Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 339 of 770
Found at i:103786899 original size:20 final size:20
Alignment explanation
Indices: 103786876--103786913 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103786866 CACATCCAAA
*
103786876 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
103786896 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
103786914 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:103793208 original size:28 final size:28
Alignment explanation
Indices: 103793162--103793230 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
103793152 TTTAAAACCC
*
103793162 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
103793189 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
103793217 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
103793231 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:103794880 original size:20 final size:20
Alignment explanation
Indices: 103794857--103794894 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103794847 CACATCCAAA
*
103794857 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
103794877 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
103794895 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:103798034 original size:47 final size:47
Alignment explanation
Indices: 103797925--103798035 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
103797915 CCGGGATAAG
*
103797925 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
103797972 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
103798019 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
103798036 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:103798808 original size:4 final size:4
Alignment explanation
Indices: 103798799--103798827 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
103798789 CCCTTTTCTA
103798799 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
103798828 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:103802281 original size:28 final size:28
Alignment explanation
Indices: 103802249--103802333 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 28
103802239 TACCTGTATC
* * *
103802249 TGGCCCATTAAGCCCATTCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
103802277 TGG-CCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
103802305 TGGCCCATTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
103802333 T
1 T
103802334 TCATGCTCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 11 0.23
28 25 0.52
29 12 0.25
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:103819941 original size:40 final size:40
Alignment explanation
Indices: 103819882--103820068 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
103819872 CATTGGAATG
* * * *
103819882 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
103819922 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
103819962 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
103820002 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
103820042 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
103820069 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:103819984 original size:80 final size:80
Alignment explanation
Indices: 103819882--103820035 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
103819872 CATTGGAATG
* * ** *
103819882 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
103819947 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
103819962 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
103820027 ATCGTGCGA
66 ATCGTGCGA
103820036 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:103820050 original size:80 final size:80
Alignment explanation
Indices: 103819886--103820068 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
103819876 GGAATGATAT
* ** * *
103819886 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
103819951 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
103819966 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
103820031 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
103820046 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
103820069 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:103820088 original size:80 final size:80
Alignment explanation
Indices: 103819886--103820103 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
103819876 GGAATGATAT
* * * * * * * *
103819886 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
103819950 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
103819966 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
103820031 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
103820046 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
103820104 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:103823515 original size:46 final size:46
Alignment explanation
Indices: 103823465--103823639 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
103823455 TGGTTGAGCA
103823465 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
103823511 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
103823556 CATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
103823603 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
103823640 GCGGGTTAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 3 0.03
46 85 0.78
47 6 0.06
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:103823626 original size:92 final size:93
Alignment explanation
Indices: 103823462--103823632 Score: 301
Period size: 92 Copynumber: 1.8 Consensus size: 93
103823452 GGATGGTTGA
*
103823462 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
103823527 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
103823555 GCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
103823618 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
103823633 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 2 0.03
92 67 0.89
93 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:103825387 original size:40 final size:40
Alignment explanation
Indices: 103825200--103825379 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
103825190 TACTCAAATT
* *
103825200 ATCACACACTAAGTGACAAAACATAGCCGAAGCTATTTTAA
1 ATCACACACTAAGTG-CCATACATAGCCGAAGCTATTTTAA
* * * * * *
103825241 CCTCGCACACTAAGTGCCATACATAGCCAAAACTATCTTGA
1 -ATCACACACTAAGTGCCATACATAGCCGAAGCTATTTTAA
*
103825282 ATCACACACTAAGTGCCATACATAGCCGAAGCTATTTTGA
1 ATCACACACTAAGTGCCATACATAGCCGAAGCTATTTTAA
*** * * *
103825322 ATTGTACACTAAGTGCCATATATAGCCGAAGCTATGTCAA
1 ATCACACACTAAGTGCCATACATAGCCGAAGCTATTTTAA
103825362 ATCACACACTAAGTGCCA
1 ATCACACACTAAGTGCCA
103825380 CATATAGCTG
Statistics
Matches: 115, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
40 83 0.72
41 19 0.17
42 13 0.11
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (40 bp):
ATCACACACTAAGTGCCATACATAGCCGAAGCTATTTTAA
Found at i:103825387 original size:80 final size:80
Alignment explanation
Indices: 103825200--103825379 Score: 236
Period size: 80 Copynumber: 2.2 Consensus size: 80
103825190 TACTCAAATT
*
103825200 ATCACACACTAAGTGACAAAACATAGCCGAAGCTATTTTAACCTCGCACACTAAGTGCCATACAT
1 ATCACACACTAAGTG-CCAAACATAGCCGAAGCTATTTTAA-CTCGCACACTAAGTGCCATACAT
**
103825265 AGCCAAAACTATCTTGA
64 AGCCAAAACTATCTCAA
* * * *
103825282 ATCACACACTAAGTGCCATACATAGCCGAAGCTATTTTGAA-TTGTACACTAAGTGCCATATATA
1 ATCACACACTAAGTGCCAAACATAGCCGAAGCTATTTT-AACTCGCACACTAAGTGCCATACATA
* * *
103825346 GCCGAAGCTATGTCAA
65 GCCAAAACTATCTCAA
103825362 ATCACACACTAAGTGCCA
1 ATCACACACTAAGTGCCA
103825380 CATATAGCTG
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 49 0.56
81 21 0.24
82 17 0.20
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (80 bp):
ATCACACACTAAGTGCCAAACATAGCCGAAGCTATTTTAACTCGCACACTAAGTGCCATACATAG
CCAAAACTATCTCAA
Found at i:103825608 original size:38 final size:38
Alignment explanation
Indices: 103825557--103825633 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
103825547 ATCCTAATCC
103825557 AAATTTTGTTTTTCTTGATCTAAATATACTCAAAATTA
1 AAATTTTGTTTTTCTTGATCTAAATATACTCAAAATTA
103825595 AAATTTTGTTTTTCTTGATCTAAATATACTCAAAATTA
1 AAATTTTGTTTTTCTTGATCTAAATATACTCAAAATTA
103825633 A
1 A
103825634 CTCCTTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (38 bp):
AAATTTTGTTTTTCTTGATCTAAATATACTCAAAATTA
Found at i:103830281 original size:40 final size:40
Alignment explanation
Indices: 103830218--103830457 Score: 272
Period size: 40 Copynumber: 6.0 Consensus size: 40
103830208 CGAAATTTAA
** *
103830218 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103830258 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
103830298 CCGG-TATAATAACTCACACAAACGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
103830337 CCGGATATAGTAGCTCGCACGAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103830377 CCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
103830417 CCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
103830457 C
1 C
103830458 TGGTTATCAT
Statistics
Matches: 174, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 39 0.22
40 135 0.78
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:103830338 original size:79 final size:80
Alignment explanation
Indices: 103830237--103830421 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 80
103830227 GCTACTCGTT
* * * *
103830237 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGG
103830302 -TATAATAACTCACA
66 ATATAATAACTCACA
* * *
