Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 337 of 770
Found at i:103103615 original size:13 final size:13
Alignment explanation
Indices: 103103597--103103621 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103103587 AATATAAATT
103103597 CACAGAAAATAAA
1 CACAGAAAATAAA
103103610 CACAGAAAATAA
1 CACAGAAAATAA
103103622 TTTTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (13 bp):
CACAGAAAATAAA
Found at i:103104450 original size:21 final size:20
Alignment explanation
Indices: 103104401--103104451 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
103104391 GTGTATTTTG
* *
103104401 AATTTTCTTGATAGATTATA
1 AATTTTGTTGATAGATTACA
*
103104421 AATGCTTGTTGATAGATATACA
1 AAT-TTTGTTGATAGAT-TACA
103104443 AATTTTGTT
1 AATTTTGTT
103104452 AAGTGATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 16 0.64
22 6 0.24
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (20 bp):
AATTTTGTTGATAGATTACA
Found at i:103110484 original size:40 final size:39
Alignment explanation
Indices: 103110421--103110506 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
103110411 TAACGACTTA
**
103110421 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * * *
103110460 TCGGCTAAAAGTTGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
103110500 TCGGCTA
1 TCGGCTA
103110507 TATTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:103127210 original size:28 final size:28
Alignment explanation
Indices: 103127164--103127232 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
103127154 TTTAAAACCC
*
103127164 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
103127191 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
103127219 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
103127233 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:103128882 original size:20 final size:20
Alignment explanation
Indices: 103128859--103128896 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103128849 CACATCCAAA
*
103128859 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
103128879 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
103128897 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:103135402 original size:37 final size:38
Alignment explanation
Indices: 103135247--103135492 Score: 234
Period size: 40 Copynumber: 6.3 Consensus size: 38
103135237 GAATCACGTA
* * **
103135247 CCTTCGGAATTTAACCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAACCGGAT-TAG-TAACTCGCACAAATG
* * * *
103135286 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATG
1 CCTTCGGGACTTA-ACCGGAT-TAGTAACTCGCACAAATG
*
103135326 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATG
1 CCTTCGGGACTTAA-CCGGA-TTAGTAACTCGCACAAATG
103135366 CCTTCGGG-CTTAACCGGATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCGGATTAGTAACTCGCACAAATG
*
103135403 CCTTCGGG-CTTAGCCCGGATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTA-ACCGGATTAGTAACTCGCACAAATG
* * *
103135441 CCTTC-GGA-TCTAGTCCGGATATAGTCACTTAGCACAAA-G
1 CCTTCGGGACT-TA-ACCGGAT-TAGTAAC-TCGCACAAATG
103135480 CCTTCGGGACTTA
1 CCTTCGGGACTTA
103135493 GCCCGGACAT
Statistics
Matches: 180, Mismatches: 16, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
37 33 0.18
38 43 0.24
39 28 0.16
40 74 0.41
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCGGATTAGTAACTCGCACAAATG
Found at i:103135409 original size:77 final size:78
Alignment explanation
Indices: 103135280--103135499 Score: 279
Period size: 77 Copynumber: 2.8 Consensus size: 78
103135270 GCTACTCGTT
* * * * *
103135280 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
103135345 ATTTAGTAACTCGCA
65 A-TTAGTAACTCGCA
*
103135360 TAAATGCCTTCGGGCTTA-ACCGGAT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
103135422 TTAGTAACTCGCA
66 TTAGTAACTCGCA
* * * *
103135435 CAAATGCCTTC-GGATCTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGCT-TAGACCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
103135498 GA
64 GA
103135500 CATCATTCGA
Statistics
Matches: 124, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
74 3 0.02
75 25 0.20
76 16 0.13
77 40 0.32
78 24 0.19
79 3 0.02
80 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTAGTAACTCGCA
Found at i:103135421 original size:38 final size:39
Alignment explanation
Indices: 103135280--103135499 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
103135270 GCTACTCGTT
* *
103135280 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
103135320 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
* *
103135360 TAAATGCCTTCGGG-CTTA-ACCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
103135397 CAAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
103135435 CAAATGCCTTC-GGA-TCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACT-TAGCCCGGAT-TAGTAAC-TCGCA
103135475 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103135500 CATCATTCGA
Statistics
Matches: 161, Mismatches: 11, Indels: 16
0.86 0.06 0.09
Matches are distributed among these distances:
37 33 0.20
38 43 0.27
39 16 0.10
40 67 0.42
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:103143418 original size:40 final size:40
Alignment explanation
Indices: 103143386--103143605 Score: 216
Period size: 40 Copynumber: 5.5 Consensus size: 40
103143376 TCGTTAAAAC
* * * *
103143386 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAAC
1 GCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAAT
* * *
103143426 GCCTTCAGGACTTAACCCGGATTTAGTAACTTGCATAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAT
*
103143466 GCCTTCGGGACTTAACCCGGATTTAGTAACTCACACAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAT
* *
103143506 GCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCGTACAAAT
1 GCCTTCGGGACTTAACCC-GGATTTAGTAACTCGCACAAAT
* ** * * *
103143545 GCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAAT
*
103143585 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
103143606 CATCATTCGA
Statistics
Matches: 153, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.21
40 107 0.70
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAT
Found at i:103145234 original size:23 final size:23
Alignment explanation
Indices: 103145180--103145346 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
103145170 CCTAGCCTCT
*
103145180 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
103145203 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
103145227 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
103145250 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
103145274 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
103145297 TTTAATAACCGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
103145320 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
103145344 TTT
1 TTT
103145347 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 70 0.52
24 65 0.48
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:103145234 original size:47 final size:47
Alignment explanation
Indices: 103145180--103145347 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
103145170 CCTAGCCTCT
*
103145180 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
103145227 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
103145274 TTTAATAACTGGGGCATAAGCCC-TTTAATAACCGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
103145320 TTTTGATAACTGGGGCATAAGCCCTTTT
1 -TTTAATAACTGGGGCATAAGCCCTTTT
103145348 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
46 21 0.18
47 90 0.79
48 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:103145348 original size:24 final size:24
Alignment explanation
Indices: 103145159--103145347 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
103145149 GCTTTATCAT
*
103145159 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
103145184 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
103145208 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
103145231 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
103145255 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
103145278 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
103145301 ATAACCGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
103145325 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
103145348 GCACTTCCTC
Statistics
Matches: 153, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 67 0.44
24 74 0.48
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:103145419 original size:9 final size:9
Alignment explanation
Indices: 103145405--103145461 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
103145395 ATCTCATGTG
103145405 CATATCATA
1 CATATCATA
*
103145414 CATATCATGTG
1 CATATCA--TA
103145425 CATATCATA
1 CATATCATA
* *
103145434 CATGTCATGTG
1 CATATCA--TA
103145445 CATATCATA
1 CATATCATA
103145454 CATATCAT
1 CATATCAT
103145462 GTTTACCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:103145421 original size:20 final size:20
Alignment explanation
Indices: 103145393--103145463 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
103145383 GCATTTATGA
*
103145393 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
103145413 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
103145433 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
103145453 ACATATCATGT
1 ACATATCATGT
103145464 TTACCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:103145428 original size:11 final size:11
Alignment explanation
