Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 342 of 770
Found at i:104731930 original size:34 final size:33
Alignment explanation
Indices: 104731879--104731963 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 33
104731869 TATCTAAATA
* *
104731879 TTTTATATATTTTTATATTTATATATTAATATTAT
1 TTTTATATA-TTATATATATATATATTAATATT-T
* **
104731914 TTTTATATATTATATATATATTTATTTCTATTT
1 TTTTATATATTATATATATATATATTAATATTT
*
104731947 TTTGTATACATTATATA
1 TTT-TATATATTATATA
104731964 CAATACAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
33 4 0.09
34 30 0.70
35 9 0.21
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (33 bp):
TTTTATATATTATATATATATATATTAATATTT
Found at i:104733225 original size:14 final size:14
Alignment explanation
Indices: 104733203--104733236 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
104733193 AATAGAAAAC
*
104733203 TTTTCATCACTTTT
1 TTTTTATCACTTTT
104733217 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
104733231 TCTTTA
1 TTTTTA
104733237 GCCTCCGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:104734575 original size:16 final size:16
Alignment explanation
Indices: 104734554--104734604 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
104734544 AAGAAAGAGC
104734554 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
104734570 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
104734586 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
104734602 AAA
1 AAA
104734605 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:104735544 original size:16 final size:17
Alignment explanation
Indices: 104735523--104735556 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
104735513 AATTAGAGAA
104735523 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
104735539 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
104735556 T
1 T
104735557 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:104736249 original size:15 final size:15
Alignment explanation
Indices: 104736231--104736261 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
104736221 ATAACTAAAG
104736231 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
104736246 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
104736261 A
1 A
104736262 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:104741930 original size:26 final size:26
Alignment explanation
Indices: 104741901--104741989 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
104741891 AAATTACAAG
*
104741901 TTATTAGCAATTAATATTAATTTATA
1 TTATTAGTAATTAATATTAATTTATA
* * **
104741927 TTATTTGTTATTAATATTAA-GAATA
1 TTATTAGTAATTAATATTAATTTATA
*
104741952 TTA--AGTAATTAATAAT-ATTTATA
1 TTATTAGTAATTAATATTAATTTATA
104741975 TTATTA-T-ATTAATAT
1 TTATTAGTAATTAATAT
104741990 ATTTCGATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
22 1 0.02
23 23 0.47
24 1 0.02
25 7 0.14
26 17 0.35
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (26 bp):
TTATTAGTAATTAATATTAATTTATA
Found at i:104741981 original size:8 final size:8
Alignment explanation
Indices: 104741970--104742141 Score: 55
Period size: 8 Copynumber: 21.2 Consensus size: 8
104741960 TTAATAATAT
104741970 TTATATTA
1 TTATATTA
104741978 TTATATTA
1 TTATATTA
*
104741986 ATATATTTCGA
1 TTATA-TT--A
*
104741997 TT-TATAAA
1 TTATAT-TA
104742005 TCTATATT-
1 T-TATATTA
104742013 TCTATATTA
1 T-TATATTA
104742022 TT-TATT-
1 TTATATTA
*
104742028 TTATTATTC
1 TTA-TATTA
*
104742037 TATCTATTA
1 T-TATATTA
104742046 TTATATTA
1 TTATATTA
104742054 TCTAT-TTA
1 T-TATATTA
*
104742062 TAAT-TTA
1 TTATATTA
104742069 -TATATTA
1 TTATATTA
104742076 TT-T-TTA
1 TTATATTA
104742082 TATATTATTA
1 T-TA-TATTA
104742092 TTATATATA
1 TTATAT-TA
104742101 TT-T-TTA
1 TTATATTA
104742107 TATATATT-
1 T-TATATTA
*
104742115 TTATTTCTA
1 TTATAT-TA
104742124 TT-TAGTTA
1 TTATA-TTA
*
104742132 TTATTTTA
1 TTATATTA
104742140 TT
1 TT
104742142 TCTATTTAGT
Statistics
Matches: 126, Mismatches: 12, Indels: 52
0.66 0.06 0.27
Matches are distributed among these distances:
6 11 0.09
7 20 0.16
8 56 0.44
9 27 0.21
10 10 0.08
11 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (8 bp):
TTATATTA
Found at i:104742069 original size:43 final size:42
Alignment explanation
Indices: 104742015--104742204 Score: 129
Period size: 43 Copynumber: 4.2 Consensus size: 42
104742005 TCTATATTTC
*
104742015 TATATTATTTATTTTATTATTCTATCTATTATTATATTATCTATT
1 TATA-TATTTATTTTATT-TTCTATATATTATTAT-TTATCTATT
*
104742060 TATA-ATTTATATATTATTTT-TATATATTATTATTATATATATT
1 TATATATTTAT-T-TTATTTTCTATATATTATTATT-TATCTATT
* * *
104742103 TTTATATATATTTTA-TTTCTATTTAGTTATTATTTTATTTCTATT
1 TATATATTTATTTTATTTTCTATATA-TTATTA-TTTA--TCTATT
*
104742148 TAGTTATTATTTATTTT-TATTTCTATTTAGTTATTATTTAGT-TATT
1 TA--TA-TATTTATTTTAT-TTTCTATATA-TTATTATTTA-TCTATT
*
104742194 ATTTATATTTA
1 -TATATATTTA
104742205 GTATATTTAG
Statistics
Matches: 120, Mismatches: 10, Indels: 31
0.75 0.06 0.19
Matches are distributed among these distances:
41 3 0.03
42 9 0.08
43 37 0.31
44 16 0.13
45 17 0.14
46 4 0.03
47 4 0.03
48 13 0.11
49 17 0.14
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (42 bp):
TATATATTTATTTTATTTTCTATATATTATTATTTATCTATT
Found at i:104742081 original size:13 final size:12
Alignment explanation
Indices: 104742065--104742116 Score: 77
Period size: 13 Copynumber: 4.2 Consensus size: 12
104742055 CTATTTATAA
104742065 TTTATATATTATT
1 TTTATATA-TATT
104742078 TTTATATATTATT
1 TTTATATA-TATT
*
104742091 ATTATATATATT
1 TTTATATATATT
104742103 TTTATATATATT
1 TTTATATATATT
104742115 TT
1 TT
104742117 ATTTCTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
12 17 0.46
13 20 0.54
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTATATATATT
Found at i:104742118 original size:11 final size:11
Alignment explanation
Indices: 104742060--104742118 Score: 64
Period size: 13 Copynumber: 4.9 Consensus size: 11
104742050 ATTATCTATT
*
104742060 TATAATTTATA
1 TATATTTTATA
104742071 TATTATTTTTATA
1 TA-TA-TTTTATA
104742084 TATTATTATTATA
1 TA-TATT-TTATA
104742097 TATATTTTTATA
1 TATA-TTTTATA
104742109 TATATTTTAT
1 TATATTTTAT
104742119 TTCTATTTAG
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
11 8 0.19
12 15 0.35
13 20 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTTTATA
Found at i:104742139 original size:22 final size:22
Alignment explanation
Indices: 104742111--104742186 Score: 107
Period size: 22 Copynumber: 3.2 Consensus size: 22
104742101 TTTTTATATA
104742111 TATTTTATTTCTATTTAGTTAT
1 TATTTTATTTCTATTTAGTTAT
104742133 TATTTTATTTCTATTTAGTTATTATT
1 TATTTTATTTCTATTTAG---TTA-T
104742159 TATTTTTATTTCTATTTAGTTAT
1 TA-TTTTATTTCTATTTAGTTAT
104742182 TATTT
1 TATTT
104742187 AGTTATTATT
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.43
23 3 0.06
24 3 0.06
25 3 0.06
26 3 0.06
27 16 0.33
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (22 bp):
TATTTTATTTCTATTTAGTTAT
Found at i:104742158 original size:11 final size:11
Alignment explanation
Indices: 104742122--104742198 Score: 68
Period size: 11 Copynumber: 6.5 Consensus size: 11
104742112 ATTTTATTTC
104742122 TATTTAGTTAT
1 TATTTAGTTAT
104742133 TATTTTA-TT-T
1 TA-TTTAGTTAT
104742143 CTATTTAGTTAT
1 -TATTTAGTTAT
*
104742155 TATTTATTTTTATTT
1 TATTTA--GTTA--T
104742170 CTATTTAGTTAT
1 -TATTTAGTTAT
104742182 TATTTAGTTAT
1 TATTTAGTTAT
104742193 TATTTA
1 TATTTA
104742199 TATTTAGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
10 5 0.09
11 31 0.56
12 6 0.11
13 3 0.05
14 3 0.05
15 1 0.02
16 6 0.11
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (11 bp):
TATTTAGTTAT
Found at i:104742212 original size:49 final size:47
Alignment explanation
Indices: 104742028--104742212 Score: 144
Period size: 49 Copynumber: 3.7 Consensus size: 47
104742018 ATTATTTATT
* * * * *
104742028 TTATTATTCTATCTATTA-TTATATTATCTATTTATAATTTATATATTA-
1 TTATTATTTTAT-TATTATTTATTTTATATATTT-TTATTTCTAT-TTAG
*
104742076 TTTTTATATATTATTATTATATATATTTTTATATATATTTTATTTCTATTTAG
1 TTATTAT-T-TTATTATTAT-T-TA-TTTTATATAT-TTTTATTTCTATTTAG
*
104742129 TTATTATTTTATT-TCTATTTAGTTATTATTTATTTTTATTTCTATTTAG
1 TTATTATTTTATTAT-TATTTA-TT-TTATATATTTTTATTTCTATTTAG
104742178 TTATTA-TTTAGTTATTATTTATATTTAGTATATTT
1 TTATTATTTTA-TTATTATTTAT-TTTA-TATATTT
104742213 AGAATTTATT
Statistics
Matches: 113, Mismatches: 10, Indels: 27
0.75 0.07 0.18
Matches are distributed among these distances:
48 14 0.12
49 47 0.42
50 13 0.12
51 9 0.08
52 6 0.05
53 22 0.19
54 2 0.02
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (47 bp):
TTATTATTTTATTATTATTTATTTTATATATTTTTATTTCTATTTAG
Found at i:104742270 original size:31 final size:33
Alignment explanation
Indices: 104742228--104742301 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 33
104742218 TTATTATTAT
*
104742228 TTAAT-ATTTAATTTAAGT-TAAATAGAA-AAA
1 TTAATAATTTAATTTAAGTATAAATAAAATAAA
*
104742258 TTAATAATTTAATTTAAGTATAATTAAAATAAA
1 TTAATAATTTAATTTAAGTATAAATAAAATAAA
*
104742291 TTATTAATTTA
1 TTAATAATTTA
104742302 TTTTCATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.13
31 13 0.34
32 7 0.18
33 13 0.34
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (33 bp):
TTAATAATTTAATTTAAGTATAAATAAAATAAA
Found at i:104747964 original size:25 final size:25
Alignment explanation
Indices: 104747930--104747979 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
104747920 ATCTAGTTTC
104747930 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
104747955 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
104747980 ATAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTATAATATCTATTTATTTCTA
Found at i:104747971 original size:15 final size:15
Alignment explanation
Indices: 104747930--104747972 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
104747920 ATCTAGTTTC
104747930 TTTTTATAATATCTA
1 TTTTTATAATATCTA
104747945 --TTTAT--T-TCTA
1 TTTTTATAATATCTA
104747955 TTTTTATAATATCTA
1 TTTTTATAATATCTA
104747970 TTT
1 TTT
104747973 ATTTCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 4 0.17
11 1 0.04
12 5 0.22
13 5 0.22
14 1 0.04
15 7 0.30
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTATAATATCTA
Found at i:104747986 original size:21 final size:23
Alignment explanation
Indices: 104747934--104747987 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
104747924 AGTTTCTTTT
*
104747934 TATAATATCTATTTATTTCTATTTT
1 TATAATATCTATTTATTTCTA--TA
104747959 TATAATATCTATTTATTTCTA-A
1 TATAATATCTATTTATTTCTATA
104747981 TA-AATAT
1 TATAATAT
104747988 TTATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
25 21 0.75
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATAATATCTATTTATTTCTATA
Found at i:104764066 original size:29 final size:29
Alignment explanation
Indices: 104764024--104764081 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
104764014 TAAATAAATT
104764024 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
104764053 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
104764082 TCGGTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (29 bp):
CTTTTTTGGAACTACATAGATCTATGGAA
Found at i:104765259 original size:14 final size:14
Alignment explanation
Indices: 104765240--104765267 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
104765230 TATTTACCTT
104765240 CGATCAATATTATC
1 CGATCAATATTATC
104765254 CGATCAATATTATC
1 CGATCAATATTATC
104765268 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:104765835 original size:23 final size:23
Alignment explanation
Indices: 104765809--104765854 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
104765799 GGGATATTAG