103830316 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGG
* * *
103830381 ATATAGTAGCTCGCA
66 ATATAATAACTCACA
*
103830396 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103830422 ATTAGCCACT
Statistics
Matches: 93, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 58 0.62
80 35 0.38
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGG
ATATAATAACTCACA
Found at i:103834031 original size:40 final size:40
Alignment explanation
Indices: 103833923--103834032 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
103833913 ATTGAATGAT
* * * * *
103833923 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
103833963 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
103834003 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
103834033 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:103834047 original size:40 final size:39
Alignment explanation
Indices: 103833923--103834072 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
103833913 ATTGAATGAT
* * * * * * *
103833923 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
103833963 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
103834003 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
103834043 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
103834073 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:103841741 original size:39 final size:40
Alignment explanation
Indices: 103841634--103841875 Score: 269
Period size: 40 Copynumber: 6.1 Consensus size: 40
103841624 CGGAATTTAA
** *
103841634 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103841674 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
103841714 CCGG-TATAATAACTCGTACAAACGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
103841753 CCGGATATAGTAGCTCGCACGAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
103841792 CTGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
103841832 CCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
103841872 CCGG
1 CCGG
103841876 TTATCATCCG
Statistics
Matches: 175, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
39 77 0.44
40 98 0.56
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:103841753 original size:79 final size:78
Alignment explanation
Indices: 103841646--103841876 Score: 259
Period size: 79 Copynumber: 2.9 Consensus size: 78
103841636 GGATATAGCT
* * *
103841646 ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTT
103841711 AGCCCGGTATAATA
65 AGCCCGGTATAATA
* * * *
103841725 ACTCGTACAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTC-GGACTT
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTT
* *
103841789 AGCCTGGATATAGTA
65 AGCCCGG-TATAATA
* * * * ** *
103841804 GCTCGCACGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACT
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACT
103841868 TAGCCCGGT
64 TAGCCCGGT
103841877 TATCATCCGA
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
78 15 0.12
79 100 0.79
80 12 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (78 bp):
ACTCGTACAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTA
GCCCGGTATAATA
Found at i:103856256 original size:46 final size:47
Alignment explanation
Indices: 103856175--103856313 Score: 142
Period size: 46 Copynumber: 3.0 Consensus size: 47
103856165 GACAGGACAG
* *
103856175 GACAGAAATGAGCCATGTAAGTCCATATCAG-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGGA
*
103856221 GACAGGAATGAGCCATGT-AG-CCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAG--A-ATATATGGCATTGGA
* ** * * *
103856269 GACAGGAATAATTCATGTAAGTCCATGTC-GAAGACATGGCATTGG
1 GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGG
103856314 CAGGATATTG
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 29 0.38
47 1 0.01
48 29 0.38
49 3 0.04
50 5 0.06
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGGA
Found at i:103865617 original size:24 final size:24
Alignment explanation
Indices: 103865562--103865619 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
103865552 AATAACAACT
*
103865562 AAACTAAAATTACAACTAGAAAGAA
1 AAACT-AAATTACAACTAGAAAAAA
* *
103865587 AACCTAAATTACAAGTA-AAAAATA
1 AAACTAAATTACAACTAGAAAAA-A
103865611 AAACTAAAT
1 AAACTAAAT
103865620 AGTAGACAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 4 0.14
24 20 0.71
25 4 0.14
ACGTcount: A:0.64, C:0.12, G:0.05, T:0.19
Consensus pattern (24 bp):
AAACTAAATTACAACTAGAAAAAA
Found at i:103868175 original size:40 final size:40
Alignment explanation
Indices: 103868120--103868329 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
103868110 AACATTGGAA
103868120 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
103868160 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
103868200 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
103868240 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
103868279 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
103868320 CTATATCCGG
1 ATATATCCGG
103868330 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:103880516 original size:80 final size:80
Alignment explanation
Indices: 103880432--103880580 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
103880422 TATGGTAACC
* * * *
103880432 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
103880496 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
103880512 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
103880577 CCGG
66 CCGG
103880581 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:103880522 original size:40 final size:38
Alignment explanation
Indices: 103880473--103880580 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
103880463 ATCACGATTT
*
103880473 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
103880513 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
103880553 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
103880581 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:103885120 original size:80 final size:80
Alignment explanation
Indices: 103884983--103885160 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 80
103884973 TGAATGATAC
* * * * * * * *
103884983 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAATTATATCTGGGCTAAGACTCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
103885047 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* *
103885063 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTAACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
103885128 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
103885143 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
103885161 TACGTGACTC
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 65 0.78
81 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTAACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:103885145 original size:40 final size:40
Alignment explanation
Indices: 103884983--103885160 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
103884973 TGAATGATAC
* * * *
103884983 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTAATTATAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAATTATAT
* * * * **
103885023 CTGGGCTAAGACTCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTAATTATAT
* * *
103885063 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTAACTAAAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAATTATAT
* **
103885103 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAATTATAT
103885143 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
103885161 TACGTGACTC
Statistics
Matches: 113, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 93 0.82
41 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAATTATAT
Found at i:103886834 original size:29 final size:29
Alignment explanation
Indices: 103886800--103886961 Score: 209
Period size: 29 Copynumber: 5.6 Consensus size: 29
103886790 TACTCGATTT
** * *
103886800 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
103886829 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
103886858 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103886887 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103886916 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103886945 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
103886962 CTCGTCACCG
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103894803 original size:29 final size:29
Alignment explanation
Indices: 103894769--103894929 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
103894759 TACTCGATTT
** * *
103894769 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
103894798 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
103894827 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103894856 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103894885 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103894914 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103894930 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103899529 original size:11 final size:11
Alignment explanation
Indices: 103899497--103899531 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
103899487 ATGCCATTTT
*
103899497 CCATCCCTCTT
1 CCATCCCTCTC
103899508 CCATCCCTCTC
1 CCATCCCTCTC
103899519 CCATCCCTCTC
1 CCATCCCTCTC
103899530 CC
1 CC
103899532 TCTCCCCCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.09, C:0.63, G:0.00, T:0.29
Consensus pattern (11 bp):
CCATCCCTCTC
Found at i:103904788 original size:39 final size:39
Alignment explanation
