863043 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
102863108 TAGTGAA
66 TAGTGAA
102863115 TCGCACACATAGTGC
1 TCGCACACATAGTGC
102863130 ATTTGAGATA
Statistics
Matches: 154, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
71 14 0.09
72 140 0.91
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (72 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTGAA
Found at i:102866570 original size:16 final size:15
Alignment explanation
Indices: 102866540--102866578 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
102866530 TATGCAAAGT
* *
102866540 TAATAATAATTAATA
1 TAATTATAATGAATA
102866555 TATATTATAATGAATA
1 TA-ATTATAATGAATA
102866571 TAATTATA
1 TAATTATA
102866579 TAGTAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TAATTATAATGAATA
Found at i:102866580 original size:22 final size:19
Alignment explanation
Indices: 102866542--102866579 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
102866532 TGCAAAGTTA
102866542 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
102866561 ATAATGAATATAAT-TATAT
1 ATAAT-AAT-TAATATATAT
102866580 AGTAGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:102870862 original size:18 final size:20
Alignment explanation
Indices: 102870799--102870850 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
102870789 CAGGCTGAGG
102870799 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
102870819 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
102870839 ACACGGGCGTGT
1 ACACGGGCGTGT
102870851 GTAACCACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:102881952 original size:40 final size:40
Alignment explanation
Indices: 102881786--102881970 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
102881776 TTCGAATGAT
* * *
102881786 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
102881826 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
102881866 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
102881906 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
102881947 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
102881971 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:102881964 original size:80 final size:80
Alignment explanation
Indices: 102881786--102881973 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
102881776 TTCGAATGAT
* *
102881786 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
102881851 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
102881866 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
102881927 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
102881947 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
102881974 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:102900747 original size:25 final size:24
Alignment explanation
Indices: 102900703--102900779 Score: 91
Period size: 25 Copynumber: 3.1 Consensus size: 24
102900693 GCCTAGCCTC
* *
102900703 TTTTAATAACTGGGGTAAAGCCCT
1 TTTTGATAACTGGGGCAAAGCCCT
102900727 TTTTGATAACCTGGGGCAAAGCCCT
1 TTTTGATAA-CTGGGGCAAAGCCCT
* * *
102900752 TTTCGGTAAATTGGGGCAAAGCCCT
1 TTTTGAT-AACTGGGGCAAAGCCCT
102900777 TTT
1 TTT
102900780 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 8 0.17
25 36 0.78
26 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.32
Consensus pattern (24 bp):
TTTTGATAACTGGGGCAAAGCCCT
Found at i:102901014 original size:27 final size:27
Alignment explanation
Indices: 102900984--102901090 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
102900974 GGGGCAAAAT
* * *
102900984 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
102901011 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
102901038 AGTAATTCTACCCTAAAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102901065 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
102901091 TGATATTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:102901150 original size:27 final size:26
Alignment explanation
Indices: 102901057--102901261 Score: 180
Period size: 27 Copynumber: 7.7 Consensus size: 26
102901047 ACCCTAAAAA
* * **
102901057 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTTTACAAT-CAGG
*
102901084 GGTATTTTGAT-ATTTTACAAATC-GAG
1 GGTATTTTGGTAATTTTAC-AATCAG-G
* *** *
102901110 AGTATTTCAATAATTTCACAGATCAGG
1 GGTATTTTGGTAATTTTACA-ATCAGG
*
102901137 GGTATTTTGGTAATTTTACAAGCTAGG
1 GGTATTTTGGTAATTTTACAATC-AGG
*
102901164 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAATC-AGG
* *
102901191 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTAC-AATCAGG
* *
102901218 GGTATTTTGGTAATTTTACTGATCAAG
1 GGTATTTTGGTAATTTTAC-AATCAGG
102901245 GGTATTTTGGTAATTTT
1 GGTATTTTGGTAATTTT
102901262 GTAAACCAAT
Statistics
Matches: 148, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.01
26 19 0.13
27 124 0.84
28 4 0.03
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAATCAGG
Found at i:102901178 original size:54 final size:54
Alignment explanation
Indices: 102901080--102901288 Score: 217
Period size: 54 Copynumber: 3.9 Consensus size: 54
102901070 TTCTACCCTA
* * * *** *
102901080 CAGGGGTATTTTGAT-ATTTTACAAATC-GAGAGTATTTCAATAATTTCACAGAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAGAT
* * *
102901133 CAGGGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACA-AA
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAGAT
* *
102901186 CTAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGAT
1 C-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAGAT
* ** ** *
102901241 CAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
102901289 GTAAATCGAG
Statistics
Matches: 130, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
53 16 0.12
54 111 0.85
55 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAGAT
Found at i:102901275 original size:27 final size:27
Alignment explanation
Indices: 102901080--102901288 Score: 197
Period size: 27 Copynumber: 7.8 Consensus size: 27
102901070 TTCTACCCTA
* *
102901080 CAGGGGTATTTTGAT-ATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *** * * *
102901106 C-GAGAGTATTTCAATAATTTCACAGAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
*
102901133 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
102901160 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
102901187 TAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
102901214 CAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* **
102901241 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
102901268 CAATGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
102901289 GTAAATCGAG
Statistics
Matches: 151, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
25 1 0.01
26 10 0.07
27 139 0.92
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:102901302 original size:81 final size:81
Alignment explanation
Indices: 102901083--102901288 Score: 236
Period size: 81 Copynumber: 2.6 Consensus size: 81
102901073 TACCCTACAG
* * * * * * * * *
102901083 GGGTATTTTGAT-ATTTTACAAATCGAGAGTATTTCAATAATTTCACAGATCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