104765809 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
104765832 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
104765855 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:104770528 original size:14 final size:15
Alignment explanation
Indices: 104770509--104770548 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
104770499 GAAGATGGAT
104770509 AAATAAA-AAAAAAG
1 AAATAAATAAAAAAG
*
104770523 AAATAAATAAAATAG
1 AAATAAATAAAAAAG
104770538 AATATAAATAA
1 AA-ATAAATAA
104770549 GATAAAGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (15 bp):
AAATAAATAAAAAAG
Found at i:104771228 original size:11 final size:11
Alignment explanation
Indices: 104771212--104771236 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
104771202 GCGATTATTG
104771212 TATTTATTGTA
1 TATTTATTGTA
104771223 TATTTATTGTA
1 TATTTATTGTA
104771234 TAT
1 TAT
104771237 AAATATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:104771859 original size:21 final size:21
Alignment explanation
Indices: 104771820--104771859 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
104771810 TTTATTTAAA
*
104771820 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
104771841 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
104771860 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:104772003 original size:14 final size:14
Alignment explanation
Indices: 104771984--104772012 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
104771974 TAGATAAATA
104771984 ATAATCTATATAAC
1 ATAATCTATATAAC
104771998 ATAATCTATATAAC
1 ATAATCTATATAAC
104772012 A
1 A
104772013 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:104773724 original size:19 final size:19
Alignment explanation
Indices: 104773700--104773739 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
104773690 TTTTTTTTTT
* *
104773700 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
104773719 ATTAGAATAGAAAAGTATA
1 ATTAGAATAGAAAAGTATA
104773738 AT
1 AT
104773740 AAAAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:104775259 original size:16 final size:16
Alignment explanation
Indices: 104775238--104775270 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
104775228 TCTTATTCCT
*
104775238 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
104775254 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
104775270 T
1 T
104775271 AGAATACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:104780976 original size:14 final size:14
Alignment explanation
Indices: 104780957--104780985 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
104780947 ACAGATGGAT
104780957 TCGTATAATTCTTA
1 TCGTATAATTCTTA
104780971 TCGTATAATTCTTA
1 TCGTATAATTCTTA
104780985 T
1 T
104780986 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:104785218 original size:20 final size:21
Alignment explanation
Indices: 104785152--104785220 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
104785142 TCACTTCGTT
104785152 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
104785173 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
104785194 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
104785215 -CTTTTT
1 TCTTTTT
104785221 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:104787619 original size:18 final size:18
Alignment explanation
Indices: 104787586--104787679 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
104787576 AAGGTTTTCT
104787586 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
104787601 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
104787619 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
104787637 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
104787655 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
104787673 TATTGAT
1 TATTGAT
104787680 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:104807737 original size:17 final size:17
Alignment explanation
Indices: 104807715--104807750 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
104807705 GGGAAGATAG
104807715 AGAAAGAGAGACAAGAA
1 AGAAAGAGAGACAAGAA
* *
104807732 AGAAAGAGATACAGGAA
1 AGAAAGAGAGACAAGAA
104807749 AG
1 AG
104807751 CTAAGGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.31, T:0.03
Consensus pattern (17 bp):
AGAAAGAGAGACAAGAA
Found at i:104864073 original size:19 final size:19
Alignment explanation
Indices: 104864037--104864073 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
104864027 ATGCTATAGA
*
104864037 CATGCTATAGAGTAGTCAG
1 CATGCTATAGAGCAGTCAG
*
104864056 CATGCTATAGAGCGGTCA
1 CATGCTATAGAGCAGTCA
104864074 AAATCCCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (19 bp):
CATGCTATAGAGCAGTCAG
Found at i:104893085 original size:70 final size:71
Alignment explanation
Indices: 104892998--104893160 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
104892988 CGATTTGTCT
104892998 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
104893062 CTTTCA
66 CTTTCA
104893068 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
104893133 CTTTCA
66 CTTTCA
104893139 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
104893161 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 27 0.29
71 65 0.71
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:104893198 original size:71 final size:70
Alignment explanation
Indices: 104892998--104893194 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
104892988 CGATTTGTCT
* * *
104892998 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
104893062 CTTTCA
65 CTTTCA
* * * *
104893068 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
104893133 CTTTCA
65 CTTTCA
* *
104893139 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
104893195 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 26 0.22
71 69 0.58
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:104898223 original size:48 final size:48
Alignment explanation
Indices: 104898144--104898415 Score: 305
Period size: 48 Copynumber: 5.7 Consensus size: 48
104898134 TAGGGTTACG
** *
104898144 TGTGATCTCATGTAAGACCACGTCT-AGGACATGACATTGGCATCGATG
1 TGTGATCTCATGTAAGACCATATCTGA-GACATGACATTGGCATCGATA
* * * * * *
104898192 TGTTATCCCATGTAAAACCATGTCTGAGACATGGCATTGGCATTGATA
1 TGTGATCTCATGTAAGACCATATCTGAGACATGACATTGGCATCGATA
* * *
104898240 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATA
1 TGTGATCTCATGTAAGACCATATCTGAGACATGACATTGGCATCGATA
* * *
104898288 TGTGATCTCATGTAAGACCATATATGGGATATGACATTGGCATCGATA
1 TGTGATCTCATGTAAGACCATATCTGAGACATGACATTGGCATCGATA
* * * * *
104898336 TGTGATCTCATGTAAGACCACAT-TGGGATATGGCATTGGTATCGATA
1 TGTGATCTCATGTAAGACCATATCTGAGACATGACATTGGCATCGATA
* * * *
104898383 TGTGATTTCGTGTAAGACCATGTCTGGGACATG
1 TGTGATCTCATGTAAGACCATATCTGAGACATG
104898416 GCATCGATTT
Statistics
Matches: 198, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
47 41 0.21
48 156 0.79
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCTCATGTAAGACCATATCTGAGACATGACATTGGCATCGATA
Found at i:104898308 original size:96 final size:96
Alignment explanation
Indices: 104898144--104898419 Score: 374
Period size: 96 Copynumber: 2.9 Consensus size: 96
104898134 TAGGGTTACG
* * * * * * *
104898144 TGTGATCTCATGTAAGACCACGTCTAGGACATGACATTGGCATCGATGTGTTATCCCATGTAAAA
1 TGTGATCTCATGTAAGACCACATCTGGGACATGGCATTGGCATCGATATGTGATCTCATGTAAGA
* *
104898209 CCATGTCTGAGACATGGCATTGGCATTGATA
66 CCATGTCTGGGACATGGCATTGGCATCGATA
* *
104898240 TGTGATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGTGATCTCATGTAAGA
1 TGTGATCTCATGTAAGACCACATCTGGGACATGGCATTGGCATCGATATGTGATCTCATGTAAGA
* * * *
104898305 CCATATATGGGATATGACATTGGCATCGATA
66 CCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
104898336 TGTGATCTCATGTAAGACCACAT-TGGGATATGGCATTGGTATCGATATGTGATTTCGTGTAAGA
1 TGTGATCTCATGTAAGACCACATCTGGGACATGGCATTGGCATCGATATGTGATCTCATGTAAGA
104898400 CCATGTCTGGGACATGGCAT
66 CCATGTCTGGGACATGGCAT
104898420 CGATTTGAGA
Statistics
Matches: 155, Mismatches: 25, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
95 53 0.34
96 102 0.66
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (96 bp):
TGTGATCTCATGTAAGACCACATCTGGGACATGGCATTGGCATCGATATGTGATCTCATGTAAGA
CCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:104901171 original size:37 final size:37
Alignment explanation
Indices: 104901118--104901208 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
104901108 TATAAAAGAA
104901118 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
104901155 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
104901192 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
104901209 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:104901359 original size:49 final size:49
Alignment explanation
Indices: 104901304--104901607 Score: 482
Period size: 49 Copynumber: 6.4 Consensus size: 49
104901294 TTTTACATTA
104901304 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104901353 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104901402 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104901442 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
104901491 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
104901540 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
104901589 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
104901608 CACATATGTA
Statistics
Matches: 238, Mismatches: 8, Indels: 18
0.90 0.03 0.07
Matches are distributed among these distances:
40 37 0.16
41 1 0.00
42 1 0.00
43 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 195 0.82
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:104901421 original size:89 final size:89
Alignment explanation
Indices: 104901325--104901602 Score: 430
Period size: 89 Copynumber: 3.0 Consensus size: 89
104901315 TTATCACATA
104901325 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
104901390 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
104901414 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
104901479 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
*
104901503 CATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATAC
1 --T-AC--AT--A--CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATAC
* * * *
104901568 ACTTTCACATTCATCGCATTGGCCATTCGGCCT
57 ACTTTCACATTCACCACATCGGCCATTAGGCCT
104901601 TA
1 TA
104901603 TCACACACAT
Statistics
Matches: 175, Mismatches: 5, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
89 89 0.51
91 1 0.01
92 2 0.01
94 2 0.01
95 1 0.01
96 2 0.01
98 78 0.45
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (89 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCT
Found at i:104901552 original size:138 final size:138
Alignment explanation
Indices: 104901304--104901553 Score: 473
Period size: 138 Copynumber: 1.8 Consensus size: 138
104901294 TTTTACATTA
*
104901304 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
104901369 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
104901434 CCACATCG
131 CCACATCG
104901442 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* *
104901507 ACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTA
104901554 TCACATATAC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
138 109 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (138 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCA
CCACATCG
Found at i:104905018 original size:29 final size:29
Alignment explanation
Indices: 104904982--104905174 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
104904972 TGTTGAAAAA
*
104904982 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
