Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 338 of 770
Found at i:103443812 original size:27 final size:27
Alignment explanation
Indices: 103443758--103443869 Score: 147
Period size: 27 Copynumber: 4.1 Consensus size: 27
103443748 AGCATGGCTG
* *
103443758 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
103443784 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
103443811 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
103443838 CCAGATCAGATAATTTATGGCATAGCCA
1 CCAGAACAGATAA-TTGTGGCAGAGCCA
103443866 CCAG
1 CCAG
103443870 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
26 15 0.19
27 45 0.58
28 16 0.21
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:103443840 original size:54 final size:54
Alignment explanation
Indices: 103443758--103443869 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
103443748 AGCATGGCTG
* *
103443758 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAA-TTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTTATGGCAGAGCCA
* * *
103443811 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAACAGATAATTTATGGCAGAGCCA
103443866 CCAG
1 CCAG
103443870 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
53 12 0.23
54 24 0.46
55 16 0.31
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTTATGGCAGAGCCA
Found at i:103445631 original size:46 final size:46
Alignment explanation
Indices: 103445564--103445692 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
103445554 TGTAACCCGC
* * * *
103445564 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
103445610 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
103445656 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103445693 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:103445711 original size:46 final size:45
Alignment explanation
Indices: 103445572--103445711 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
103445562 GCCCATAAGC
* ** * *
103445572 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
103445618 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
103445664 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
103445710 GA
1 GA
103445712 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:103453183 original size:93 final size:93
Alignment explanation
Indices: 103453024--103453195 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
103453014 CACCCATAAG
* * *
103453024 CGAACTCGGACTCAAGTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
103453089 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
103453117 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
103453182 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
103453196 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:103453192 original size:46 final size:46
Alignment explanation
Indices: 103453017--103453192 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
103453007 TGTAACCCAC
* * * *
103453017 CCATAAGCGAACTCGGACTCAAGTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
103453063 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
103453113 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
103453156 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
103453193 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:103454958 original size:40 final size:40
Alignment explanation
Indices: 103454900--103455067 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
103454890 CAATTGAATG
* *
103454900 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
103454941 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
103454980 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
103455020 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
103455060 ATATCCGG
1 ATATCCGG
103455068 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:103455038 original size:80 final size:79
Alignment explanation
Indices: 103454900--103455067 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
103454890 CAATTGAATG
* * *
103454900 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
103454965 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
103454980 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
103455044 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
103455060 ATATCCGG
1 ATATCCGG
103455068 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:103470710 original size:17 final size:17
Alignment explanation
Indices: 103470685--103470718 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
103470675 TTTGGCTAAG
103470685 TATGGAGTTAGGTAACA
1 TATGGAGTTAGGTAACA
*
103470702 TATGTAGTTAGGTAACA
1 TATGGAGTTAGGTAACA
103470719 AAGATAAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (17 bp):
TATGGAGTTAGGTAACA
Found at i:103473211 original size:13 final size:13
Alignment explanation
Indices: 103473183--103473278 Score: 51
Period size: 13 Copynumber: 7.2 Consensus size: 13
103473173 AGCCACCCCT
103473183 TTTATTTTATTTTA
1 TTTATTTTA-TTTA
103473197 TTT-TATTTATTTA
1 TTTAT-TTTATTTA
*
103473210 -TTAGTGTTATTTA
1 TTTA-TTTTATTTA
*
103473223 -TTAGTATTATTTA
1 TTTA-TTTTATTTA
103473236 TTTATATTTATTT-
1 TTTAT-TTTATTTA
103473249 TTGT-TTTACTAATTT-
1 TT-TATTT--T-ATTTA
103473264 TTTATTTTATTTA
1 TTTATTTTATTTA
103473277 TT
1 TT
103473279 ATTCTTATCC
Statistics
Matches: 68, Mismatches: 3, Indels: 23
0.72 0.03 0.24
Matches are distributed among these distances:
12 8 0.12
13 31 0.46
14 20 0.29
15 9 0.13
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:103473236 original size:17 final size:16
Alignment explanation
Indices: 103473198--103473240 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
103473188 TTTATTTTAT
103473198 TTTATTTATTTATTAG
1 TTTATTTATTTATTAG
103473214 TGTTATTTATTAGTATTA-
1 T-TTATTTATT--TATTAG
103473232 TTTATTTAT
1 TTTATTTAT
103473241 ATTTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.04
17 17 0.71
18 1 0.04
19 5 0.21
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (16 bp):
TTTATTTATTTATTAG
Found at i:103473247 original size:17 final size:16
Alignment explanation
Indices: 103473183--103473281 Score: 73
Period size: 16 Copynumber: 6.1 Consensus size: 16
103473173 AGCCACCCCT
103473183 TTTATTTTA-TT-TTA
1 TTTATTTTATTTATTA
103473197 TTT-TATTTATTTATTA
1 TTTAT-TTTATTTATTA
103473213 GTGTTA-TTTATTAGTATTA
1 -T-TTATTTTATT--TATTA
103473232 TTTATTTATATTTATT-
1 TTTATTT-TATTTATTA
* * * *
103473248 TTTGTTTTACTAATTT
1 TTTATTTTATTTATTA
103473264 TTTATTTTATTTATTA
1 TTTATTTTATTTATTA
103473280 TT
1 TT
103473282 CTTATCCATA
Statistics
Matches: 67, Mismatches: 7, Indels: 20
0.71 0.07 0.21
Matches are distributed among these distances:
13 1 0.01
14 7 0.10
15 8 0.12
16 23 0.34
17 14 0.21
18 5 0.07
19 9 0.13
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.72
Consensus pattern (16 bp):
TTTATTTTATTTATTA
Found at i:103473425 original size:12 final size:12
Alignment explanation
Indices: 103473390--103473435 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
103473380 GTATCATTGA
*
103473390 ATTTATTATTATT
1 ATTTTTTATT-TT
*
103473403 A-TTTTTGTTTT
1 ATTTTTTATTTT
103473414 ATTTTTTATTTT
1 ATTTTTTATTTT
103473426 ATTTTTTATT
1 ATTTTTTATT
103473436 ATTTTCTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
11 3 0.10
12 25 0.86
13 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (12 bp):
ATTTTTTATTTT
Found at i:103473430 original size:10 final size:10
Alignment explanation
Indices: 103473398--103473440 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 10
103473388 GAATTTATTA
103473398 TTATTATTTT
1 TTATTATTTT
*
103473408 TGTTTTATTTT
1 T-TATTATTTT
103473419 TTATTTTATTTT
1 TTA--TTATTTT
103473431 TTATTATTTT
1 TTATTATTTT
103473441 CTTAAACTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 9 0.32
11 9 0.32
12 10 0.36
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (10 bp):
TTATTATTTT
Found at i:103475093 original size:24 final size:24
Alignment explanation
Indices: 103475061--103475108 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
103475051 AACGCTTAAG
*
103475061 TGTGGGAATATTTGATAAGTTGTA
1 TGTGGGAATATTTGATAACTTGTA
103475085 TGTGGGAATATTTGATAACTTGTA
1 TGTGGGAATATTTGATAACTTGTA
103475109 AAATTAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (24 bp):
TGTGGGAATATTTGATAACTTGTA
Found at i:103479564 original size:2 final size:2
Alignment explanation
Indices: 103479557--103479585 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
103479547 TCTATTGAAC
103479557 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103479586 TGTGGATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103480779 original size:28 final size:28
Alignment explanation
Indices: 103480741--103480797 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
103480731 ATAGAGCAAG
* *
103480741 AAAACCTAGATTTGGACTTAGATCAGGA
1 AAAACCCAGATTTGGACTTAAATCAGGA
*
103480769 AAAACCCAGATTTGGACTTAAATCGGGA
1 AAAACCCAGATTTGGACTTAAATCAGGA
103480797 A
1 A
103480798 GTACGAGGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (28 bp):
AAAACCCAGATTTGGACTTAAATCAGGA
Found at i:103480935 original size:38 final size:38
Alignment explanation
Indices: 103480884--103480956 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
103480874 GTTATTCATA
103480884 TTATTGTTAAAATTACTTGAAATCTATCTTGCTTTATG
1 TTATTGTTAAAATTACTTGAAATCTATCTTGCTTTATG
103480922 TTATTGTTAAAATTACTTGAAATCTATCTTGCTTT
1 TTATTGTTAAAATTACTTGAAATCTATCTTGCTTT