Indices: 103145398--103145452 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
103145388 TATGAACATC
103145398 TCATGTGCATA
1 TCATGTGCATA
*
103145409 TCA--TACATA
1 TCATGTGCATA
103145418 TCATGTGCATA
1 TCATGTGCATA
* *
103145429 TCA--TACATG
1 TCATGTGCATA
103145438 TCATGTGCATA
1 TCATGTGCATA
103145449 TCAT
1 TCAT
103145453 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:103150927 original size:47 final size:47
Alignment explanation
Indices: 103150834--103151121 Score: 398
Period size: 47 Copynumber: 6.1 Consensus size: 47
103150824 TTAGGATTTT
* *
103150834 ATGTGATGAATGTGAACATGCGTA-GTGTGTTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
103150880 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
103150927 ATGTGATGAATGTGAACTTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAC----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
103150978 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
103151025 ATGTGATGAATGTGAACATGCATACATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
103151072 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
103151119 ATG
1 ATG
103151122 CGAAATGTGT
Statistics
Matches: 217, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
46 24 0.11
47 150 0.69
51 43 0.20
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:103150983 original size:98 final size:94
Alignment explanation
Indices: 103150834--103151121 Score: 407
Period size: 98 Copynumber: 3.0 Consensus size: 94
103150824 TTAGGATTTT
* * * *
103150834 ATGTGATGAATGTGAACATGCGTA-GTGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATACATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
103150898 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
103150927 ATGTGATGAATGTGAACTTGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG--CATACAT--GAGATAAGGCCGAATGGCCAATGTGATGAATGTG
103150992 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
103151025 ATGTGATGAATGTGAACATGCATACATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATACATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
103151090 TGTATATATGTGGTAAGGCCGAATGGCTA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
103151119 ATG
1 ATG
103151122 CGAAATGTGT
Statistics
Matches: 175, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
93 19 0.11
94 63 0.36
95 2 0.01
96 6 0.03
98 85 0.49
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATACATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:103151027 original size:145 final size:140
Alignment explanation
Indices: 103150834--103151121 Score: 450
Period size: 145 Copynumber: 2.0 Consensus size: 140
103150824 TTAGGATTTT
*
103150834 ATGTGATGAATGTGAACATGCGTAGTGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 ATGTGATGAATGTGAACATGCGTAGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* ** * *
103150899 GCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTTGTATATATATGCGTGATA
66 GCATACATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--TATATAT--GTGATA
103150964 AGGCCGAATGGCCA
127 AGGCCGAATGGCCA
103150978 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTA-GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
103151043 TGCATACATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGG
65 TGCATACATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGG
*
103151108 CCGAATGGCTA
130 CCGAATGGCCA
103151119 ATG
1 ATG
103151122 CGAAATGTGT
Statistics
Matches: 134, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
141 21 0.16
143 7 0.05
144 24 0.18
145 82 0.61
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCGTAGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
GCATACATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGC
CGAATGGCCA
Found at i:103151231 original size:46 final size:46
Alignment explanation
Indices: 103151095--103151231 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
103151085 GAACATGTAT
* * *
103151095 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
103151141 ATATGAGGTAAAGCCGAATGGCTAATGCAAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
103151187 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
103151232 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:103159001 original size:18 final size:18
Alignment explanation
Indices: 103158978--103159046 Score: 102
Period size: 18 Copynumber: 3.8 Consensus size: 18
103158968 CTTGGTCCAT
103158978 TGCAGTAACAGTAAATAG
1 TGCAGTAACAGTAAATAG
* *
103158996 TGCAGTAACAATAACTAG
1 TGCAGTAACAGTAAATAG
* *
103159014 TGCAGTAATAGTAATTAG
1 TGCAGTAACAGTAAATAG
103159032 TGCAGTAACAGTAAA
1 TGCAGTAACAGTAAA
103159047 CAGTATGCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (18 bp):
TGCAGTAACAGTAAATAG
Found at i:103159422 original size:27 final size:26
Alignment explanation
Indices: 103159391--103159578 Score: 130
Period size: 27 Copynumber: 7.0 Consensus size: 26
103159381 ATATATGGGC
103159391 AAAACAATCATTTTTCCTCATAAGGGA
1 AAAAC-ATCATTTTTCCTCATAAGGGA
* *
103159418 AAAACTTTCATTTTACCTCATAAGGGA
1 AAAAC-ATCATTTTTCCTCATAAGGGA
* * *
103159445 AAAATCGTCATTTTAT-CACATAAGGGC
1 AAAA-CATCATTTT-TCCTCATAAGGGA
* * *
103159472 AAAACAGTTATTTTGCCACATAAGGGCA
1 AAAACA-TCATTTTTCCTCATAAGGG-A
* *
103159500 AAACCATCATTTTACCTCATAAGGGCA
1 AAAACATCATTTTTCCTCATAAGGG-A
* * * * *
103159527 AAATCTTCATTTTAT-CACATAACGGC
1 AAAACATCATTTT-TCCTCATAAGGGA
103159553 AAAACTATCATTTTAT-CTCATAAGGG
1 AAAAC-ATCATTTT-TCCTCATAAGGG
103159579 TTCCGGTACG
Statistics
Matches: 129, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.04
27 118 0.91
28 6 0.05
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (26 bp):
AAAACATCATTTTTCCTCATAAGGGA
Found at i:103159467 original size:54 final size:53
Alignment explanation
Indices: 103159387--103159578 Score: 210
Period size: 54 Copynumber: 3.5 Consensus size: 53
103159377 CATCATATAT
* *
103159387 GGGCAAAACAATCATTTT-TCCTCATAAGGGAAAAACTTTCATTTTACCTCATAA
1 GGGCAAAAC-ATCATTTTAT-CTCATAAGGGCAAAACTTTCATTTTACCACATAA
* * * * *
103159441 GGGAAAAATCGTCATTTTATCACATAAGGGCAAAACAGTT-ATTTTGCCACATAA
1 GGGCAAAA-CATCATTTTATCTCATAAGGGCAAAAC-TTTCATTTTACCACATAA
* *
103159495 GGGCAAAACCATCATTTTACCTCATAAGGGCAAAA-TCTTCATTTTATCACATAA
1 GGGCAAAA-CATCATTTTATCTCATAAGGGCAAAACT-TTCATTTTACCACATAA
*
103159549 CGGCAAAACTATCATTTTATCTCATAAGGG
1 GGGCAAAAC-ATCATTTTATCTCATAAGGG
103159579 TTCCGGTACG
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
53 3 0.03
54 108 0.94
55 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30
Consensus pattern (53 bp):
GGGCAAAACATCATTTTATCTCATAAGGGCAAAACTTTCATTTTACCACATAA
Found at i:103159522 original size:81 final size:81
Alignment explanation
Indices: 103159378--103159566 Score: 261
Period size: 81 Copynumber: 2.3 Consensus size: 81
103159368 ATACACATAC
* * * * **
103159378 ATCATATATGGGCAAAACAATCATTTTTCCTCATAAGGGAAAAACTTTCATTTTACCTCATAAGG
1 ATCACATAAGGGCAAAACAATCATTTTGCCACATAAGGGAAAAACCATCATTTTACCTCATAAGG
103159443 GAAAAATCGTCATTTT
66 GAAAAATCGTCATTTT
* * *
103159459 ATCACATAAGGGCAAAACAGTTATTTTGCCACATAAGGGCAAAACCATCATTTTACCTCATAAGG
1 ATCACATAAGGGCAAAACAATCATTTTGCCACATAAGGGAAAAACCATCATTTTACCTCATAAGG
* *
103159524 GCAAAATCTTCATTTT
66 GAAAAATCGTCATTTT
* *
103159540 ATCACATAACGGCAAAACTATCATTTT
1 ATCACATAAGGGCAAAACAATCATTTT
103159567 ATCTCATAAG
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.31
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACAATCATTTTGCCACATAAGGGAAAAACCATCATTTTACCTCATAAGG
GAAAAATCGTCATTTT
Found at i:103163037 original size:27 final size:27
Alignment explanation
Indices: 103162998--103163191 Score: 205
Period size: 27 Copynumber: 7.2 Consensus size: 27
103162988 ACATACATCA
* *
103162998 CATAGGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* *
103163025 CATAAGGGAAAAACCGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * *
103163052 CATAAGGGAAAAATCA-TCATTTTATCA
1 CATAAGGGCAAAA-CAGTCATTTTACCT
* *
103163079 CATAAGGGCAAAACAATCATTTTTCCAT
1 CATAAGGGCAAAACAGTCATTTTACC-T
* *
103163107 -ATAAGGGAAAAACCGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* * *
103163133 CATTAGGGCAAAATC-GTCATTTTATCA
1 CATAAGGGCAAAA-CAGTCATTTTACCT
*
103163160 CATAAGGGCAAAACAGTCATTTTATCT
1 CATAAGGGCAAAACAGTCATTTTACCT
103163187 CATAA
1 CATAA
103163192 AGGTTCAGGT
Statistics
Matches: 140, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.03
27 134 0.96
28 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCT
Found at i:103163089 original size:81 final size:81
Alignment explanation
Indices: 103162994--103163191 Score: 308
Period size: 81 Copynumber: 2.4 Consensus size: 81
103162984 ATATACATAC
* *
103162994 ATCACATAGGGGCAAAATAGTCATTTTACCTCATAAGGGAAAAACCGTCATTTTACCTCATAAGG
1 ATCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGAAAAACCGTCATTTTACCTCATAAGG
103163059 GAAAAATCATCATTTT
66 GAAAAATCATCATTTT
* * *
103163075 ATCACATAAGGGCAAAACAATCATTTTTCCAT-ATAAGGGAAAAACCGTCATTTTACCTCATTAG
1 ATCACATAAGGGCAAAACAGTCATTTTACC-TCATAAGGGAAAAACCGTCATTTTACCTCATAAG
* *
103163139 GGCAAAATCGTCATTTT
65 GGAAAAATCATCATTTT
*
103163156 ATCACATAAGGGCAAAACAGTCATTTTATCTCATAA
1 ATCACATAAGGGCAAAACAGTCATTTTACCTCATAA
103163192 AGGTTCAGGT
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 103 0.98
82 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (81 bp):
ATCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGAAAAACCGTCATTTTACCTCATAAGG
GAAAAATCATCATTTT
Found at i:103165365 original size:40 final size:40
Alignment explanation
