Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 344 of 770
Found at i:105602861 original size:58 final size:58
Alignment explanation
Indices: 105602709--105602868 Score: 167
Period size: 58 Copynumber: 2.8 Consensus size: 58
105602699 AATTTAAGCC
* *** * * ** * *
105602709 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * * *
105602767 TGCACACATAGTGTCGTATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
105602825 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
105602869 AATCTCGTCA
Statistics
Matches: 81, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
58 81 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:105602869 original size:29 final size:29
Alignment explanation
Indices: 105602738--105602869 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
105602728 CCTTCGAGCT
** * * *
105602738 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * * *
105602767 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
105602796 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
105602825 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
105602854 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
105602870 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:105603703 original size:143 final size:141
Alignment explanation
Indices: 105603514--105603808 Score: 545
Period size: 143 Copynumber: 2.1 Consensus size: 141
105603504 AAATTCTATA
105603514 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
105603579 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAA
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAA
*
105603644 GAAGACAACAT
131 GAAAACAACAT
*
105603655 GCATGGCCGACTACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
105603720 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
105603785 AGGAAAACAACAT
129 AAGAAAACAACAT
105603798 GCATGGCCGAA
1 GCATGGCCGAA
105603809 ATTTAACTCA
Statistics
Matches: 148, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 18 0.12
143 130 0.88
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAA
GAAAACAACAT
Found at i:105609831 original size:18 final size:16
Alignment explanation
Indices: 105609798--105609832 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
105609788 TTCAATTTCA
105609798 TAATTTACTCACTATT
1 TAATTTACTCACTATT
105609814 TAATTATACTCTACTATT
1 TAATT-TACTC-ACTATT
105609832 T
1 T
105609833 TTAGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATTTACTCACTATT
Found at i:105615435 original size:40 final size:40
Alignment explanation
Indices: 105615332--105615512 Score: 224
Period size: 40 Copynumber: 4.5 Consensus size: 40
105615322 TATTCGAATG
*
105615332 ATATCCGGGCTAAG-CCCG-AGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
105615371 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
105615411 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
105615451 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
105615491 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
105615513 ACCTTGTGCA
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 13 0.11
40 94 0.78
41 13 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:105619369 original size:71 final size:71
Alignment explanation
Indices: 105619281--105619444 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
105619271 GAGATGTATC
*
105619281 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATATAGCTAGGTCGCATGCGTGATTCCAAGTGA
105619346 AGGACA
66 AGGACA
105619352 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATATAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATATAGCTAGGTCGCATGCGTGATTCCAAGTGA
105619417 AGGACA
66 AGGACA
105619423 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
105619445 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATATAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:105622798 original size:29 final size:29
Alignment explanation
Indices: 105622756--105622831 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
105622746 GAACAATTAT
*
105622756 CATGGCTCGAAGCCAAATCATCAGATATG
1 CATGGCCCGAAGCCAAATCATCAGATATG
* * *
105622785 CATGGCCCAAAGCCAAGTCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCAGATATG
*
105622814 CATGGCCTGAAGCCAAAT
1 CATGGCCCGAAGCCAAAT
105622832 TGATATAACT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCAGATATG
Found at i:105627506 original size:24 final size:24
Alignment explanation
Indices: 105627474--105627521 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
105627464 TATTGCTGAG
105627474 ATAGTATGCCAACACGGAATACCA
1 ATAGTATGCCAACACGGAATACCA
*
105627498 ATAGTATGCCAACATGGAATACCA
1 ATAGTATGCCAACACGGAATACCA
105627522 TCTTTCATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.19
Consensus pattern (24 bp):
ATAGTATGCCAACACGGAATACCA
Found at i:105639545 original size:25 final size:25
Alignment explanation
Indices: 105639517--105639591 Score: 105
Period size: 25 Copynumber: 3.0 Consensus size: 25
105639507 CGTTTCGACC
* *
105639517 TATAGATCGTGTGAGCATGCCGATT
1 TATAGCTCGTGTGAGCATACCGATT
* *
105639542 TATAGCTCGTGAGAGCATACCGATC
1 TATAGCTCGTGTGAGCATACCGATT
*
105639567 TATAGCTCGAGTGAGCATACCGATT
1 TATAGCTCGTGTGAGCATACCGATT
105639592 CACAGCTAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (25 bp):
TATAGCTCGTGTGAGCATACCGATT
Found at i:105642481 original size:40 final size:40
Alignment explanation