103480957 GGTTATATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.51
Consensus pattern (38 bp):
TTATTGTTAAAATTACTTGAAATCTATCTTGCTTTATG
Found at i:103481412 original size:46 final size:46
Alignment explanation
Indices: 103481252--103481422 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 46
103481242 TATGTGTGCT
**
103481252 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT---TTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGAGAAGAGAGCC
* * ** * * * *
103481298 AATGTAAGACATGTCTGGGACATGTATCAACCTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-AGA-GAGCC
* * * * *
103481346 AGTGTAAAACATATCAGGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAGAGAGCC
103481392 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
103481423 CTTCAGATAT
Statistics
Matches: 94, Mismatches: 26, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
43 2 0.02
46 57 0.61
47 2 0.02
48 33 0.35
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAGAGAGCC
Found at i:103481539 original size:49 final size:49
Alignment explanation
Indices: 103481482--103481654 Score: 156
Period size: 49 Copynumber: 3.6 Consensus size: 49
103481472 CTTATTGTGT
103481482 GTCAGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAGAT-AAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAGATGAA-A
* * * * *
103481531 GTCAGTGTAAGATCTGTCTGGGACACGGCATCGGCCTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAA
* * * * * * **
103481580 GTCAATGTAAGACCTATCTGGGACATGGCGTCGACTTTGAT-G-TGCTA
1 GTCAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAA
* *
103481627 GCCAGTGTAAGACCATGTTTGGGACATG
1 GTCAGTGTAAGACC-TGTCTGGGACATG
103481655 GCTCAGCATC
Statistics
Matches: 101, Mismatches: 20, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
47 15 0.15
48 12 0.12
49 72 0.71
50 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAGATGAAA
Found at i:103487243 original size:40 final size:39
Alignment explanation
Indices: 103487185--103487352 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 39
103487175 CAATTGAATG
* *
103487185 ATATCCGGGTTAAGACCCGAAGGCAATTTTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTTTGCAAGTG-CTT
* *
103487226 -TATCCGGGCTAATACCCGAAGGCATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATT-TTGCAAG-TGCTT
* *
103487265 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTT-TGCAAGTGC-TT
* ** *
103487305 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTT-TGCAAGTGCTT
103487345 ATATCCGG
1 ATATCCGG
103487353 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 10, Indels: 15
0.81 0.07 0.11
Matches are distributed among these distances:
39 6 0.05
40 102 0.93
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTTGCAAGTGCTT
Found at i:103487326 original size:80 final size:79
Alignment explanation
Indices: 103487185--103487352 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
103487175 CAATTGAATG
* * *
103487185 ATATCCGGGTTAAGACCCGAAGGCAATTTTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTTTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
103487250 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
103487265 ATATCCGGGCTAATACCCGAAGGC-ATTTGTGCGAGTCG-TTATATCCGGGCTAAGACTCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCAATTT-TGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGG
* **
103487328 CATTTGTGCGTGTGGTT
63 CATTCGTGCAAGTGGTT
103487345 ATATCCGG
1 ATATCCGG
103487353 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
79 6 0.08
80 69 0.91
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:103492058 original size:30 final size:30
Alignment explanation
Indices: 103492022--103492122 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
103492012 GACAAGATTG
* * *
103492022 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
103492052 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
103492080 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
103492109 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
103492123 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:103492134 original size:29 final size:28
Alignment explanation
Indices: 103492051--103492126 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
103492041 AAAATTGTAC
* *
103492051 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
103492079 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
103492108 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
103492127 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:103496994 original size:80 final size:80
Alignment explanation
Indices: 103496910--103497058 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
103496900 TATGGTAACC
* * * *
103496910 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
103496974 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
103496990 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
103497055 CCGG
66 CCGG
103497059 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:103497000 original size:40 final size:38
Alignment explanation
Indices: 103496951--103497058 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
103496941 ATCACGATTT
*
103496951 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
103496991 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
103497031 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
103497059 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:103513881 original size:39 final size:38
Alignment explanation
Indices: 103513610--103513867 Score: 326
Period size: 38 Copynumber: 6.7 Consensus size: 38
103513600 TCGAATGATG
* *
103513610 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
103513650 TCC--ACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
103513687 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
103513726 TCCGGGCTAAGCCCGAAGGCATTTGTGC-AGTTACTAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
103513763 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
103513803 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
103513843 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
103513868 AACGAGTAGC
Statistics
Matches: 195, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
37 10 0.05
38 79 0.41
39 63 0.32
40 43 0.22
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (38 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:103515508 original size:19 final size:19
Alignment explanation
Indices: 103515472--103515510 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
103515462 TTTCCATCAT
* *
103515472 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
103515491 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
103515510 A
1 A
103515511 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:103516061 original size:28 final size:26
Alignment explanation
Indices: 103515974--103516063 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 26
103515964 GTGACAGAGT
*
103515974 CACCAGATACAGATATTTTGTAGCAGTGC
1 CACCAGA-ACAGATATTTT-TGGCA-TGC
*** *
103516003 CACCAGAACAGATATACGTGGCAGGGC
1 CACCAGAACAGATATTTTTGGCA-TGC
103516030 CACCAGAACAGATAATTTTTGGCATAGC
1 CACCAGAACAGAT-ATTTTTGGCAT-GC
103516058 CACCAG
1 CACCAG
103516064 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 20 0.40
28 23 0.46
29 7 0.14
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (26 bp):
CACCAGAACAGATATTTTTGGCATGC
Found at i:103516217 original size:28 final size:28
Alignment explanation
Indices: 103516169--103516236 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
103516159 AAATTAACCC
* **
103516169 TAGGGGTATAAAGGTCGTTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
103516197 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
103516225 TAGGGGTATAAT
1 TAGGGGTATAAT
103516237 AGTACATCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.07, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:103521121 original size:23 final size:23
Alignment explanation
Indices: 103521095--103521138 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
103521085 CGCAAAAATA
* *
103521095 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
103521118 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
103521139 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:103523526 original size:48 final size:48
Alignment explanation
Indices: 103523462--103523609 Score: 206
Period size: 48 Copynumber: 3.1 Consensus size: 48
103523452 TTGATGTACA
** *
103523462 AGATATATATATGTGGTAAAGTTGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
**
103523510 AGATATATATATGTGGTAAAGCCGAATGGCTTGTGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
103523558 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
103523606 AGAT
1 AGAT
103523610 GTGTATATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:103531192 original size:40 final size:40
Alignment explanation
Indices: 103531102--103531362 Score: 298
Period size: 40 Copynumber: 6.5 Consensus size: 40
103531092 CTCAAGTAAT
* * * *
103531102 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
103531140 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
103531180 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
103531220 CTTCGGGTCTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
103531260 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
103531300 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