Indices: 103165310--103165490 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
103165300 CATTTGAATG
*
103165310 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
103165350 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
103165390 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
103165430 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
103165470 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
103165491 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 116 0.90
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:103169896 original size:46 final size:46
Alignment explanation
Indices: 103169846--103170021 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
103169836 TGGTTGAGCA
103169846 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
103169892 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
103169937 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
103169985 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
103170022 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 28 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:103170002 original size:93 final size:93
Alignment explanation
Indices: 103169843--103170014 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
103169833 GGATGGTTGA
*
103169843 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
103169908 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
103169936 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
103170001 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
103170015 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:103171970 original size:47 final size:49
Alignment explanation
Indices: 103171894--103172026 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 49
103171884 TGTAACCCGC
103171894 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
103171944 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
103171987 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
103172027 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.40
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:103172042 original size:46 final size:44
Alignment explanation
Indices: 103171902--103172042 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 44
103171892 GCCCATAAGC
*
103171902 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
103171949 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
103171995 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
103172041 GA
1 GA
103172043 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:103185058 original size:18 final size:18
Alignment explanation
Indices: 103185035--103185082 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
103185025 TGGCCCATTA
*
103185035 CAGTAACAATAA-CTAGTG
1 CAGTAACAATAATC-AATG
*
103185053 CAGTAACAGTAATCAATG
1 CAGTAACAATAATCAATG
*
103185071 TAGTAACAATAA
1 CAGTAACAATAA
103185083 ACAGTATGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 24 0.96
19 1 0.04
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.23
Consensus pattern (18 bp):
CAGTAACAATAATCAATG
Found at i:103186300 original size:3 final size:3
Alignment explanation
Indices: 103186292--103186339 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
103186282 GGCATTCGGC
103186292 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
103186340 TATATATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:103188018 original size:68 final size:70
Alignment explanation
Indices: 103187946--103188143 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
103187936 ACACCCTGTA
* * * *
103187946 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
103188008 ATAAAT
65 ATAAAT
*
103188014 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
103188079 ATAAAT
65 ATAAAT
*
103188085 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
103188144 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:103188057 original size:41 final size:41
Alignment explanation
Indices: 103188012--103188129 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103188002 TGAAAGATAA
103188012 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103188053 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103188083 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103188124 ATGTAG
1 ATGTAG
103188130 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103188069 original size:71 final size:71
Alignment explanation
Indices: 103187980--103188143 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103187970 GAGATGTATC
103187980 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103188045 AGGACA
66 AGGACA
103188051 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103188116 AGGACA
66 AGGACA
103188122 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103188144 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103195589 original size:68 final size:70
Alignment explanation
Indices: 103195517--103195714 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
103195507 ACACCCTGTA
* * * *
103195517 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
103195579 ATAAAT
65 ATAAAT
*
103195585 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
103195650 ATAAAT
65 ATAAAT
*
103195656 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
103195715 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:103195628 original size:41 final size:41
Alignment explanation
Indices: 103195583--103195700 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103195573 TGAAAGATAA
103195583 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103195624 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103195654 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103195695 ATGTAG
1 ATGTAG
103195701 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103195640 original size:71 final size:71
Alignment explanation
Indices: 103195551--103195714 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103195541 GAGATGTATC
103195551 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103195616 AGGACA
66 AGGACA
103195622 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103195687 AGGACA
66 AGGACA
103195693 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103195715 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103198043 original size:40 final size:40
Alignment explanation
Indices: 103197988--103198086 Score: 180
Period size: 40 Copynumber: 2.5 Consensus size: 40
103197978 GATAGATAAT
*
103197988 GTAAAATATATCCGGGTTAAATCCCGCAGGCTTTGTGCTG
1 GTAAAATATATCCGGGTTAAATCCCGCAAGCTTTGTGCTG
103198028 GTAAAATATATCCGGGTTAAATCCCGCAAGCTTTGTGCTG
1 GTAAAATATATCCGGGTTAAATCCCGCAAGCTTTGTGCTG
*
103198068 GTAAAATATATCTGGGTTA
1 GTAAAATATATCCGGGTTA
103198087 TAAACCTAGC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (40 bp):
GTAAAATATATCCGGGTTAAATCCCGCAAGCTTTGTGCTG
Found at i:103203787 original size:28 final size:28
Alignment explanation
Indices: 103203747--103203827 Score: 121
Period size: 27 Copynumber: 2.9 Consensus size: 28
103203737 GTCACCAGAT
*
103203747 ACAGATATTTTGTGGCAGTGCCACCAAA
1 ACAGATAATTTGTGGCAGTGCCACCAAA
*
103203775 ACAGATAATTTGTGGCAGGGCCACC-AA
1 ACAGATAATTTGTGGCAGTGCCACCAAA
103203802 ACAGATAATTTGTGGCA-TAGCCACCA
1 ACAGATAATTTGTGGCAGT-GCCACCA
103203828 GGACGCTTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
27 25 0.52
28 23 0.48
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (28 bp):
ACAGATAATTTGTGGCAGTGCCACCAAA
Found at i:103203811 original size:27 final size:27
Alignment explanation
Indices: 103203728--103203827 Score: 119
Period size: 27 Copynumber: 3.6 Consensus size: 27
103203718 ATACAGAAAA
* * *
103203728 TGTGACAGAGTCACCAGATACAGATATTT
1 TGTGGCAGAGCCACCA-A-ACAGATAATT
*
103203757 TGTGGCAGTGCCACCAAAACAGATAATT
1 TGTGGCAGAGCCACC-AAACAGATAATT
*
103203785 TGTGGCAGGGCCACCAAACAGATAATT
1 TGTGGCAGAGCCACCAAACAGATAATT
*
103203812 TGTGGCATAGCCACCA
1 TGTGGCAGAGCCACCA
103203828 GGACGCTTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
27 26 0.41
28 23 0.37
29 13 0.21
30 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAAACAGATAATT
Found at i:103203981 original size:28 final size:28
Alignment explanation
Indices: 103203937--103203998 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
103203927 TTAACCCTAA
*
103203937 GGGTATAAAGGTCATTTTGCACACATAG
1 GGGTATAAAGGTAATTTTGCACACATAG
* *
103203965 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTTGCACACATAG
103203993 GGGTAT
1 GGGTAT
103203999 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.32
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTTGCACACATAG
Found at i:103205064 original size:12 final size:13
Alignment explanation
Indices: 103205045--103205077 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
103205035 GGGTTTGGCT
103205045 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
103205058 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
103205070 ATGGAGAA
1 ATGGAGAA
103205078 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:103206684 original size:28 final size:26
Alignment explanation
Indices: 103206652--103206704 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
103206642 TAAAATTTAT
103206652 AAAAACTAAAATTAAAATAAT-ATTAAAG
1 AAAAA-TAAAA-TAAAA-AATAATTAAAG
*
103206680 AAAAATGAAATAAAAAATAATTAAA
1 AAAAATAAAATAAAAAATAATTAAA
103206705 TAAGATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 3 0.13