Indices: 103904741--103904923 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
103904731 AATGTTCGAG
103904741 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
103904780 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
103904819 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
103904858 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
103904898 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
103904924 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:103907304 original size:29 final size:29
Alignment explanation
Indices: 103907271--103907339 Score: 138
Period size: 29 Copynumber: 2.4 Consensus size: 29
103907261 CGAGATTGAA
103907271 ACTAAGTGTGCATGCTGGAAATATATGGC
1 ACTAAGTGTGCATGCTGGAAATATATGGC
103907300 ACTAAGTGTGCATGCTGGAAATATATGGC
1 ACTAAGTGTGCATGCTGGAAATATATGGC
103907329 ACTAAGTGTGC
1 ACTAAGTGTGC
103907340 GAGCTCGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (29 bp):
ACTAAGTGTGCATGCTGGAAATATATGGC
Found at i:103907355 original size:29 final size:29
Alignment explanation
Indices: 103907271--103907399 Score: 102
Period size: 29 Copynumber: 4.4 Consensus size: 29
103907261 CGAGATTGAA
* **
103907271 ACTAAGTGTGC-ATGCTGGAAATATATGGC
1 ACTAAGTGTGCGA-GCTCGAAACGTATGGC
* **
103907300 ACTAAGTGTGC-ATGCTGGAAATATATGGC
1 ACTAAGTGTGCGA-GCTCGAAACGTATGGC
**
103907329 ACTAAGTGTGCGAGCTCGAAGGGTATGGC
1 ACTAAGTGTGCGAGCTCGAAACGTATGGC
* * * *
103907358 ACTATGTGTGCGGGCT-TAAATCGCATGGC
1 ACTAAGTGTGCGAGCTCGAAA-CGTATGGC
103907387 ACTAAGTGTGCGA
1 ACTAAGTGTGCGA
103907400 AATCGAGTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
28 2 0.02
29 83 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGCTCGAAACGTATGGC
Found at i:103911701 original size:41 final size:41
Alignment explanation
Indices: 103911656--103911738 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
103911646 ATTTTGGTAT
103911656 TTTTAAAAGTTGGTTTGGTACTTATGGCATGTATAAGCTAA
1 TTTTAAAAGTTGGTTTGGTACTTATGGCATGTATAAGCTAA
*
103911697 TTTTAAAAGTTGGTTTGGTACTTATGGCATGTATATGCTAA
1 TTTTAAAAGTTGGTTTGGTACTTATGGCATGTATAAGCTAA
103911738 T
1 T
103911739 AACTCTTTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (41 bp):
TTTTAAAAGTTGGTTTGGTACTTATGGCATGTATAAGCTAA
Found at i:103913706 original size:59 final size:59
Alignment explanation
Indices: 103913532--103913720 Score: 294
Period size: 56 Copynumber: 3.2 Consensus size: 59
103913522 GACAAGATTG
* * * * * *
103913532 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
103913592 GCACTAAGTGTGCGAGCTG-AAA--ATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
103913648 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
103913707 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
103913721 GATTCACTAT
Statistics
Matches: 120, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
56 50 0.42
57 3 0.03
58 3 0.03
59 49 0.41
60 15 0.12
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:103913732 original size:29 final size:29
Alignment explanation
Indices: 103913562--103913720 Score: 286
Period size: 29 Copynumber: 5.5 Consensus size: 29
103913552 AAAATTGTAC
*
103913562 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
103913591 AGCACTAAGTGTGCGAGCTG-AAA-ATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
103913618 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
103913647 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
103913677 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
103913706 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
103913721 GATTCACTAT
Statistics
Matches: 126, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
27 24 0.19
28 6 0.05
29 67 0.53
30 29 0.23
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:103917712 original size:40 final size:39
Alignment explanation
Indices: 103917629--103917811 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
103917619 TTGAATGATG
* * * * *
103917629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
103917669 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
103917709 TCCGGGCCAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
103917748 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
**
103917789 -CCGGGCTTTGTCCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATT
103917812 TGAGTGAGTC
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 32 0.27
40 78 0.66
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:103917765 original size:79 final size:82
Alignment explanation
Indices: 103917629--103917813 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
103917619 TTGAATGATG
* * *
103917629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
103917693 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* * * **
103917709 TCCGGGCCAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
103917771 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
**
103917789 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
103917814 AGTGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:103922819 original size:29 final size:29
Alignment explanation
Indices: 103922777--103922835 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
103922767 GTTTTCACTG
103922777 TTAATAATTTGCATGCTTATTAACCCTTA
1 TTAATAATTTGCATGCTTATTAACCCTTA
*
103922806 TTAATAATTTGCATGTTTATTAACCCTTA
1 TTAATAATTTGCATGCTTATTAACCCTTA
103922835 T
1 T
103922836 CTATGTTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.15, G:0.07, T:0.47
Consensus pattern (29 bp):
TTAATAATTTGCATGCTTATTAACCCTTA
Found at i:103930737 original size:46 final size:45
Alignment explanation
Indices: 103930684--103930944 Score: 126
Period size: 47 Copynumber: 5.6 Consensus size: 45
103930674 TGTGAGCTAT
103930684 TGTAAGACATGTCTGGGACATGCATCAACCACATTATG-AGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATC-ACCACATTA-GAAGAGCCAG
* * * * *
103930730 TGTAAGACTATGTCTAGCACATGGCATCA--GCATTGAGACAAGGGCTAG
1 TGTAAGAC-ATGTCTGGGACAT-GCATCACCACATT-AG--AAGAGCCAG
* * * * *
103930778 TGTAAGAGATGTCTGGAACATGCATCGGCCAC--GAGACGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATC-ACCACATTAGAAG--AGCCAG
* * ** *
103930824 TGTAAGACATGTCTGGGACATGCATCGACTACGA-GAGAATCGTCAG
1 TGTAAGACATGTCTGGGACATGCATC-ACCAC-ATTAGAAGAGCCAG
*
103930870 TGTAAGACCATGTCTGGGACATGGCAT--CGAC-TTGAGATATGAGCCAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCACCACATT-AGA-A-GAGCCAG
* *
103930917 TGTAAGACCGTGTCTAGGACATGGCATC
1 TGTAAGA-CATGTCTGGGACAT-GCATC
103930945 TGCACCTTAC
Statistics
Matches: 166, Mismatches: 29, Indels: 38
0.71 0.12 0.16
Matches are distributed among these distances:
44 2 0.01
45 11 0.07
46 60 0.36
47 66 0.40
48 26 0.16
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCACCACATTAGAAGAGCCAG
Found at i:103930918 original size:47 final size:47
Alignment explanation
Indices: 103930723--103930944 Score: 177
Period size: 47 Copynumber: 4.7 Consensus size: 47
103930713 CACATTATGA
* * * * *
103930723 GAGCCAGTGTAAGACTATGTCTAGCACATGGCATC-AGCATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TCGAGACAT
* * * * * * *
103930771 GGGCTAGTGTAAGA-GATGTCTGGAACAT-GCATCGGCCACGAGACGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGACAT
* *
103930817 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGAGAAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGA-CAT
* * * *
103930864 -CGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACAT
* *
103930910 GAGCCAGTGTAAGACCGTGTCTAGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
103930945 TGCACCTTAC
Statistics
Matches: 140, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.01
46 56 0.40
47 61 0.44
48 21 0.15
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACAT
Found at i:103930939 original size:140 final size:141
Alignment explanation
Indices: 103930684--103930944 Score: 304
Period size: 140 Copynumber: 1.9 Consensus size: 141
103930674 TGTGAGCTAT
* *
103930684 TGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTGTAAGACTATGTCTAGCA
1 TGTAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTCTAGCA
* *
103930749 CATGGCATCAGCATTGAGACAAGGGCTAGTGTAAGAGATGTCTGGAACAT-GCATCGGCCACGAG
66 CATGGCATCAGCATTGAGACAAGAGCCAGTGTAAGAGATGTCTGGAACATGGCATCGGCCACGAG
103930813 ACGTAAGCCAG
131 ACGTAAGCCAG
* * * *
103930824 TGTAAGACATGTCTGGGACATGCATCGACTAC--GA-GAGAATCGTCAGTGTAAGACCATGTCTG
1 TGTAAGACATGTCTGGGACATGCATCAACCACATGATGAG-A--GCCAGTGTAAGACCATGTCTA
* * *
103930886 GGACATGGCATC-G-ACTTGAGATATGAGCCAGTGTAAGACCG-TGTCTAGG-ACATGGCATC
63 GCACATGGCATCAGCA-TTGAGACAAGAGCCAGTGTAAGA--GATGTCT-GGAACATGGCATC
103930945 TGCACCTTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 15
0.80 0.09 0.12
Matches are distributed among these distances:
137 3 0.03
138 3 0.03
139 20 0.20
140 68 0.67
141 8 0.08
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTCTAGCA
CATGGCATCAGCATTGAGACAAGAGCCAGTGTAAGAGATGTCTGGAACATGGCATCGGCCACGAG
ACGTAAGCCAG
Found at i:103935276 original size:18 final size:18
Alignment explanation
Indices: 103935235--103935271 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
103935225 CATAAGCAAC
*
103935235 AAAAATTTTAAAAAATTT
1 AAAAATTTTAAAAAAATT
103935253 AAAAATTTTAATAAAAATT
1 AAAAATTTTAA-AAAAATT
103935272 GAAATATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATTTTAAAAAAATT
Found at i:103935511 original size:22 final size:22
Alignment explanation
Indices: 103935486--103935531 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
103935476 AATTTATAAC
103935486 TAATCAAAACAAA-TAAAAAATA