Indices: 105642437--105642662 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
105642427 GCTACTCGTT
* * *
105642437 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
105642477 CAAATGCCTTCGGGATTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
105642517 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
105642557 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
105642597 CAAATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
105642638 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
105642663 CATCATTCGA
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 150 0.90
41 13 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:105650689 original size:78 final size:79
Alignment explanation
Indices: 105650509--105650719 Score: 336
Period size: 78 Copynumber: 2.7 Consensus size: 79
105650499 GCTACTCGTT
* *
105650509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAA-CCG
**
105650573 GATTTAGTAACTCGGA
64 GATTTAGTAACTCACA
* *
105650589 AAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACAAATGCCTTCGGGACTTAA-CGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGA
105650653 TTTAGTAACTCACA
66 TTTAGTAACTCACA
105650667 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
105650720 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 67 0.55
80 53 0.43
81 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGA
TTTAGTAACTCACA
Found at i:105650732 original size:118 final size:119
Alignment explanation
Indices: 105650509--105650738 Score: 340
Period size: 118 Copynumber: 1.9 Consensus size: 119
105650499 GCTACTCGTT
* *
105650509 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATA-CACGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* *
105650574 ATTTAGTAACTCGGAAAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
65 ATTTAGTAACTCGCAAAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCACA
*
105650629 CAAATGCCTTCGGGACTTA-ACGGATT-TAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATACACGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* **
105650692 ATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGT
65 ATTTAGTAACTCGCAAAAATGCCTTCGGGA-CTTAACCCGGATATAGT
105650739 CCGGATATAG
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
117 3 0.03
118 77 0.77
119 2 0.02
120 18 0.18
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATACACGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCAAAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCACA
Found at i:105650733 original size:40 final size:40
Alignment explanation
Indices: 105650509--105650719 Score: 338
Period size: 40 Copynumber: 5.3 Consensus size: 40
105650499 GCTACTCGTT
* *
105650509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
105650549 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
105650589 AAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
105650629 CAAATGCCTTCGGGACTTAA--CGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
105650667 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
105650707 CAAATGCCTTCGG
1 CAAATGCCTTCGG
105650720 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 38 0.24
40 120 0.75
41 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:105650740 original size:11 final size:11
Alignment explanation
Indices: 105650724--105650750 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
105650714 CTTCGGATCT
105650724 TAGTCCGGATA
1 TAGTCCGGATA
105650735 TAGTCCGGATA
1 TAGTCCGGATA
105650746 TAGTC
1 TAGTC
105650751 ACTTAGCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (11 bp):
TAGTCCGGATA
Found at i:105653854 original size:34 final size:34
Alignment explanation
Indices: 105653811--105653875 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
105653801 TTACTGTCGC
*
105653811 TGTAATGGGCTAAGGCCC-ACACTGATATTGATAT
1 TGTAATGGGCTAAGGCCCTA-ACTGAAATTGATAT
*
105653845 TGTAATGGGCTATGGCCCTAACTGAAATTGA
1 TGTAATGGGCTAAGGCCCTAACTGAAATTGA
105653876 ACTGTTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.96
35 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (34 bp):
TGTAATGGGCTAAGGCCCTAACTGAAATTGATAT
Found at i:105656587 original size:47 final size:46
Alignment explanation
Indices: 105656517--105656787 Score: 217
Period size: 47 Copynumber: 5.8 Consensus size: 46
105656507 ATTTGTGTGT
* *
105656517 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACA-GATGA
* *
105656563 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-CATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCA--CAGATGA
* * * * * * *
105656611 GGGCTAATGTAAGACATGTCTGGCACAT-GCATCGGCCTCGAGAAGT
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-AGATGA
* * * *
105656657 GAGCCAGTGTAAGACATGTTTGGGACAT-ACATCGGCTATGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCA-CAGATGA
* * * ** *** *
105656703 TAGTCAGTGTAAGACCATGTTTGGGACATGGCATCAACTTGAGATGT
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACAGATGA
*
105656750 GAGCCAGTGTAAGACTGTGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
105656788 ACCTTACCCA
Statistics
Matches: 178, Mismatches: 37, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
46 70 0.39
47 80 0.45
48 27 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAGATGA
Found at i:105656737 original size:94 final size:93
Alignment explanation
Indices: 105656519--105656788 Score: 291
Period size: 94 Copynumber: 2.9 Consensus size: 93