104905011 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
104905040 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
104905069 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
104905098 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
104905127 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
104905156 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
104905175 TATTCATTCG
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:104905473 original size:78 final size:79
Alignment explanation
Indices: 104905347--104905528 Score: 267
Period size: 78 Copynumber: 2.3 Consensus size: 79
104905337 CGAATACACG
* *
104905347 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTC-GGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
*
104905412 CTTTGCCCGGATACA
65 CTTAGCCCGGATACA
* ** *
104905427 TCACTAGCACGAATGCTCTTCGGA-CTTTCCCGGATACATCACTAGCATGAATGCTCTTCGGAAC
1 TCACTAGCATGAATGCTCTTCGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
104905491 TTAGTCCGGATATA
66 TTAGCCCGGATACA
104905505 TCACTAGCATGAATGCTCTTCGGA
1 TCACTAGCATGAATGCTCTTCGGA
104905529 ACTTAGTCTG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 70 0.76
79 3 0.03
80 19 0.21
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (79 bp):
TCACTAGCATGAATGCTCTTCGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
TTAGCCCGGATACA
Found at i:104905528 original size:40 final size:40
Alignment explanation
Indices: 104905347--104905549 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
104905337 CGAATACACG
* * * *
104905347 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
* * * *
104905387 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
*
104905427 TCACTAGCACGAATGCTCTTCGG-ACTT--TCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGT-CCGGATACA
*
104905465 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
104905505 TCACTAGCATGAATGCTCTTCGGAACTTAGTCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
104905545 TCACT
1 TCACT
104905550 CTCAATTCTC
Statistics
Matches: 151, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
38 31 0.21
39 8 0.05
40 111 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACA
Found at i:104907420 original size:37 final size:37
Alignment explanation
Indices: 104907367--104907457 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
104907357 TATAAAAGAA
104907367 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
104907404 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
104907441 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
104907458 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:104907591 original size:40 final size:42
Alignment explanation
Indices: 104907553--104907818 Score: 185
Period size: 40 Copynumber: 6.0 Consensus size: 42
104907543 TTTTACATTA
104907553 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCAC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCAC
* *
104907595 -CACA-TCGGCCATTAGGC-C-T-TACATACACTTTCACATTCAC
1 GC-CATTAGGCC-TTA-TCACATATACATACACTTTCACATTCAC
* *
104907635 -CACA-TCGGCCATTAGGC-C-T-TACATACACTTTCACATTCACCACATC
1 GC-CATTAGGCC-TTA-TCACATATACATACACTTTCACATT-----CA-C
104907681 GGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATC
1 -GCCATTAGGCCTTATCACATATACATACACTTTCACATT-----CA-C
104907730 GGCCATTAGGCCTTATCACATATACATAC-CTTTCACATTCACACATC
1 -GCCATTAGGCCTTATCACATATACATACACTTTCACATT----CA-C
104907777 GGCCATTAGGCCTTATCACATATACATACACTTTCACATTCA
1 -GCCATTAGGCCTTATCACATATACATACACTTTCACATTCA
104907819 TCGCATTGGC
Statistics
Matches: 202, Mismatches: 6, Indels: 30
0.85 0.03 0.13
Matches are distributed among these distances:
40 58 0.29
41 7 0.03
42 6 0.03
43 1 0.00
44 2 0.01
45 2 0.01
46 2 0.01
47 41 0.20
48 27 0.13
49 56 0.28
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (42 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCAC
Found at i:104907608 original size:49 final size:49
Alignment explanation
Indices: 104907553--104907845 Score: 410
Period size: 49 Copynumber: 6.4 Consensus size: 49
104907543 TTTTACATTA
104907553 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104907602 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104907642 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104907682 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
104907731 GCCATTAGGCCTTATCACATATACATAC-CTTTCACATTCA-CACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
104907778 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
104907827 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
104907846 CACATATGTA
Statistics
Matches: 230, Mismatches: 3, Indels: 22
0.90 0.01 0.09
Matches are distributed among these distances:
40 77 0.33
41 1 0.00
42 1 0.00
43 1 0.00
46 1 0.00
47 36 0.16
48 25 0.11
49 88 0.38
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:104907660 original size:80 final size:82
Alignment explanation
Indices: 104907572--104907791 Score: 284
Period size: 89 Copynumber: 2.5 Consensus size: 82
104907562 CCTTATCACA
104907572 TATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCACCA
1 TATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCACCA
104907637 CATCGGCCATTAGGCC-
66 CATCGGCCATTAGGCCT
104907653 T-TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCA
1 TATACATACACTTTCACATTCACCACATCGGCCATTAGG------C-C-T-TACATACACTTTCA
104907717 CATTCACCACATCGGCCATTAGGCCT
57 CATTCACCACATCGGCCATTAGGCCT
104907743 TATCACATATACATACCTTTCACATTCA-CACATCGGCCATTAGGCCTTA
1 TAT-AC--ATAC--A-CTTTCACATTCACCACATCGGCCATTAGGCCTTA
104907792 TCACATATAC
Statistics
Matches: 122, Mismatches: 0, Indels: 28
0.81 0.00 0.19
Matches are distributed among these distances:
80 37 0.30
81 1 0.01
86 1 0.01
87 3 0.02
88 2 0.02
89 40 0.33
90 2 0.02
91 1 0.01
92 2 0.02
94 4 0.03
96 17 0.14
97 12 0.10
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (82 bp):
TATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTACATACACTTTCACATTCACCA
CATCGGCCATTAGGCCT
Found at i:104907812 original size:96 final size:98
Alignment explanation
Indices: 104907654--104907845 Score: 334
Period size: 96 Copynumber: 2.0 Consensus size: 98
104907644 CATTAGGCCT
104907654 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
104907719 TTCACCACATCGGCCATTAGGCCTTATCACATA
66 TTCACCACATCGGCCATTAGGCCTTATCACATA
104907752 TACATAC-CTTTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
* * * *
104907815 TTCATCGCATTGGCCATTCGGCCTTATCACA
66 TTCACCACATCGGCCATTAGGCCTTATCACA
104907846 CACATATGTA
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
96 71 0.79
97 12 0.13
98 7 0.08
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (98 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCTTATCACATA
Found at i:104910742 original size:19 final size:19
Alignment explanation
Indices: 104910718--104910754 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
104910708 GAAAAAAATT
*
104910718 TAAAAGTAAAAACAATATA
1 TAAAAGAAAAAACAATATA
*
104910737 TAAAAGAAAAAATAATAT
1 TAAAAGAAAAAACAATAT
104910755 TTTTTGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (19 bp):
TAAAAGAAAAAACAATATA
Found at i:104917008 original size:24 final size:24
Alignment explanation
Indices: 104916981--104917029 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
104916971 AGTATGATTA
104916981 TTATGTCTTATATGCAGTAATTCT
1 TTATGTCTTATATGCAGTAATTCT
104917005 TTATGTCTTATATGCAGTAATTCT
1 TTATGTCTTATATGCAGTAATTCT
104917029 T
1 T
104917030 AACTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.51
Consensus pattern (24 bp):
TTATGTCTTATATGCAGTAATTCT
Found at i:104925760 original size:51 final size:51
Alignment explanation
Indices: 104925684--104925802 Score: 184
Period size: 51 Copynumber: 2.3 Consensus size: 51
104925674 CTCAAACTTA
* *
104925684 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * *
104925735 CTTCATATTTCATCCGGAATAATTACTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
*
104925786 CTTCATATTTTATCCGG
1 CTTCATATTTCATCCGG
104925803 GTAACTTAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39
Consensus pattern (51 bp):
CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:104938754 original size:46 final size:46
Alignment explanation
Indices: 104938687--104938815 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
104938677 TGTAACCCGC
* * *
104938687 CCATAAGCGAACTCAGG-CTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTC-GGACTCAACTCAACGAGCTCGGACATTCGCAT
104938733 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
104938779 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
104938816 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:104946443 original size:46 final size:46
Alignment explanation
Indices: 104946267--104946443 Score: 157
Period size: 46 Copynumber: 3.8 Consensus size: 46
104946257 ATGTAACCCG
* * * *
104946267 TCCATAAGCGAACTTGGACTCAACCCAACAAGCTCAGG-CGTTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCA
* * * *
104946313 TACATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCA
* *
104946363 T-C-TCA-CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCA
* *
104946406 TCCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
104946444 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 56 0.54
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCA
Found at i:104948359 original size:6 final size:6
Alignment explanation
Indices: 104948350--104948402 Score: 70
Period size: 6 Copynumber: 8.3 Consensus size: 6
104948340 TAAGTCTAAG
*
104948350 AAATAA AAATAAA ACAATGAA AAATAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAAT-AA A-AAT-AA AAATAA AAATAA AAATAA AAATAA AAATAA
104948401 AA
1 AA
104948403 CTGAAAAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
6 30 0.71
7 6 0.14
8 6 0.14
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:104948386 original size:12 final size:12
Alignment explanation
Indices: 104948353--104948414 Score: 70
Period size: 12 Copynumber: 4.9 Consensus size: 12
104948343 GTCTAAGAAA
104948353 TAAAAATAAAAC
1 TAAAAATAAAAC
104948365 AATGAAAAATAAAAC
1 --T-AAAAATAAAAC
*
104948380 TAAAAATAAAAA
1 TAAAAATAAAAC
104948392 TAAAAATAAAAC
1 TAAAAATAAAAC
* *
104948404 TGAAAAGAAAA
1 TAAAAATAAAA
104948415 GAAATTAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
12 30 0.70
13 1 0.02
14 1 0.02
15 11 0.26
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (12 bp):
TAAAAATAAAAC
Found at i:104948401 original size:24 final size:25
Alignment explanation
Indices: 104948353--104948414 Score: 81
Period size: 24 Copynumber: 2.4 Consensus size: 25
104948343 GTCTAAGAAA
104948353 TAAAAATAAAACAATGAAAAATAAAAC
1 TAAAAAT-AAA-AATGAAAAATAAAAC
104948380 TAAAAATAAAAAT-AAAAATAAAAC
1 TAAAAATAAAAATGAAAAATAAAAC
* *
104948404 TGAAAAGAAAA
1 TAAAAATAAAA
104948415 GAAATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 20 0.61
25 3 0.09
26 3 0.09
27 7 0.21
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.15
Consensus pattern (25 bp):
TAAAAATAAAAATGAAAAATAAAAC
Found at i:104960471 original size:480 final size:480
Alignment explanation
Indices: 104959533--104960493 Score: 1289
Period size: 480 Copynumber: 2.0 Consensus size: 480
104959523 CTTGCTATGT
* * *
104959533 CTGTAACATCCCAAAATAGGGCCTAGTCGGAATAGTGGTTTCAGGACCACAAATCTGATATCATA
1 CTGTAACATCCCAAAATAGGGCCTAGTCGGAATAGTAGTTTCAGGACCACAAATCTGACATCAAA
* * * * *
104959598 ATAATAATTTTTTTATTATTATGAGGCCTAGAATATAAGAACATGTATGTGTTAAAGTTTCATAA
66 ATAATAACTTTATGATTATTATGAGGCCTAGAATATAAGAACATGCACGTGTTAAAGTTTCATAA
*
104959663 AGAAATTCTTTGAGTAAGGTGTCCAATTGGAAATTAGAGACTAAATTGAATAAAATTTAAAACTT