103531341 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
103531363 CATTCGAATA
Statistics
Matches: 188, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
38 11 0.06
39 18 0.10
40 129 0.69
41 27 0.14
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:103531233 original size:80 final size:79
Alignment explanation
Indices: 103531102--103531362 Score: 328
Period size: 80 Copynumber: 3.3 Consensus size: 79
103531092 CTCAAGTAAT
* * * * * *
103531102 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
*
103531166 ACTAGCACAGATGC
66 ACTAGCACAAATGC
* *
103531180 CTTCGGGACTTAGCCTGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAG
*
103531244 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * *
103531260 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGT
*
103531325 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
103531341 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
103531363 CATTCGAATA
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 97 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:103531327 original size:120 final size:121
Alignment explanation
Indices: 103531102--103531362 Score: 340
Period size: 120 Copynumber: 2.2 Consensus size: 121
103531092 CTCAAGTAAT
* * * * *
103531102 CTTCGGGATTTAG-CCGGATATAA-CTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGG
1 CTTCGGGACTTAGCCCGGATATAATC-GCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
103531164 TCACTAGCACAGATGCCTTCGGGACTTAGCCTGGATATAGTCA-CTAGCACAAATGC
65 TCACTAGCACAGATGCCTTCGGGACTTAGCCTGGATATAGTCACCTAGCACAAAAGC
*
103531220 CTTCGGGTCTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-
1 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
* *
103531284 CAACTCGCAC-GAATGCCTTC-GGATCTTAGTCC-GGTTATAGTCACCTAGCACAAAAGC
66 C-ACTAGCACAG-ATGCCTTCGGGA-CTTAG-CCTGGATATAGTCACCTAGCACAAAAGC
103531341 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
103531363 CATTCGAATA
Statistics
Matches: 125, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
118 11 0.09
119 21 0.17
120 58 0.46
121 35 0.28
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (121 bp):
CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAGATGCCTTCGGGACTTAGCCTGGATATAGTCACCTAGCACAAAAGC
Found at i:103537308 original size:40 final size:40
Alignment explanation
Indices: 103537259--103537426 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
103537249 TCTTCGGAAT
* * *
103537259 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
103537298 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103537338 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103537378 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
103537418 TTAGCCCGG
1 TTAGCCCGG
103537427 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:103544601 original size:40 final size:40
Alignment explanation
Indices: 103544547--103544771 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
103544537 CTTGCACAAG
* *
103544547 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
103544587 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
103544627 GCCTTCTGGCCTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
103544667 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
103544707 GCCTTCAGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
103544748 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
103544772 CATTCAAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 28 0.18
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:103544645 original size:80 final size:80
Alignment explanation
Indices: 103544511--103544771 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
103544501 CTCAAGTAAT
* * * * * * *
103544511 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGTCTTAGCCCGGATATAGT
*
103544574 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* * * * *
103544589 CTTCGGGGCTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCTGGCCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCAGGTCTTAGCCCGGATATAG
*
103544653 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
103544669 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCAGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGTCTTAGCCCGGATATAGT
*
103544734 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
103544750 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
103544772 CATTCAAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 11 0.07
79 16 0.10
80 93 0.61
81 33 0.22
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:103553629 original size:93 final size:93
Alignment explanation
Indices: 103553521--103553692 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
103553511 CGCCCATAAG
* *
103553521 CGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
103553586 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
103553614 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
103553679 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
103553693 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:103553689 original size:46 final size:46
Alignment explanation
Indices: 103553514--103553689 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
103553504 TGTAACCCGC
* * *
103553514 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
103553560 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
103553610 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
103553653 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
103553690 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:103556111 original size:14 final size:14
Alignment explanation
Indices: 103556094--103556123 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
103556084 TCAAAACAAG
*
103556094 AATTAAGAACACAT
1 AATTAAGAACAAAT
103556108 AATTAAGAACAAAT
1 AATTAAGAACAAAT
103556122 AA
1 AA
103556124 AATATTTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.10, G:0.07, T:0.20
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:103563080 original size:48 final size:48
Alignment explanation
Indices: 103563009--103563190 Score: 276
Period size: 48 Copynumber: 3.8 Consensus size: 48
103562999 ACCATGCTAA
** *
103563009 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGAAAATTATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
103563057 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-AGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGA-CGATGATAT
* *
103563105 ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* **
103563153 GTGTGCCAATGTAAGACCATGTCTGGGACATGGCATCG
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCG
103563191 GTGATGACAT
Statistics
Matches: 123, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.01
48 122 0.99
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
Found at i:103563173 original size:96 final size:94
Alignment explanation
Indices: 103563009--103563236 Score: 287
Period size: 96 Copynumber: 2.4 Consensus size: 94
103562999 ACCATGCTAA
* * **
103563009 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGAAAATTATATATGTGCCTGTGTAAGAC
1 ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGAAAATGATATATGTGCCAATGTAAGAC
*
103563074 CATGTCTGGGACATGGCATCAGCGATGAT-AT
66 CATGTCTGGGACATGGCATC-G-G-TGATGAC
*** *
103563105 ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCAATGTAAGAC
1 ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGAAAATGATATATGTGCCAATGTAAGAC
103563170 CATGTCTGGGACATGGCATCGGTGATGAC
66 CATGTCTGGGACATGGCATCGGTGATGAC
* * * *
103563199 ATGTGGATTCATGTAAGACCATGTCGGGGATATGGCAT
1 ATGTGCA-T-GTGTAAGACCATGTCTGGGACATGGCAT
103563237 TGGTACTTTA
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
93 4 0.03
94 8 0.07
95 2 0.02
96 102 0.88
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGAAAATGATATATGTGCCAATGTAAGAC
CATGTCTGGGACATGGCATCGGTGATGAC
Found at i:103563191 original size:48 final size:48
Alignment explanation
Indices: 103563009--103563236 Score: 255
Period size: 48 Copynumber: 4.8 Consensus size: 48
103562999 ACCATGCTAA
** *** *
103563009 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGAAAATTATAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
** *
103563057 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
103563105 ATGTG-CATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCA-ATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
103563153 GTGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGTGATGACAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
103563201 GTG-GATTC-ATGTAAGACCATGTCGGGGATATGGCAT
1 ATGTG--CCAATGTAAGACCATGTCTGGGACATGGCAT
103563237 TGGTACTTTA
Statistics
Matches: 162, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 2 0.01
48 157 0.97
49 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:103567262 original size:47 final size:47
Alignment explanation
Indices: 103567190--103567416 Score: 303
Period size: 47 Copynumber: 4.7 Consensus size: 47
103567180 CCCTTCGGGA
* * * * * * *
103567190 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
* *
103567238 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103567284 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103567333 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103567380 CTTATCACATATATACACACCTTCACATTCATCACAT
1 CTTATCACATATAT--ACACTTTCACATTCATCACAT
103567417 AAAATCCTAA
Statistics
Matches: 164, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 97 0.59