26 11 0.48
27 4 0.17
28 5 0.22
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (26 bp):
AAAAATAAAATAAAAAATAATTAAAG
Found at i:103211289 original size:40 final size:40
Alignment explanation
Indices: 103211210--103211367 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
103211200 TTCGAATGAT
* * * *
103211210 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
103211250 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
103211290 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
103211330 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
103211368 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:103211388 original size:80 final size:80
Alignment explanation
Indices: 103211210--103211397 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
103211200 TTCGAATGAT
* *
103211210 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
103211275 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
103211290 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
103211351 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
103211371 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
103211398 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:103219763 original size:29 final size:29
Alignment explanation
Indices: 103219731--103219803 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
103219721 CTTCGAGCTC
*
103219731 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
103219760 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
103219789 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
103219804 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:103233808 original size:29 final size:29
Alignment explanation
Indices: 103233766--103233823 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
103233756 TAAATAAATT
103233766 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
103233795 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
103233824 TCGGTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (29 bp):
CTTTTTTGGAACTACATAGATCTATGGAA
Found at i:103235001 original size:14 final size:14
Alignment explanation
Indices: 103234982--103235009 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103234972 TATTTACCTT
103234982 CGATCAATATTATC
1 CGATCAATATTATC
103234996 CGATCAATATTATC
1 CGATCAATATTATC
103235010 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:103235576 original size:23 final size:23
Alignment explanation
Indices: 103235550--103235595 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
103235540 GGGATATTAG
103235550 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
103235573 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
103235596 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:103240270 original size:14 final size:15
Alignment explanation
Indices: 103240251--103240290 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
103240241 GAAGATGGAT
103240251 AAATAAA-AAAAAAG
1 AAATAAATAAAAAAG
*
103240265 AAATAAATAAAATAG
1 AAATAAATAAAAAAG
103240280 AATATAAATAA
1 AA-ATAAATAA
103240291 GATAAAGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (15 bp):
AAATAAATAAAAAAG
Found at i:103240970 original size:11 final size:11
Alignment explanation
Indices: 103240954--103240978 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
103240944 GCGATTATTG
103240954 TATTTATTGTA
1 TATTTATTGTA
103240965 TATTTATTGTA
1 TATTTATTGTA
103240976 TAT
1 TAT
103240979 AAATATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:103241601 original size:21 final size:21
Alignment explanation
Indices: 103241562--103241601 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
103241552 TTTATTTAAA
*
103241562 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
103241583 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
103241602 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:103241745 original size:14 final size:14
Alignment explanation
Indices: 103241726--103241754 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
103241716 TAGATAAATA
103241726 ATAATCTATATAAC
1 ATAATCTATATAAC
103241740 ATAATCTATATAAC
1 ATAATCTATATAAC
103241754 A
1 A
103241755 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:103243466 original size:19 final size:19
Alignment explanation
Indices: 103243442--103243481 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
103243432 TTTTTTTTTT
* *
103243442 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
103243461 ATTAGAATAGAAAAGTATA
1 ATTAGAATAGAAAAGTATA
103243480 AT
1 AT
103243482 AAAAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:103245000 original size:16 final size:16
Alignment explanation
Indices: 103244979--103245011 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
103244969 TCTTATTCCT
*
103244979 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
103244995 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
103245011 T
1 T
103245012 AGAATACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:103250714 original size:14 final size:14
Alignment explanation
Indices: 103250695--103250723 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
103250685 ACAGATGGAT
103250695 TCGTATAATTCTTA
1 TCGTATAATTCTTA
103250709 TCGTATAATTCTTA
1 TCGTATAATTCTTA
103250723 T
1 T
103250724 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:103254956 original size:20 final size:21
Alignment explanation
Indices: 103254890--103254958 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
103254880 TCACTTCGTT
103254890 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
103254911 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
103254932 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
103254953 -CTTTTT
1 TCTTTTT
103254959 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:103257357 original size:18 final size:18
Alignment explanation
Indices: 103257324--103257417 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
103257314 AAGGTTTTCT
103257324 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
103257339 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
103257357 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
103257375 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
103257393 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
103257411 TATTGAT
1 TATTGAT
103257418 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:103265684 original size:14 final size:14
Alignment explanation
Indices: 103265665--103265692 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103265655 TATATTAGTA
103265665 TTTTCTATTCTATT
1 TTTTCTATTCTATT
103265679 TTTTCTATTCTATT
1 TTTTCTATTCTATT
103265693 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:103265700 original size:6 final size:6
Alignment explanation
Indices: 103265689--103265767 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
103265679 TTTTCTATTC
* *
103265689 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
103265736 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
103265768 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:103265715 original size:11 final size:11
Alignment explanation
Indices: 103265690--103265771 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
103265680 TTTCTATTCT
103265690 ATTAGTATTAG
1 ATTAGTATTAG
103265701 ---AGTATTAG
1 ATTAGTATTAG
**
103265709 ATTAGTATTCT
1 ATTAGTATTAG
*
103265720 ATT-CTATTAG
1 ATTAGTATTAG
103265730 TATTAG-ATTAG
1 -ATTAGTATTAG
103265741 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
103265756 ATTAGTATTAG
1 ATTAGTATTAG
103265767 -TTAGT
1 ATTAGT
103265772 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:103265756 original size:20 final size:21
Alignment explanation
Indices: 103265726--103265771 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
103265716 TTCTATTCTA
103265726 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
103265747 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
103265767 TTAGT
1 TTAGT
103265772 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:103273984 original size:32 final size:32
Alignment explanation
Indices: 103273943--103274004 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
103273933 CATCTATTTT
103273943 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
103273975 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
103274005 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:103278148 original size:22 final size:22
Alignment explanation
Indices: 103278122--103278165 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
103278112 TTATCTCTTT
103278122 TGATTGAAAAGGAGCAATAAAA
1 TGATTGAAAAGGAGCAATAAAA
103278144 TGATTGAAAAGGAGCAATAAAA
1 TGATTGAAAAGGAGCAATAAAA
103278166 AAATCGAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.23, T:0.18
Consensus pattern (22 bp):
TGATTGAAAAGGAGCAATAAAA
Found at i:103280421 original size:21 final size:21
Alignment explanation
Indices: 103280397--103280440 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
103280387 ACGACCTAAT
*
103280397 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATACAATAAA
*
103280418 TAAATAAAATGATACAATAAA
1 TAAATAAAAGGATACAATAAA
103280439 TA
1 TA
103280441 CTAAAGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (21 bp):
TAAATAAAAGGATACAATAAA
Found at i:103290364 original size:13 final size:13
Alignment explanation