105656509 TTGTGTGTGA
* * *
105656519 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTGAGCCAGTGTAAGA-CATGT
* * *
105656583 CTGGGACATGGCATTGGCATTGAGATGAGG
64 TTGGGACATGGCATCGGCATTGAGATGAAG
* * *
105656613 GCTAATGTAAGACATGTCTGGCACATGCATCGGCCTCGAGAAGTGAGCCAGTGTAAGACATGTTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGAGCCAGTGTAAGACATGTTT
*
105656678 GGGACAT-ACATCGGC-TATGAGATGATAG
66 GGGACATGGCATCGGCAT-TGAGATGA-AG
* * ** *
105656706 TC-AGTGTAAGACCATGTTTGGGACATGGCATC-AACTTGAGATGTGAGCCAGTGTAAGAC-TGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTGAGCCAGTGTAAGACATGT
105656768 GTCTGGGACATGGCATCGGCA
64 -T-TGGGACATGGCATCGGCA
105656789 CCTTACCCAT
Statistics
Matches: 148, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
91 1 0.01
92 25 0.17
93 51 0.34
94 63 0.43
95 8 0.05
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGAGCCAGTGTAAGACATGTTT
GGGACATGGCATCGGCATTGAGATGAAG
Found at i:105656771 original size:140 final size:141
Alignment explanation
Indices: 105656515--105656787 Score: 345
Period size: 140 Copynumber: 1.9 Consensus size: 141
105656505 TCATTTGTGT
* * *
105656515 GTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCA
1 GTGAGCCAGTGTAAGACATGTCTGGGACATACATCGGCCACATGATGAGAGCCAGTGTAAGACCA
*** * *
105656580 TGTCTGGGACATGGCATTGGCATTGAGATGAGGGCTAATGTAAGACATGTCTGGCACAT-GCATC
66 TGTCTGGGACATGGCATCAACATTGAGATGAGAGCCAATGTAAGACATGTCTGGCACATGGCATC
105656644 GGCCTCGAGAA
131 GGCCTCGAGAA
* * * * *
105656655 GTGAGCCAGTGTAAGACATGTTTGGGACATACATCGGCTATGA-GATGATAGTCAGTGTAAGACC
1 GTGAGCCAGTGTAAGACATGTCTGGGACATACATCGGCCA-CATGATGAGAGCCAGTGTAAGACC
* * * * *
105656719 ATGTTTGGGACATGGCATCAAC-TTGAGATGTGAGCCAGTGTAAGACTGTGTCTGGGACATGGCA
65 ATGTCTGGGACATGGCATCAACATTGAGATGAGAGCCAATGTAAGAC-ATGTCTGGCACATGGCA
105656783 TCGGC
129 TCGGC
105656788 ACCTTACCCA
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
139 20 0.18
140 83 0.74
141 9 0.08
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (141 bp):
GTGAGCCAGTGTAAGACATGTCTGGGACATACATCGGCCACATGATGAGAGCCAGTGTAAGACCA
TGTCTGGGACATGGCATCAACATTGAGATGAGAGCCAATGTAAGACATGTCTGGCACATGGCATC
GGCCTCGAGAA
Found at i:105659127 original size:50 final size:49
Alignment explanation
Indices: 105658989--105659172 Score: 165
Period size: 50 Copynumber: 3.7 Consensus size: 49
105658979 ATCTATTGTG
* * * * *
105658989 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CCG--GACTGT
* * * * ***
105659041 -GATCACGTGTGTAGTACTAAGTGCAGGCTACAACGTGTATTTGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGACT-GT
105659089 GAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGACTGT
1 -AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGACTGT
* * * *
105659139 TGGTCGCATGTGTAGTACTATGTGTAGCCTACTA
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTA
105659173 TGCGTACCAG
Statistics
Matches: 107, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 30 0.28
50 39 0.36
51 34 0.32
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGACTGT
Found at i:105667287 original size:46 final size:46
Alignment explanation
Indices: 105667092--105667349 Score: 202
Period size: 46 Copynumber: 5.5 Consensus size: 46
105667082 TGTGTGAGCT
* * * * *
105667092 AGTGTAAGAAATGTCTGGGACATGCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGCC
* * * * *
105667138 AGTGTAAGACCATGTCTAGTACATGGCATTGGC-ATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGATGATAGCC
* * * * *
105667186 AGTGTAAGACATGCCTGGCACATGCATCTGCTTTGAGAAG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAT-AGCC
* **
105667232 AGTGCAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGCC
* *
105667278 AGTGTAAGACTATGTTTGGGACATGGCATCGACT-TGAGATG-TGAGCC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTATGAGATGAT-AGCC
* *
105667325 ACTGTAAGACTGTGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
105667350 GCATTGGCAC
Statistics
Matches: 170, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
46 71 0.42
47 66 0.39
48 32 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGCC
Found at i:105667315 original size:93 final size:92
Alignment explanation
Indices: 105667134--105667358 Score: 231
Period size: 93 Copynumber: 2.4 Consensus size: 92
105667124 ACATTATGAG
* * *
105667134 AGCCAGTGTAAGACCATGTCTAGTACATGGCATTGGCATTGAGATGAGAGCTAGTGTAAGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGATGAGAGCTAGTGTAAGACATG
105667199 CCTGGCACATGCATCTGCTTTGAGAAGTA
64 CCTGGCACATGCATCTGCTTTGAGAAGTA
* * *
105667228 AGCCAGTGCAAGACATGTCTGGGACATGCATCGGC-TATGAGATGATAGTTAGTGTAAGACTATG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGATGAGAGCTAGTGTAAGAC-ATG
** * * *
105667292 TTTGGGACATGGCATC-GAC-TTGAGATGTG
64 CCTGGCACAT-GCATCTG-CTTTGAGAAGTA
* * *
105667321 AGCCACTGTAAGACTGTGTCTGGGACATGGCATTGGCA
1 AGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCA
105667359 CCTTAACCAT
Statistics
Matches: 109, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 28 0.26
93 43 0.39
94 30 0.28
95 7 0.06
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (92 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGCC
TGGCACATGCATCTGCTTTGAGAAGTA
Found at i:105671964 original size:43 final size:43
Alignment explanation
Indices: 105671877--105671968 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
105671867 TCTCACAAGT
**
105671877 CATA-CAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCA
1 CATATCAATGCCAACGTCCCAGACGTGGTCTTACATGTAAACA
105671919 CATATCAATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACA
1 CATATCAATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACA
105671962 CATATCA
1 CATATCA
105671969 GAATCACATA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
42 7 0.16
43 36 0.82
44 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
CATATCAATGCCAACGTCCCAGACGTGGTCTTACATGTAAACA
Found at i:105674175 original size:20 final size:20
Alignment explanation
Indices: 105674150--105674188 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
105674140 AGGGACTAAA
* *
105674150 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
105674170 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
105674189 TATTAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:105677416 original size:41 final size:41
Alignment explanation
Indices: 105677371--105677448 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
105677361 CCAAGAAATA
*
105677371 ATTTTTCCCAGAGCTCCTCTGATAATCAAATCCGAGTAATC
1 ATTTTTCCCAGAGCTCCTCCGATAATCAAATCCGAGTAATC
* *
105677412 ATTTTTCCGAGAGCTCCTCCGATAATCGAATCCGAGT
1 ATTTTTCCCAGAGCTCCTCCGATAATCAAATCCGAGT
105677449 CCTAATTAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (41 bp):
ATTTTTCCCAGAGCTCCTCCGATAATCAAATCCGAGTAATC
Found at i:105679318 original size:40 final size:41
Alignment explanation
Indices: 105679270--105679365 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 41
105679260 TCTCAGACGT
**
105679270 GGTCTTACATGTAATCAAATATG-GCCTTTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATATGAGCCGATGTCCCAGACAG
* * *
105679310 GGTCTTACATGAAATCAAATATGATGCCGATGTCTCAGACAT
1 GGTCTTACATGTAATCAAATATGA-GCCGATGTCCCAGACAG
*
105679352 GGTCTTACACGTAA
1 GGTCTTACATGTAA
105679366 ATCTCAAATC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 22 0.47
42 25 0.53
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (41 bp):
GGTCTTACATGTAATCAAATATGAGCCGATGTCCCAGACAG
Found at i:105679360 original size:42 final size:40
Alignment explanation
Indices: 105679259--105679360 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
105679249 CAATGCCAAC
* * **
105679259 GTCTCAGACGTGGTCTTACATGTAATCAAATATGGCCTTT
1 GTCTCAGACATGGTCTTACATGAAATCAAATATGGCCGAT
* *
105679299 GTCCCAGACAGGGTCTTACATGAAATCAAATATGATGCCGAT
1 GTCTCAGACATGGTCTTACATGAAATCAAATATG--GCCGAT
105679341 GTCTCAGACATGGTCTTACA
1 GTCTCAGACATGGTCTTACA
105679361 CGTAAATCTC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 30 0.58
42 22 0.42
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (40 bp):
GTCTCAGACATGGTCTTACATGAAATCAAATATGGCCGAT
Found at i:105684178 original size:46 final size:45
Alignment explanation
Indices: 105684128--105684303 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
105684118 TGGTTGAGCA
105684128 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
105684174 TCCGAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
105684219 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
105684267 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105684304 GCGGGTTTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:105684284 original size:93 final size:93
Alignment explanation
Indices: 105684125--105684296 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
105684115 GGATGGTTGA
* * *
105684125 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
105684190 TGAGTCTGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
* *
105684218 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
105684283 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
105684297 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:105690853 original size:40 final size:40
Alignment explanation
Indices: 105690768--105690918 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
105690758 AATTGAATGA
* * *
105690768 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
105690808 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
105690849 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
105690888 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
105690919 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:105690932 original size:40 final size:40
Alignment explanation
Indices: 105690805--105690934 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
105690795 ATGCTGGAAA
* * * *
105690805 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
105690845 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
105690885 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
105690925 TTATATCCGG
1 TTATATCCGG
105690935 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:105698852 original size:38 final size:38
Alignment explanation
Indices: 105698761--105698909 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 38
105698751 AATTGAATGA
* * * **
105698761 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC--GAGATGC
* *
105698801 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-GC
*
105698839 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAG--ATGC
*
105698879 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
105698910 ACTGGTTATA
Statistics
Matches: 91, Mismatches: 11, Indels: 14
0.78 0.09 0.12
Matches are distributed among these distances:
37 4 0.04
38 29 0.32
40 54 0.59
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATGC
Found at i:105701668 original size:93 final size:93
Alignment explanation
Indices: 105701556--105701727 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105701546 GCCCATAAGT
* *
105701556 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105701621 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105701649 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105701714 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105701728 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105701723 original size:46 final size:46
Alignment explanation
Indices: 105701548--105701723 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
105701538 TGTAACCCGC
* * *
105701548 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105701594 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
105701644 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105701687 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105701724 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105704152 original size:30 final size:30
Alignment explanation
Indices: 105704108--105704196 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
105704098 CAAAGATAAC
105704108 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
105704137 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
105704167 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
105704197 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:105704156 original size:15 final size:15
Alignment explanation
Indices: 105704108--105704187 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
105704098 CAAAGATAAC
*
105704108 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
105704122 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
105704137 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
105704152 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
105704167 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
105704182 AAGAAA
1 AAGAAA
105704188 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:105704196 original size:15 final size:15
Alignment explanation
Indices: 105704119--105704196 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
105704109 AGAAAACCGA
105704119 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
105704134 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
105704148 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
105704163 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
105704179 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
105704194 ATA
1 ATA
105704197 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:105707257 original size:93 final size:93
Alignment explanation
Indices: 105707145--105707316 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105707135 GCCCATAAGT
* *
105707145 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105707210 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105707238 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105707303 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105707317 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105707312 original size:46 final size:46
Alignment explanation
Indices: 105707137--105707312 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
105707127 TGTAACCCGC
* * *
105707137 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105707183 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
105707233 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105707276 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105707313 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105710359 original size:49 final size:49
Alignment explanation
Indices: 105710294--105711242 Score: 1657
Period size: 49 Copynumber: 19.4 Consensus size: 49
105710284 TTTACCACAT
* *
105710294 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710343 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
105710392 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
105710441 ATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710490 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
105710539 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710588 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
105710637 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710686 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
105710735 ATATACA-ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
105710783 ATATATTCACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710832 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710881 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
105710930 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
105710979 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
105711028 ATATATACACACTTTCACATTCATCACATCGGCCATTACGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
105711077 ATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
105711126 ATATATGCACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
105711175 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
105711224 ATATATATACACTTTCACA
1 ATATATACACACTTTCACA
105711243 AATTTTAATA
Statistics
Matches: 853, Mismatches: 46, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
48 45 0.05
49 808 0.95
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:105714011 original size:30 final size:29