48 1 0.01
49 64 0.39
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103567352 original size:96 final size:96
Alignment explanation
Indices: 103567190--103567416 Score: 336
Period size: 96 Copynumber: 2.4 Consensus size: 96
103567180 CCCTTCGGGA
* * * *
103567190 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGTCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATCGGCCACTAGGTCCTATCACATATATA
* *
103567252 CACTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
103567284 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGG-CCTTATCACATATATA
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCACTAGGTCC-TATCACATATATA
103567348 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
103567380 CTTATCACATATATACACACCTTCACATTCATCACAT
1 CTTATCACATATATATACACCTTCACATTCATCACAT
103567417 AAAATCCTAA
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
94 10 0.08
95 3 0.02
96 105 0.87
97 3 0.02
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATCGGCCACTAGGTCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103569591 original size:49 final size:49
Alignment explanation
Indices: 103569521--103569680 Score: 270
Period size: 49 Copynumber: 3.3 Consensus size: 49
103569511 CCCTTCGGGA
* * *
103569521 CTTATCACAT-T-TATACACTTTCACATCCATCACTTTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103569568 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
103569617 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
103569666 CTTATCACATATATA
1 CTTATCACATATATA
103569681 CATCTCATAC
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
47 10 0.09
48 1 0.01
49 96 0.90
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:103575594 original size:40 final size:40
Alignment explanation
Indices: 103575489--103575718 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
103575479 CACCAGCGAT
* *
103575489 TGCTCTTCGGGAC-TAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
103575528 TGCTCTTCGG-ACTTAGTCCGGTTGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
103575567 TGCTCTTCGGAACTTAGTCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
103575607 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
103575647 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
103575687 TGCTCTTCGGAACTTAGTCTGGATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
103575719 CTCAATTCTC
Statistics
Matches: 183, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
38 2 0.01
39 43 0.23
40 138 0.75
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:103577909 original size:46 final size:47
Alignment explanation
Indices: 103577838--103578105 Score: 389
Period size: 47 Copynumber: 5.7 Consensus size: 47
103577828 CCCTTCGGGA
* * * * * *
103577838 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
103577885 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
103577931 CTTATCACATATATATACCTTCACATTCATCACA-TCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
103577977 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
103578024 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
103578071 CTTATCACAT-TATACACACTTCACATTCATCACAT
1 CTTATCACATATATACAC-TTTCACATTCATCACAT
103578106 AAAATCCTAA
Statistics
Matches: 204, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 90 0.44
47 114 0.56
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:103577997 original size:93 final size:93
Alignment explanation
Indices: 103577838--103578105 Score: 373
Period size: 93 Copynumber: 2.9 Consensus size: 93
103577828 CCCTTCGGGA
* * * * *
103577838 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGCC-TATCACATATATAC
1 CTTATCACATATATATAC-CTT-CACATTCATCAC-ATCGCCATTAGGCCTTATCACATATATAC
* *
103577900 ACTTTCACATTCATCACATTGGCCATTCGGC
63 ACTTTCACATTCATCACATCGGCCATTAGGC
103577931 CTTATCACATATATATACCTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACACT
1 CTTATCACATATATATACCTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACACT
103577996 TTCACATTCATCACATCGGCCATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
* *
103578024 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-TATACAC
1 CTTATCACATATATATACCTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATACAC
*
103578088 ACTTCACATTCATCACAT
65 -TTTCACATTCATCACAT
103578106 AAAATCCTAA
Statistics
Matches: 160, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
92 10 0.06
93 105 0.66
94 40 0.25
95 5 0.03
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATATACCTTCACATTCATCACATCGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:103581408 original size:25 final size:23
Alignment explanation
Indices: 103581358--103581408 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
103581348 GATTTTGAGT
*
103581358 AATTAGGGCTAAATTGTAAAAAA
1 AATTAGGGCTAAAATGTAAAAAA
* *
103581381 AATTGAGGGACTAAAATGTGAAATA
1 AATT-AGGG-CTAAAATGTAAAAAA
103581406 AAT
1 AAT
103581409 AAAATGTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 4 0.17
24 4 0.17
25 15 0.65
ACGTcount: A:0.51, C:0.04, G:0.20, T:0.25
Consensus pattern (23 bp):
AATTAGGGCTAAAATGTAAAAAA
Found at i:103582555 original size:28 final size:28
Alignment explanation
Indices: 103582477--103582543 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
103582467 AACAGTAAAT
*
103582477 GTGGCAAAGCCACCAGAGCAGTAATTAC
1 GTGGCAAAGCCACCAGAGTAGTAATTAC
103582505 GTGGCAAAGCCACCAGAGTAGTAATTAC
1 GTGGCAAAGCCACCAGAGTAGTAATTAC
103582533 GTGGCAAAGCC
1 GTGGCAAAGCC
103582544 TCTAATAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.24, G:0.27, T:0.15
Consensus pattern (28 bp):
GTGGCAAAGCCACCAGAGTAGTAATTAC
Found at i:103585018 original size:41 final size:42
Alignment explanation
Indices: 103584903--103585061 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
103584893 AGGATTTTCA
* * * * *
103584903 ATATGTGTTCTCATGTGAGACCACATCTAGGAC-GTTGGCATCA
1 ATATGTGAT-TCATGTAAGACCATATCTGGGACAG-TGGCATCG
* * * *
103584946 AAATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCG
1 ATATGTGATT-CATGTAAGACCATATCTGGGACAGTGGCATCG
* * *
103584989 -TATTTGATTCATGTAAGACCCTATCTGGGATAGTGGCATCG
1 ATATGTGATTCATGTAAGACCATATCTGGGACAGTGGCATCG
* **
103585030 ATATGTGATGGCATGTAAGACCACGTCTGGGA
1 ATATGTGAT-TCATGTAAGACCATATCTGGGA
103585062 GGTTGGCATT
Statistics
Matches: 91, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
41 27 0.30
42 15 0.16
43 49 0.54
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
ATATGTGATTCATGTAAGACCATATCTGGGACAGTGGCATCG
Found at i:103585247 original size:16 final size:17
Alignment explanation
Indices: 103585226--103585262 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
103585216 GTTATTTGAT
103585226 ATATGATGCAAATG-AA
1 ATATGATGCAAATGTAA
*
103585242 ATATGATGCTAATGTAA
1 ATATGATGCAAATGTAA
103585259 ATAT
1 ATAT
103585263 ATGTGTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (17 bp):
ATATGATGCAAATGTAA
Found at i:103587728 original size:27 final size:26
Alignment explanation
Indices: 103587688--103587775 Score: 90
Period size: 27 Copynumber: 3.2 Consensus size: 26
103587678 GTGATAGAGT
*
103587688 CACCAAATACAGATAATCGTGGCAGTGC
1 CACCAGATA-AGATAAT-GTGGCAGTGC
*
103587716 CACCAGA-ATAGATATATGTGGCAGAGC
1 CACCAGATA-AGATA-ATGTGGCAGTGC
103587743 CACCAGATAAGATAATTGTGGCA-TAGC
1 CACCAGATAAGATAA-TGTGGCAGT-GC
103587770 CACCAG
1 CACCAG
103587776 GACGCTTCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
26 1 0.02
27 42 0.81
28 9 0.17
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CACCAGATAAGATAATGTGGCAGTGC
Found at i:103587729 original size:54 final size:54
Alignment explanation
Indices: 103587671--103587775 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 54
103587661 CTGCCAGAGC
* *
103587671 AGATA-ATGTGATAGAGTCACCAAATACAGATAATCGTGGCAGT-GCCACCAGAAT
1 AGATATATGTGACAGAGCCACCAAATA-AGATAATCGTGGCA-TAGCCACCAGAAT
* * *
103587725 AGATATATGTGGCAGAGCCACCAGATAAGATAATTGTGGCATAGCCACCAG
1 AGATATATGTGACAGAGCCACCAAATAAGATAATCGTGGCATAGCCACCAG
103587776 GACGCTTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
53 1 0.02
54 26 0.59
55 17 0.39
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AGATATATGTGACAGAGCCACCAAATAAGATAATCGTGGCATAGCCACCAGAAT
Found at i:103588945 original size:16 final size:16
Alignment explanation
Indices: 103588920--103588953 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
103588910 CTAAAAGAAA
103588920 AAGAACAGATGAGCAG
1 AAGAACAGATGAGCAG
*
103588936 AAGAAGAGATGAGCAG
1 AAGAACAGATGAGCAG
103588952 AA
1 AA
103588954 AATTCAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.09, G:0.32, T:0.06
Consensus pattern (16 bp):
AAGAACAGATGAGCAG
Found at i:103595586 original size:27 final size:27
Alignment explanation
Indices: 103595555--103595657 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
103595545 GCTGCCAGAG
* *
103595555 CAGATAATGTGACAGAGTCACCAGATA
1 CAGATAATGTGGCAGAGCCACCAGATA
* * *
103595582 CAGATAATCGTGGCAGTGCCATCA-AAA
1 CAGATAAT-GTGGCAGAGCCACCAGATA
*
103595609 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATA-ATGTGGCAGAGCCACCAGATA
*
103595636 CAGATAATTGTGGCATAGCCAC
1 CAGATAA-TGTGGCAGAGCCAC
103595658 ACAGGACGCT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.02
27 46 0.75
28 14 0.23
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATAATGTGGCAGAGCCACCAGATA
Found at i:103599180 original size:41 final size:41
Alignment explanation
Indices: 103599135--103599252 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103599125 TGAAAGATAA