131 AGAAATTCTTTGAGTAAGGTGTCCAATTGGAAATTAGAGACTAAATTGAATAAAATTCAAAACTT
* * *
104959728 TAATTCTAGAATAAATTTGTATGAAATTACTTTAGATTATAAATTAGAAGGTCTTGGAGAGCAAT
196 GAATTCTAGAAGAAATTTGTATGAAATTACTTTAGATTATAAATTAGAAGGTATTGGAGAGCAAT
* *
104959793 TTGCCCAATTTCTAAGTTTTTGGACAAAAATGGGTTTGCATGAATGAAATTTTAAAGAAAAAGCT
261 TTGCCCAAATTCTAAGTTTTTGGACAAAAATGGGCTTGCATGAATGAAATTTTAAAGAAAAAGCT
*
104959858 TAAGGGCATTTTGGTCATTCGGTATTTTAATGAAATAAATTGAGAAAAAGAAAGCCAAAATCAGC
326 TAAGGGCATTTTGGTCATTCGGTATTTTAATGAAATAAATAGAGAAAAAGAAAGCCAAAATCAGC
* ** * * * *
104959923 CATCTTCTTTCCCATAGCTGCTGAAATTCCTAGAGCTCCATAAGCTAGGGTTTTCCACATTTCAA
391 CATCTTCTTTCCCATAGCGGCCAAAATTCCAAGAGCTCCATAAGCTAAGGTTTTCAACATTCCAA
104959988 GCTCAATAGTAAGTGCTCCCAAGCC
456 GCTCAATAGTAAGTGCTCCCAAGCC
** * *
104960013 CTGTAACATCCTGAAATAGGGCCTAGTCGGAAT-GCTAGTTTCGGGATCACAAATCTGACATCAA
1 CTGTAACATCCCAAAATAGGGCCTAGTCGGAATAG-TAGTTTCAGGACCACAAATCTGACATCAA
* * * * *
104960077 AATATTTACTTTATGATTATTATGAGGCCTAGAATATGAGTATATGCACGTGTTAAAGTTTCATA
65 AATAATAACTTTATGATTATTATGAGGCCTAGAATATAAGAACATGCACGTGTTAAAGTTTCATA
* *
104960142 AAGAAATTCTTTGAGTAAGGTGTTCAATTGGAAATTAGGGACTAAATTGAAT-AAATTGCAAAAC
130 AAGAAATTCTTTGAGTAAGGTGTCCAATTGGAAATTAGAGACTAAATTGAATAAAATT-CAAAAC
* * * * *
104960206 TTGAATTCTAGAAGCAATTTGTATGAAATTTCTTTGGGTTATGAATTAGAAGGTATTGGAGAGCA
194 TTGAATTCTAGAAGAAATTTGTATGAAATTACTTTAGATTATAAATTAGAAGGTATTGGAGAGCA
* * * **
104960271 ATTTGCCCAAATTCTAAGTTTTTGGACAAAAATGGGCTTGCATGGATGGAATTTTAAGGAAAGGG
259 ATTTGCCCAAATTCTAAGTTTTTGGACAAAAATGGGCTTGCATGAATGAAATTTTAAAGAAAAAG
*
104960336 CTTAAGGGCATTTTGGTCATTTGGTATTTTAATGAAATAAAATAG-GAAAAATG-AA-CCAAAAT
324 CTTAAGGGCATTTTGGTCATTCGGTATTTTAATGAAAT-AAATAGAGAAAAA-GAAAGCCAAAAT
* * * *
104960398 TAGCC--CATTCTCTT-CC-TTGTTCGGCCAAAACTT-CAAGGGTTTCCAT-AGCTAAGGTTTTC
387 CAGCCATC-TTCT-TTCCCATAG--CGGCCAAAA-TTCCAAGAG-CTCCATAAGCTAAGGTTTTC
*
104960457 AAGC-TATCCAAGCTCAATAGTAAGTGCTCTCAAGCC
446 AA-CAT-TCCAAGCTCAATAGTAAGTGCTCCCAAGCC
104960493 C
1 C
104960494 CATTTTTCAT
Statistics
Matches: 420, Mismatches: 49, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
477 3 0.01
478 6 0.01
479 43 0.10
480 362 0.86
481 6 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (480 bp):
CTGTAACATCCCAAAATAGGGCCTAGTCGGAATAGTAGTTTCAGGACCACAAATCTGACATCAAA
ATAATAACTTTATGATTATTATGAGGCCTAGAATATAAGAACATGCACGTGTTAAAGTTTCATAA
AGAAATTCTTTGAGTAAGGTGTCCAATTGGAAATTAGAGACTAAATTGAATAAAATTCAAAACTT
GAATTCTAGAAGAAATTTGTATGAAATTACTTTAGATTATAAATTAGAAGGTATTGGAGAGCAAT
TTGCCCAAATTCTAAGTTTTTGGACAAAAATGGGCTTGCATGAATGAAATTTTAAAGAAAAAGCT
TAAGGGCATTTTGGTCATTCGGTATTTTAATGAAATAAATAGAGAAAAAGAAAGCCAAAATCAGC
CATCTTCTTTCCCATAGCGGCCAAAATTCCAAGAGCTCCATAAGCTAAGGTTTTCAACATTCCAA
GCTCAATAGTAAGTGCTCCCAAGCC
Found at i:104967020 original size:40 final size:40
Alignment explanation
Indices: 104966975--104967140 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
104966965 CGGAATATAA
104966975 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
104967015 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
104967055 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
104967095 CCGGATATAATTC-C-AGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA-TCACTAGCACAAATGCCTTCGGGTCTTAGC
104967133 CCGGATAT
1 CCGGATAT
104967141 CATTCAATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
38 13 0.12
39 17 0.16
40 77 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:104975014 original size:40 final size:40
Alignment explanation
Indices: 104974969--104975135 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
104974959 CGGAATATAA
104974969 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
104975009 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
104975049 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
104975089 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
104975128 CCGGATAT
1 CCGGATAT
104975136 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:104987244 original size:10 final size:11
Alignment explanation
Indices: 104987200--104987247 Score: 60
Period size: 11 Copynumber: 4.1 Consensus size: 11
104987190 CCAAAAATTC
104987200 TAGAAAAAAAT
1 TAGAAAAAAAT
*
104987211 TAGTAAACATTAAT
1 TAG-AAA-A-AAAT
104987225 TAGAAAAAAAT
1 TAGAAAAAAAT
104987236 TAGAAAAAAAT
1 TAGAAAAAAAT
104987247 T
1 T
104987248 TTACGGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 18 0.56
12 4 0.12
13 4 0.12
14 6 0.19
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (11 bp):
TAGAAAAAAAT
Found at i:104993761 original size:47 final size:46
Alignment explanation
Indices: 104993690--104993960 Score: 171
Period size: 47 Copynumber: 5.8 Consensus size: 46
104993680 GTAAGGGGCT
* * *
104993690 GATGCCATATCCCAGACAAGGTCTTACACTAGCACTCATCTCGTGTC
1 GATGCCATGTCCCAGAC-ATGTCTTACACTAGCACTCATCTCGTGCC
104993737 GATGCCATGTCCCAGACATTGTCTTACA-TAG-ACTATCATCTCGTAGCC
1 GATGCCATGTCCCAGACA-TGTCTTACACTAGCAC--TCATCTCGT-GCC
* * * * * * * *
104993785 GATG-CATATCCTAGACATGTCTTACACTGGC-TTACATTTTGAGGCT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCACT-CATCTCG-TGCC
* * * *
104993831 AATG-CATGTCCC-GAGCATGTCTTACACTAGCCCTCGTCTTGATGCC
1 GATGCCATGTCCCAGA-CATGTCTTACACTAGCACTCATCTCG-TGCC
* * * * *
104993877 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATAGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGT-GCC
* * *
104993925 GATG-CATGTCCCAGGCATGTATTACACTAGCCCTCA
1 GATGCCATGTCCCAGACATGTCTTACACTAGCACTCA
104993961 ATAACCCATA
Statistics
Matches: 178, Mismatches: 31, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
45 5 0.03
46 70 0.39
47 72 0.40
48 30 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGTGCC
Found at i:104993930 original size:94 final size:92
Alignment explanation
Indices: 104993782--104993959 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 92
104993772 TCATCTCGTA
* *
104993782 GCCGATGCATATCCTAGACATGTCTTACACTGGCTTACATTTTGAGGCTAATGCATGTCCC-GAG
1 GCCGATGCATATCCCAGACATGTCTTACACTGGCTTACATTATGAGGCTAATGCATGTCCCAG-G
*
104993846 CATGTCTTACACTAGCCCTCGTCTTGAT
65 CATGTATTACACTAGCCCTCGTCTTGAT
* *
104993874 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATAT-A-GCTGATGCATGTCC
1 GCCGATG-CATATCCCAGACAT-GTCTTACACTGGCT-TACAT--TATGAGGCTAATGCATGTCC
104993936 CAGGCATGTATTACACTAGCCCTC
61 CAGGCATGTATTACACTAGCCCTC
104993960 AATAACCCAT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
92 7 0.09
93 12 0.16
94 51 0.68
95 3 0.04
96 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
GCCGATGCATATCCCAGACATGTCTTACACTGGCTTACATTATGAGGCTAATGCATGTCCCAGGC
ATGTATTACACTAGCCCTCGTCTTGAT
Found at i:105001828 original size:31 final size:31
Alignment explanation
Indices: 105001790--105001853 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
105001780 TTTGGTAAAA
105001790 TTATTTTATGCAAAATATTATTACTTTAAGG
1 TTATTTTATGCAAAATATTATTACTTTAAGG
*
105001821 TTATTTTATGCCAAATATTATTACTTTAAGG
1 TTATTTTATGCAAAATATTATTACTTTAAGG
105001852 TT
1 TT
105001854 TCTTTTAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.08, G:0.09, T:0.50
Consensus pattern (31 bp):
TTATTTTATGCAAAATATTATTACTTTAAGG
Found at i:105010739 original size:2 final size:2
Alignment explanation
Indices: 105010732--105010763 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
105010722 CGGCTCTAGC
105010732 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105010764 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105011623 original size:40 final size:40
Alignment explanation
Indices: 105011473--105011689 Score: 195
Period size: 39 Copynumber: 5.5 Consensus size: 40
105011463 TCGAATGGTG
* * * * * *
105011473 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
105011514 CCGAGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
105011554 CCGGGTTAAGTCCC-AAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
105011593 CTGGGTTAGGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * * *
105011633 TCGGGCTAATTCCC-AAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
105011672 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
105011690 ACAATCGAGC
Statistics
Matches: 143, Mismatches: 31, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 67 0.47
40 53 0.37
41 23 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:105011685 original size:79 final size:79
Alignment explanation
Indices: 105011524--105011703 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 79
105011514 CCGAGTCAAC
* * * * *
105011524 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCAAGGCATTTGTGCGAGTTACC
1 TCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCAAGGCAATTGTGCGAATCACC
* *
105011589 AAAACTGGGTTAGG
66 AAAACCGGGCTAGG
* ** * *
105011603 TCCCGAAGGCATTCGTGCGAGTTACTAAATTCGGGCTAATTCCCAAGGCAATTGTGCGAATCACT
1 TCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCAAGGCAATTGTGCGAATCACC
* *
105011668 ATAACCGGGCTATG
66 AAAACCGGGCTAGG
* * *
105011682 TCCCGAAGACAATCGAGCGAGT
1 TCCCGAAGGCATTCGTGCGAGT
105011704 CGCTATATCC
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
79 84 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (79 bp):
TCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCAAGGCAATTGTGCGAATCACC
AAAACCGGGCTAGG
Found at i:105018646 original size:40 final size:40
Alignment explanation
Indices: 105018550--105018740 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
105018540 CGAATGGTGT
* * * * * *
105018550 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
105018591 CCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
105018631 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
105018671 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
105018711 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
105018741 ATCACTATAA
Statistics
Matches: 133, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 109 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:105018755 original size:40 final size:39
Alignment explanation
Indices: 105018550--105018764 Score: 234
Period size: 40 Copynumber: 5.4 Consensus size: 39
105018540 CGAATGGTGT
* * *
105018550 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
105018590 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
* *
105018631 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
* *
105018671 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
105018710 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
105018751 CCGGGCTATGTCCC
1 CCGGGCTAAGTCCC
105018765 AAAGACAATC
Statistics
Matches: 153, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 4 0.03
40 118 0.77
41 31 0.20
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:105018781 original size:120 final size:121
Alignment explanation
Indices: 105018550--105018782 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 121
105018540 CGAATGGTGT
* * *
105018550 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* * * * * * * *
105018615 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGTTACCAAAA
* * * *
105018671 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAAT
* * *
105018734 TGTGCGAATCACTATAACCGGGCTATGTCCCAAAGACAATCGAGCGAGT
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGT
105018783 CGTTATATCC
Statistics
Matches: 93, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
119 1 0.01
120 67 0.72
121 25 0.27
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCAAAGACAATCGAGCGAGTTACCAAAA
Found at i:105029712 original size:43 final size:43
Alignment explanation
Indices: 105029555--105029713 Score: 132
Period size: 42 Copynumber: 3.7 Consensus size: 43