*
102901147 TAATTTTACAAGCTAG
66 TAATTTTACAAGCTAA
* *
102901163 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
* *
102901228 TAATTTTAC-TGATCAA
66 TAATTTTACAAGCT-AA
** *
102901244 GGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
102901289 GTAAATCGAG
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 13 0.12
81 92 0.88
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTTACAAGCTAA
Found at i:102901311 original size:81 final size:81
Alignment explanation
Indices: 102901163--102901313 Score: 178
Period size: 81 Copynumber: 1.9 Consensus size: 81
102901153 TACAAGCTAG
* * ****
102901163 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAACGG
102901228 TAATTTTACTGATCAA
66 TAATTTTACTGATCAA
** * ** *
102901244 GGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAACG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAAAACG
102901308 GTAATT
65 GTAATT
102901314 CTATAAATTG
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
80 1 0.02
81 56 0.98
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAAACGG
TAATTTTACTGATCAA
Found at i:102901339 original size:81 final size:81
Alignment explanation
Indices: 102901254--102901464 Score: 217
Period size: 81 Copynumber: 2.6 Consensus size: 81
102901244 GGGTATTTTG
* * *** * *
102901254 GTAATTTTGTAAACCAATGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
* *
102901319 AATTGAGGGTAAAATA
66 AATCGAGGATAAAATA
* * * * * *
102901335 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
**
102901400 AATCGAGGATAAAACG
66 AATCGAGGATAAAATA
* * * *
102901416 GTAATTCTATAAATCGAGGGTAAAACT-GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAACCAAGGGTAAAA-TAGTAATTCTATAAATCGAGGGTA
102901465 CTTTGGTAAT
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 108 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGATAAAATA
Found at i:102901475 original size:27 final size:27
Alignment explanation
Indices: 102901281--102901464 Score: 262
Period size: 27 Copynumber: 6.8 Consensus size: 27
102901271 TGGTATTTTA
* *
102901281 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
102901308 GTAATTCTATAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
102901335 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
102901362 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
102901389 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
102901416 GTAATTCTATAAATCGAGGGTAAAACT-
1 GTAATTCTGTAAATCGAGGGTAAAA-TG
102901443 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
102901465 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 18, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:102901475 original size:54 final size:54
Alignment explanation
Indices: 102901279--102901464 Score: 311
Period size: 54 Copynumber: 3.4 Consensus size: 54
102901269 AATGGTATTT
*
102901279 TAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
*
102901333 TAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
* * *
102901387 TGGTAATTCTGTAAATCGAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
102901441 CT-GTAATTCTGTAAATCGAGGGTA
1 -TAGTAATTCTGTAAATCGAGGGTA
102901465 CTTTGGTAAT
Statistics
Matches: 124, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
54 123 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (54 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
Found at i:102901502 original size:81 final size:81
Alignment explanation
Indices: 102901281--102901491 Score: 217
Period size: 81 Copynumber: 2.6 Consensus size: 81
102901271 TGGTATTTTA
* * * ** * ** * *
102901281 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGACAAAACAGTAATTCTATA
102901346 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* ** * *
102901362 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGATAAAACGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGACAAAACAGTAATTCTATA
102901427 AATCGAGGGTAAAACT-
66 AATCGAGGGTAAAA-TG
* *** * *
102901443 GTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTCCAAATTGAGGACA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGACA
102901492 TTTCAGTAAT
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 108 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCCAAATCGAGGACAAAACAGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:102902515 original size:36 final size:36
Alignment explanation
Indices: 102902468--102902541 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
102902458 TCCTACTATC
*
102902468 ACTATCACACTTCAACTAGAACTTGAAACATCTCAT
1 ACTATCACACTTCAACTAGAACTTGAAACATCTAAT
102902504 ACTATCACACTTCAACTAGAACTTGAAACATCTAAT
1 ACTATCACACTTCAACTAGAACTTGAAACATCTAAT
102902540 AC
1 AC
102902542 ATACGACACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.27, G:0.05, T:0.27
Consensus pattern (36 bp):
ACTATCACACTTCAACTAGAACTTGAAACATCTAAT
Found at i:102903767 original size:25 final size:25
Alignment explanation
Indices: 102903733--102903802 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
102903723 CTCTTTTAAT
*
102903733 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
102903758 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
102903783 AACTGGGGCAAAGTCCTTTT
1 AACTGGGGCAAAGCCCTTTT
102903803 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:102904037 original size:27 final size:27
Alignment explanation
Indices: 102904007--102904142 Score: 200
Period size: 27 Copynumber: 5.0 Consensus size: 27
102903997 GGGGCAAAAT
* * *
102904007 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102904034 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
102904061 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
102904088 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
102904115 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
102904142 G
1 G
102904143 ATATTTTACA
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:102904271 original size:27 final size:26
Alignment explanation
Indices: 102904079--102904311 Score: 153
Period size: 27 Copynumber: 8.7 Consensus size: 26
102904069 TACCCTATAG
* **
102904079 GGGTATTTTGGTAATTCTACCCTACAA
1 GGGTATTTTGGTAATTTTA-CAAACAA
** * **
102904106 GGGTATTTCAGTAATTCTACCCTACAA
1 GGGTATTTTGGTAATTTTA-CAAACAA
* * *
102904133 GGGTATTTCGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAA-CAA
* * * * * *
102904159 GAGTATTTCGATAATTTCACAGATCAG
1 GGGTATTTTGGTAATTTTACA-AACAA
102904186 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
* *
102904213 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAA-CAA
* * *
102904240 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTAC-AAACAA
* **
102904267 TGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
*
102904294 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
102904312 GTAAATCGAG
Statistics
Matches: 166, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
25 2 0.01
26 20 0.12
27 142 0.86
28 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAA
Found at i:102904272 original size:54 final size:54
Alignment explanation
Indices: 102904077--102904311 Score: 172
Period size: 54 Copynumber: 4.4 Consensus size: 54
102904067 TCTACCCTAT
* ** * * **
102904077 AGGGGTATTTTGGTAATTCTACCCTA-CAAGGGTATTTCAGTAATTCTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACCAAGGGTATTTTAGTAATTTTA-CAAACC
* * * * * * * * * *
102904131 AAGGGTATTTCGAT-ATTTTACAAATCGAGAGTA-TTTCGATAATTTCACAGATC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAACC
102904184 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACC
** * * * * **
102904238 AGGGGTATTTTGGTAATTTTACTGATCGATGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACC
* *
102904292 AAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
102904312 GTAAATCGAG
Statistics
Matches: 142, Mismatches: 34, Indels: 10
0.76 0.18 0.05
Matches are distributed among these distances:
52 7 0.05
53 29 0.20
54 102 0.72
55 4 0.03
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACC
Found at i:102904320 original size:54 final size:54
Alignment explanation
Indices: 102904130--102904325 Score: 173
Period size: 54 Copynumber: 3.6 Consensus size: 54
102904120 TTCTACCCTA
* * * * * * * *
102904130 CAAGGGTATTTCGAT-ATTTTACAAATCGAGAGTA-TTTCGATAATTTCACAGAT
1 CAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAG-TAATTTTACAAAC
* * * *
102904183 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAAC
* * * * **
102904237 CAGGGGTATTTTGGTAATTTTACT-GATCGATGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTA-TAAATCGAGGGTATTTTAGTAATTTTACAAAC
* *
102904291 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTGGTAATTTTATAAATCGAGGGTA
102904326 AAACTGTAAT
Statistics
Matches: 116, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
53 13 0.11
54 99 0.85
55 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTACAAAC
Found at i:102904325 original size:81 final size:81
Alignment explanation
Indices: 102904145--102904325 Score: 231
Period size: 81 Copynumber: 2.2 Consensus size: 81
102904135 GTATTTCGAT
*
102904145 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAGATCAGGGGTATTTTGGTAATTTTACAAAC
1 ATTTTACAAATCGAGGGTATTTCGATAATTTCACAGATCAGGGGTATTTTGGTAATTTTACAAAC
102904210 CAAGGGTATTTTAGTA
66 CAAGGGTATTTTAGTA
* * * * * * **
102904226 ATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACTGATC-GATGGTATTTTGGTAATTTTGTAA
1 ATTTTACAAATCGA-GGGTATTTCGATAATTTCACAGATCAG-GGGTATTTTGGTAATTTTACAA
102904289 ACCAAGGGTATTTTAGTA
64 ACCAAGGGTATTTTAGTA
**
102904307 ATTTTGTAAATCGAGGGTA
1 ATTTTACAAATCGAGGGTA
102904326 AAACTGTAAT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
80 3 0.04
81 80 0.94
82 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
ATTTTACAAATCGAGGGTATTTCGATAATTTCACAGATCAGGGGTATTTTGGTAATTTTACAAAC
CAAGGGTATTTTAGTA
Found at i:102904334 original size:27 final size:27
Alignment explanation
Indices: 102904304--102904460 Score: 233
Period size: 27 Copynumber: 5.8 Consensus size: 27
102904294 GGGTATTTTA
* * *
102904304 GTAATTTTGTAAATCGAGGGTAAAACT
1 GTAATTCTATAAATCGAGGGTAAAACG
102904331 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
102904358 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* **
102904385 GTAATTCTGTAAATCGAGAATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
102904412 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
102904439 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
102904461 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:102904347 original size:81 final size:81
Alignment explanation
Indices: 102904186--102904352 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 81
102904176 CACAGATCAG
***
102904186 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAACTGG
* *
102904251 TAATTTTACTGATCGA
66 TAATTCTACTAATCGA
* ** ** *
102904267 TGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAACT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGT-AAACT
102904331 -GTAATTCTA-TAAATCGA
64 GGTAATTCTACT-AATCGA
102904348 GGGTA
1 GGGTA
102904353 AAACGGTAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
80 2 0.03
81 67 0.94
82 2 0.03
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAACTGG
TAATTCTACTAATCGA
Found at i:102904361 original size:81 final size:81
Alignment explanation
Indices: 102904276--102904473 Score: 252
Period size: 81 Copynumber: 2.4 Consensus size: 81
102904266 ATGGTATTTT
* * * * * ** *
102904276 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTAT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGAATAAAACGGTAATTCTAT
102904341 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* *** * *
102904357 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAATAAAACGGTAATTTTAT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGAATAAAACGGTAATTCTAT
*
102904422 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAAAC
*
102904438 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTT
1 GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTT
102904474 CCAAATTGAG
Statistics
Matches: 96, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (81 bp):
GGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTGTAAATCGAGAATAAAACGGTAATTCTAT
AAATCGAGGGTAAAAC
Found at i:102904469 original size:54 final size:54
Alignment explanation
Indices: 102904240--102904473 Score: 220
Period size: 54 Copynumber: 4.3 Consensus size: 54
102904230 TACAAACCAG
* * * *** * * *
102904240 GGGTATTTTGGTAATTTTACT-GATCGATGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTAATTTGGTAATTTTA-TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
* * * *
102904294 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACT-GTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGAGGGTAAAA-TGGTAATTCTGTAAATCGA
*** * *
102904348 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
** ***
102904402 GAATAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
*
102904456 GGGTACTTTGGTAATTTT
1 GGGTAATTTGGTAATTTT
102904474 CCAAATTGAG
Statistics
Matches: 147, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
53 1 0.01
54 145 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.35
Consensus pattern (54 bp):
GGGTAATTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
Found at i:102907534 original size:2 final size:2
Alignment explanation
Indices: 102907527--102907564 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
102907517 TATGGAAAGC
102907527 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102907565 GAAAGTCATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102916849 original size:40 final size:40
Alignment explanation
Indices: 102916664--102916852 Score: 256
Period size: 40 Copynumber: 4.7 Consensus size: 40
102916654 CTGTGTTCCA
* * *
102916664 GTTGGATCAACTTTTACGAGCTTCTATTTGGCGTGTTACG
1 GTTGGATCAACTTTTATGAGCTTCTGTTTGGCATGTTACG
*
102916704 GTTGGATCAACTTTTATGAGCTTCTATTTGGCATGTTACG
1 GTTGGATCAACTTTTATGAGCTTCTGTTTGGCATGTTACG
* * *
102916744 GTTGGATCAACTCTTATGAGCATCTGTTTTGCGC-T-TTTCG