103599135 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103599176 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103599206 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103599247 ATGTAG
1 ATGTAG
103599253 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103599191 original size:71 final size:71
Alignment explanation
Indices: 103599103--103599266 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103599093 GAGATGTATC
103599103 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103599168 AGGACA
66 AGGACA
103599174 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103599239 AGGACA
66 AGGACA
103599245 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103599267 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103606736 original size:41 final size:41
Alignment explanation
Indices: 103606691--103606808 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103606681 TGAAAGATAA
103606691 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103606732 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103606762 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103606803 ATGTAG
1 ATGTAG
103606809 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103606747 original size:71 final size:71
Alignment explanation
Indices: 103606659--103606822 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103606649 GAGATGTATC
103606659 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103606724 AGGACA
66 AGGACA
103606730 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103606795 AGGACA
66 AGGACA
103606801 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103606823 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103610272 original size:48 final size:46
Alignment explanation
Indices: 103610159--103610418 Score: 179
Period size: 48 Copynumber: 5.5 Consensus size: 46
103610149 TATGTGTGCT
*
103610159 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGAGCC
* * * *
103610205 AGTGTAAGACGTGTTTGGGACATGCATCGGCCTCTTGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC--AATA-TGAGAGCC
* * * * *
103610253 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGAT-GGACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-T-CAATATGA-GAGCC
* * * ** * * *
103610301 AGTGTAAGACCTGTTTGGGACATGGCATCAG-CT-TGT-TGCGTGTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCAATATGAGAGCC
* * *
103610345 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCA-ATATGAGAGCC
* *
103610394 AGTGTAAGACCATGTTTGAGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
103610419 GCGTCGGCAT
Statistics
Matches: 168, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
44 29 0.17
45 2 0.01
46 34 0.20
47 1 0.01
48 65 0.39
49 25 0.15
50 12 0.07
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGAGCC
Found at i:103611633 original size:20 final size:21
Alignment explanation
Indices: 103611594--103611633 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
103611584 GTCTTAGTGA
103611594 CCACAAGGGCGTGTTGCCCTT
1 CCACAAGGGCGTGTTGCCCTT
*
103611615 CCACATGGGCGTG-TGCCCT
1 CCACAAGGGCGTGTTGCCCT
103611634 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.35, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACAAGGGCGTGTTGCCCTT
Found at i:103617887 original size:46 final size:47
Alignment explanation
Indices: 103617823--103617947 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 47
103617813 TGATATGTGT
103617823 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AATA-TGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTAATATTGA-A
* * * * * *
103617869 GCTAGTGTAAGACGTGTCTTGGACATGCATCGGCCTCTTGATATTTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-TAATATTGAA
103617917 GCCAGTGTAAGACATGTCTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
103617948 AGCCTTGCGA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 33 0.49
48 32 0.48
49 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTAATATTGAA
Found at i:103617935 original size:48 final size:46
Alignment explanation
Indices: 103617823--103618085 Score: 169
Period size: 48 Copynumber: 5.6 Consensus size: 46
103617813 TGATATGTGT
*
103617823 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGA
* * * * *
103617869 GCTAGTGTAAGACGTGTCTTGGACATGCATCGGCCTCTTGATATTTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC--AATA-TGAGA
* * * *
103617917 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGAT-GGACAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-T-CAATATGA-GA
* * * * * * *
103617965 GCTAGTGTAAGACCTGTTTGGGACATGGCATCAG-CT---TGTTACGT
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCAATATGA-GA
* * * *
103618009 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCA-ATATGAGA
* *
103618058 GCCAGTGTAAGACCATGTTTGAGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
103618086 GCGTCGGCAT
Statistics
Matches: 170, Mismatches: 31, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
46 36 0.21
47 1 0.01
48 63 0.37
49 23 0.14
50 15 0.09
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGA
Found at i:103618399 original size:267 final size:267
Alignment explanation
Indices: 103617920--103618424 Score: 785
Period size: 267 Copynumber: 1.9 Consensus size: 267
103617910 TATTTAAGCC
* * * *
103617920 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGATGGACAAGCTAGTGTAAGACCTGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCAACCTCGCGATGGACAAGCTAGTGTAAGACCTATCTG
* **
103617985 GGACATGGCATCAGCTTGTTACGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGAT
66 GGACATGGCATCAGCTTGTTACATGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAAT
* * * * * *
103618050 ATATGAGAGCCAGTGTAAGACCATGTTTGAGACATGGCGTCGGCATTTTAGCCCATGTTAAGGCT
131 AAATGAAAACCAATGTAAGACCATGTCTGAGACATGGCGTCGGCATCTTAGCCCATGTTAAGGCT
*
103618115 GTCGAGTATCCGGTAGTATTCCAAATGGTTCAACAAAAGGTTTGAACATGCATCGGCTTTGAGAC
196 ATCGAGTATCCGGTAGTATTCCAAATGGTTCAACAAAAGGTTTGAACATGCATCGGCTTTGAGAC
103618180 TAGAGCT
261 TAGAGCT
* * *
103618187 AGTGTAAGACGTGTGTGGGACATGCATCAACCTCGTGATGGACAAGCTAGTGTAAGACCTATCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAACCTCGCGATGGACAAGCTAGTGTAAGACCTATCTG
* * * **
103618252 GGACATGGCGTTATCTTGTTGTATGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAAT
66 GGACATGGCATCAGCTTGTTACATGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAAT
*
103618317 AAATGAAAACCAATGTAAGACCATGTCTGAGACATGGCGTTGGCATCTTAGCCCATGTTAAGGCT
131 AAATGAAAACCAATGTAAGACCATGTCTGAGACATGGCGTCGGCATCTTAGCCCATGTTAAGGCT
* *
103618382 ATCGAGTATCTGGTAGTATTCCAAATGGTTTAACAAAAGGTTT
196 ATCGAGTATCCGGTAGTATTCCAAATGGTTCAACAAAAGGTTT
103618425 ATGATTATAT
Statistics
Matches: 213, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
267 213 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (267 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACCTCGCGATGGACAAGCTAGTGTAAGACCTATCTG
GGACATGGCATCAGCTTGTTACATGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAAT
AAATGAAAACCAATGTAAGACCATGTCTGAGACATGGCGTCGGCATCTTAGCCCATGTTAAGGCT
ATCGAGTATCCGGTAGTATTCCAAATGGTTCAACAAAAGGTTTGAACATGCATCGGCTTTGAGAC
TAGAGCT
Found at i:103619869 original size:8 final size:8
Alignment explanation
Indices: 103619856--103619894 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
103619846 ATGAATCGGC
103619856 AAAAGCCG
1 AAAAGCCG
103619864 AAAAGCCG
1 AAAAGCCG
*
103619872 AAAAGCTG
1 AAAAGCCG
103619880 AAATA-CCG
1 AAA-AGCCG
103619888 AAAAGCC
1 AAAAGCC
103619895 TAAAGTTGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 1 0.04
8 25 0.93
9 1 0.04
ACGTcount: A:0.51, C:0.23, G:0.21, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:103620168 original size:29 final size:28
Alignment explanation
Indices: 103620109--103620223 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
103620099 GTGAGCATGA
* * *
103620109 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
103620137 ATATAAATGTGATTTGGGCCTAATGGGTC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
103620166 ATA-AACAGGTGATTTGTGCCTAATGGGCC
1 ATATAA-ATGTGA-TTGGGCCTAATGGGCC
* * *
103620195 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
103620223 A
1 A
103620224 AATACAGGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 28 0.39
29 43 0.60
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:103625656 original size:18 final size:18
Alignment explanation
Indices: 103625623--103625732 Score: 69
Period size: 18 Copynumber: 5.8 Consensus size: 18
103625613 TTTTATATGT
*
103625623 TTTTTAGAATTTTTTTAAA
1 TTTTTATAA-TTTTTTAAA
*
103625642 CTTTTATAATTTTTTAAA
1 TTTTTATAATTTTTTAAA
** * *
103625660 AATATATAA-ATTTTAGAA
1 TTTTTATAATTTTTTA-AA
*
103625678 TTTTTATAAATATTTTAAA
1 TTTTTAT-AATTTTTTAAA
* *
103625697 TTTTTAAAATTTATTTTAGAT
1 TTTTTATAA-TT-TTTTA-AA
*
103625718 TTTTTGTAATTTTTT
1 TTTTTATAATTTTTT
103625733 TTTTAAAGAA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
17 5 0.07
18 23 0.32
19 22 0.31
20 13 0.18
21 8 0.11
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTTATAATTTTTTAAA
Found at i:103625673 original size:27 final size:27
Alignment explanation
Indices: 103625638--103625700 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
103625628 AGAATTTTTT
*
103625638 TAAACTTTTATAATTTTTTAAAAATA-TA
1 TAAA-TTTTAGAA-TTTTTAAAAATATTA
* *
103625666 TAAATTTTAGAATTTTTATAAATATTT
1 TAAATTTTAGAATTTTTAAAAATATTA
103625693 TAAATTTT
1 TAAATTTT