105029545 TATGTGATTT
* *
105029555 CGTGTAAGACCACGTCT-GAAGTGTTGGCATCG-ATTTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACTGTTGGCATCGTATTTG-G--TTA
* * * * * *
105029599 CGTGTAAGACCATGTGTGGGAC-ATTGGCATCGTATATGATTT
1 CGTGTAAGACCACGTCTGGGACTGTTGGCATCGTATTTGGTTA
* *
105029641 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGGTAA
1 CGTGTAAGACCAC-GTCTGGGACTGTTGGCATCG-TATTTGGTTA
*
105029684 CATGTAAGACCACGTCTGGGA-TGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACTGTTGGCAT
105029714 TGTACGAGTT
Statistics
Matches: 91, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
42 30 0.33
43 30 0.33
44 25 0.27
45 6 0.07
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACTGTTGGCATCGTATTTGGTTA
Found at i:105035338 original size:968 final size:968
Alignment explanation
Indices: 105033463--105035374 Score: 3279
Period size: 968 Copynumber: 2.0 Consensus size: 968
105033453 TACCAATTGC
* *
105033463 ATTTGGCTTACTAAGCTCTTTGTAGCTTAGTCTGTATGTTTACTGTCTGTTTTACAGTTATCGTA
1 ATTTGGCTTACTAAGCTCTTTGTAGCTTAGTCTGTATGTTTACTATCTATTTTACAGTTATCGTA
* *
105033528 GCTACTAAAGGCTCGGGGATAGTCGAGGATTGTCACCACACTATCGATCTCATTTTGGTACTTTT
66 GCTACTAAAGGCTCGGGGATAGTCAAGGATCGTCACCACACTATCGATCTCATTTTGGTACTTTT
*
105033593 GAAAGTGTACATATTTTAAAGTATGGCATGTATAGGCTAGAAGGTCTATGTGTATAAGTTTTGAT
131 GAAAGTGTACATATTTTAAAGTATGGCATGTATAGGCTAGAAGGTCTATGTATATAAGTTTTGAT
*
105033658 GTGTATATATTATGCCATAGGAGTTGGCTAGCAAATGAAATGTTGTATATAGTTTTGGTATTTGG
196 GTGTATATATTATGCCATAGGAGTTGGATAGCAAATGAAATGTTGTATATAGTTTTGGTATTTGG
* *
105033723 TTGATGGTGCCAAATGATGTATGGCTGTAGTGTTTTATGAGCTAATATGTTTTGGTTATAATGAA
261 TTAATGGTGCCAAATGATGTATGGCTGTAGTGTTTTATGAGCTAAGATGTTTTGGTTATAATGAA
105033788 GCATGTTTTGAGCATGGAATTGGTTGGAAATTTCGTATGAATGTGGTATATTATTACTTGTAGGA
326 GCATGTTTTGAGCATGGAATTGGTTGGAAATTTCGTATGAATGTGGTATATTATTACTTGTAGGA
* *
105033853 TTGGACCCAAAATGGGGTGGCAAATTTGGCTTAAACCAAGCCTGCTTGGTGCTACACGGTCAGGG
391 TTGGACCCAAAATGGGGTGGCAAATTTGGCTTAAACCAAGCCTGCTTGGTGCCACACGATCAGGG
* * * ** * *
105033918 GAGACGGGCGTGCCTTGTGGCTGTGTAAGAAAAGTAGTATTCTCCTAAGAACCACACGGTTTTGA
456 GACACAGGCGTGCCTTCTGGCCATGTAAGAAAAGCAGTATTCTCCTAAGAACCACACGGTCTTGA
* * **
105033983 CACACGGGCATGTCATATGGCTGTGGGCTAAAGTCAGTAGCTAGCTAAATATCACATGGCCATAG
521 CACACGGGCATGCCATATGGCTGTGGGCTAAAGTCAATAGCTAGCTAAATATCACACAGCCATAG
* * *
105034048 TACACGGGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTATAGGACCTATTTTTGGCACAACTGGT
586 TACACGAGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTATAAGACCTATTTTTGGCACAACCGGT
** *
105034113 TCACATGGGCGTGTCTAGTGCCCGTGTGTATCACACGGCCTAGTTTCACGGGCGTGTGACTTTAA
651 TCACATGGGCGTGTCTAGTGCCCGTGTGTATCACACGGCCTAGTCACACGGGCATGTGACTTTAA
**
105034178 CAGTTTGAAAGAATTGGTTAAGTTCTGAAAATTTTGAATAAGTTCAGTTTAGTTTTGACTTTTCT
716 CAGTTTGAAAGAATTGGTTAAGTTCTGAAAATTTTGAATAAGTTCAGTTTAGTTCCGACTTTTCT
* *
105034243 TTAAATGTATATTTTAGGTCTTGTAGACCATAATTAGAGATGATTGTTTATGAAGTGATGTTAAA
781 TTAAATGTATATTTTAGGTCTTATAGACCATAATTAGAGATGATTGTTTATGAAATGATGTTAAA
* * * *
105034308 TAGTATTTGTGGTTCTGAATTGGTTCGAAATGTTCTGTCTATCTGGTAATGCCTATTAACCCTAA
846 TAGTATCTGTGATTCTGAATTGGTTCAAAATGTTCTATCTATCTGGTAATGCCTATTAACCCTAA
*
105034373 TCCGATGTCAGTTACGGGTTAGGGGTGTTACATTATAGGTTATGTAAATATGTACAGT
911 TCCGATGTCAGTTACGGGTTAGGAGTGTTACATTATAGGTTATGTAAATATGTACAGT
* * * *
105034431 ATTTGGCTTACTAAGCTCTTTGTAGCTTATTTTGTGTGTTTACTATCTATTTTACAGTTATTGTA
1 ATTTGGCTTACTAAGCTCTTTGTAGCTTAGTCTGTATGTTTACTATCTATTTTACAGTTATCGTA
* * *
105034496 GCTACTAAAGGCTTGGGGATAGTCAAGTATCGTCACCACACTATCGATTTCATTTTGGTACTTTT
66 GCTACTAAAGGCTCGGGGATAGTCAAGGATCGTCACCACACTATCGATCTCATTTTGGTACTTTT
105034561 GAAAGTGTACATATTTTAAAGTATGGCATGTATAGGCTAGAAGGTCTATGTATATAAGTTTTGAT
131 GAAAGTGTACATATTTTAAAGTATGGCATGTATAGGCTAGAAGGTCTATGTATATAAGTTTTGAT
105034626 GTGTATATATTATGCCATAGGAGTTGGATAGCAAATGAAATGTTGTATATAGTTTTGGTATTTGG
196 GTGTATATATTATGCCATAGGAGTTGGATAGCAAATGAAATGTTGTATATAGTTTTGGTATTTGG
* *
105034691 TTAATGGTGCCAAATGATGTATGGTTGTAGTGTTTTATTAGCTAAGATG-TTTGTGTTATAATGA
261 TTAATGGTGCCAAATGATGTATGGCTGTAGTGTTTTATGAGCTAAGATGTTTTG-GTTATAATGA
*
105034755 AGCATGTTTTGAGCATGGAATTGGTTGGAAATTTCGTATGAATGTGGTATATTATTGCTTGTAGG
325 AGCATGTTTTGAGCATGGAATTGGTTGGAAATTTCGTATGAATGTGGTATATTATTACTTGTAGG
105034820 ATTGGACCCAAAATGGGGTGGCAAATTTGGCTTAAACCAAGCCTGCTTGGTGCCACACGATCAGG
390 ATTGGACCCAAAATGGGGTGGCAAATTTGGCTTAAACCAAGCCTGCTTGGTGCCACACGATCAGG
*
105034885 GGTCACAGGCGTGCCTTCTGGCCATGTAAGAAAAGCAGTATTCTCCTAAGAACCACACGGTCTTG
455 GGACACAGGCGTGCCTTCTGGCCATGTAAGAAAAGCAGTATTCTCCTAAGAACCACACGGTCTTG
* * *
105034950 ACACGCGGGCGTGCCATATGGCTGTGGGCTAAAGTCAATAGCTAGCTAAGTATCACACAGCCATA
520 ACACACGGGCATGCCATATGGCTGTGGGCTAAAGTCAATAGCTAGCTAAATATCACACAGCCATA
*
105035015 GTACACGAGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTATAAGACCTATTTTTGGCACGACCGG
585 GTACACGAGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTATAAGACCTATTTTTGGCACAACCGG
105035080 TTCACATGGGCGTGTCTAGTGCCCGTGTGTATCACACGGCCTAGTCACACGGGCATGTGACTTTA
650 TTCACATGGGCGTGTCTAGTGCCCGTGTGTATCACACGGCCTAGTCACACGGGCATGTGACTTTA
* *
105035145 ACAGTTTGAAAGAATTGGTTAAGTTTTGAAAATTTTGAATAAGTTCGGTTTAGTTCCGACTTTTC
715 ACAGTTTGAAAGAATTGGTTAAGTTCTGAAAATTTTGAATAAGTTCAGTTTAGTTCCGACTTTTC
105035210 TTTAAATGTATATTTTAGGTCTTATAGACCATAATTAGAGATGATTGTTTATGAAATGATGTTAA
780 TTTAAATGTATATTTTAGGTCTTATAGACCATAATTAGAGATGATTGTTTATGAAATGATGTTAA
* *
105035275 ATAGTATCTGTGATTCTGAATTGGTTCAAAATGTTCTATCTGTCTGGTAATGTCTCA-TAACCCT
845 ATAGTATCTGTGATTCTGAATTGGTTCAAAATGTTCTATCTATCTGGTAATGCCT-ATTAACCCT
* *
105035339 AATCTGATGTCGGTTACGGGTTAGGAGTGTTACATT
909 AATCCGATGTCAGTTACGGGTTAGGAGTGTTACATT
105035375 TTATTGGTAT
Statistics
Matches: 885, Mismatches: 57, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
967 4 0.00
968 880 0.99
969 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (968 bp):
ATTTGGCTTACTAAGCTCTTTGTAGCTTAGTCTGTATGTTTACTATCTATTTTACAGTTATCGTA
GCTACTAAAGGCTCGGGGATAGTCAAGGATCGTCACCACACTATCGATCTCATTTTGGTACTTTT
GAAAGTGTACATATTTTAAAGTATGGCATGTATAGGCTAGAAGGTCTATGTATATAAGTTTTGAT
GTGTATATATTATGCCATAGGAGTTGGATAGCAAATGAAATGTTGTATATAGTTTTGGTATTTGG
TTAATGGTGCCAAATGATGTATGGCTGTAGTGTTTTATGAGCTAAGATGTTTTGGTTATAATGAA
GCATGTTTTGAGCATGGAATTGGTTGGAAATTTCGTATGAATGTGGTATATTATTACTTGTAGGA
TTGGACCCAAAATGGGGTGGCAAATTTGGCTTAAACCAAGCCTGCTTGGTGCCACACGATCAGGG
GACACAGGCGTGCCTTCTGGCCATGTAAGAAAAGCAGTATTCTCCTAAGAACCACACGGTCTTGA
CACACGGGCATGCCATATGGCTGTGGGCTAAAGTCAATAGCTAGCTAAATATCACACAGCCATAG
TACACGAGCGTGCCTATTGGCCGTGTGAAAAAGTCAGTATAAGACCTATTTTTGGCACAACCGGT
TCACATGGGCGTGTCTAGTGCCCGTGTGTATCACACGGCCTAGTCACACGGGCATGTGACTTTAA
CAGTTTGAAAGAATTGGTTAAGTTCTGAAAATTTTGAATAAGTTCAGTTTAGTTCCGACTTTTCT
TTAAATGTATATTTTAGGTCTTATAGACCATAATTAGAGATGATTGTTTATGAAATGATGTTAAA
TAGTATCTGTGATTCTGAATTGGTTCAAAATGTTCTATCTATCTGGTAATGCCTATTAACCCTAA
TCCGATGTCAGTTACGGGTTAGGAGTGTTACATTATAGGTTATGTAAATATGTACAGT
Found at i:105041652 original size:55 final size:55
Alignment explanation
Indices: 105041568--105041684 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 55
105041558 ATGGGCCCAT
* * * *
105041568 GCCCGTGTTAATTTAACAGGTTCGACCACAGGTTCTAGACACGGGCGTGTCGCAC
1 GCCCGTGTTAATTTAACAGGTTCAACCACAAGTTCAAGACACAGGCGTGTCGCAC
* * *
105041623 GCCCGTGTTAATTTGACAGGTTCAACCACAAGTTCAAGGCACAGGCGTGTCGCAT
1 GCCCGTGTTAATTTAACAGGTTCAACCACAAGTTCAAGACACAGGCGTGTCGCAC
105041678 GCCCGTG
1 GCCCGTG
105041685 CTGTTTTGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (55 bp):
GCCCGTGTTAATTTAACAGGTTCAACCACAAGTTCAAGACACAGGCGTGTCGCAC
Found at i:105046276 original size:27 final size:27
Alignment explanation
Indices: 105046244--105046298 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
105046234 TAAGCAAGAG
*
105046244 AATGTACAGAGTCTGAAACTGAGCAAC
1 AATGTACAGAATCTGAAACTGAGCAAC
105046271 AATGTACAGAATCTGAAACTGAGCAAC
1 AATGTACAGAATCTGAAACTGAGCAAC
105046298 A
1 A
105046299 CCTCAGCTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (27 bp):
AATGTACAGAATCTGAAACTGAGCAAC
Found at i:105053226 original size:39 final size:39
Alignment explanation
Indices: 105053145--105053307 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
105053135 TATGGTAACC
* * *
105053145 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
105053185 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
105053224 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
105053263 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
105053302 CGCACA
1 CGCACA
105053308 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:105056134 original size:20 final size:19
Alignment explanation
Indices: 105056082--105056134 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
105056072 AAAAGGTTAG
*
105056082 ATTTTATTTTTATTTGTTTT
1 ATTTT-TTTTTATTTATTTT
105056102 -TCTTTTTGTTTATTTATTTT
1 AT-TTTTT-TTTATTTATTTT
105056122 ATTTTTTTATTAT
1 ATTTTTTT-TTAT
105056135 GAAAAAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
19 4 0.14
20 23 0.82
21 1 0.04
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (19 bp):
ATTTTTTTTTATTTATTTT
Found at i:105060004 original size:40 final size:40
Alignment explanation
Indices: 105059937--105060081 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
105059927 AAATTGAATG
* * * *
105059937 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * * ***
105059977 ATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
105060017 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
105060057 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
105060082 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:105060082 original size:40 final size:39
Alignment explanation
Indices: 105059976--105060104 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
105059966 TGCTGGAAAT
* * * *
105059976 TATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
105060016 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
105060056 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
105060096 TATATCCGG
1 TATATCCGG
105060105 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:105063182 original size:29 final size:29
Alignment explanation
Indices: 105063149--105063251 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
105063139 GTGACGAGAT
105063149 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
105063178 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
105063207 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
105063236 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
105063252 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:105078702 original size:28 final size:28
Alignment explanation
Indices: 105078662--105078718 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
105078652 TCAAGCTAAC
*
105078662 ATGAACTTAACCACATACTTGATCGTGA
1 ATGAACTTAACCACATACTTGATCATGA
105078690 ATGAACTTAACCACATACTTGATCATGA
1 ATGAACTTAACCACATACTTGATCATGA
105078718 A
1 A
105078719 CTCACAACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (28 bp):
ATGAACTTAACCACATACTTGATCATGA
Found at i:105078976 original size:48 final size:48
Alignment explanation
Indices: 105078854--105079327 Score: 578
Period size: 48 Copynumber: 9.9 Consensus size: 48
105078844 ACTCGAGAGT
* * * * * *
105078854 CTCGCACCCAAAGTGCCAATATCATGGCCAGAGGCCAACTC-AATTAT
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * * *
105078901 CTCGCATCCGAAGTGTCAATGTCATGGCCCGAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
105078949 CTCACACTCGAAGTGCCAATATCATGGCCCGAAACCAAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* *
105078997 TTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATA-TAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGTAA
* * * * * * *
105079045 CTTGTACCCGAACTGCCAATATCATGGCCTGAAACCAAATTAAAGAAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
*
105079093 CTCGCACCCGAAGTGCCAATAACATGGCCCGAAGCCAAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * * *
105079141 CTC-CTACTCAAAGTGCCAATATCATGACCCAAAGCCAAATCAAAGTAA
1 CTCGC-ACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
105079189 CTCGCACTCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* *
105079237 CTCGCACCTGAAGTGCCAATATCATGG-CCTAGAGCCAAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGA-AGCCAAATCAAAGTAA
* **
105079285 CTTGCACCCGAAGTGCCAATATCATGGCCCGAAGAAAAATCAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAA
105079328 TGTATTCTGT
Statistics
Matches: 364, Mismatches: 56, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
47 39 0.11
48 320 0.88
49 5 0.01
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
Found at i:105081601 original size:34 final size:34
Alignment explanation
Indices: 105081516--105081613 Score: 124
Period size: 34 Copynumber: 2.9 Consensus size: 34
105081506 GAGCGATAAT
* * **
105081516 TCTGGGCCTAAGCCCATATCAGTAACAACAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
*
105081550 TCTAGGCCTTAGCCCATTTCAGTAACAGTAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* * *
105081584 TCTGGGCTTTAGCCCATTTCAATAATAGTA
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTA
105081614 ATCAGCGCAG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:105082050 original size:27 final size:27
Alignment explanation
Indices: 105082005--105082118 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
105081995 AACAAATCTA
* * * *
105082005 TCATTTTACCTTACCGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTTCGG
*
105082032 TCATTTTACCCTACAGGGGTATTTTGG
1 TCATTTTACCCTACAGGGGTATTTCGG
* * ***
105082059 TCATTCTACCTTGTGGGGGTATTTCGG
1 TCATTTTACCCTACAGGGGTATTTCGG
* * *
105082086 TCATTTTACCCTATAAGGGTATTTTGG
1 TCATTTTACCCTACAGGGGTATTTCGG
105082113 TCATTT
1 TCATTT
105082119 GATCACATAA
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGG
Found at i:105082069 original size:54 final size:54
Alignment explanation
Indices: 105082005--105082117 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
105081995 AACAAATCTA
* *
105082005 TCATTTTACCTTACCGGGGTATTACAGTCATTTTACCCTACAGGGGTATTTTGG
1 TCATTCTACCTTACCGGGGTATTACAGTCATTTTACCCTACAAGGGTATTTTGG
*** * * *
105082059 TCATTCTACCTTGTGGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTTGG
1 TCATTCTACCTTACCGGGGTATTACAGTCATTTTACCCTACAAGGGTATTTTGG
105082113 TCATT
1 TCATT
105082118 TGATCACATA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.42
Consensus pattern (54 bp):
TCATTCTACCTTACCGGGGTATTACAGTCATTTTACCCTACAAGGGTATTTTGG
Found at i:105082128 original size:27 final size:27
Alignment explanation
Indices: 105082075--105082131 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
105082065 TACCTTGTGG
* *
105082075 GGGTATTTCGGTCATTTTACCCTATAA
1 GGGTATTTCGGTCATTTGACACTATAA
*
105082102 GGGTATTTTGGTCATTTGATCAC-ATAA
1 GGGTATTTCGGTCATTTGA-CACTATAA
105082129 GGG
1 GGG
105082132 CAAAATCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTGACACTATAA
Found at i:105082143 original size:27 final size:27
Alignment explanation
Indices: 105082113--105082294 Score: 220
Period size: 27 Copynumber: 6.7 Consensus size: 27
105082103 GGTATTTTGG
* * *
105082113 TCATTTGATCACATAAGGGCAAAATCT
1 TCATTTTATCACATAAGGGTAAAATCA
***
105082140 TCATTTTATCACATAAGCACAAAATCA
1 TCATTTTATCACATAAGGGTAAAATCA
* *
105082167 TCATTTTATCACGTAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCA
* * *
105082194 TTATTTTACCACATAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCA
** *
105082221 TCATTTTATCACGCAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCA
*
105082248 TCATTTTATTACATAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGTAAAATCA
*
105082275 TCATTTTATCACATGAGGGT
1 TCATTTTATCACATAAGGGT
105082295 TCAGGTACGC
Statistics
Matches: 133, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGTAAAATCA
Found at i:105084351 original size:6 final size:6
Alignment explanation
Indices: 105084321--105084408 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
105084311 AAGAAACATT
* * * *
105084321 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
105084370 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
105084409 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
5 4 0.06
6 50 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:105084376 original size:25 final size:25
Alignment explanation
Indices: 105084342--105084408 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
105084332 AATCAAAATG
* *
105084342 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
105084367 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
105084392 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
105084409 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:105084541 original size:26 final size:26
Alignment explanation
Indices: 105084522--105084595 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
105084512 TTGTAACATG
105084522 GCTACCAGAACAGATATTGTGACAGA
1 GCTACCAGAACAGATATTGTGACAGA
* * *
105084548 GTTACCAAATACAGATATTGTGGCAGA
1 GCTACCAGA-ACAGATATTGTGACAGA
* *
105084575 GCCACCAGAACAGATAATGTG
1 GCTACCAGAACAGATATTGTG
105084596 GCAAAGCCAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (26 bp):
GCTACCAGAACAGATATTGTGACAGA
Found at i:105084596 original size:26 final size:26
Alignment explanation
Indices: 105084525--105084613 Score: 99
Period size: 26 Copynumber: 3.4 Consensus size: 26
105084515 TAACATGGCT
* **
105084525 ACCAGAACAGATATTGTGACAGAGTT
1 ACCAGAACAGATATTGTGGCAGAGCC
*
105084551 ACCAAATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGGCAGAGCC
* *
105084578 ACCAGAACAGATAATGTGGCAAAGCC
1 ACCAGAACAGATATTGTGGCAGAGCC
*
105084604 ACTA-AACAGA
1 ACCAGAACAGA
105084614 ATACGTGGCA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
25 6 0.11
26 26 0.48
27 22 0.41
ACGTcount: A:0.42, C:0.20, G:0.21, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGCC
Found at i:105084621 original size:25 final size:26
Alignment explanation
Indices: 105084558--105084623 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
105084548 GTTACCAAAT
** *
105084558 ACAGATATTGTGGCAGAGCCACCAGA
1 ACAGATAACGTGGCAAAGCCACCAGA
* *
105084584 ACAGATAATGTGGCAAAGCCACTA-A
1 ACAGATAACGTGGCAAAGCCACCAGA
105084609 ACAGA-ATACGTGGCA
1 ACAGATA-ACGTGGCA
105084624 CAAAGCCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 13 0.37
26 21 0.60
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (26 bp):
ACAGATAACGTGGCAAAGCCACCAGA
Found at i:105084792 original size:22 final size:22
Alignment explanation
Indices: 105084764--105084828 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
105084754 GCAAATACGT
*
105084764 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
105084786 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
105084808 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
105084829 AAGGCTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:105085286 original size:27 final size:26
Alignment explanation
Indices: 105085256--105085722 Score: 320
Period size: 27 Copynumber: 17.3 Consensus size: 26
105085246 GGGGCAAAAT
*
105085256 GGTAATTTTACACCACAAGGGTATCTC
1 GGTAATTTTAC-CCACAAGGGTATTTC
* * * *
105085283 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTTTACC-CACAAGGGTATTTC
*
105085310 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCC-ACAAGGGTATTTC
* * * *
105085337 GGTAGTTCTATCCTACAGGGGTATTTC
1 GGTAATTTTA-CCCACAAGGGTATTTC
* * * *
105085364 AGTAATTCTACCTACAAGGGTATTTT
1 GGTAATTTTACCCACAAGGGTATTTC
*
105085390 GGT-ATTTCTACCCTACAAAGGTATTTC
1 GGTAATTT-TACCC-ACAAGGGTATTTC
* * *
105085417 GGTATTTTTATCCTACAGGGGTATTTC
1 GGTAATTTTA-CCCACAAGGGTATTTC
** * *
105085444 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCC-ACAAGGGTATTTC
*
105085471 GGT-ATTTCTATCCTACAAGGGTATTTC
1 GGTAATTT-TA-CCCACAAGGGTATTTC
105085498 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCC-ACAAGGGTATTTC
* * *
105085525 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCC-ACAAGGGTATTTC
* *
105085552 GGTAATTCTACCATACAAGGGTATTTC
1 GGTAATTTTACC-CACAAGGGTATTTC
* *
105085579 GGT-ATTTCTACCTTACAGGGGTATTTC
1 GGTAATTT-TACC-CACAAGGGTATTTC
* * *
105085606 GATAATTCTACTCA-ACAGAGGTATTTC
1 GGTAATTTTACCCACA-AG-GGTATTTC
* * *
105085633 GGTAATTCTACTCTACATGGGTATTTC
1 GGTAATTTTAC-CCACAAGGGTATTTC
105085660 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCC-ACAAGGGTATTTC
*
105085687 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCC-ACAAGGGTATTTC
*
105085714 GATAATTTT
1 GGTAATTTT
105085723 GTAAATCGAG
Statistics
Matches: 355, Mismatches: 61, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
25 4 0.01
26 40 0.11
27 287 0.81
28 23 0.06
29 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (26 bp):
GGTAATTTTACCCACAAGGGTATTTC
Found at i:105085329 original size:54 final size:54
Alignment explanation
Indices: 105085270--105085720 Score: 555
Period size: 54 Copynumber: 8.4 Consensus size: 54
105085260 ATTTTACACC
* * * * *
105085270 ACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTTGGCATTTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * * * *
105085324 ACAAGGGTATTTCGGTAGTTCTATCCTACAGGGGTATTTCAGTAATTCTA-CCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * * * *
105085377 ACAAGGGTATTTTGGTATTTCTACCCTACAAAGGTATTTCGGTATTTTTATCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* ** * *
105085431 ACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* *
105085485 ACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * * *
105085539 ATAGGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCGGTATTTCTACCTT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * * * * *
105085593 ACAGGGGTATTTCGATAATTCTACTCAAC-AGAGGTATTTCGGTAATTCTACTCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAG-GGTATTTCGGTATTTCTACCCT
* * *
105085647 ACATGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATATTTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
*
105085701 ACAAGGGTATTTCGATAATT
1 ACAAGGGTATTTCGGTAATT
105085721 TTGTAAATCG
Statistics
Matches: 338, Mismatches: 56, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
53 47 0.14
54 289 0.86
55 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
Found at i:105085500 original size:81 final size:80
Alignment explanation
Indices: 105085274--105085714 Score: 580
Period size: 81 Copynumber: 5.5 Consensus size: 80
105085264 TACACCACAA
* * * * *
105085274 GGGTATCTCGGTAATTCTACCTTACAGGGGTATTTTGGCATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTA-CCTACAAGGGTATTTCGG
* *
105085339 TAGTTCTATCCTACAG
65 TATTTCTACCCTACAG
* * *
105085355 GGGTATTTC-AGTAATTCTA-CCTACAAGGGTATTTTGGTATTTCTACCCTACAAAGGTATTTCG
1 GGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTA-CCTACAAGGGTATTTCG
* *
105085418 GTATTTTTATCCTACAG
64 GTATTTCTACCCTACAG
*
105085435 GGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACAAGGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTA-CCTACAAGGGTATTTCGG
*
105085500 TATTTCTACCCTACAA
65 TATTTCTACCCTACAG
* * *
105085516 GGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCATACAAGGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC-TACAAGGGTATTTCGG
*
105085581 TATTTCTACCTTACAG
65 TATTTCTACCCTACAG
* * * * *
105085597 GGGTATTTCGATAATTCTACTCAACAGAGGTATTTCGGTAATTCTACTCTACATGGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC-CTACAAGGGTATTTCGG