1 GTTGGATCAACTTTTATGAGCTTCTG-TTTG-GCATGTTACG
* * *
102916784 GTTGGATCAGCTCTTATGAGCTTCTGTTTGGTATGTTACG
1 GTTGGATCAACTTTTATGAGCTTCTGTTTGGCATGTTACG
102916824 GTTGGATCAACTTTTATGAGCTTCTGTTT
1 GTTGGATCAACTTTTATGAGCTTCTGTTT
102916853 AGTGTGCTTC
Statistics
Matches: 133, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 120 0.90
41 5 0.04
42 2 0.02
ACGTcount: A:0.17, C:0.16, G:0.24, T:0.43
Consensus pattern (40 bp):
GTTGGATCAACTTTTATGAGCTTCTGTTTGGCATGTTACG
Found at i:102916870 original size:40 final size:40
Alignment explanation
Indices: 102916650--102916906 Score: 252
Period size: 40 Copynumber: 6.5 Consensus size: 40
102916640 ATACTTTCCA
* * * * * *
102916650 TTTGCTGTGTTCCAGTTGGATCAACTTTTACGAGCTTCTA
1 TTTGGTGTGTTACGGTTGGATCAACTCTTATGAGCTTCTG
* * *
102916690 TTTGGCGTGTTACGGTTGGATCAACTTTTATGAGCTTCTA
1 TTTGGTGTGTTACGGTTGGATCAACTCTTATGAGCTTCTG
** *
102916730 TTTGGCATGTTACGGTTGGATCAACTCTTATGAGCATCTG
1 TTTGGTGTGTTACGGTTGGATCAACTCTTATGAGCTTCTG
* * * *
102916770 TTTTGCGCT-TTTCGGTTGGATCAGCTCTTATGAGCTTCTG
1 TTTGGTG-TGTTACGGTTGGATCAACTCTTATGAGCTTCTG
* *
102916810 TTTGGTATGTTACGGTTGGATCAACTTTTATGAGCTTCTG
1 TTTGGTGTGTTACGGTTGGATCAACTCTTATGAGCTTCTG
* * * *
102916850 TTTAGTGTGCTT-CAGG-TGGATCAGCTCTTATAAGTTTCTG
1 TTTGGTGTG-TTAC-GGTTGGATCAACTCTTATGAGCTTCTG
*
102916890 TCTGGTGTGTT-CGGTTG
1 TTTGGTGTGTTACGGTTG
102916907 ATCTGACAAT
Statistics
Matches: 184, Mismatches: 28, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
38 2 0.01
39 6 0.03
40 171 0.93
41 5 0.03
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43
Consensus pattern (40 bp):
TTTGGTGTGTTACGGTTGGATCAACTCTTATGAGCTTCTG
Found at i:102917611 original size:20 final size:20
Alignment explanation
Indices: 102917563--102917618 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
102917553 AGTTTATGCT
** * *
102917563 AAGTAAATAAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
102917583 AAGTAAATGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
102917603 AAGTAAATGGAGTGGT
1 AAGTAAATGGAATGGT
102917619 TCATAATATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:102931389 original size:40 final size:39
Alignment explanation
Indices: 102931344--102931473 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
102931334 CGGAATATAA
102931344 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
102931384 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
102931424 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
102931464 CCGGATATAA
1 CCGGATATAA
102931474 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:102931488 original size:40 final size:40
Alignment explanation
Indices: 102931360--102931511 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
102931350 ATAACCATGT
* * *
102931360 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
102931400 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
102931440 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
102931480 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
102931512 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:102931494 original size:80 final size:80
Alignment explanation
Indices: 102931360--102931509 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
102931350 ATAACCATGT
*
102931360 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
102931424 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
102931440 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
102931503 CCCGGAT
64 CCCGGAT
102931510 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:102939032 original size:40 final size:40
Alignment explanation
Indices: 102938892--102939077 Score: 167
Period size: 41 Copynumber: 4.6 Consensus size: 40
102938882 CCGCACCAAG
* * * * * * * *
102938892 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
102938932 GCCTTCGGGTCTTAGCCCGGATTTAAATGACTCGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACT-ACTAGCAC-AATT
*
102938973 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * * *
102939013 GCCTTCGGGTCTTAACCCGGATTATAATTTCCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGA-TATAACTACTAGCACAATT
* *
102939054 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
102939078 CATTCAATTT
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 52 0.43
41 64 0.53
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:102939060 original size:81 final size:81
Alignment explanation
Indices: 102938924--102939077 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
102938914 ATCACGATTT
* *
102938924 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATTTAAATGACTCGCACGAATGCCTTCGGGGCTTAGC
102938989 CCGGATATAGCTACTA
66 CCGGATATAGCTACTA
* ** * *
102939005 GCACAATTGCCTTCGGGTCTTAACCCGGA-TTATAATTTC-CAGCA-TAATTGTCTTCGGGGCTT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATTTA-AATGACTC-GCACGAA-TGCCTTCGGGGCTT
102939067 AGCCCGGATAT
63 AGCCCGGATAT
102939078 CATTCAATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 6 0.10
81 57 0.90
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (81 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATTTAAATGACTCGCACGAATGCCTTCGGGGCTTAGC
CCGGATATAGCTACTA
Found at i:102949042 original size:40 final size:39
Alignment explanation
Indices: 102948877--102949060 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
102948867 AAATTGAATG
* * *
102948877 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
102948917 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
102948957 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
102948997 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
102949036 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
102949061 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:102949085 original size:80 final size:81
Alignment explanation
Indices: 102948917--102949105 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
102948907 GCTGGAAATT
* * * *
102948917 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
102948982 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
102948998 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
102949061 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
102949077 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
102949106 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:102954272 original size:29 final size:27
Alignment explanation
Indices: 102954238--102954340 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
102954228 TACTCAATCA
*
102954238 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
102954267 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
102954296 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
102954325 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
102954341 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:102959807 original size:39 final size:39
Alignment explanation
Indices: 102959755--102959976 Score: 300
Period size: 39 Copynumber: 5.7 Consensus size: 39