Indices: 103290346--103290373 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
103290336 AATATAGGGG
103290346 AAAATGTACCATT
1 AAAATGTACCATT
103290359 AAAATGTACCATT
1 AAAATGTACCATT
103290372 AA
1 AA
103290374 CGAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:103297705 original size:32 final size:32
Alignment explanation
Indices: 103297669--103297730 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
103297659 AGCTTTTGGT
103297669 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
103297701 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
103297731 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:103305917 original size:6 final size:6
Alignment explanation
Indices: 103305906--103305984 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
103305896 GGGATCACTA
103305906 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
103305949 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
103305985 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:103305928 original size:20 final size:21
Alignment explanation
Indices: 103305902--103305947 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
103305892 AGCCGGGATC
103305902 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
103305923 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
103305943 ACTAA
1 ACTAA
103305948 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:103305972 original size:11 final size:11
Alignment explanation
Indices: 103305902--103305948 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
103305892 AGCCGGGATC
103305902 ACTAA-CTAAT
1 ACTAATCTAAT
103305912 ACTAATCTAAT
1 ACTAATCTAAT
103305923 -CTAA-CTAAT
1 ACTAATCTAAT
103305932 ACTAATCTAAT
1 ACTAATCTAAT
103305943 ACTAAT
1 ACTAAT
103305949 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:103305998 original size:14 final size:14
Alignment explanation
Indices: 103305981--103306008 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103305971 CTCTAATACT
103305981 AATAGAATAGAAAA
1 AATAGAATAGAAAA
103305995 AATAGAATAGAAAA
1 AATAGAATAGAAAA
103306009 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:103314336 original size:18 final size:18
Alignment explanation
Indices: 103314257--103314350 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
103314247 CAAGGTCACG
*
103314257 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
103314275 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
103314293 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
103314311 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
103314329 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
103314344 ATCAATA
1 ATCAATA
103314351 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:103314337 original size:9 final size:9
Alignment explanation
Indices: 103314257--103314337 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
103314247 CAAGGTCACG
*
103314257 ATCAATAGC
1 ATCAATATC
* *
103314266 GTCACTATC
1 ATCAATATC
*
103314275 ATCAATAGC
1 ATCAATATC
* * *
103314284 GTCACTAGC
1 ATCAATATC
103314293 ATCAATATC
1 ATCAATATC
* * *
103314302 GTCACTAGC
1 ATCAATATC
103314311 ATCAATATC
1 ATCAATATC
* *
103314320 GTCACTATC
1 ATCAATATC
103314329 ATCAATATC
1 ATCAATATC
103314338 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:103316746 original size:21 final size:21
Alignment explanation
Indices: 103316716--103316804 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
103316706 CTCACAAAGA
* *
103316716 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
103316736 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
103316757 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
103316778 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
103316802 AAA
1 AAA
103316805 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:103316797 original size:24 final size:21
Alignment explanation
Indices: 103316716--103316784 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
103316706 CTCACAAAGA
* * *
103316716 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
103316736 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
103316757 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
103316778 AAAAAGA
1 AAAAAGA
103316785 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:103322669 original size:40 final size:39
Alignment explanation
Indices: 103322603--103322753 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
103322593 AAATTGAATG
* * *
103322603 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
103322642 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
103322682 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
103322722 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
103322754 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:103322767 original size:40 final size:39
Alignment explanation
Indices: 103322640--103322769 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
103322630 ATGCTGGAAA
* *
103322640 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
103322680 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
103322720 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
103322760 TTATATCCGG
1 TTATATCCGG
103322770 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:103336456 original size:5 final size:5
Alignment explanation
Indices: 103336448--103336489 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
103336438 ATTTTATGTT
*
103336448 ATATA ATAT- A-ATA ATATA ATATA ATATA ACAATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA A-TATA ATATA ATA
103336490 ACATAATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 24 0.75
6 4 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:103336466 original size:13 final size:13
Alignment explanation
Indices: 103336448--103336498 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
103336438 ATTTTATGTT
103336448 ATATAATATAATA
1 ATATAATATAATA
103336461 ATATAATATAATATA
1 ATATAATAT-A-ATA
*
103336476 ACAATAATATAATA
1 A-TATAATATAATA
*
103336490 ACATAATAT
1 ATATAATAT
103336499 CATTTACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 16 0.48
14 5 0.15
15 5 0.15
16 7 0.21
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:103352723 original size:40 final size:40
Alignment explanation
Indices: 103352675--103352866 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
103352665 ATAACAACTC
*
103352675 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
103352715 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
103352755 GCACAAATGCCTTCGGGTCTTAGCCCGAATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
103352795 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* ** *
103352835 GCACAAAAGCCTTTAGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
103352867 CATTCGAATA
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:103352803 original size:80 final size:80
Alignment explanation
Indices: 103352651--103352866 Score: 255
Period size: 80 Copynumber: 2.7 Consensus size: 80
103352641 AGTATCTTTG
* *
103352651 GGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCC-AGATATAGTCA
1 GGATCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGA-ATATAGTCA
*
103352712 CTAGCATAAATGCCTTC
64 CTAGCACAAATGCCTTC
*
103352729 GGGA-CTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGAATATAG-CAA
1 -GGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGAATATAGTC-A
*
103352792 CTCGCACAAATGCCTTC
64 CTAGCACAAATGCCTTC
* * ** * *
103352809 GGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTTAGGACTTAGCCCGGATAT
1 GGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGAATAT
103352867 CATTCGAATA
Statistics
Matches: 119, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
79 11 0.09
80 106 0.89
81 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (80 bp):
GGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGAATATAGTCACT
AGCACAAATGCCTTC
Found at i:103360988 original size:40 final size:40
Alignment explanation
Indices: 103360906--103361126 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
103360896 ACTCAAGTAT
* *
103360906 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
103360945 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATTC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
103360985 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
103361025 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
103361065 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
103361105 CTTTGGGACTTAGCCCAGATAT
1 CTTCGGGTCTTAGCCCGGATAT
103361127 CATTCGAATA
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 144 0.91
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:103369826 original size:43 final size:43
Alignment explanation
Indices: 103369778--103369923 Score: 142
Period size: 43 Copynumber: 3.4 Consensus size: 43
103369768 TGTGATTTCA
103369778 TGTAAGACCATG-CTTGGGACATTGGCCAT-GTATTA-AGATTACG
1 TGTAAGACCATGTC-TGGGACATTGG-CATCGTATTATA-ATTACG
*
103369821 TGTAAGACCATGTCTGGGACATTGGCATCGTATTATAATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTATAATTACG
* * **
103369864 TGTAAGACTC-TGTCTGGGAAAGTGGCATCGATATGTAT--TTATA
1 TGTAAGAC-CATGTCTGGGACATTGGCATCG-TAT-TATAATTACG
*
103369907 TGTAAGACCATATCTGG
1 TGTAAGACCATGTCTGG
103369924 CATTGTACGA
Statistics
Matches: 89, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
42 4 0.04
43 76 0.85
44 6 0.07