1 TAATC-AAACAAATTAAAAAATA
**
103935508 TAATCATCCAAATTAAAAAATA
1 TAATCAAACAAATTAAAAAATA
103935530 TA
1 TA
103935532 TAGTCCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (22 bp):
TAATCAAACAAATTAAAAAATA
Found at i:103939562 original size:28 final size:29
Alignment explanation
Indices: 103939471--103939592 Score: 183
Period size: 29 Copynumber: 4.2 Consensus size: 29
103939461 AAGTCTACAT
* *
103939471 ACATGCATATGGCCCACTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCCTAAATC
* *
103939500 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCTAAATC
*
103939529 ACATTCGTATGGCCCATTAGGCC-AAATC
1 ACATTCATATGGCCCATTAGGCCTAAATC
*
103939557 ACATTCATATGGCCCATTAGACCTAAATC
1 ACATTCATATGGCCCATTAGGCCTAAATC
103939586 ACATTCA
1 ACATTCA
103939593 CATACATGCT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
28 26 0.31
29 58 0.69
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCTAAATC
Found at i:103939572 original size:57 final size:58
Alignment explanation
Indices: 103939478--103939591 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 58
103939468 CATACATGCA
* *
103939478 TATGGCCCACTAGGCCTAAATCTCATTCATATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCACTAGGCCTAAATCACATTCATATGGCCCATTAGACCCAAATCACATTCG
* *
103939536 TATGGCCCATTAGGCC-AAATCACATTCATATGGCCCATTAGACCTAAATCACATTC
1 TATGGCCCACTAGGCCTAAATCACATTCATATGGCCCATTAGACCCAAATCACATTC
103939592 ACATACATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 37 0.71
58 15 0.29
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (58 bp):
TATGGCCCACTAGGCCTAAATCACATTCATATGGCCCATTAGACCCAAATCACATTCG
Found at i:103943244 original size:34 final size:34
Alignment explanation
Indices: 103943191--103943267 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
103943181 TATCAATTAA
* * * *
103943191 GCCTTAGCCTATTTCAGTAACCA-TAGCGGTCTGG
1 GCCTAAGCCCATTTCAGTAA-CAGTAACAGTCTGG
*
103943225 GCCTGAGCCCATTTCAGTAACAGTAACAGTCTGG
1 GCCTAAGCCCATTTCAGTAACAGTAACAGTCTGG
103943259 GCCTAAGCC
1 GCCTAAGCC
103943268 AGTTAACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 2 0.05
34 35 0.95
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (34 bp):
GCCTAAGCCCATTTCAGTAACAGTAACAGTCTGG
Found at i:103946413 original size:24 final size:25
Alignment explanation
Indices: 103946368--103946438 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 25
103946358 GAGGAAGTGC
*
103946368 AAAAGGGCTTTTTGCCCTAGTTTA-CA
1 AAAAGGGC--TTTGCCCCAGTTTATCA
103946394 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
103946419 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
103946439 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
24 13 0.30
25 22 0.51
26 8 0.19
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:103946451 original size:24 final size:24
Alignment explanation
Indices: 103946394--103946465 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
103946384 CTAGTTTACA
103946394 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
103946418 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
103946442 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
103946466 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:103946693 original size:30 final size:30
Alignment explanation
Indices: 103946659--103946743 Score: 118
Period size: 30 Copynumber: 2.8 Consensus size: 30
103946649 CATTTACAGT
103946659 AAAGGCTTCGGCCCAGTGATATGTTAATGA
1 AAAGGCTTCGGCCCAGTGATATGTTAATGA
* * *
103946689 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATG-TTAATGA
*
103946720 AAAGGCTTTGGCCCAGT-ATATGTT
1 AAAGGCTTCGGCCCAGTGATATGTT
103946744 GAGATTGAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 1 0.02
30 26 0.54
31 21 0.44
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGATATGTTAATGA
Found at i:103954354 original size:25 final size:25
Alignment explanation
Indices: 103954307--103954377 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
103954297 GAGGAAGTGC
* *
103954307 AAAAGGGCTTTTACCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
103954333 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
103954358 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
103954378 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 34 0.81
26 8 0.19
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:103954390 original size:24 final size:24
Alignment explanation
Indices: 103954306--103954404 Score: 78
Period size: 25 Copynumber: 4.0 Consensus size: 24
103954296 GGAGGAAGTG
* *
103954306 CAAAAG-GGCTTTTACCCCAGTTTAC
1 CAAAAGAGGC-TTTGCCCCAG-TTAT
103954331 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAG-TTAT
103954356 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
103954380 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
103954405 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
24 19 0.30
25 37 0.58
26 8 0.12
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:103954632 original size:30 final size:31
Alignment explanation
Indices: 103954598--103954680 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
103954588 CGTTTACAGT
103954598 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
103954628 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
103954659 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
103954681 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 26 0.54
31 22 0.46
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:103962380 original size:93 final size:93
Alignment explanation
Indices: 103962268--103962438 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
103962258 GCCCATAAGC
* *
103962268 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103962333 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
*
103962361 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103962426 CGAGTTCGGATGC
66 CGAGTTCGGATGC
103962439 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:103962435 original size:46 final size:46
Alignment explanation
Indices: 103962260--103962435 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
103962250 TGTAACCCGC
* * * *
103962260 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
103962306 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
103962356 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
103962399 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103962436 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 30 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:103970471 original size:39 final size:39
Alignment explanation
Indices: 103970428--103970587 Score: 243
Period size: 39 Copynumber: 4.2 Consensus size: 39
103970418 TATGGTAACC
* * *
103970428 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
103970467 CGCACAATTGCCTT--GGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103970504 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103970543 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
103970582 CGCACA
1 CGCACA
103970588 TTCATACACA
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
37 32 0.29
39 77 0.71
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:103973863 original size:12 final size:12
Alignment explanation
Indices: 103973835--103973870 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
103973825 GCAAATGAAT
*
103973835 CATTTCTCATTTT
1 CATTTC-CATTTC
103973848 CATTTCCATTTC
1 CATTTCCATTTC
103973860 CATTTCCATTT
1 CATTTCCATTT
103973871 TTGAGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATTTCCATTTC
Found at i:103973869 original size:18 final size:19
Alignment explanation
Indices: 103973835--103973870 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
103973825 GCAAATGAAT
*
103973835 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
103973854 CATTTC-CATTTCCATTT
1 CATTTCTCATTTCCATTT
103973871 TTGAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:103978213 original size:40 final size:39
Alignment explanation
Indices: 103978164--103978369 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 39
103978154 TCTTCGGAAT
* *
103978164 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
103978203 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
103978243 TTAGCCC-GATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
103978282 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
103978322 TTAGCCC-GATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
103978361 TTAGCCCGG
1 TTAGCCCGG
103978370 GTATCATTCA
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
39 69 0.48
40 72 0.50
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:103978282 original size:39 final size:39
Alignment explanation
Indices: 103978164--103978368 Score: 232
Period size: 39 Copynumber: 5.2 Consensus size: 39
103978154 TCTTCGGAAT
* * * *
103978164 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
103978203 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCC-GATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103978243 TTAGCCCGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103978282 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCC-GATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103978322 TTAGCCCGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGATATAA-CAACTAGCACAAATGCCTTCGGGTC
103978361 TTAGCCCG
1 TTAGCCCG
103978369 GGTATCATTC
Statistics
Matches: 142, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 72 0.51
40 70 0.49