102959745 ATTTGATGTA
*
102959755 TATCCGGACTTAAGGTCAGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
102959794 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
102959833 TATCTGGACTTAAGGTCTGCAGGCTTCGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * ** *
102959872 TATTCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * *
102959912 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
102959951 TATCCGGACTTAAGGTCCACAGGCTT
1 TATCCGGACTTAAGGTCCGCAGGCTT
102959977 TGTACTGGTA
Statistics
Matches: 159, Mismatches: 23, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 127 0.80
40 32 0.20
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:102959934 original size:79 final size:79
Alignment explanation
Indices: 102959755--102959963 Score: 294
Period size: 79 Copynumber: 2.7 Consensus size: 79
102959745 ATTTGATGTA
* * **
102959755 TATCCGGACTTAAGGTCAGCAGGCTTCGTGCTGGAATTGTATCCAGACTT-AAGGTCCGCAGGCT
1 TATCCGGACTTAAGGTCAGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCT
*
102959819 TCGTGCTGGAATTG
66 TCATGCTGGAATTG
* * * *
102959833 TATCTGGACTTAAGGTCTGCAGGCTTCGTGCTGGAATTATATTCGGGCTTAAAGACCCGCAGGCT
1 TATCCGGACTTAAGGTCAGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCT
102959898 TCATGCTGGAATTG
66 TCATGCTGGAATTG
* * * *
102959912 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAA
1 TATCCGGACTTAAGGTCAGCAGGCTTCGTGCTGGAATTATATCCGGACTTAA
102959964 GGTCCACAGG
Statistics
Matches: 114, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
78 44 0.39
79 70 0.61
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (79 bp):
TATCCGGACTTAAGGTCAGCAGGCTTCGTGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCT
TCATGCTGGAATTG
Found at i:102959992 original size:118 final size:118
Alignment explanation
Indices: 102959773--102960016 Score: 335
Period size: 118 Copynumber: 2.1 Consensus size: 118
102959763 CTTAAGGTCA
* * * * *
102959773 GCAGGCTTCGTGCTGGAATTGTATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCT
1 GCAGGCTTCATGCTGGAATTGTATCCAGACTTAAGATCCGCAGGCTTCGTGCTGGAACTATATCC
** * * *
102959838 GGACTTAAGGTCTGCAGGCTTCGTGCTGGAATTATATTCGGGCTTAAAGACCC
66 GGACTTAAGGTCCACAGGCTTCGTACTGGAACTATATCCGGGCTTAAAGACCC
* *
102959891 GCAGGCTTCATGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATATCC
1 GCAGGCTTCATGCTGGAATTGTATCCAGACTTAAGATCCGCAGGCTTCGTGCTGGAACTATATCC
* * * *
102959956 GGACTTAAGGTCCACAGGCTTTGTACTGGTACTATATCCGGGCTTCAAGTCCC
66 GGACTTAAGGTCCACAGGCTTCGTACTGGAACTATATCCGGGCTTAAAGACCC
*
102960009 GTAGGCTT
1 GCAGGCTT
102960017 TGTGTTGGTG
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 109 1.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (118 bp):
GCAGGCTTCATGCTGGAATTGTATCCAGACTTAAGATCCGCAGGCTTCGTGCTGGAACTATATCC
GGACTTAAGGTCCACAGGCTTCGTACTGGAACTATATCCGGGCTTAAAGACCC
Found at i:102982560 original size:27 final size:26
Alignment explanation
Indices: 102982512--102982563 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
102982502 GCGAGGCTGC
*
102982512 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
102982538 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
102982564 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:103000781 original size:25 final size:25
Alignment explanation
Indices: 103000746--103000857 Score: 143
Period size: 25 Copynumber: 4.5 Consensus size: 25
103000736 TAAGCTTCTT
* *
103000746 AATTTGTTCTTAATAGTTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
**
103000771 AATTTGCTCTTAATAATTCTAGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
103000796 AAGTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
103000821 AATTTGCTCTTAATATTTTCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
103000846 AATTTGCCCTTA
1 AATTTGCTCTTA
103000858 TTATTTCTGA
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 74 1.00
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.47
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:103001750 original size:45 final size:45
Alignment explanation
Indices: 103001686--103001772 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
103001676 TATCGTACAG
* * *
103001686 TACTATTCGGGCCTTTGAGCCTAGCATGTTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTGATA
*
103001731 TACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCTGGTG
1 TACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTG
103001773 TGAAAGTATG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTGATA
Found at i:103009596 original size:40 final size:39
Alignment explanation
Indices: 103009543--103009650 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 39
103009533 ATCACGATTT
*
103009543 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
* * *
103009583 GCACGTATGCCTTCGGGTCTTAGCCCGGATTTAGCTACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
*
103009623 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
103009651 TTATAATTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.02
40 59 0.98
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTA
Found at i:103009671 original size:40 final size:40
Alignment explanation
Indices: 103009543--103009679 Score: 125
Period size: 40 Copynumber: 3.4 Consensus size: 40
103009533 ATCACGATTT
* * * **
103009543 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTAACTACCA
* * * *
103009583 GCAC-GTATGCCTTCGGGTCTTAGCCCGGATTTAGCTACTA
1 GCACAAT-TGCCTTCGGGTCTTAACCCGGATTTAACTACCA
* *
103009623 GCACAATTGCCTTCGGGTCTTAACCCGG-TTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATT-TAACTACCA
* *
103009663 GCATAATTGTCTTCGGG
1 GCACAATTGCCTTCGGG
103009680 GCTTGGCCCG
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.02
40 78 0.96
41 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATTTAACTACCA
Found at i:103011622 original size:27 final size:27
Alignment explanation
Indices: 103011582--103011666 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
103011572 AGGAAGCGTC
* *
103011582 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
103011609 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
103011636 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
103011663 CTGG
1 CTGG
103011667 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.15, C:0.25, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:103017931 original size:24 final size:24
Alignment explanation
Indices: 103017904--103017981 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
103017894 AAGGCTGTCA
*
103017904 GGAGAAGATTTCGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
103017928 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
103017952 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
103017976 GGAGAA
1 GGAGAA
103017982 CGGTGTTGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.33, C:0.05, G:0.41, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:103019452 original size:27 final size:27
Alignment explanation
Indices: 103019412--103019522 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