*
105085662 TATTTCTACCCTACAA
65 TATTTCTACCCTACAG
* *
105085678 GGGTATTTCGATATTTCTACCCTACAAGGGTATTTCG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCG
105085715 ATAATTTTGT
Statistics
Matches: 321, Mismatches: 34, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
80 74 0.23
81 246 0.77
82 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (80 bp):
GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCTACAAGGGTATTTCGGT
ATTTCTACCCTACAG
Found at i:105088032 original size:2 final size:2
Alignment explanation
Indices: 105088027--105088052 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
105088017 TATACATCAC
105088027 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
105088053 CACTTATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105090945 original size:26 final size:26
Alignment explanation
Indices: 105090878--105090955 Score: 111
Period size: 27 Copynumber: 3.0 Consensus size: 26
105090868 CATGGCTGCT
* *
105090878 AGAACAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
105090904 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
* *
105090931 AGAACAGATAATGTGGCAAAGCCAC
1 AGAACAGATATTGTGGCAGAGCCAC
105090956 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 23 0.49
27 24 0.51
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:105091087 original size:22 final size:22
Alignment explanation
Indices: 105091062--105091122 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
105091052 AATACGTTTG
*
105091062 GCACACAGCCATAATCAGGTTA
1 GCACAAAGCCATAATCAGGTTA
* * *
105091084 GCACATAGCCAT-ATGTAGGTTG
1 GCACAAAGCCATAAT-CAGGTTA
*
105091106 GCTCAAAGCCATAATCA
1 GCACAAAGCCATAATCA
105091123 AAAGGCTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (22 bp):
GCACAAAGCCATAATCAGGTTA
Found at i:105092009 original size:27 final size:27
Alignment explanation
Indices: 105091568--105092008 Score: 580
Period size: 27 Copynumber: 16.3 Consensus size: 27
105091558 TACCCCATAA
* *
105091568 GGGTATCTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091595 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091622 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
** *
105091649 GGGTATTTCAATAATTCTATCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091676 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* * * *
105091703 GGGTATTTCGGCATTTTTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
105091730 GGGTATTTCGGTAATTCTATCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
105091757 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
105091784 GGGTATTTTC-GTAATTCTACCCTACAG
1 GGGTA-TTTCGGTAATTCTACCCTACAG
* *
105091811 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091838 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
105091865 GGGTATTTCAGG-AATTCTACCCTACAA
1 GGGTATTTC-GGTAATTCTACCCTACAG
** *
105091892 GGGTATTTTAGTAATTTTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091919 GGGTATTTTGGTATTTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091946 GGGTCTTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
105091973 GGGTATTTCAGTAATTGTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
105092000 GGGTATTTC
1 GGGTATTTC
105092009 AATTGTTTTG
Statistics
Matches: 368, Mismatches: 42, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
26 5 0.01
27 357 0.97
28 6 0.02
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:105092192 original size:26 final size:27
Alignment explanation
Indices: 105092047--105092337 Score: 290
Period size: 27 Copynumber: 10.9 Consensus size: 27
105092037 GTAATTCTGT
* *
105092047 AAATCG-GGAGTACTTTGGTAATTTTAC
1 AAATCGAGG-GTATTTTAGTAATTTTAC
* * *
105092074 AAGTCGAAGGTATTTTAGTAATTTTGC
1 AAATCGAGGGTATTTTAGTAATTTTAC
* * *
105092101 AAATTGAGGGTATTTCAGTAATTTTGC
1 AAATCGAGGGTATTTTAGTAATTTTAC
**
105092128 AAA-CTGAGGGTATTTCGGTAATTTTAC
1 AAATC-GAGGGTATTTTAGTAATTTTAC
105092155 AAATCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTAC
*
105092182 -AATCGATGGTATTTT-GATAATTTTAC
1 AAATCGAGGGTATTTTAG-TAATTTTAC
105092208 AAATCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTAC
* **
105092235 -AATCGACGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTAC
* ** *
105092261 AAATCGAGGATATTTGGGTAATTTTAT
1 AAATCGAGGGTATTTTAGTAATTTTAC
* *
105092288 AAATCG-GGGCTACTTTGGTAATTTTAC
1 AAATCGAGGG-TATTTTAGTAATTTTAC
* * *
105092315 AACT-GGGGGTATTTCAGTAATTT
1 AAATCGAGGGTATTTTAGTAATTT
105092338 GGTAAACTAA
Statistics
Matches: 224, Mismatches: 31, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.00
26 60 0.27
27 160 0.71
28 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AAATCGAGGGTATTTTAGTAATTTTAC
Found at i:105092212 original size:53 final size:53
Alignment explanation
Indices: 105092047--105092337 Score: 318
Period size: 53 Copynumber: 5.5 Consensus size: 53
105092037 GTAATTCTGT
* * * * *
105092047 AAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAAGGTATTTTAGTAATTTTGC
1 AAATCGAGG-GTATTTTAGTAATTTTACAA-TCGAGGGTATTTTGGTAATTTTAC
* * * * *
105092101 AAATTGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTACAATC-GAGGGTATTTTGGTAATTTTAC
* *
105092155 AAATCGAGGGTATTTTAGTAATTTTACAATCGATGGTATTTTGATAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTTGGTAATTTTAC
* *
105092208 AAATCGAGGGTATTTTAGTAATTTTACAATCGACGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTTGGTAATTTTAC
* ** * *
105092261 AAATCGAGGATATTTGGGTAATTTTATAAATCG-GGGCTACTTTGGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTA-CAATCGAGGG-TATTTTGGTAATTTTAC
* * *
105092315 AACT-GGGGGTATTTCAGTAATTT
1 AAATCGAGGGTATTTTAGTAATTT
105092338 GGTAAACTAA
Statistics
Matches: 201, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
53 110 0.55
54 89 0.44
55 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
AAATCGAGGGTATTTTAGTAATTTTACAATCGAGGGTATTTTGGTAATTTTAC
Found at i:105092230 original size:80 final size:79
Alignment explanation
Indices: 105092047--105092337 Score: 297
Period size: 80 Copynumber: 3.6 Consensus size: 79
105092037 GTAATTCTGT
* * * * *
105092047 AAATCGGGAGTACTTTGGTAATTTTACAAGTCGAAGGTATTTTAGTAATTTTGCAAATTGAGGGT
1 AAATCGGG-GTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGA-GGT
* *
105092112 A-TTTCAGTAATTTTGC
64 ATTTTGA-TAATTTTAC
*
105092128 AAA-CTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCGATG
1 AAATC-G-GGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGA-G
105092190 GTATTTTGATAATTTTAC
62 GTATTTTGATAATTTTAC
* * * *
105092208 AAATCGAGGGTATTTTAGTAATTTTAC-AATCGACGGTATTTCGGTAATTTTACAAATCGAGGAT
1 AAATCG-GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGG-T
* * *
105092272 ATTTGGGTAATTTTAT
64 ATTTTGATAATTTTAC
* *
105092288 AAATCGGGGCTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 AAATCGGGG-TACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
105092338 GGTAAACTAA
Statistics
Matches: 180, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
79 28 0.16
80 98 0.54
81 52 0.29
82 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (79 bp):
AAATCGGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGTAT
TTTGATAATTTTAC
Found at i:105094701 original size:42 final size:42
Alignment explanation
Indices: 105094642--105094738 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
105094632 TCAGTCTCAT
* **
105094642 ACACTAAGTTCCATATATATAGCCGAAGCTAT-TCTGATTCGC
1 ACACTAAGTGCCATATATATAGCCGAAGCTATCTC-GAAACGC
*
105094684 ACACTAAGTGCTATATATATAGCCGAAGCTATCTCGAAACGC
1 ACACTAAGTGCCATATATATAGCCGAAGCTATCTCGAAACGC
105094726 ACACTAAGTGCCA
1 ACACTAAGTGCCA
105094739 AACATAGTCG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
42 47 0.96
43 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (42 bp):
ACACTAAGTGCCATATATATAGCCGAAGCTATCTCGAAACGC
Found at i:105108710 original size:29 final size:29
Alignment explanation
Indices: 105108671--105108745 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
105108661 GGTTGAGAGA
* *
105108671 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
105108700 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
105108729 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
105108746 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:105110491 original size:41 final size:42
Alignment explanation
Indices: 105110446--105110604 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 42
105110436 CGATTCTTAG
105110446 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGAC
* * **
105110487 CACTGGCTCGAAGGCCCTTCG-GAATTAAG-TCCGG-TTATGA-
1 CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTATGAC
* * * * * *
105110527 CACTGGCTCTAAAGCCCTTCGAAACTAAGTTC-GATTATTAG
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGAC
105110568 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
105110605 TAGACCCCGA
Statistics
Matches: 97, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
39 1 0.01
40 35 0.36
41 57 0.59
42 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (42 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGAC
Found at i:105112265 original size:29 final size:29
Alignment explanation
Indices: 105112199--105112298 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 29
105112189 CTCAATCACA
* * *
105112199 CACACTTAGTGCCATGT-GATTC-AACCCG
1 CACACTTAGTGCCATATAG-TACAAACTCG
* *
105112227 CACACATAGTGCCATATAGTCCAAACTCG
1 CACACTTAGTGCCATATAGTACAAACTCG
* * *
105112256 CACACTTAGTGCCATACATTACAAGCTCG
1 CACACTTAGTGCCATATAGTACAAACTCG
*
105112285 CACACTCAGTGCCA
1 CACACTTAGTGCCA
105112299 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 17 0.28
29 43 0.72
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (29 bp):
CACACTTAGTGCCATATAGTACAAACTCG
Found at i:105123682 original size:25 final size:25
Alignment explanation
Indices: 105123654--105123701 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105123644 TTATACCATG
* * *
105123654 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105123679 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105123702 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105123804 original size:20 final size:20
Alignment explanation
Indices: 105123744--105123804 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
105123734 ATAAATATGG
*
105123744 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
105123764 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
105123784 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
105123804 T
1 T
105123805 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:105123932 original size:23 final size:23
Alignment explanation
Indices: 105123854--105124020 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
105123844 GAGGAAGTGA
*
105123854 AAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
105123877 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
105123901 CAAAAGGGCTTATGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
105123925 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
105123948 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
105123972 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
105123996 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105124020 A
1 A
105124021 TGATAAAGCA
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
23 44 0.33
24 78 0.59
25 10 0.08
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:105123947 original size:47 final size:46
Alignment explanation
Indices: 105123854--105124005 Score: 232
Period size: 47 Copynumber: 3.2 Consensus size: 46
105123844 GAGGAAGTGA