45 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTATAATTACG
Found at i:103374995 original size:10 final size:10
Alignment explanation
Indices: 103374970--103375008 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
103374960 GTGCAATTCT
*
103374970 ATCAAAAATA
1 ATCAAAATTA
*
103374980 ACCAAAATTA
1 ATCAAAATTA
103374990 ATCAAAATTA
1 ATCAAAATTA
*
103375000 ATTAAAATT
1 ATCAAAATT
103375009 CAACATGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:103387129 original size:27 final size:26
Alignment explanation
Indices: 103387102--103387363 Score: 292
Period size: 27 Copynumber: 9.8 Consensus size: 26
103387092 ACCAAAGTAC
103387102 CCCT-GATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTA-CGTTTTA
* *
103387128 CCCCCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAGAATTA-CGTTTTA
*
103387155 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTA-CGTTTTA
103387182 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTAC-GTTTTA
* *
103387209 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTA-CGTTTTA
* *
103387236 CCCTTGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTAC-GTTTTA
* * *
103387263 CCCTCGATTTACAAAATTATCATTTCA
1 CCCTCGATTTACAGAATTA-CGTTTTA
* * *
103387290 CCGTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTAC-GTTTTA
* *
103387317 CCCTTGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTAC-GTTTTA
*
103387344 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
103387364 AGAAATACCC
Statistics
Matches: 206, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.03
27 198 0.96
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (26 bp):
CCCTCGATTTACAGAATTACGTTTTA
Found at i:103387146 original size:54 final size:54
Alignment explanation
Indices: 103387088--103387391 Score: 198
Period size: 54 Copynumber: 5.6 Consensus size: 54
103387078 CGACTTGTAA
* * *
103387088 AATTACCAAAGTACCC-CTGATTTACAGAATTATCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCTC-GATTTACAAAATTACCGTTTTACCCCCGATTTACAG
**** *
103387142 AATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTACAG
***** * ** *
103387196 AATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTACAG
***** * * * ** *
103387250 AATTACTGTTTTACCCTCGATTTACAAAATTATCATTTCACCGTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTACAG
* *** * * ** * *
103387304 AATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAA
1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTACAG
* * **
103387358 AATTA-CAGAAATACCCTCAATTTGTAAAATTACC
1 AATTACCA-AAGTACCCTCGATTTACAAAATTACC
103387392 AAAATACCCC
Statistics
Matches: 211, Mismatches: 37, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
53 1 0.00
54 209 0.99
55 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTACAG
Found at i:103387171 original size:81 final size:81
Alignment explanation
Indices: 103387102--103387362 Score: 337
Period size: 81 Copynumber: 3.2 Consensus size: 81
103387092 ACCAAAGTAC
* * * *
103387102 CCCT-GATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTA
103387166 CAAAATTACCGTTTTA
66 CAAAATTACCGTTTTA
103387182 CCCTCGATTTACAGAATTA-CTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTT
1 CCCTCGATTTACAGAATTATC-GTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTT
* * *
103387246 ATAGAATTACTGTTTTA
65 ACAAAATTACCGTTTTA
* * * * * **
103387263 CCCTCGATTTACAAAATTATCATTTCACCGTCGATTTATAGAATTACTATTTTACCCTTGATTTA
1 CCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTA
* **
103387328 CAGAATTACTATTTTA
66 CAAAATTACCGTTTTA
*
103387344 CCCTCGATTTACAAAATTA
1 CCCTCGATTTACAGAATTA
103387363 CAGAAATACC
Statistics
Matches: 162, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
80 5 0.03
81 156 0.96
82 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTA
CAAAATTACCGTTTTA
Found at i:103387372 original size:27 final size:27
Alignment explanation
Indices: 103386999--103387565 Score: 133
Period size: 27 Copynumber: 20.9 Consensus size: 27
103386989 AATACTTTAG
* * *
103386999 TTTACTAAAATTACCGAAATACCCTTAGT
1 TTTAC-AAAATTACAGAAATACCC-TCGA
*
103387028 TTGTA-AAAA-TACTGAAATACCCTCGA
1 TT-TACAAAATTACAGAAATACCCTCGA
** * *
103387054 TTTGTAAAATTACTGAAATACCTTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ** *
103387081 CTTGTAAAATTACCA-AAGTACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* *** *
103387108 TTTACAGAATTATC-GTTTTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * ***
103387135 TTTACATAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ***
103387162 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * ***
103387189 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * *** *
103387216 TTTATAAAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * * ***
103387243 TTTATAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
** *
103387270 TTTACAAAATTATC--ATTTCACCGTCGA
1 TTTACAAAATTA-CAGAAAT-ACCCTCGA
* * *** *
103387297 TTTATAGAATTACTA-TTTTACCCTTGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
* ***
103387324 TTTACAGAATTACTA-TTTTACCCTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
*
103387351 TTTACAAAATTACAGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
** *
103387378 TTTGTAAAATTACCA-AAATACCC-CTA
1 TTTACAAAATTA-CAGAAATACCCTCGA
** * *
103387404 GTTTGTAAAATTACCA-AAATATCACT-GG
1 -TTTACAAAATTA-CAGAAATA-CCCTCGA
*** * *
103387432 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
**
103387459 TTTGTAAAATTACCA-AAATACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* * *
103387486 TTTACAAAGTTACAGAAATACCTTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * * *
103387513 CTTT-CTAAAAATTATAGAAATACCATTGG
1 -TTTAC--AAAATTACAGAAATACCCTCGA
103387542 TTTACAAAATTACTA-AAATACCCT
1 TTTACAAAATTAC-AGAAATACCCT
103387566 TGGTTTGTAG
Statistics
Matches: 440, Mismatches: 70, Indels: 58
0.77 0.12 0.10
Matches are distributed among these distances:
25 1 0.00
26 24 0.05
27 370 0.84
28 22 0.05
29 21 0.05
30 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCCTCGA
Found at i:103387389 original size:81 final size:80
Alignment explanation
Indices: 103387102--103387392 Score: 334
Period size: 81 Copynumber: 3.6 Consensus size: 80
103387092 ACCAAAGTAC
* * * * * * *
103387102 CCCT-GATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTACAAAATTA-CGATTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTA
* *
103387166 CAAAATTACCGTTTTA
65 CAGAATTACTGTTTTA
* * *
103387182 CCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTA
1 CCCTCGATTTACAAAATTAC-GATTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTA
*
103387247 TAGAATTACTGTTTTA
65 CAGAATTACTGTTTTA
* * *
103387263 CCCTCGATTTACAAAATTATC-ATTTCACCGTCGATTTATAGAATTACTATTTTACCCTTGATTT
1 CCCTCGATTTACAAAATTA-CGATTT-ACCCTCGATTTATAAAATTACCATTTTACCCTTGATTT
*
103387327 ACAGAATTACTATTTTA
64 ACAGAATTACTGTTTTA
** * *
103387344 CCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAATTACCA
1 CCCTCGATTTACAAAATTAC-GATTTACCCTCGATTTATAAAATTACCA
103387393 AAATACCCCT
Statistics
Matches: 183, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
80 9 0.05
81 171 0.93
82 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (80 bp):
CCCTCGATTTACAAAATTACGATTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTAC
AGAATTACTGTTTTA
Found at i:103387400 original size:81 final size:80
Alignment explanation
Indices: 103387153--103387491 Score: 236
Period size: 81 Copynumber: 4.2 Consensus size: 80
103387143 ATTACCGTTT
* * * * *** *
103387153 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-GAAATACCCTCAATT
****
103387218 TATAAAATTACCGTTT
65 TATAAAATTACCAAAA
* ** ** * *
103387234 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATC-ATTTCACCGTCGAT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA-CGAAAT-ACCCTCAAT
* * ***
103387298 TTATAGAATTACTATTT
64 TTATAAAATTACCAAAA
*
103387315 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-GAAATACCCTCAATT
*
103387380 TGTAAAATTACCAAAA
65 TATAAAATTACCAAAA
* * *** * * ***
103387396 TACCCCTAGTTTGTA-A-AATTACCAAAATATCACT-GGTTTGTGAAATTACCGAAATACCCTCA
1 TA-CCCTTGATT-TACAGAATTACCATTTTA-CCCTCGATTTACAAAATTA-CGAAATACCCTCA
*
103387458 ATTTGTAAAATTACCAAAA
62 ATTTATAAAATTACCAAAA
*
103387477 TACCCCTGATTTACA
1 TACCCTTGATTTACA
103387492 AAGTTACAGA
Statistics
Matches: 213, Mismatches: 36, Indels: 19
0.79 0.13 0.07
Matches are distributed among these distances:
79 2 0.01
80 11 0.05
81 183 0.86
82 15 0.07
83 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (80 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACGAAATACCCTCAATTT
ATAAAATTACCAAAA
Found at i:103387414 original size:54 final size:53
Alignment explanation
Indices: 103387342--103387481 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 53
103387332 ATTACTATTT
* **
103387342 TACCCTCGATTTACAAAATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCA-AAATACCCT-AATTTGTAAAATTACCAAAA
* * ** * *
103387396 TACCC-CTAGTTTGTAAAATTACCAAAATATCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATA-CCCTAATTTGTAAAATTACCAAAA
103387450 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
103387482 CTGATTTACA
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
53 3 0.04
54 62 0.87
55 6 0.08
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTAATTTGTAAAATTACCAAAA
Found at i:103387568 original size:27 final size:27
Alignment explanation
Indices: 103387315--103387594 Score: 122
Period size: 27 Copynumber: 10.3 Consensus size: 27
103387305 ATTACTATTT
* * ***