103625701 TAAAATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 11 0.35
27 16 0.52
28 4 0.13
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (27 bp):
TAAATTTTAGAATTTTTAAAAATATTA
Found at i:103625692 original size:20 final size:20
Alignment explanation
Indices: 103625669--103625721 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
103625659 AAATATATAA
103625669 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTTA-AAATT
103625689 ATTTTA-AATTTTTAAAATTT
1 ATTTTAGAATTTTTAAAA-TT
103625709 ATTTTAG-ATTTTT
1 ATTTTAGAATTTTT
103625722 TGTAATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.10
19 8 0.27
20 19 0.63
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
ATTTTAGAATTTTTAAAATT
Found at i:103627728 original size:21 final size:21
Alignment explanation
Indices: 103627689--103627728 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
103627679 TTCTTTTTAA
*
103627689 ATTTTAAATTTTAGTTATTTC
1 ATTTTAAATTTTAGATATTTC
103627710 ATTTT-AATTTTGAGATATT
1 ATTTTAAATTTT-AGATATT
103627729 AATTTTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (21 bp):
ATTTTAAATTTTAGATATTTC
Found at i:103627733 original size:20 final size:20
Alignment explanation
Indices: 103627688--103627735 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
103627678 ATTCTTTTTA
*
103627688 AATTTTAAATTTTAGTTATTT
1 AATTTT-AATTTTAGATATTT
*
103627709 CATTTTAATTTTGAGATA-TT
1 AATTTTAATTTT-AGATATTT
103627729 AATTTTA
1 AATTTTA
103627736 GATAATTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.58
Consensus pattern (20 bp):
AATTTTAATTTTAGATATTT
Found at i:103634377 original size:40 final size:40
Alignment explanation
Indices: 103634186--103634370 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
103634176 TCGAATGATG
* * *
103634186 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
103634226 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
103634266 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
103634306 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
103634346 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
103634371 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
39 35 0.27
40 89 0.67
41 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:103634377 original size:79 final size:79
Alignment explanation
Indices: 103634186--103634403 Score: 273
Period size: 79 Copynumber: 2.7 Consensus size: 79
103634176 TCGAATGATG
* * **
103634186 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
103634250 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
* *
103634266 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTG
103634331 TGCGAGTTACTATAA
66 TGCGAGTTACTA-AA
* ** *
103634346 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
103634404 TACGTGATTC
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
78 6 0.05
79 70 0.57
80 39 0.32
81 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:103638467 original size:31 final size:32
Alignment explanation
Indices: 103638402--103638473 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
103638392 TTGGTAAGCG
* *
103638402 GATATTTATTATTTATTATTATTAAGTTAAAA
1 GATATTTATTAATTATAATTATTAAGTTAAAA
*
103638434 GATATTTATTAATTA-AATTATTATA-TTATAA
1 GATATTTATTAATTATAATTATTA-AGTTAAAA
*
103638465 GATTTTTAT
1 GATATTTAT
103638474 ATGATAAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 20 0.57
32 15 0.43
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (32 bp):
GATATTTATTAATTATAATTATTAAGTTAAAA
Found at i:103638754 original size:2 final size:2
Alignment explanation
Indices: 103638747--103638793 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
103638737 TTATAAACTA
103638747 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103638789 AT AT A
1 AT AT A
103638794 AAGTCATAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:103648570 original size:25 final size:25
Alignment explanation
Indices: 103648542--103648593 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
103648532 AGAAAAGGAC
103648542 TAAATTGGAATTTAAAATAATTAAA
1 TAAATTGGAATTTAAAATAATTAAA
*
103648567 TAAATTGGAATTTGAAATAATTAAA
1 TAAATTGGAATTTAAAATAATTAAA
103648592 TA
1 TA
103648594 TGATAATAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.37
Consensus pattern (25 bp):
TAAATTGGAATTTAAAATAATTAAA
Found at i:103650695 original size:42 final size:43
Alignment explanation
Indices: 103650642--103650751 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 43
103650632 GATTTGAGAC
* *
103650642 TTACGTGTAAGACCATATCTGGGACATAGGCATCG-TATCTG-T
1 TTACGTGTAAGACCATATCTGGGACAGAGGCATCGATA-CTGAA
* * *
103650684 TTTCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAA
1 TTACGTGTAAGACCATATCTGGGACAGAGGCATCGATACTGAA
* *
103650727 TTACATGTAAGACCACATCTGGGAC
1 TTACGTGTAAGACCATATCTGGGAC
103650752 GTCGACATTG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 34 0.61
43 22 0.39
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
TTACGTGTAAGACCATATCTGGGACAGAGGCATCGATACTGAA
Found at i:103658052 original size:42 final size:42
Alignment explanation
Indices: 103657949--103658067 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
103657939 ATATGAGATA
* * * *
103657949 TCGTGTAAAATCGTGTCTGGGACATAGGCCTCGATTTGACATTT
1 TCGTGTAAGATCCTGTCTGGGACATAGGCATC-ATAT-ACATTT
*
103657993 TCGTGTAAGA-CCATGTCTAGGACATAGGCATCATAT-CTATTT
1 TCGTGTAAGATCC-TGTCTGGGACATAGGCATCATATAC-ATTT
*
103658035 TCGTGTAAGATCCTGTCTGGGACAGAGGCATCA
1 TCGTGTAAGATCCTGTCTGGGACATAGGCATCA
103658068 ATATTGAATT
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.02
42 32 0.49
43 6 0.09
44 26 0.40
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGATCCTGTCTGGGACATAGGCATCATATACATTT
Found at i:103662444 original size:40 final size:39
Alignment explanation
Indices: 103662379--103662582 Score: 221
Period size: 40 Copynumber: 5.1 Consensus size: 39
103662369 CGGAATACAA
* *
103662379 CCGGATATAACCAC-ACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAA-CACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
103662419 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
103662459 CCAGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
103662499 CCGGATATAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
103662539 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
103662579 CCGG
1 CCGG
103662583 GTATCATTCA
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103669909 original size:40 final size:40
Alignment explanation
Indices: 103669844--103670087 Score: 294
Period size: 40 Copynumber: 6.1 Consensus size: 40
103669834 CGGAATACAA
* ** * * *
103669844 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
103669884 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
103669924 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
103669964 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
103670004 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
* ** * * *
103670044 TCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
103670084 CCGG
1 CCGG
103670088 GTATCATTCA
Statistics
Matches: 180, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
40 179 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:103672630 original size:17 final size:17
Alignment explanation
Indices: 103672608--103672647 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
103672598 ACCGTGGTAA
* *
103672608 ATTGTAAACAGAAATAT
1 ATTGTAAACAAAAAGAT
103672625 ATTGTAAACAAAAAGAT
1 ATTGTAAACAAAAAGAT
103672642 ATTGTA
1 ATTGTA
103672648 TTAAAATGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (17 bp):
ATTGTAAACAAAAAGAT
Found at i:103678590 original size:40 final size:40
Alignment explanation
Indices: 103678546--103678655 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
103678536 TTCACAATTT
* *
103678546 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * * *
103678586 GCACAATTGCCTTTGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
103678626 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
103678656 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:103680765 original size:40 final size:39
Alignment explanation
Indices: 103680600--103680783 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
103680590 AAATTGAATG
* * *
103680600 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
103680640 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
103680680 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
103680720 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
103680759 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
103680784 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:103680808 original size:80 final size:81
Alignment explanation
Indices: 103680640--103680828 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
103680630 GCTGGAAATT
* * * *
103680640 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
103680705 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
103680721 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
103680784 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
103680800 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
103680829 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:103688877 original size:40 final size:39
Alignment explanation
Indices: 103688712--103688895 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
103688702 AAATTGAATG
* * *
103688712 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