103019402 AGGAAGCGTC
* * *
103019412 CTGGTGGCTATGCCATATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
103019439 CTGGCGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* * *
103019466 CTAGTGGCTCTGCCATAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
103019493 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
103019519 CTGG
1 CTGG
103019523 AAGCCATGCT
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
26 13 0.19
27 57 0.81
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:103019504 original size:54 final size:53
Alignment explanation
Indices: 103019415--103019520 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
103019405 AAGCGTCCTG
* *
103019415 GTGGCTATGCCATATTTATCTGATCTGGCGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTATGCCATAATTATCTGATCTGGCGACTCTGCCACAT-TATCTGTTCTA
* * * *
103019469 GTGGCTCTGCCATAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTTCT
1 GTGGCTATGCCATAATTATCTGATCTGGCGACTCTGCCACATTATCTGTTCT
103019521 GGAAGCCATG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 10 0.22
54 36 0.78
ACGTcount: A:0.17, C:0.24, G:0.20, T:0.40
Consensus pattern (53 bp):
GTGGCTATGCCATAATTATCTGATCTGGCGACTCTGCCACATTATCTGTTCTA
Found at i:103029262 original size:85 final size:85
Alignment explanation
Indices: 103029114--103029284 Score: 324
Period size: 85 Copynumber: 2.0 Consensus size: 85
103029104 ATTATGTGCT
103029114 TGATTTGTCTGATTTAATGAATGGATAAGTAAGATTATCTAGGAAACATGGAAATACAGGTATAA
1 TGATTTGTCTGATTTAATGAATGGATAAGTAAGATTATCTAGGAAACATGGAAATACAGGTATAA
103029179 GTACACTTGTTTAAATGAGA
66 GTACACTTGTTTAAATGAGA
* *
103029199 TGATTTGTCTGATTTATTGAATGGATAAGTAAGATTATCTAGGAAACATGGAAATACATGTATAA
1 TGATTTGTCTGATTTAATGAATGGATAAGTAAGATTATCTAGGAAACATGGAAATACAGGTATAA
103029264 GTACACTTGTTTAAATGAGA
66 GTACACTTGTTTAAATGAGA
103029284 T
1 T
103029285 AACTGGAAAG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (85 bp):
TGATTTGTCTGATTTAATGAATGGATAAGTAAGATTATCTAGGAAACATGGAAATACAGGTATAA
GTACACTTGTTTAAATGAGA
Found at i:103033710 original size:93 final size:93
Alignment explanation
Indices: 103033598--103033768 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
103033588 GCCCATAAGT
* *
103033598 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103033663 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
103033691 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103033756 CGAGTTCGGATGC
66 CGAGTTCGGATGC
103033769 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:103033784 original size:46 final size:46
Alignment explanation
Indices: 103033590--103033770 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
103033580 TGTAACCCGC
* * *
103033590 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
103033636 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
103033686 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
103033729 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
103033771 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:103036194 original size:30 final size:30
Alignment explanation
Indices: 103036150--103036238 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
103036140 CAAAGATAAC
103036150 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
103036179 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
103036209 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
103036239 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:103036198 original size:15 final size:15
Alignment explanation
Indices: 103036150--103036229 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
103036140 CAAAGATAAC
*
103036150 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
103036164 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
103036179 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
103036194 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
103036209 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
103036224 AAGAAA
1 AAGAAA
103036230 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:103036238 original size:15 final size:15
Alignment explanation
Indices: 103036161--103036238 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
103036151 AGAAAACCGA
103036161 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
103036176 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
103036190 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
103036205 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
103036221 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
103036236 ATA
1 ATA
103036239 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:103041928 original size:139 final size:136
Alignment explanation
Indices: 103041732--103042110 Score: 597
Period size: 139 Copynumber: 2.8 Consensus size: 136
103041722 GTACATAATA
103041732 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT-TGTGATAAGGC
1 ATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
* * *
103041796 CTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGA
65 CTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATG-T--G-ATAA-GGCC--TGTGATGA
103041860 ATGTGAAA-TGTAT
123 ATGTGAAAGTGTAT
*
103041873 ATATATGTGATAA-CCTAATGGCCGATGTGATGAATGTGAAAGT-TATATATATGTGATAAGGCC
1 ATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
103041936 TAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTGTGATGAATGTGAAA
66 TAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTGTGATGAATGTGAAA
103042001 GTGTAT
131 GTGTAT
103042007 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
*
103042072 CTAATGGCCGACGTGATGAATGTGAAAGTATATATATAT
65 CTAATGGCCGACGTGATGAATGTGAAAGTGTATATATAT
103042111 ATGTGGTAAA
Statistics
Matches: 226, Mismatches: 6, Indels: 16
0.91 0.02 0.06
Matches are distributed among these distances:
133 16 0.07
134 18 0.08
135 4 0.02
136 32 0.14
137 58 0.26
138 7 0.03
139 64 0.28
140 14 0.06
141 13 0.06
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (136 bp):
ATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
TAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTGTGATGAATGTGAAA
GTGTAT
Found at i:103042001 original size:39 final size:39
Alignment explanation
Indices: 103041947--103042024 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
103041937 AATGGCCGAC
103041947 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
103041986 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
103042025 AATGGCCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (39 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
Found at i:103042031 original size:88 final size:87
Alignment explanation
Indices: 103041807--103042073 Score: 400
Period size: 88 Copynumber: 3.0 Consensus size: 87
103041797 TAATGGCCGA
103041807 TGTGATGAATGTG-AAGTG--TATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
103041868 TGTATATATATGTGATAACCTAATGGCC
66 TGTATATATATGTG---A--TAA-GGCC
*
103041896 GATGTGATGAATGTGAAAGT-TATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGA
1 --TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
103041960 AAGTGTATATATATGTGATAAGGCC
64 AA-TGTATATATATGTGATAAGGCC
103041985 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA
103042050 ATGTATATATATGTGATAAGGCC
65 ATGTATATATATGTGATAAGGCC
103042073 T
1 T
103042074 AATGGCCGAC
Statistics
Matches: 167, Mismatches: 2, Indels: 17
0.90 0.01 0.09
Matches are distributed among these distances:
87 18 0.11
88 65 0.39
89 7 0.04
90 3 0.02
91 13 0.08
92 5 0.03
93 14 0.08
94 28 0.17
95 14 0.08
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (87 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
TGTATATATATGTGATAAGGCC
Found at i:103042111 original size:51 final size:50
Alignment explanation
Indices: 103041986--103042130 Score: 222
Period size: 49 Copynumber: 2.9 Consensus size: 50
103041976 GATAAGGCCT
*
103041986 GTGATGAATGTGAAAG-TGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGATGTATATATATGTGATAAGGCCTAATGGCCGAC
103042035 GTGATGAATGTGAAA-ATGTATATATATGTGATAAGGCCTAATGGCCGAC
1 GTGATGAATGTGAAAGATGTATATATATGTGATAAGGCCTAATGGCCGAC
* * * *
103042084 GTGATGAATGTGAAAGTATATATATATATGTGGTAAAGCCGAATGGC
1 GTGATGAATGTGAAAG-ATGTATATATATGTGATAAGGCCTAATGGC
103042131 TAATGTGAAT
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
49 62 0.70
51 26 0.30
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (50 bp):
GTGATGAATGTGAAAGATGTATATATATGTGATAAGGCCTAATGGCCGAC
Found at i:103042238 original size:36 final size:36
Alignment explanation
Indices: 103042179--103042264 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
103042169 AACTTGGAAA
103042179 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
103042217 TATGTCCGGGTACGA-CCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
103042253 TATGTCCGGGTA
1 TATGTCCGGGTA
103042265 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 34 0.72
37 9 0.19
38 4 0.09
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.27
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:103044184 original size:40 final size:40
Alignment explanation
Indices: 103044140--103044449 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
103044130 GAGAATTGAG
103044140 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
103044180 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
103044220 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
103044260 AATGATATATCCGGGCTAA-TTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
103044299 AATGATATATCCGGGCTAA-TTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
103044338 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
103044378 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
103044418 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCA
103044450 ATCATGCTGG
Statistics
Matches: 260, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 78 0.30
40 182 0.70
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:103045287 original size:40 final size:39
Alignment explanation
Indices: 103045192--103045292 Score: 98
Period size: 39 Copynumber: 2.6 Consensus size: 39
103045182 GAATGGTATT
* ** * *
103045192 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAA
*
103045231 TGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATAA
1 CGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-AA
*
103045270 CCGGGCTATGTCCCGAAGACAAT
1 -CGGGCTATGTCCCGAAGGCAAT
103045293 CGAGCGAGTC
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
38 5 0.10
39 27 0.54
40 18 0.36
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAA
Found at i:103045308 original size:40 final size:40
Alignment explanation
Indices: 103045232--103045313 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 40
103045222 GTGACTAAAT
* * *
103045232 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
1 GGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAACC
* * *
103045272 GGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATATCC
1 GGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAACC
103045312 GG
1 GG
103045314 TAAATTCGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.06
40 33 0.94
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.21
Consensus pattern (40 bp):
GGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAACC
Found at i:103048129 original size:49 final size:49
Alignment explanation
Indices: 103048060--103048449 Score: 606
Period size: 49 Copynumber: 8.2 Consensus size: 49
103048050 GTACATAATA
*
103048060 ATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
103048109 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
103048158 ATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
103048206 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG--TAT
* *
103048257 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
103048306 ATATATGTG---A----TAA-GGCC--TGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
103048345 ATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
103048393 ATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
103048442 ATATATGT
1 ATATATGT
103048450 ATGTGGTAAA
Statistics
Matches: 317, Mismatches: 10, Indels: 28
0.89 0.03 0.08
Matches are distributed among these distances:
39 30 0.09
41 4 0.01
42 4 0.01
46 7 0.02
48 89 0.28
49 136 0.43
51 47 0.15
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:103048227 original size:97 final size:97
Alignment explanation
Indices: 103048060--103048449 Score: 620
Period size: 97 Copynumber: 4.1 Consensus size: 97
103048050 GTACATAATA
103048060 ATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGC-GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
103048125 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
65 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
103048158 ATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
*
103048223 TAATGGCCGATGTGATGAATGTGAAAATGTATAT
66 TAATGGCCGATGTGATGAATGTG-AAA-GTGTAT
* *
103048257 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTG---A---
1 ATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
103048316 -TAA-GGCC--TGTGATGAATGTGAAAGTGTAT
65 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
103048345 ATATATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
* *
103048410 TAATGGCCAACGTGATGAATGTGAAAGTGTAT
66 TAATGGCCGATGTGATGAATGTGAAAGTGTAT
103048442 ATATATGT
1 ATATATGT
103048450 ATGTGGTAAA
Statistics
Matches: 271, Mismatches: 8, Indels: 27
0.89 0.03 0.09
Matches are distributed among these distances:
87 32 0.12
88 27 0.10
89 3 0.01
90 14 0.05
92 4 0.01
93 3 0.01
94 3 0.01
95 4 0.01
97 94 0.35
98 27 0.10
99 28 0.10
100 32 0.12
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (97 bp):
ATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:103048573 original size:37 final size:36
Alignment explanation
Indices: 103048518--103048604 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
103048508 AACTTGGAAA
103048518 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