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:103978290 original size:79 final size:77
Alignment explanation
Indices: 103978164--103978369 Score: 250
Period size: 79 Copynumber: 2.6 Consensus size: 77
103978154 TCTTCGGAAT
* * * * *** *
103978164 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACA
1 TTAGCCCGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
103978229 AATGCCTTCGGGTC
64 AATGCCTTCGGGTC
* *
103978243 TTAGCCCGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACG
1 TTAGCCCGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACA
103978308 AATGCCTTCGGGTC
64 AATGCCTTCGGGTC
* *
103978322 TTAGCCCGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
103978370 GTATCATTCA
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 106 0.96
80 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (77 bp):
TTAGCCCGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
TGCCTTCGGGTC
Found at i:103986253 original size:40 final size:39
Alignment explanation
Indices: 103986204--103986411 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
103986194 TCTTCGGAAT
* *
103986204 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
103986243 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
103986283 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
103986323 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
103986363 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
103986403 TTAGCCCGG
1 TTAGCCCGG
103986412 GTATCATTCA
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 141 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:103990330 original size:17 final size:18
Alignment explanation
Indices: 103990297--103990331 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
103990287 AAGGCCTTAT
*
103990297 TGGGCCGTGTTGGCCCCA
1 TGGGCCGTGTGGGCCCCA
103990315 TGGGCC-TGTGGGCCCCA
1 TGGGCCGTGTGGGCCCCA
103990332 CATGGGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.06, C:0.34, G:0.40, T:0.20
Consensus pattern (18 bp):
TGGGCCGTGTGGGCCCCA
Found at i:103990667 original size:13 final size:13
Alignment explanation
Indices: 103990649--103990674 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103990639 GGTTGTTTAT
103990649 TAAACTAATTAAC
1 TAAACTAATTAAC
103990662 TAAACTAATTAAC
1 TAAACTAATTAAC
103990675 CAATTAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:103993554 original size:6 final size:6
Alignment explanation
Indices: 103993545--103993577 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
103993535 AATTAAATTG
*
103993545 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
103993578 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:103998525 original size:46 final size:45
Alignment explanation
Indices: 103998466--103998633 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 45
103998456 ACCCATAAGC
*
103998466 GAACTCGGACTCAACTCAACGAGCTC-GAGCATTTGCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCATA-GT
* * * * * *
103998512 GAACTCGGACTCAACTCAATGAGTTCGGGTGCCTAGTTACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTC--G-GAC-ATTTGCATCCAT-AGT
*
103998559 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AGT
103998605 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
103998634 TGCTCAACCA
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 3 0.03
46 53 0.54
47 25 0.26
48 1 0.01
49 2 0.02
50 7 0.07
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAGT
Found at i:103998652 original size:46 final size:45
Alignment explanation
Indices: 103998458--103998644 Score: 141
Period size: 46 Copynumber: 4.1 Consensus size: 45
103998448 TGTAACCAAC
* * * ** *
103998458 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG-GAATGCGCAA
* * *
103998504 CCATAGGTGAACTCGGACTCAACTCAATGAGTTCGG-GTGC-CTAGTTA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGC-A---A
* * * *
103998551 -CATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAA
*
103998597 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
103998641 CCAT
1 CCAT
103998645 CCTAGTGACA
Statistics
Matches: 110, Mismatches: 20, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 3 0.03
46 61 0.55
47 29 0.26
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
Found at i:104001061 original size:15 final size:15
Alignment explanation
Indices: 104001013--104001092 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
104001003 CAAAGATAAT
*
104001013 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
104001027 TAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
104001042 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
104001057 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* * *
104001072 AAGAGATCTAGGATA
1 AAGAAATCCAGAATA
104001087 AAGAAA
1 AAGAAA
104001093 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 8 0.15
15 44 0.83
16 1 0.02
ACGTcount: A:0.57, C:0.12, G:0.17, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:104001062 original size:30 final size:30
Alignment explanation
Indices: 104001013--104001101 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
104001003 CAAAGATAAT
*
104001013 AAGAAAACC-GAATATAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
104001042 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * * *
104001072 AAGAGATCTAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
104001102 CGATATTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 9 0.19
30 37 0.77
31 2 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:104001101 original size:15 final size:15
Alignment explanation
Indices: 104001028--104001101 Score: 62
Period size: 15 Copynumber: 4.9 Consensus size: 15
104001018 AACCGAATAT
*
104001028 AGAAATCCAAGATAG
1 AGAAATCCAAGATAA
*
104001043 AGAAA-CCCAGAATAA
1 AGAAATCCAAG-ATAA
104001058 AGAAATCC-AGAATAA
1 AGAAATCCAAG-ATAA
* * *
104001073 AGAGATCTAGGATAA
1 AGAAATCCAAGATAA
*
104001088 AGAAACCCAAGATA
1 AGAAATCCAAGATA
104001102 CGATATTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
14 4 0.09
15 40 0.85
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:104004202 original size:93 final size:93
Alignment explanation
Indices: 104004041--104004212 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
104004031 TGCCCATAAG
* * * * *
104004041 CGAACTCGGACTCAACTTAACGAGCTCGGGCGTTCACATCCATAGGTGAACTCAGACTCAACTTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
104004106 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
104004134 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC-GAACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAG-ACTCAACTC
104004198 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
104004213 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:104004228 original size:46 final size:45
Alignment explanation
Indices: 104004135--104004220 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
104004125 TACATTTCAC
* * *
104004135 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGAACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
104004181 GAACTCGAACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGAACTCAACTCAACGAGTTCGGAATGCGCAACCAT
104004221 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
GAACTCGAACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:104007362 original size:13 final size:13
Alignment explanation
Indices: 104007344--104007372 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
104007334 GGTTGTTTAT
104007344 TAAACTAATTAAC
1 TAAACTAATTAAC
104007357 TAAACTAATTAAC
1 TAAACTAATTAAC
104007370 TAA
1 TAA
104007373 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:104025694 original size:46 final size:46
Alignment explanation
Indices: 104025644--104025819 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
104025634 TGGTTGAGCA
104025644 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104025690 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
104025735 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104025783 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104025820 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:104025800 original size:93 final size:93
Alignment explanation
Indices: 104025641--104025812 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
104025631 GGATGGTTGA
* *
104025641 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104025706 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
104025734 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104025799 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
104025813 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104031115 original size:40 final size:40
Alignment explanation
Indices: 104031031--104031180 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
104031021 AAATTGAATG
* * *
104031031 ATATCCGGGCTAAG-CCCGAAGACAATATGCTG-GA--AATT
1 ATATCCGGGCTAAGACCCGAAGGCAAT-TG-TGCGAGTGACT
* * *
104031069 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * *
104031109 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* *
104031149 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
104031181 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
37 2 0.02
38 16 0.18
39 14 0.15
40 57 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:104038396 original size:40 final size:40
Alignment explanation
Indices: 104038267--104038397 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
104038257 TATGCTGGAA
* * *
104038267 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * *
104038307 GCTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
104038347 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
*
104038387 ATTAAATCCGG
1 ATTATATCCGG
104038398 TTATATTCCG
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:104042879 original size:46 final size:46
Alignment explanation
Indices: 104042829--104043004 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
104042819 TGGTTGAGCA
104042829 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104042875 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
104042920 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104042968 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104043005 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:104042985 original size:93 final size:93
Alignment explanation
Indices: 104042826--104042997 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
104042816 GGATGGTTGA
* *
104042826 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104042891 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
104042919 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104042984 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
104042998 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104052541 original size:24 final size:24
Alignment explanation
Indices: 104052507--104052559 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
104052497 GGAGAGTGTG
104052507 GCGCCTACTCCCGCACAAGGGACA
1 GCGCCTACTCCCGCACAAGGGACA
* *
104052531 GCGCCTGCTCCCGCACAAGGGATA
1 GCGCCTACTCCCGCACAAGGGACA
104052555 GCGCC
1 GCGCC
104052560 GGCGGACTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.42, G:0.28, T:0.09
Consensus pattern (24 bp):
GCGCCTACTCCCGCACAAGGGACA
Found at i:104058747 original size:39 final size:40
Alignment explanation
Indices: 104058647--104058826 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
104058637 TCGAATGATG
* * *
104058647 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
104058687 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
104058727 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
104058765 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
104058806 -CCGGGCTTCGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
104058827 ATTTGAGCGA
Statistics
Matches: 115, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 61 0.53
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:104058792 original size:78 final size:80
Alignment explanation
Indices: 104058647--104058797 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
104058637 TCGAATGATG
* * * *
104058647 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
104058712 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
104058727 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
104058789 CGTGCGAGT
65 CGTGCGAGT
104058798 CGCTATAACC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.02
78 36 0.57
79 15 0.24
80 11 0.17
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:104058810 original size:78 final size:80
Alignment explanation
Indices: 104058647--104058826 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 80
104058637 TCGAATGATG
* * * *
104058647 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
104058712 GTGCGAGTTAATAAA
66 GTGCGAGTCAATAAA
* **
104058727 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
**
104058789 CGTGCGAGTCGCTATAA
65 CGTGCGAGTCAATA-AA
**
104058806 -CCGGGCTTCGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
104058827 ATTTGAGCGA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.54
79 27 0.32
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATAAA
Found at i:104062731 original size:46 final size:46
Alignment explanation
Indices: 104062681--104062853 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
104062671 TGGTTGAGCA
104062681 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104062727 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
104062772 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
104062820 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
104062854 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:104062837 original size:93 final size:93
Alignment explanation
Indices: 104062678--104062848 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
104062668 GGATGGTTGA
* *
104062678 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104062743 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
104062771 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104062836 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
104062849 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104063114 original size:19 final size:20
Alignment explanation
Indices: 104063077--104063114 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
104063067 ATAAGGTGGT
104063077 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
104063097 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
104063115 TGGTGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:104070291 original size:46 final size:46
Alignment explanation
Indices: 104070241--104070413 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
104070231 TGGTTGAGCA
104070241 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104070287 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
104070332 CATCCGAACTCGTTGAGTTGAGTCTGAGGTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
104070380 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
104070414 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:104070397 original size:93 final size:93
Alignment explanation
Indices: 104070238--104070408 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
104070228 GGATGGTTGA
* * *
104070238 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104070303 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
104070331 GCATCCGAACTCGTTGAGTTGAGTCTGAGGTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
104070396 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
104070409 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGGTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104070674 original size:19 final size:20
Alignment explanation
Indices: 104070637--104070674 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
104070627 ATAAGGTGGT
104070637 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
104070657 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
104070675 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:104077463 original size:24 final size:24
Alignment explanation
Indices: 104077436--104077495 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
104077426 AAGGCTATGC
**
104077436 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACAT
*
104077460 GGCACTATGAGTGCGAGAAAACAT
1 GGCACTATGTGTGCGAGAAAACAT
*
104077484 CGCACTATGTGT
1 GGCACTATGTGT
104077496 ACAAATAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACAT
Found at i:104078641 original size:40 final size:40
Alignment explanation
Indices: 104078596--104078675 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
104078586 ATTACATTGG
104078596 ATTCAAAATTATTGAAACTTAAAAGTGAAAATCTGATTCT
1 ATTCAAAATTATTGAAACTTAAAAGTGAAAATCTGATTCT
104078636 ATTCAAAATTATTGAAACTTAAAAGTGAAAATCTGATTCT
1 ATTCAAAATTATTGAAACTTAAAAGTGAAAATCTGATTCT
104078676 CATGTACGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (40 bp):
ATTCAAAATTATTGAAACTTAAAAGTGAAAATCTGATTCT
Found at i:104081110 original size:28 final size:27
Alignment explanation
Indices: 104081047--104081116 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
104081037 ATAGTGAGTC
*
104081047 CGCACACTTTGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
104081074 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
104081102 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
104081117 GTACGAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:104086257 original size:30 final size:30
Alignment explanation
Indices: 104086222--104086295 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
104086212 CTTAATTGGG
*
104086222 CAAAATGACTATTTTGCCCCTAGACATTCAA
1 CAAAATGACTATTTTGCCCCAAGACATT-AA
104086253 -AAAATGACTATTTTGCCCCAAGACATTAA
1 CAAAATGACTATTTTGCCCCAAGACATTAA
*
104086282 CAAAATGACCATTT
1 CAAAATGACTATTT
104086296 ACCCCTATGC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
29 2 0.05
30 38 0.95
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.28
Consensus pattern (30 bp):
CAAAATGACTATTTTGCCCCAAGACATTAA
Found at i:104089394 original size:40 final size:35
Alignment explanation
Indices: 104089335--104089422 Score: 90
Period size: 40 Copynumber: 2.4 Consensus size: 35
104089325 TTAGTTATTA
*
104089335 TTATTCTTATTATTATTTCTTAATTCTTGTGTTAATTT-T
1 TTATTATTATT-TTATTTCTT-ATT-TTGT-TT-ATTTGT
104089374 TATATTATTATTTTATTTTCTTATTTTGTTTATTTGT
1 T-TATTATTATTTTA-TTTCTTATTTTGTTTATTTGT
104089411 TT-TTATTATTTT
1 TTATTATTATTTT
104089423 TATTCCTTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
35 10 0.22
36 5 0.11
37 4 0.09
38 4 0.09
39 7 0.16
40 15 0.33
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (35 bp):
TTATTATTATTTTATTTCTTATTTTGTTTATTTGT
Found at i:104089414 original size:22 final size:22
Alignment explanation
Indices: 104089381--104089445 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
104089371 TTTTATATTA
*
104089381 TTATTTTATTTTCTTATTTTGT
1 TTATTTTATTTTATTATTTTGT