103688752 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
103688792 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
103688832 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
103688871 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
103688896 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:103688920 original size:80 final size:81
Alignment explanation
Indices: 103688752--103688940 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
103688742 GCTGGAAATT
* * * *
103688752 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
103688817 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
103688833 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
103688896 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
103688912 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
103688941 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:103692442 original size:29 final size:29
Alignment explanation
Indices: 103692409--103692540 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
103692399 GTGACGAGAT
103692409 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
103692438 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
103692467 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
103692496 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
103692525 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
103692541 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:103700496 original size:29 final size:29
Alignment explanation
Indices: 103700463--103700565 Score: 197
Period size: 29 Copynumber: 3.6 Consensus size: 29
103700453 GTGACGAGAT
103700463 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
103700492 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
103700521 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
103700550 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
103700566 GGCAATACGT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:103700626 original size:29 final size:29
Alignment explanation
Indices: 103700593--103700753 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
103700583 GTGACGAGAT
103700593 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
103700622 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
103700651 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
103700680 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
103700709 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
103700738 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
103700754 AGTTCGGAGG
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:103700654 original size:130 final size:130
Alignment explanation
Indices: 103700421--103700695 Score: 541
Period size: 130 Copynumber: 2.1 Consensus size: 130
103700411 GTTTGCTTTC
103700421 GGCACTATGTGTGCGGGCAATACGTGTGTATGGTGACGAGATTGGCACTAAGTGTGCGTGCTGGA
1 GGCACTATGTGTGCGGGCAATACGTGTGTATGGTGACGAGATTGGCACTAAGTGTGCGTGCTGGA
103700486 AATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAT
66 AATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAT
103700551 GGCACTATGTGTGCGGGCAATACGTGTGTATGGTGACGAGATTGGCACTAAGTGTGCGTGCTGGA
1 GGCACTATGTGTGCGGGCAATACGTGTGTATGGTGACGAGATTGGCACTAAGTGTGCGTGCTGGA
103700616 AATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAT
66 AATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAT
*
103700681 GGCACTAAGTGTGCG
1 GGCACTATGTGTGCG
103700696 TGCTGGAAAT
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 144 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.27
Consensus pattern (130 bp):
GGCACTATGTGTGCGGGCAATACGTGTGTATGGTGACGAGATTGGCACTAAGTGTGCGTGCTGGA
AATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:103708114 original size:29 final size:29
Alignment explanation
Indices: 103708077--103708260 Score: 269
Period size: 29 Copynumber: 6.3 Consensus size: 29
103708067 AAGTCTACAT
*
103708077 ACATGCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
103708106 ATATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
103708135 ATATTCATACGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
103708164 ACATTCATACGGCCCATTAAGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
103708193 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * * *
103708222 ACATTCATATGACCCGTTAAGCCCAAATG
1 ACATTCATATGGCCCATTAGGCCCAAATC
103708251 ACATTCATAT
1 ACATTCATAT
103708261 ACATGCTTTC
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 142 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:103716415 original size:43 final size:43
Alignment explanation
Indices: 103716334--103716419 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
103716324 AAATCGTACA
**
103716334 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
103716377 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAAACACATATCG
103716420 GAATCACAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:103723924 original size:43 final size:42
Alignment explanation
Indices: 103723871--103723963 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 42
103723861 CGAAAATCTC
* * * *
103723871 ATACAATGCCAAC-ATCCCAGACATGGTCTTACATGTAATCAA
1 ATACGATGCC-ACTATCCCAGACAGGGTCTTACACGAAATCAA
*
103723913 ATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAA
1 ATA-CGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAA
103723956 ATACGATG
1 ATACGATG
103723964 TCGATGTCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
42 10 0.23
43 34 0.77
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (42 bp):
ATACGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAA
Found at i:103723978 original size:42 final size:43
Alignment explanation
Indices: 103723885--103723997 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
103723875 AATGCCAACA
* *
103723885 TCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCACTG
* *
103723928 TCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGTCGA-TG
1 TCCCAGACATGGTCTTACACGAAATCAAATATCGATG-CCACTG
* **
103723970 TCCTAGACATTTTCTTACACGTAAATCA
1 TCCCAGACATGGTCTTACACG-AAATCA
103723998 TAAGTCAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 24 0.40
43 36 0.60
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCACTG
Found at i:103724420 original size:18 final size:19
Alignment explanation
Indices: 103724399--103724434 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
103724389 AATAAAGAAA
*
103724399 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
103724417 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
103724435 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:103725833 original size:59 final size:58
Alignment explanation
Indices: 103725736--103725867 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
103725726 AAAATTGTAC
103725736 AGCACTAAGTGTGCGAACTGAAAATATATAGCAATAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCAATAAGTGTGCGAGCTGAAAATATAT
* *
103725794 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCAATAAGTGTGCGAGCTGAAAATATAT
103725853 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
103725868 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCAATAAGTGTGCGAGCTGAAAATATAT
Found at i:103725856 original size:88 final size:89
Alignment explanation
Indices: 103725706--103725867 Score: 254
Period size: 88 Copynumber: 1.8 Consensus size: 89
103725696 GACAAGATTG
* * *
103725706 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCAAT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCAAT
103725771 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * * *
103725795 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCAAT
103725859 AAGTGTGCG
66 AAGTGTGCG
103725868 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
88 51 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCAAT
AAGTGTGCGAGCTGAAAATATATA
Found at i:103725879 original size:29 final size:29
Alignment explanation
Indices: 103725736--103725867 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
103725726 AAAATTGTAC
*
103725736 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
*
103725765 AGCAATAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
103725794 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
103725824 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
103725853 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
103725868 GATTCACTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 70 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:103729772 original size:43 final size:44
Alignment explanation
Indices: 103729683--103729797 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 44
103729673 TGTTATTACA
* * *
103729683 TGTAAGACCATGCTTGGGACATTGGCAT-TGTATTGAGATTATG
1 TGTAAGACCATGTTTGGGACACTGGCATCTGTAATGAGATTATG
*
103729726 TGTAAGACCATGTTTGGGACACTGGCATCAT-TAAT-CGATT-TCG
1 TGTAAGACCATGTTTGGGACACTGGCATC-TGTAATGAGATTAT-G
* * * *
103729769 TGTAAGACCCTATCTGGGACAGTGGCATC
1 TGTAAGACCATGTTTGGGACACTGGCATC
103729798 GATATGTTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.02
43 56 0.92
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (44 bp):
TGTAAGACCATGTTTGGGACACTGGCATCTGTAATGAGATTATG
Found at i:103732406 original size:18 final size:18
Alignment explanation
Indices: 103732383--103732418 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
103732373 ATTCTAAGAC
103732383 TTGTTTAATTGTTCCAAT
1 TTGTTTAATTGTTCCAAT