103387315 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACCAAAA
*
103387342 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
** **
103387369 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
103387396 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* * *** *
103387423 TATCAC-TGGTTTGTGAAATTACCGAAA
1 TA-CCCTTGATTTACAAAATTACCAAAA
** **
103387450 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *
103387477 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAA
* *
103387504 TACCTTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACCA-AAA
* * *
103387533 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* ** * *
103387560 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
103387587 CACCCTTG
1 TACCCTTG
103387595 TAGGATGAAA
Statistics
Matches: 201, Mismatches: 40, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
26 6 0.03
27 164 0.82
28 12 0.06
29 19 0.09
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:103387655 original size:27 final size:27
Alignment explanation
Indices: 103387624--103387716 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
103387614 TACCCCTATT
*
103387624 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
103387651 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
103387678 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
103387705 TGGTAAAATGAC
1 AGGTAAAATGAC
103387717 GAATATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:103388907 original size:25 final size:25
Alignment explanation
Indices: 103388878--103388925 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
103388868 TTATAATATG
* * *
103388878 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
103388903 AAAATAACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
103388926 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:103388976 original size:9 final size:9
Alignment explanation
Indices: 103388964--103389020 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
103388954 TTTGATAAAC
103388964 ATGATATGT
1 ATGATATGT
*
103388973 ATGATATGCAC
1 ATGATATG--T
*
103388984 ATGACATGT
1 ATGATATGT
*
103388993 ATGATATGCAC
1 ATGATATG--T
103389004 ATGATATGT
1 ATGATATGT
103389013 ATGATATG
1 ATGATATG
103389021 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:103388987 original size:20 final size:20
Alignment explanation
Indices: 103388962--103389024 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
103388952 ATTTTGATAA
103388962 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
103388982 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
103389002 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
103389022 ACA
1 ACA
103389025 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:103389134 original size:24 final size:24
Alignment explanation
Indices: 103389078--103389243 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
103389068 GAGGAAGTGA
103389078 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
103389101 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
103389125 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
103389149 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
103389173 AAAA-GGCTTATGCCCCAATTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
103389196 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
103389220 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
103389244 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
23 42 0.33
24 74 0.58
25 11 0.09
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:103389147 original size:47 final size:48
Alignment explanation
Indices: 103389078--103389244 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
103389068 GAGGAAGTGA
* *
103389078 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
* *
103389125 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
* *
103389173 AAAA-GGCTTATGCCCCAATTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
*
103389220 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
103389245 TGATAAAGCA
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
47 66 0.62
48 30 0.28
49 11 0.10
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
Found at i:103389200 original size:71 final size:71
Alignment explanation
Indices: 103389078--103389243 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
103389068 GAGGAAGTGA
* * * *
103389078 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
103389143 GTTATC
66 GTTATC
*
103389149 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAATTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
*
103389214 GTTATT
66 GTTATC
*
103389220 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
103389244 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:103389471 original size:31 final size:31
Alignment explanation
Indices: 103389436--103389499 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
103389426 CGTTTACAGC
* *
103389436 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
103389467 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
103389498 AA
1 AA
103389500 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:103395631 original size:40 final size:40
Alignment explanation
Indices: 103395537--103395727 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
103395527 TGGATGATAA
* * * * * **
103395537 CCGGGCTAAGTCCTGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
103395577 CCGGGC-AAGTCCCGAAGCCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
103395616 CCGGGCTATGTCCCGAAGGCATTTGGGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
103395656 CCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
103395696 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
103395728 AGCTATATCC
Statistics
Matches: 129, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.24
40 96 0.74
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:103398929 original size:275 final size:275
Alignment explanation
Indices: 103398438--103398990 Score: 890
Period size: 275 Copynumber: 2.0 Consensus size: 275
103398428 AATCAGCTTC
* *
103398438 GTGGGGCTTCAATATTCTCGAAAATAGATTTCTATTTTGGGTATCATTAGCTTAGAGTTAAGGAA
1 GTGGGGCTTCAATATTCTCGAAAATAGATTTCTATTCTGGGTATCATCAGCTTAGAGTTAAGGAA
103398503 GTTGATATTCATAAAATGGCTTTCAGGACTCATTATGGGCACTACGAGTTCCTAATCATGCCCTT
66 GTTGATATTCATAAAATGGCTTTCAGGACTCATTATGGGCACTACGAGTTCCTAATCATGCCCTT
** * *
103398568 TGGTTTGACGAATGCTCCGGCTACATTCATGGATCTGATGAATTAGGTTTTCCAACTGTATTTGG
131 TGGTTTGAAAAATGCTCCAGCTACATTCATGGATCTGATGAATCAGGTTTTCCAACTGTATTTGG
** * * *
103398633 ATCAGTTCATTGTAGCCTTCATCGACGATATTCTGGCGTACTCTAAGACCAAAGAGGAGCATGAT
196 ATCAGTTCATCATAGCCTTCATCAACAATATTCTGGCGTACTCTAAGACCAAAGAGAAGCATGAT
103398698 GAGCATCTTAGAGTA
261 GAGCATCTTAGAGTA
* * * * *
103398713 GTGGGGCTTCAGTATTCTTGAAAATAGATTTCTGTTCTGGGTATCATCAGTTTAGGGTTAAGGAA
1 GTGGGGCTTCAATATTCTCGAAAATAGATTTCTATTCTGGGTATCATCAGCTTAGAGTTAAGGAA
* *
103398778 GTTGATGTTCATAAAATGGCTTTTAGGACTCATTATGGGCACTACGAGTTCCTAATCATGCCCTT
66 GTTGATATTCATAAAATGGCTTTCAGGACTCATTATGGGCACTACGAGTTCCTAATCATGCCCTT
* * *
103398843 TGGTTTGAAAAATGTTCTATCTACATTCATGGATCTGATGAATCAGGTTTTCCAACTGTATTTGG
131 TGGTTTGAAAAATGCTCCAGCTACATTCATGGATCTGATGAATCAGGTTTTCCAACTGTATTTGG
* * *
103398908 ATTAGTTCATCATAGCCTTCATCAACAATATTCTGGTGTACTCTAAGACCGAAGAGAAGCATGAT
196 ATCAGTTCATCATAGCCTTCATCAACAATATTCTGGCGTACTCTAAGACCAAAGAGAAGCATGAT
103398973 GAGCATCTTAGAGTA
261 GAGCATCTTAGAGTA
103398988 GTG
1 GTG
103398991 CTTCTGATAC
Statistics
Matches: 254, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
275 254 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (275 bp):
GTGGGGCTTCAATATTCTCGAAAATAGATTTCTATTCTGGGTATCATCAGCTTAGAGTTAAGGAA
GTTGATATTCATAAAATGGCTTTCAGGACTCATTATGGGCACTACGAGTTCCTAATCATGCCCTT
TGGTTTGAAAAATGCTCCAGCTACATTCATGGATCTGATGAATCAGGTTTTCCAACTGTATTTGG
ATCAGTTCATCATAGCCTTCATCAACAATATTCTGGCGTACTCTAAGACCAAAGAGAAGCATGAT
GAGCATCTTAGAGTA
Found at i:103399883 original size:21 final size:21
Alignment explanation
Indices: 103399859--103399898 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
103399849 CTTCAGTCTT
103399859 GATG-ATGAATCCAGCTTCTGA
1 GATGAATGAAT-CAGCTTCTGA
*
103399880 GATGAATTAATCAGCTTCT
1 GATGAATGAATCAGCTTCT
103399899 TTGGAGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (21 bp):
GATGAATGAATCAGCTTCTGA
Found at i:103406793 original size:40 final size:40
Alignment explanation
Indices: 103406696--103406861 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
103406686 CGAATGGTAT
* * * * *
103406696 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
103406737 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
103406777 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
103406817 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
103406857 CCGGG
1 CCGGG
103406862 CTATGTCCTG
Statistics
Matches: 114, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:103406887 original size:80 final size:80
Alignment explanation
Indices: 103406733--103406888 Score: 204
Period size: 80 Copynumber: 1.9 Consensus size: 80
103406723 CTAAGTGACT
* * * * *
103406733 AAAATCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCA
1 AAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACA
* * *
103406798 TTTGTGCGAGTTACC
66 ATCGAGCGAGTTACC
* * * *
103406813 AAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCTGAAGACA
1 AAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACA
103406878 ATCGAGCGAGT
66 ATCGAGCGAGT
103406889 CGCTATATCC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (80 bp):
AAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACA
ATCGAGCGAGTTACC
Found at i:103413525 original size:47 final size:47
Alignment explanation
Indices: 103413462--103413651 Score: 258
Period size: 47 Copynumber: 4.1 Consensus size: 47
103413452 TTAGGATTTT
* * *
103413462 AATGTGA-GAATATGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
103413508 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
103413555 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * * *
103413602 GATGTAATGAATGTGAACATGTATATATGTGGTAAGG-CGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
103413648 AATG
1 AATG
103413652 CGAAATGTGT
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
46 18 0.14
47 113 0.86
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:103413761 original size:46 final size:46
Alignment explanation
Indices: 103413626--103413761 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
103413616 GAACATGTAT
* *
103413626 ATATGTGGT-AAGGCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
103413671 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
103413717 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
103413762 TGTATATATA
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 7 0.09
46 71 0.91
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:103417831 original size:47 final size:47
Alignment explanation
Indices: 103417762--103417854 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
103417752 CTGTCAGGAG
* *
103417762 AGGATTTAGGAGTTGATAAGGGATAGGATTTA-GAGTTGATAAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAG-TGATAAGGGAT
*
103417809 AGGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGTGATTAGGGA
1 AGGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGTGATAAGGGA
103417855 GAATGTGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 39 0.93
48 3 0.07
ACGTcount: A:0.33, C:0.01, G:0.39, T:0.27
Consensus pattern (47 bp):
AGGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGTGATAAGGGAT
Found at i:103417855 original size:23 final size:24
Alignment explanation
Indices: 103417758--103417856 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
103417748 AAGTCTGTCA
103417758 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
*
103417782 GGATAGGATTTA-GAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
* *
103417805 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
*
103417829 GGAGAGGATTTAGGAG-TGATTAG
1 GGAGAGGATTTAGGAGTTGATAAG
103417852 GGAGA
1 GGAGA
103417857 ATGTGTTGGC
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
23 34 0.49
24 36 0.51
ACGTcount: A:0.33, C:0.01, G:0.40, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGTTGATAAG
Found at i:103418029 original size:36 final size:37
Alignment explanation
Indices: 103417980--103418050 Score: 90
Period size: 38 Copynumber: 1.9 Consensus size: 37
103417970 AGTTGTGCCG
*
103417980 TTTTTCTGACCATC-CTTCCTCCTCTTCTCTTCTTTT
1 TTTTTCTCACCATCACTTCCTCCTCTTCTCTTCTTTT
* * *
103418016 TTTTTCTCTCCATCTACTTTCTCCTCTTCTTTTCT
1 TTTTTCTCACCATC-ACTTCCTCCTCTTCTCTTCT
103418051 CCATAGCCGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 12 0.41
38 17 0.59
ACGTcount: A:0.06, C:0.35, G:0.01, T:0.58
Consensus pattern (37 bp):
TTTTTCTCACCATCACTTCCTCCTCTTCTCTTCTTTT
Found at i:103419310 original size:25 final size:26
Alignment explanation
Indices: 103419256--103419364 Score: 157
Period size: 27 Copynumber: 4.2 Consensus size: 26
103419246 AGGAAGCGTC
* *
103419256 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACA-TTATCTGTT
103419283 CTGGTGGCTCTGCCACA-TATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
103419308 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
103419335 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
103419361 CTGG
1 CTGG
103419365 CAGCAATGCT
Statistics
Matches: 76, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
25 23 0.30
26 15 0.20
27 38 0.50
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:103419338 original size:52 final size:53
Alignment explanation
Indices: 103419256--103419364 Score: 166
Period size: 52 Copynumber: 2.1 Consensus size: 53
103419246 AGGAAGCGTC
* *
103419256 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTGCCACA-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
* * *
103419308 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
103419361 CTGG
1 CTGG
103419365 CAGCAATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 39 0.76
53 12 0.24
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:103425633 original size:24 final size:24
Alignment explanation
Indices: 103425534--103425634 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
103425524 AAGTCTGTCA
*
103425534 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
103425558 GGATAGGATTTAGGAGATCATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
103425582 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
103425606 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
103425630 GGAGA
1 GGAGA
103425635 ACAGTGTTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.34, C:0.03, G:0.40, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:103427123 original size:54 final size:53
Alignment explanation
Indices: 103427031--103427141 Score: 132
Period size: 54 Copynumber: 2.1 Consensus size: 53
103427021 AGGAAGCATC
* * * *
103427031 CTGGTGGCTATGCCACATTTATCTGATCTTATGGCTCTGCCATATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACAT-TATCTGTT
* * * * *
103427085 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACCTTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATTATCTGTT
103427138 CTGG
1 CTGG
103427142 CAGCAATGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
53 12 0.25
54 36 0.75
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.40
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATTATCTGTT
Found at i:103427139 original size:26 final size:27
Alignment explanation
Indices: 103427031--103427141 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
103427021 AGGAAGCATC
* * * *
103427031 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGACTCTGCCACAATTATCTGTT
** * *
103427058 CTTATGGCTCTGCCA-TATATATCTGTT
1 CTGGTGACTCTGCCACAAT-TATCTGTT
*
103427085 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGACTCTGCCACAATTATCTGTT
* *
103427112 CTGGTGACTCTGTCAC-CTTATCTGTT
1 CTGGTGACTCTGCCACAATTATCTGTT
103427138 CTGG
1 CTGG
103427142 CAGCAATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.20
27 54 0.77
28 2 0.03
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.40
Consensus pattern (27 bp):
CTGGTGACTCTGCCACAATTATCTGTT
Found at i:103430489 original size:40 final size:40
Alignment explanation
Indices: 103430422--103430555 Score: 134
Period size: 40 Copynumber: 3.3 Consensus size: 40
103430412 CAAATTTGTT
103430422 TGGCACTTAGTGTGCGATTGGAGATAGC-TTCGGCTATATA
1 TGGCACTTAGTGTGCGATTGGAGATAGCGTT-GGCTATATA
103430462 -GAGCACTTAGTGTGCGACTTGGA-ATAGCGTTGGCTATATA
1 TG-GCACTTAGTGTGCGA-TTGGAGATAGCGTTGGCTATATA
* * * *
103430502 TGGCAGTTAGTGTACGAATAT-GAGATAGCTTTGACTATGA-A
1 TGGCACTTAGTGTGCG-AT-TGGAGATAGCGTTGGCTAT-ATA
*
103430543 AGGCACTTAGTGT
1 TGGCACTTAGTGT
103430556 TCGAGATTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
39 1 0.01
40 44 0.55
41 34 0.43
42 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTGGAGATAGCGTTGGCTATATA
Found at i:103430553 original size:41 final size:39
Alignment explanation
Indices: 103430423--103430581 Score: 119
Period size: 41 Copynumber: 3.9 Consensus size: 39
103430413 AAATTTGTTT
* *
103430423 GGCACTTAGTGTGCG-ATTGGAGATAGCTTCGGCTATATA
1 GGCACTTAGTGTGCGAATT-GAGATAGCTTCGACTATAAA
* * *
103430462 GAGCACTTAGTGTGCGACTTG-GAATAGCGTT-GGCTATATAT
1 G-GCACTTAGTGTGCGAATTGAG-ATAGC-TTCGACTATA-AA
* * *
103430503 GGCAGTTAGTGTACGAATATGAGATAGCTTTGACTATGAAA
1 GGCACTTAGTGTGCGAAT-TGAGATAGCTTCGACTAT-AAA
* *
103430544 GGCACTTAGTGTTCGAGATT-ATAATAGCTTCGACTATA
1 GGCACTTAGTGTGCGA-ATTGA-GATAGCTTCGACTATA
103430582 CTTTGGCACT
Statistics
Matches: 97, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
39 2 0.02
40 45 0.46
41 46 0.47
42 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (39 bp):
GGCACTTAGTGTGCGAATTGAGATAGCTTCGACTATAAA
Found at i:103430607 original size:42 final size:42
Alignment explanation
Indices: 103430544--103430641 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
103430534 GACTATGAAA
* * *
103430544 GGCACTTAGTGTTCGAGATTATAATAGCTTCGACTATACTTT
1 GGCACTCAGTGTGCGACATTATAATAGCTTCGACTATACTTT
* * *
103430586 GGCACTCATTGTGCGACATTATAATAGCTTCGGCTATCCTTT
1 GGCACTCAGTGTGCGACATTATAATAGCTTCGACTATACTTT
103430628 GGCACTCAGTGTGC
1 GGCACTCAGTGTGC
103430642 AAGATATTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.35
Consensus pattern (42 bp):
GGCACTCAGTGTGCGACATTATAATAGCTTCGACTATACTTT
Found at i:103432155 original size:30 final size:29
Alignment explanation
Indices: 103432096--103432155 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
103432086 AACTATTATT
**
103432096 ATGGCCAGAAGCCAAATCATACGATATGC
1 ATGGCCAGAAGCCAAATCATAAAATATGC
* *
103432125 ATGGCCCGAAGCCAAATTGATAAAATATGC
1 ATGGCCAGAAGCCAAA-TCATAAAATATGC
103432155 A
1 A
103432156 CCCGAAGTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (29 bp):
ATGGCCAGAAGCCAAATCATAAAATATGC
Done.