103048556 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
*
103048593 TATGTCTGGGTA
1 TATGTCCGGGTA
103048605 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:103050530 original size:40 final size:40
Alignment explanation
Indices: 103050486--103050797 Score: 428
Period size: 40 Copynumber: 7.8 Consensus size: 40
103050476 GAGAATTGAG
*
103050486 AATGATGTATCCGGAATAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
**
103050526 AATGATGTATCTTGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
103050566 AATGATGTATCTGGACTAAGTTCTGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
103050606 AATGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
103050646 AATGATATATCCGGGCTAAATTCCAAAGAGCATCCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
103050686 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
103050726 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
103050766 AGTGATGTATCCGGGCT-AGATCCCGAAGAGCA
1 AATGATGTATCCGGACTAAG-TTCCGAAGAGCA
103050798 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 247 0.99
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:103067312 original size:30 final size:30
Alignment explanation
Indices: 103067278--103067337 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
103067268 CTTTAATAAG
* * *
103067278 AACTTTGGTAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAACTACACTTTTGCCCCTA
* *
103067308 AACTTTTGCATAACTACACTTTTGCCCCTA
1 AACTTTGGCAAAACTACACTTTTGCCCCTA
103067338 GGCTTGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAACTACACTTTTGCCCCTA
Found at i:103069513 original size:33 final size:33
Alignment explanation
Indices: 103069473--103069562 Score: 128
Period size: 33 Copynumber: 2.7 Consensus size: 33
103069463 TACATTCACA
*
103069473 TGCCATAACCTAGTTATGGTCTTATTATCTTAT
1 TGCCATAACCTAGTTATGGTCTTATTATCCTAT
*
103069506 TGCCATAACCTGGTTATGGTCTTATTATCCTAT
1 TGCCATAACCTAGTTATGGTCTTATTATCCTAT
* *
103069539 TGCCATAGCCCAAG-TATGGTCTTA
1 TGCCATA-ACCTAGTTATGGTCTTA
103069563 ATTGGCAACT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
33 48 0.94
34 3 0.06
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (33 bp):
TGCCATAACCTAGTTATGGTCTTATTATCCTAT
Found at i:103073455 original size:40 final size:40
Alignment explanation
Indices: 103073405--103073500 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
103073395 GAATGATTCT
* *
103073405 ACATAAGTGCCTTTGTTTGTACTTCGGTACCCTTGATTGC
1 ACATAAGTGCCTCTGTTTGTACTTCGATACCCTTGATTGC
* *
103073445 ACATATGTGCCTCTGTTTGTACTTTGATACCCTTGATTGC
1 ACATAAGTGCCTCTGTTTGTACTTCGATACCCTTGATTGC
* *
103073485 ACATAGGTGCCCCTGT
1 ACATAAGTGCCTCTGT
103073501 ACTTCGATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.39
Consensus pattern (40 bp):
ACATAAGTGCCTCTGTTTGTACTTCGATACCCTTGATTGC
Found at i:103073510 original size:36 final size:38
Alignment explanation
Indices: 103073422--103073512 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 38
103073412 TGCCTTTGTT
* * *
103073422 TGTACTTCGGTACCCTTGATTGCACATATGTGCCTCTGTT
1 TGTACTTCGATACCCTTGATTGCACATAGGTGCCTC--TC
*
103073462 TGTACTTTGATACCCTTGATTGCACATAGGTGCC-C-C
1 TGTACTTCGATACCCTTGATTGCACATAGGTGCCTCTC
103073498 TGTACTTCGATACCC
1 TGTACTTCGATACCC
103073513 CTAAATGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
36 14 0.30
39 1 0.02
40 31 0.67
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (38 bp):
TGTACTTCGATACCCTTGATTGCACATAGGTGCCTCTC
Found at i:103081386 original size:50 final size:49
Alignment explanation
Indices: 103081326--103081456 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
103081316 AATGTTGTGT
* *
103081326 TAGTATAAGACCATGTCTGGGACATGGCATCGACAC-GGATATGCGAGAGC
1 TAGTATAAGACCATGTCTGGGACATGGCATCGAC-CTCGAT-GGCGAGAGC
* * * *
103081376 TAGTATAAGACCATGTCTGGGACATGACATCGGCCTCGATGGTGATAGC
1 TAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGATGGCGAGAGC
* *
103081425 TAGTGTAAAACCATGTCTGGGACATGGCATCG
1 TAGTATAAGACCATGTCTGGGACATGGCATCG
103081457 GCATCTTATC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
49 36 0.51
50 35 0.49
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
TAGTATAAGACCATGTCTGGGACATGGCATCGACCTCGATGGCGAGAGC
Found at i:103087375 original size:46 final size:49
Alignment explanation
Indices: 103087265--103087487 Score: 232
Period size: 46 Copynumber: 4.7 Consensus size: 49
103087255 CATTATGAGA
* * * *
103087265 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA-GT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATAT
* *
103087313 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACG-TAC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATAT
* * * *
103087359 GCCAGTTTAA-ACCATGTCTGGGACAT-GCATTGG-CTC-A-ACGTTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATAT
** * **
103087403 GTTAGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCGATGGTGATA-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACGATAT
103087452 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
103087488 ATTTTATCCC
Statistics
Matches: 143, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
43 3 0.02
44 9 0.06
45 19 0.13
46 48 0.34
47 17 0.12
48 12 0.08
49 33 0.23
50 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (49 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGATAT
Found at i:103087478 original size:94 final size:94
Alignment explanation
Indices: 103087219--103087489 Score: 313
Period size: 94 Copynumber: 2.9 Consensus size: 94
103087209 ACTTGTGTGA
* * * * *
103087219 GCTAGTGTAAGACATGTCTGGGACATCCATCAGCCAC-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCATGT
**
103087283 CTGGGACATGGCATCGGCATTGAGATGAGT
66 CTGGGACAT-GCATCGGCATCAAGATGAGT
* *
103087313 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACG-TACGCCAGTTTAA-ACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATA-GCCAGTGTAAGACCATG
* *
103087375 TCTGGGACATGCATTGGC-TCAACG-T-TGT
65 TCTGGGACATGCATCGGCATCAA-GATGAGT
* * *
103087403 GTTAGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCGATGGTGATAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGATAGCCAGTGTAAGACCAT
103087468 GTCTGGGACATGGCATCGGCAT
64 GTCTGGGACAT-GCATCGGCAT
103087490 TTTATCCCAT
Statistics
Matches: 150, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
90 13 0.09
91 16 0.11
92 21 0.14
93 28 0.19
94 63 0.42
95 8 0.05
96 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACCATGT
CTGGGACATGCATCGGCATCAAGATGAGT
Found at i:103097585 original size:21 final size:22
Alignment explanation
Indices: 103097559--103097610 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
103097549 AACTATGGAG
*
103097559 TATATGTATTAAGATGAT-GTTT
1 TATATGTATTAA-ATGATAATTT
103097581 T-TATGCT-TTAAATGATAATTT
1 TATATG-TATTAAATGATAATTT
103097602 TATATGTAT
1 TATATGTAT
103097611 ATGGTTTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
20 5 0.20
21 13 0.52
22 7 0.28
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (22 bp):
TATATGTATTAAATGATAATTT
Done.