103732401 TTGTTTAATTGTTCCAAT
1 TTGTTTAATTGTTCCAAT
103732419 GCATCTGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (18 bp):
TTGTTTAATTGTTCCAAT
Found at i:103736912 original size:15 final size:16
Alignment explanation
Indices: 103736892--103736921 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103736882 GCTCATATGA
103736892 AGCTAT-ATGAAATTC
1 AGCTATCATGAAATTC
103736907 AGCTATCATGAAATT
1 AGCTATCATGAAATT
103736922 AGAAAGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (16 bp):
AGCTATCATGAAATTC
Found at i:103737459 original size:43 final size:42
Alignment explanation
Indices: 103737338--103737467 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 42
103737328 ACATTAGGTT
* * *
103737338 ATCAAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCAATATGTGATTACATGTAAGACCATATCTGGGATA-TGGC
** * * * * * *
103737381 ATCGTTAAT-CGATTTCGTGTATGACCCTATTTGGGATAGTGGC
1 ATCAAT-ATGTGATTACATGTAAGACCATATCTGGGATA-TGGC
*
103737424 ATCAATATGTGATAACATGTAAGACCATATCTGGGATATGGC
1 ATCAATATGTGATTACATGTAAGACCATATCTGGGATATGGC
103737466 AT
1 AT
103737468 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 21, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
42 8 0.12
43 54 0.84
44 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
ATCAATATGTGATTACATGTAAGACCATATCTGGGATATGGC
Found at i:103737753 original size:34 final size:34
Alignment explanation
Indices: 103737710--103737778 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
103737700 AATATTCATA
103737710 TGATAGTTTTATTTTTGTATCGCTTGCTAAGATT
1 TGATAGTTTTATTTTTGTATCGCTTGCTAAGATT
103737744 TGATAGTTTTATTTTTGTATCGCTTGCTAAGATT
1 TGATAGTTTTATTTTTGTATCGCTTGCTAAGATT
103737778 T
1 T
103737779 TAAAGCTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.20, C:0.09, G:0.17, T:0.54
Consensus pattern (34 bp):
TGATAGTTTTATTTTTGTATCGCTTGCTAAGATT
Found at i:103740274 original size:28 final size:28
Alignment explanation
Indices: 103740242--103740340 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
103740232 GCAATAAGCC
*
103740242 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
103740270 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
103740298 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
103740327 CGCACACTTAGTGC
1 CGCACACTTAGTGC
103740341 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:103747955 original size:28 final size:28
Alignment explanation
Indices: 103747923--103748021 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
103747913 GCAATAAGCC
*
103747923 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
103747951 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
103747979 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
103748008 CGCACACTTAGTGC
1 CGCACACTTAGTGC
103748022 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:103751846 original size:20 final size:20
Alignment explanation
Indices: 103751821--103751887 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
103751811 ATTTTGATAT
103751821 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
103751841 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
103751861 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
103751881 ACATGAT
1 ACATGAT
103751888 GTATTCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:103751848 original size:11 final size:11
Alignment explanation
Indices: 103751832--103751887 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
103751822 CATGATATGT
103751832 ATGATATGCAC
1 ATGATATGCAC
*
103751843 ATGATATGTAC
1 ATGATATGCAC
103751854 --GATATGCAC
1 ATGATATGCAC
*
103751863 ATGATATG--T
1 ATGATATGCAC
103751872 ATGATATGCAC
1 ATGATATGCAC
103751883 ATGAT
1 ATGAT
103751888 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:103752019 original size:24 final size:24
Alignment explanation
Indices: 103751938--103752019 Score: 96
Period size: 24 Copynumber: 3.4 Consensus size: 24
103751928 AGGAAGTGCA
* *
103751938 AAAAGGGCTATG-CCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
103751961 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTATC
*
103751987 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
103752010 AAAAGAGGCT
1 AAAAG-GGCT
103752020 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
23 9 0.17
24 22 0.42
25 11 0.21
26 10 0.19
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:103752264 original size:31 final size:34
Alignment explanation
Indices: 103752229--103752311 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 34
103752219 GTTTACAGTG
103752229 AAGGCTTCGGCCCA-AT-A-ATATGAAATATGAA
1 AAGGCTTCGGCCCATATGAGATATGAAATATGAA
103752260 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCA----TATGAGATATGAAATATGAA
103752298 AAGGCTTCGGCCCA
1 AAGGCTTCGGCCCA
103752312 GTATATGCTG
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
31 14 0.31
36 2 0.04
37 1 0.02
38 28 0.62
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (34 bp):
AAGGCTTCGGCCCATATGAGATATGAAATATGAA
Found at i:103754712 original size:40 final size:39
Alignment explanation
Indices: 103754544--103754714 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
103754534 AGAAATTGAA
* *
103754544 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
103754584 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
103754624 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
103754664 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
103754704 TGATATCCGGG
1 TGATATCCGGG
103754715 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:103762811 original size:40 final size:39
Alignment explanation
Indices: 103762643--103762813 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
103762633 AGAAATTGAA
* *
103762643 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
103762683 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
103762723 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
103762763 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
103762803 TGATATCCGGG
1 TGATATCCGGG
103762814 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:103764623 original size:37 final size:37
Alignment explanation
Indices: 103764576--103764649 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
103764566 CAAAGGTATG
103764576 CATCACAACCTTTTCTCATATATTTCTAAGCTAGCAT
1 CATCACAACCTTTTCTCATATATTTCTAAGCTAGCAT
*
103764613 CATCGCAACCTTTTCTCATATATTTCTAAGCTAGCAT
1 CATCACAACCTTTTCTCATATATTTCTAAGCTAGCAT
103764650 GTTTTTGATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (37 bp):
CATCACAACCTTTTCTCATATATTTCTAAGCTAGCAT
Found at i:103766598 original size:40 final size:40
Alignment explanation
Indices: 103766542--103766704 Score: 192
Period size: 40 Copynumber: 4.1 Consensus size: 40
103766532 CGGAGTTTAA
** *
103766542 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
103766582 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103766621 CCGGAT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
103766660 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
103766700 CCGGA
1 CCGGA
103766705 CATCATTCGA
Statistics
Matches: 106, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
37 2 0.02
38 22 0.21
39 22 0.21
40 50 0.47
41 10 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:103772541 original size:39 final size:39
Alignment explanation
Indices: 103772487--103772649 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
103772477 TGTGAATGAA
103772487 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
103772526 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
103772565 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
103772604 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
103772644 TGTGCG
1 TGTGCG
103772650 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:103772665 original size:40 final size:39
Alignment explanation
Indices: 103772487--103772679 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
103772477 TGTGAATGAA
* *
103772487 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
103772526 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
103772565 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
103772604 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
103772644 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
103772680 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:103782117 original size:30 final size:30
Alignment explanation
Indices: 103782081--103782181 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 30
103782071 GACAAGATTG
* * *
103782081 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
103782111 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* * *
103782139 GCACTAAGTGTACGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
103782168 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
103782182 GATTCACTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
28 22 0.37
29 18 0.31
30 19 0.32
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:103785228 original size:28 final size:28
Alignment explanation
Indices: 103785182--103785250 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
103785172 TTTAAAACCC
*
103785182 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
103785209 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
103785237 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
103785251 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Done.