105123854 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCTAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
105123901 CAAAAGGGCTTATGCCCTAGTTATAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCTAGTTATAAAAGGGCTTATGCCCCAGTTAT
* * *
105123948 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCTAGTTA-TAAAAGGGCTTATGCCCCAGTTA-T
105123996 AAAAGAGGCT
1 AAAAG-GGCT
105124006 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
46 21 0.21
47 44 0.45
48 29 0.30
49 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCTAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:105125018 original size:40 final size:41
Alignment explanation
Indices: 105124961--105125063 Score: 129
Period size: 40 Copynumber: 2.5 Consensus size: 41
105124951 GTTACAAGAC
* * *
105124961 CACTGGCT-TGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 CACTGGCTCT-AAAGCCCTTCGAAACTAAGTCCGATTATGAG
* *
105125001 CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGATTATTAG
1 CACTGGCTCTAAAGCCCTTCGAAACTAAGTCCGATTATGAG
*
105125042 CACTGGCTCAAAAGCCCTTCGA
1 CACTGGCTCTAAAGCCCTTCGA
105125064 GACCAAGCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
40 33 0.60
41 22 0.40
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (41 bp):
CACTGGCTCTAAAGCCCTTCGAAACTAAGTCCGATTATGAG
Found at i:105132838 original size:48 final size:48
Alignment explanation
Indices: 105132755--105133269 Score: 617
Period size: 48 Copynumber: 10.8 Consensus size: 48
105132745 CTCGTGCCCT
* *
105132755 AAGTGCCAATATCATGGCCC-AATG-CAAACTCAATGTATCTTGCACCCG
1 AAGTGCCAATATCATGGCCCGAA-GCCAAA-TCAATGTAACTCGCACCCG
* *
105132803 AAGTGCCAATATCATGGCCCGAAGCCAAATTAATGTAACTCGCACCTG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * * * *
105132851 AAGTGCTAATATCATGGCCCGAAGACAAACCAAAGTAACTCACACCTG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * *
105132899 AAGTGCCAATATCATGGCCCGAAGCTAAATCATTGTAACTTGCACCAG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * *
105132947 AAGTGCCAATATCATGGCCCGAAGCTAAATTAAAGTAACTCGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * *
105132995 AAGTGCCAATATCATAGCCTGAAGCCAAATCAATGTAACTCGTA-CCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * * * * * *
105133042 AAGTGCCAAAATCATAGCCCAAAGCCAAATCAAAGTAGCTCACACACG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * *
105133090 AAGTGCCAATATCATGGCCCGAAGCCAGAA-CAA-ATAACTCGCACTCA
1 AAGTGCCAATATCATGGCCCGAAGCCA-AATCAATGTAACTCGCACCCG
* ** * *
105133137 AAGTGCCAATATTATGGCCTAAAGCCAAATCAATGTAACTCGCAACTG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
* * *
105133185 AAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAACACGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
105133233 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTA
105133270 TTCTGACATG
Statistics
Matches: 395, Mismatches: 66, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
46 2 0.01
47 75 0.19
48 310 0.78
49 8 0.02
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.19
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCG
Found at i:105133189 original size:143 final size:142
Alignment explanation
Indices: 105132755--105133262 Score: 585
Period size: 143 Copynumber: 3.5 Consensus size: 142
105132745 CTCGTGCCCT
* * * ** *
105132755 AAGTGCCAATATCATGGCCCAATG-CAAACTCAATGTATCTTGCACCCGAAGTGCCAATATCATG
1 AAGTGCCAATATCATGGCCCAAAGCCAAA-TCAAAGTAACTCACACACGAAGTGCCAATATCATG
* * * * *
105132819 GCCCGAAGCCAAATTAATGTAACTCGCACCTGAAGTGCTAATATCATGGCCCGAAGACAAACCAA
65 GCCCGAAGCCAAATTAA-ATAACTCGCACC-GAAGTGCCAATATCATGGCCTGAAGCCAAATCAA
* * *
105132884 AGTAACTCACACCTG
128 TGTAACTCGCAACTG
* * **
105132899 AAGTGCCAATATCATGGCCCGAAGCTAAATCATTGTAACTTGCAC-CA-GAAGTGCCAATATCAT
1 AAGTGCCAATATCATGGCCCAAAGCCAAATCAAAGTAAC-T-CACACACGAAGTGCCAATATCAT
* *
105132962 GGCCCGAAGCTAAATTAAAGTAACTCGCACCCGAAGTGCCAATATCATAGCCTGAAGCCAAATCA
64 GGCCCGAAGCCAAATTAAA-TAACTCGCA-CCGAAGTGCCAATATCATGGCCTGAAGCCAAATCA
* **
105133027 ATGTAACTCG-TACCA
127 ATGTAACTCGCAACTG
* * *
105133042 AAGTGCCAAAATCATAGCCCAAAGCCAAATCAAAGTAGCTCACACACGAAGTGCCAATATCATGG
1 AAGTGCCAATATCATGGCCCAAAGCCAAATCAAAGTAACTCACACACGAAGTGCCAATATCATGG
* * * *
105133107 CCCGAAGCCAGAA-CAAATAACTCGCACTCAAAGTGCCAATATTATGGCCTAAAGCCAAATCAAT
66 CCCGAAGCCA-AATTAAATAACTCGCAC-CGAAGTGCCAATATCATGGCCTGAAGCCAAATCAAT
105133171 GTAACTCGCAACTG
129 GTAACTCGCAACTG
* * * * *
105133185 AAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAACACGCACCCGAAGTGCCAATATCATGG
1 AAGTGCCAATATCATGGCCCAAAGCCAAATCAAAGTAACTCACACACGAAGTGCCAATATCATGG
105133250 CCCGAAGCCAAAT
66 CCCGAAGCCAAAT
105133263 CAATGTATTC
Statistics
Matches: 308, Mismatches: 45, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
141 4 0.01
142 54 0.18
143 132 0.43
144 110 0.36
145 7 0.02
146 1 0.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.19
Consensus pattern (142 bp):
AAGTGCCAATATCATGGCCCAAAGCCAAATCAAAGTAACTCACACACGAAGTGCCAATATCATGG
CCCGAAGCCAAATTAAATAACTCGCACCGAAGTGCCAATATCATGGCCTGAAGCCAAATCAATGT
AACTCGCAACTG
Found at i:105135339 original size:46 final size:45
Alignment explanation
Indices: 105135282--105135479 Score: 157
Period size: 46 Copynumber: 4.3 Consensus size: 45
105135272 TACTCGTCAA
*
105135282 GGTTAAACCTACACGAATCAGATAATAGTGTCTTATCACCCGTTAG
1 GGTTGAACCTACACGAATCAGATAATAGTG-CTTATCACCCGTTAG
* * * *
105135328 GGTTGAACCTACACAAATCGGATAATA-TCGCCTAGTCACTCGTTAG
1 GGTTGAACCTACACGAATCAGATAATAGT-GCTTA-TCACCCGTTAG
* * * * * * * *
105135374 GTTTGAACCTACAAGGATCATATAATAATGCTTGGTCACCTGTTAT
1 GGTTGAACCTACACGAATCAGATAATAGTGCTT-ATCACCCGTTAG
* * * * * *
105135420 GGTTGAACCTACATGAAAT-GGATAATAGTGCCTGACCACCTGTTAA
1 GGTTGAACCTACACG-AATCAGATAATAGTG-CTTATCACCCGTTAG
105135466 GGTTGAACCTACAC
1 GGTTGAACCTACAC
105135480 AACAAATAGC
Statistics
Matches: 119, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
45 4 0.03
46 110 0.92
47 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (45 bp):
GGTTGAACCTACACGAATCAGATAATAGTGCTTATCACCCGTTAG
Found at i:105135472 original size:92 final size:92
Alignment explanation
Indices: 105135273--105135478 Score: 217
Period size: 92 Copynumber: 2.2 Consensus size: 92
105135263 GTGCCTGGTT
* * * *
105135273 ACTCGTCAAGGTTAAACCTACACGAATCAGATAATAGTGTCTTATCACCCGTTAGGGTTGAACCT
1 ACTCGTTAAGGTTGAACCTACAAGAATCAGATAATAATGTCTTATCACCCGTTAGGGTTGAACCT
*
105135338 ACACAAATCGGATAATATCGCCTAGTC
66 ACACAAATCGGATAATATCGCCTAGCC
* * * * *
105135365 ACTCGTT-AGGTTTGAACCTACAAGGATCATATAATAATG-CTTGGTCACCTGTTATGGTTGAAC
1 ACTCGTTAAGG-TTGAACCTACAAGAATCAGATAATAATGTCTT-ATCACCCGTTAGGGTTGAAC
*
105135428 CTACATGAAAT-GGATAATAGT-GCCT-GACC
64 CTACA-CAAATCGGATAATA-TCGCCTAG-CC
105135457 AC-CTGTTAAGGTTGAACCTACA
1 ACTC-GTTAAGGTTGAACCTACA
105135479 CAACAAATAG
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
91 8 0.08
92 80 0.83
93 8 0.08
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (92 bp):
ACTCGTTAAGGTTGAACCTACAAGAATCAGATAATAATGTCTTATCACCCGTTAGGGTTGAACCT
ACACAAATCGGATAATATCGCCTAGCC
Found at i:105142036 original size:55 final size:53
Alignment explanation
Indices: 105141951--105142150 Score: 207
Period size: 55 Copynumber: 3.8 Consensus size: 53
105141941 ATTAAGGTTT
* *
105141951 AAGGATA-C-TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA-GTTTCTAAGGC
* * * * *
105142004 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCTAAGGC
* *
105142059 AAAGG-TCCCATGTAAGACCATATCAAGACATGGCAATGGTAAGTTTC-AA---
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCTAAGGC
* *
105142108 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
105142151 GTACCCATGT
Statistics
Matches: 124, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
48 4 0.03
49 34 0.27
52 2 0.02
53 10 0.08
54 6 0.05
55 64 0.52
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCTAAGGC
Found at i:105145593 original size:46 final size:47
Alignment explanation
Indices: 105145456--105145595 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 47
105145446 GGTTATTTGT
* **
105145456 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGC-ATTGAGATG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTA-TGAGATGTA
* * *
105145504 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAACCT-CGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-AGCTATGAGATGTA
*
105145551 -AGCCAGTGTAAGACATGTCTGGGATATGCATCAGCTATGAGATGT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTATGAGATGT
105145596 GTCAATGTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.04
46 47 0.60
47 15 0.19
48 13 0.17
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTATGAGATGTA
Found at i:105150810 original size:40 final size:40
Alignment explanation
Indices: 105150751--105150919 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
105150741 CGGGACTTTA
* * *
105150751 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
105150791 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
105150831 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
105150871 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
105150911 CCCGGATAT
1 CCCGGATAT
105150920 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:105161187 original size:66 final size:68
Alignment explanation
Indices: 105161109--105161295 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
105161099 TAGTACCACT
*
105161109 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
105161171 CACG
65 CACG
105161175 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
105161240 ATCACG
63 ATCACG
105161246 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
105161296 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:105161220 original size:71 final size:71
Alignment explanation
Indices: 105161132--105161295 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
105161122 CGATTTGTCT
105161132 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
105161197 CTTTCA
66 CTTTCA
105161203 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
105161268 CTTTCA
66 CTTTCA
105161274 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
105161296 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:105161333 original size:71 final size:70
Alignment explanation
Indices: 105161132--105161329 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
105161122 CGATTTGTCT
* * * *
105161132 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
105161197 CTTTCA
65 CTTTCA
* * * *
105161203 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
105161268 CTTTCA
65 CTTTCA
* *
105161274 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
105161330 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:105168754 original size:71 final size:67
Alignment explanation
Indices: 105168666--105168858 Score: 262
Period size: 66 Copynumber: 2.8 Consensus size: 67
105168656 CGATTTGTCT
* * * *
105168666 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGG-GTACAT--C-TCGAATCACACATGCGACCTAGCTACATTTAT
105168731 CTTTCA
62 CTTTCA
* *
105168737 CGTAGCTCTCTTGTCTACAT-GGTACATCTCGTATCACACATGTGACCTAGCTACATTTATCTTT
1 CGTAGCTCTCTTGTCTACATGGGTACATCTCGAATCACACATGCGACCTAGCTACATTTATCTTT
105168801 CA
66 CA
* *
105168803 CGTAGCTCTCTTGTCTACATGGGATACATCTCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGG-TACATCTCGAATCACACATGCGACCTAGCTAC
105168859 TACAGGGTGT
Statistics
Matches: 114, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
66 54 0.47
67 3 0.03
68 32 0.28
69 4 0.04
70 1 0.01
71 20 0.18
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.34
Consensus pattern (67 bp):
CGTAGCTCTCTTGTCTACATGGGTACATCTCGAATCACACATGCGACCTAGCTACATTTATCTTT
CA
Done.