104089403 TTATTTGT-TTTTATTATTTT-T
1 TTATTT-TATTTTATTATTTTGT
**
104089424 ATTCCTTTATTATTATTATTTT
1 -TTATTTTATT-TTATTATTTT
104089446 TATTCTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
21 2 0.06
22 23 0.64
23 11 0.31
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (22 bp):
TTATTTTATTTTATTATTTTGT
Found at i:104094548 original size:48 final size:48
Alignment explanation
Indices: 104094482--104094708 Score: 209
Period size: 48 Copynumber: 4.9 Consensus size: 48
104094472 ATAGTAAGAA
* * *
104094482 GCCAATGCTATATCCCAGATATGGTCTTACATGAGATCACATATCGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGAT
* *
104094530 GCCAATGCCATGTTCCAGACATGGTCTTACATGATG-TCTCATATC---
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGA-GATCACATATCGAT
* * * * * *
104094575 G---ATGCCATGTCCTAAACATGGTCTTAAACGAAATCACATATAGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGAT
* * ** * *
104094620 GTCAATGCCATATCCCAGTTATGGTCTTACATTG-TATCACATACCGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACA-TGAGATCACATATCGAT
* *
104094668 GCTAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACA
104094709 CATAACCCTA
Statistics
Matches: 140, Mismatches: 29, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
42 32 0.23
45 2 0.01
47 2 0.01
48 102 0.73
49 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (48 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGAT
Found at i:104094615 original size:42 final size:42
Alignment explanation
Indices: 104094534--104094620 Score: 95
Period size: 42 Copynumber: 2.1 Consensus size: 42
104094524 ATCGATGCCA
* * * ** * *
104094534 ATGCCATGTTCCAGACATGGTCTTACATGATGTCTCATATCG
1 ATGCCATGTTCCAAACATGGTCTTAAACGAAATCACATATAG
104094576 ATGCCATG-TCCTAAACATGGTCTTAAACGAAATCACATATAG
1 ATGCCATGTTCC-AAACATGGTCTTAAACGAAATCACATATAG
104094618 ATG
1 ATG
104094621 TCAATGCCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
41 3 0.08
42 34 0.92
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATGTTCCAAACATGGTCTTAAACGAAATCACATATAG
Found at i:104094668 original size:90 final size:90
Alignment explanation
Indices: 104094502--104094669 Score: 212
Period size: 90 Copynumber: 1.9 Consensus size: 90
104094492 TATCCCAGAT
* * * * * * *
104094502 ATGGTCTTACATGAGATCACATATCGATGCCAATGCCATGTTCCAGACATGGTCTTACATGATGT
1 ATGGTCTTAAACGAAATCACATATAGATGCCAATGCCATATCCCAGACATGGTCTTACATGATAT
* *
104094567 CTCATATCGATGCCATGTCCTAAAC
66 CACATACCGATGCCATGTCCTAAAC
* **
104094592 ATGGTCTTAAACGAAATCACATATAGATGTCAATGCCATATCCCAGTTATGGTCTTACATTG-TA
1 ATGGTCTTAAACGAAATCACATATAGATGCCAATGCCATATCCCAGACATGGTCTTACA-TGATA
104094656 TCACATACCGATGC
65 TCACATACCGATGC
104094670 TAATGCCATG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 63 0.97
91 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (90 bp):
ATGGTCTTAAACGAAATCACATATAGATGCCAATGCCATATCCCAGACATGGTCTTACATGATAT
CACATACCGATGCCATGTCCTAAAC
Found at i:104102546 original size:48 final size:48
Alignment explanation
Indices: 104102479--104102708 Score: 213
Period size: 48 Copynumber: 4.9 Consensus size: 48
104102469 CACATAGTAA
* * *
104102479 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGAATCACATCTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATC
* * *
104102527 GATGCCAATGCCATGTCCCAAACATGGTCTTACAT-GATGTCTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGA-ATCACATATC
* * * * * *
104102575 ---G---ATGCCATGTCCCAAACATGGTTTTAAACGAAATCACATATA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATC
* * * * * *
104102617 GATGTCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATC
** *
104102665 GATGCCAATGCCATGTCTTAGACATGGTCTTACATGGTATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAATCACA
104102709 CATAACCCTA
Statistics
Matches: 146, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
42 32 0.22
43 1 0.01
45 2 0.01
47 2 0.01
48 109 0.75
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAATCACATATC
Found at i:104102615 original size:42 final size:42
Alignment explanation
Indices: 104102534--104102620 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
104102524 CTCGATGCCA
* * ** * *
104102534 ATGCCATGTCCCAAACATGGTCTTACATGATGTCTCATATCG
1 ATGCCATGTCCCAAACATGGTCTTAAACGAAATCACATATAG
*
104102576 ATGCCATGTCCCAAACATGGTTTTAAACGAAATCACATATAG
1 ATGCCATGTCCCAAACATGGTCTTAAACGAAATCACATATAG
104102618 ATG
1 ATG
104102621 TCAATGCCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATGTCCCAAACATGGTCTTAAACGAAATCACATATAG
Found at i:104104209 original size:48 final size:48
Alignment explanation
Indices: 104104136--104104467 Score: 253
Period size: 48 Copynumber: 6.9 Consensus size: 48
104104126 GCCAGTTGGG
* *
104104136 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * * * *
104104184 CGATATGAGAGCCAGTGTAAAACCATGTTTGGAACATGGCATC-AGCGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCA
* * * *
104104232 TGTTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * * ** **
104104279 TTGATATGTGCA-CTAGTGTAAGACCATGTATGAAACATGGCATCGGGCA
1 -TGATATGAG-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * * * * * *
104104328 T-ATTATGAAAGCCAATGTAAGACAATTTCTAGGACATGGCGTCG-GCA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * * *
104104375 TTGAGATGAGATCTAGTGTAAGACCATGTTTGGGACATGGCATCGACC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
* * * * * *
104104423 TCGACATGTGAGCCAGTGTAATACCATGTTTGGAACATGGTATCG
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
104104468 GTAATTCACC
Statistics
Matches: 222, Mismatches: 52, Indels: 20
0.76 0.18 0.07
Matches are distributed among these distances:
47 8 0.04
48 208 0.94
49 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA
Found at i:104104316 original size:96 final size:96
Alignment explanation
Indices: 104104146--104104419 Score: 329
Period size: 96 Copynumber: 2.9 Consensus size: 96
104104136 TGATATGTGT
* * * *
104104146 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CGATATGAGAGCCAGTGTAAAACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGATATGAGAGCTAGTGTAAGACCAT
*
104104210 GTTTGGAACATGGCATCAGCG-ATGTTATGAAA
65 GTTTGGAACATGGCATC-GCGCATATTATGAAA
* *
104104242 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGCA-CTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGAG-AGCTAGTGTAAGACCAT
* * *
104104306 GTATGAAACATGGCATCGGGCATATTATGAAA
65 GTTTGGAACATGGCATCGCGCATATTATGAAA
* * * * * * * *
104104338 GCCAATGTAAGACAATTTCTAGGACATGGCGTCGGCATTGAGATGAGATCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATG
*
104104403 TTTGGGACATGGCATCG
66 TTTGGAACATGGCATCG
104104420 ACCTCGACAT
Statistics
Matches: 152, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
95 6 0.04
96 145 0.95
97 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATG
TTTGGAACATGGCATCGCGCATATTATGAAA
Found at i:104105420 original size:31 final size:31
Alignment explanation
Indices: 104105382--104105445 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
104105372 CCTTTTCATA
* *
104105382 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
**
104105413 TTTCATATTTCATATTACTAGGCCAAAGCCT
1 TTTCATATTTCATAACACTAGGCCAAAGCCT
104105444 TT
1 TT
104105446 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCAAAGCCT
Found at i:104105687 original size:25 final size:24
Alignment explanation
Indices: 104105659--104105854 Score: 227
Period size: 25 Copynumber: 8.1 Consensus size: 24
104105649 GCCTAGACTC
*
104105659 TTTTAGTAACTGGGGCAAAAGCCCT
1 TTTTA-TAACTGGGGCATAAGCCCT
104105684 TTTTATAACTGGGGCATAAGCCCT
1 TTTTATAACTGGGGCATAAGCCCT
**
104105708 TTATCGTAACTGGGGCATAAGCCCT
1 TT-TTATAACTGGGGCATAAGCCCT
* * *
104105733 TCATCATAACTGGGGCATAAGCTCT
1 T-TTTATAACTGGGGCATAAGCCCT
*
104105758 TTATCATAACTGGGGCATAAGCCC-
1 TT-TTATAACTGGGGCATAAGCCCT
* *
104105782 TTTAATAACTAGGGCATAAGCCC-
1 TTTTATAACTGGGGCATAAGCCCT
* *
104105805 TTTAATAACTGGGGCATATGCCC-
1 TTTTATAACTGGGGCATAAGCCCT
*
104105828 TTTAATAACTGGGGCATAAGCCCT
1 TTTTATAACTGGGGCATAAGCCCT
104105852 TTT
1 TTT
104105855 GCACTTCCTC
Statistics
Matches: 154, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
23 62 0.40
24 25 0.16
25 67 0.44
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
TTTTATAACTGGGGCATAAGCCCT
Found at i:104105695 original size:49 final size:49
Alignment explanation
Indices: 104105638--104105853 Score: 239
Period size: 46 Copynumber: 4.5 Consensus size: 49
104105628 TGCTTTATCA
* *
104105638 TATAACTGGAGGCCT-AGACTCTTT-TAGTAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAG-CTCTTTATAGTAACTGGGGCATAAGCCCTTTT
* * *
104105687 TATAACTGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCTCTTTATAGTAACTGGGGCATAAGCCCTT-TT
*
104105737 CATAACTGGGGCATAAGCTCTTTATCA-TAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCTCTTTAT-AGTAACTGGGGCATAAGCCCTTTT
* * * *
104105785 AATAACTAGGGCATAAGCCCTTTA-A-TAACTGGGGCATATGCCC-TTT
1 TATAACTGGGGCATAAGCTCTTTATAGTAACTGGGGCATAAGCCCTTTT
* *
104105831 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCTCTTT
104105854 TGCACTTCCT
Statistics
Matches: 149, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
46 43 0.29
48 31 0.21
49 33 0.22
50 42 0.28
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (49 bp):
TATAACTGGGGCATAAGCTCTTTATAGTAACTGGGGCATAAGCCCTTTT
Found at i:104105760 original size:50 final size:48
Alignment explanation
Indices: 104105665--104105853 Score: 274
Period size: 50 Copynumber: 3.9 Consensus size: 48
104105655 ACTCTTTTAG
* * *
104105665 TAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTATCG
1 TAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTATCA
* *
104105714 TAACTGGGGCATAAGCCCTTCATCATAACTGGGGCATAAGCTCTTTATCA
1 TAACTGGGGCATAAGCCCTT--TAATAACTGGGGCATAAGCCCTTTATCA
*
104105764 TAACTGGGGCATAAGCCCTTTAATAACTAGGGCATAAGCCCTTTA--A
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCA
*
104105810 TAACTGGGGCATATGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
104105854 TGCACTTCCT
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
46 43 0.33
48 24 0.19
49 17 0.13
50 45 0.35
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (48 bp):
TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCA
Found at i:104105796 original size:23 final size:23
Alignment explanation
Indices: 104105660--104105853 Score: 253
Period size: 23 Copynumber: 8.1 Consensus size: 23
104105650 CCTAGACTCT
* *
104105660 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
104105683 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
104105707 TTTATCGTAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
* *
104105732 TTCATCATAACTGGGGCATAAGCTC
1 TT--TAATAACTGGGGCATAAGCCC
104105757 TTTATCATAACTGGGGCATAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
104105782 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
104105805 TTTAATAACTGGGGCATATGCCC
1 TTTAATAACTGGGGCATAAGCCC
104105828 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
104105851 TTT
1 TTT
104105854 TGCACTTCCT
Statistics
Matches: 150, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
23 68 0.45
24 20 0.13
25 61 0.41
27 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:104105995 original size:25 final size:25
Alignment explanation
Indices: 104105967--104106014 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
104105957 ATATATAAAC
* * *
104105967 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
104105992 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
104106015 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:104107264 original size:27 final size:27
Alignment explanation
Indices: 104107173--104107256 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
104107163 GGGCATATTC
* *
104107173 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
104107200 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
104107227 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
104107254 GTC
1 GTC
104107257 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:104107270 original size:27 final size:27
Alignment explanation
Indices: 104107173--104107273 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
104107163 GGGCATATTC
* * *
104107173 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTATAGGGGCT-TTACG
*
104107200 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
104107227 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTACCCTATAGGGGCTTTACG
**
104107254 GTCTTTTTA-CCTAATAGGGG
1 GTCACTTTACCCT-ATAGGGG
104107274 TATTTTAGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 3 0.04
27 63 0.94
28 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
GTCACTTTACCCTATAGGGGCTTTACG
Found at i:104107348 original size:27 final size:27
Alignment explanation
Indices: 104107315--104107654 Score: 175
Period size: 27 Copynumber: 12.6 Consensus size: 27
104107305 TTGGTAAATC
*
104107315 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** * *
104107342 TGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAATCAAGGGTATTTC-AGTAA-TTT
* ** *
104107370 TAGAAAGTCAAGGGTATTTTTGTAACTT
1 TACAAA-TCAAGGGTATTTCAGTAATTT
** * **
104107398 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** *
104107425 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * **
104107452 CACAAA-CCAGTGGTATTTTGGTAATTT
1 TACAAATCAAG-GGTATTTCAGTAATTT
* **
104107479 TACAAA-CTAGGGGTATTTTGGTAATTT
1 TACAAATC-AAGGGTATTTCAGTAATTT
** * *
104107506 TACAAATTGAGGGTTTTTCTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * *
104107533 TACAAACCAAGGGTATTTTAGCAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * *
104107560 TACAGA-CTAGGGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** * *** *
104107586 TGTAAATCGAGGGTAAAACAGTAATTC
1 TACAAATCAAGGGTATTTCAGTAATTT
** *** *
104107613 TGTAAATCAAGGGTAAAACAGTAATTC
1 TACAAATCAAGGGTATTTCAGTAATTT
*
104107640 TATAAATCAAGGGTA
1 TACAAATCAAGGGTA
104107655 AAACGGTACT
Statistics
Matches: 250, Mismatches: 55, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
26 23 0.09
27 199 0.80
28 15 0.06
29 13 0.05
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCAGTAATTT
Found at i:104107500 original size:81 final size:81
Alignment explanation
Indices: 104107406--104107600 Score: 277
Period size: 81 Copynumber: 2.4 Consensus size: 81
104107396 TTTGTAAATC
104107406 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTT
* *
104107470 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* * *
104107487 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTTTTTCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
*
104107552 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* ** *
104107568 A-GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
104107601 AAACAGTAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 27 0.26
81 73 0.72
82 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:104107624 original size:80 final size:81
Alignment explanation
Indices: 104107406--104107627 Score: 207
Period size: 81 Copynumber: 2.8 Consensus size: 81
104107396 TTTGTAAATC
* * *** *
104107406 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATT-TCACAAACC-AGTGGTATT
1 AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAACCAAG-GGTATT
* *
104107469 TTGGTAATTTTACAAACT
64 TTAGCAATTTTACAAACT
* * **** * *
104107487 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTTTTTCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
*
104107552 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
** ** *
104107568 A-GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
1 AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTA
104107628 AAACAGTAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
80 46 0.38
81 72 0.60
82 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:104107702 original size:27 final size:27
Alignment explanation
Indices: 104107578--104107707 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
104107568 AGGGTATTTT
*
104107578 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
104107605 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
104107632 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
104107659 GGTACTTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
104107686 GGTAATTATGTAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
104107708 CTTTGGTAAT
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 5 0.05
27 89 0.95
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:104110418 original size:93 final size:92
Alignment explanation
Indices: 104110307--104110477 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
104110297 CGCCCATAAG
* *
104110307 CGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
104110372 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
104110399 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
104110464 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
104110478 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 7 0.09
93 68 0.91
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:104110474 original size:46 final size:46
Alignment explanation
Indices: 104110300--104110474 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
104110290 TGTAACCCGC
* * *
104110300 CCATAAGCGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
104110345 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
104110395 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
104110438 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
104110475 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 15 0.14
46 49 0.45
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:104110493 original size:46 final size:46
Alignment explanation
Indices: 104110348--104110486 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
104110338 TTCGCATCCA
104110348 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
104110396 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
104110441 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
104110487 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:104117529 original size:93 final size:93
Alignment explanation
Indices: 104117417--104117588 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
104117407 CGCCCATAAG
* *
104117417 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
104117482 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
104117510 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
104117575 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
104117589 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:104117585 original size:46 final size:46
Alignment explanation
Indices: 104117410--104117585 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
104117400 TGTAACCCGC
* * *
104117410 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
104117456 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
104117506 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
104117549 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
104117586 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.