Alignment explanation
Indices: 105713975--105714038 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 29
105713965 ATGAATCGAA
105713975 AGCTTT-GACACTAAGTGTGCGATTTAAACT
1 AGCTTTGGA-ACTAAGTGTGCGATTT-AACT
105714005 AGCTTTGGAACTAAGTGTGCGATTTAACT
1 AGCTTTGGAACTAAGTGTGCGATTTAACT
105714034 AGCTT
1 AGCTT
105714039 CGATTACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 9 0.27
30 22 0.67
31 2 0.06
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (29 bp):
AGCTTTGGAACTAAGTGTGCGATTTAACT
Found at i:105722188 original size:93 final size:93
Alignment explanation
Indices: 105722076--105722247 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105722066 GCCCATAAGT
* *
105722076 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105722141 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105722169 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105722234 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105722248 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105722243 original size:46 final size:46
Alignment explanation
Indices: 105722068--105722243 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
105722058 TGTAACCCGC
* * *
105722068 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105722114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
105722164 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105722207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105722244 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105724296 original size:20 final size:21
Alignment explanation
Indices: 105724264--105724309 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
105724254 AGCACAAGTA
*
105724264 TTCA-TAAATTTTTAGAATTT
1 TTCATTAAATTTTTAGAACTT
*
105724284 TTCATTAAA-TTTTATAACTT
1 TTCATTAAATTTTTAGAACTT
105724304 TTCATT
1 TTCATT
105724310 TTAGTCCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (21 bp):
TTCATTAAATTTTTAGAACTT
Found at i:105731666 original size:65 final size:65
Alignment explanation
Indices: 105731562--105731690 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
105731552 CTCTGAGTAT
* * * * * *
105731562 GAGGTTGCATTTTTAGTACTGTATTTTACCTATAGATTGATGGTCAGTTTGAGTGAGATTCAGAC
1 GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGAC
105731627 GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGA
1 GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGA
105731691 TTTTTAATGG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.36
Consensus pattern (65 bp):
GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGAC
Found at i:105733668 original size:48 final size:49
Alignment explanation
Indices: 105733600--105734010 Score: 495
Period size: 48 Copynumber: 8.6 Consensus size: 49
105733590 TAAAGTACCA
* ** * ** *
105733600 ATGCCATGTCCCAGACATGGTCTTACATGAATC-CACATATCATTTCCA
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
*
105733648 ATGCCATGTCCCAGACATGGTCTTACA--ATGGCACATATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATCA-GGCACATATATCATCGCCG
* **
105733696 ATGCCATGTCCCAGACATGGTCTTACA-CTGGCACATATATCATCGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
* *
105733744 ATGCCATGTCCCAGACATGGTCGTACA-CAAGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
* * *
105733792 ATGCCATATCCTAGACAT-GTCTTACA-CAGGCACATATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
* *
105733839 ATGTCATGTCCCAGACATGGTCTTACAT-AGGCACATATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
* *
105733887 ATGCCATGTCCCAAACATGGTCTTACA-CAGGCACATATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
* *
105733935 ATGCCATGTCCCCGACATGGTCTTACAT-AGGCACACT-TCTCGGAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACATCAGGCACA-TATATC--ATCGCCG
*
105733984 ATGCCATGTCCCAGACATGGACTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
105734011 CGGAATCTCA
Statistics
Matches: 321, Mismatches: 32, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.00
47 42 0.13
48 247 0.77
49 29 0.09
50 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACATCAGGCACATATATCATCGCCG
Found at i:105752327 original size:40 final size:40
Alignment explanation
Indices: 105752250--105752510 Score: 366
Period size: 40 Copynumber: 6.6 Consensus size: 40
105752240 AAACCAAGTA
* * *
105752250 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
105752289 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
105752329 CCTTCGGGACTTAGCCCGGATATAGTAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
105752369 CCTTCGGGACTTAGCCCAGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
105752409 CCTTCAGGACATAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
105752449 CCTTCGGGACTTAGCCCGGTAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
105752489 -CTTCGGGACTTAGCCCTGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
105752511 CATCCGAATA
Statistics
Matches: 199, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.17
40 165 0.83
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:105756344 original size:40 final size:39
Alignment explanation
Indices: 105756163--105756314 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
105756153 AATGTTCGAG
105756163 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
105756202 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
105756241 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
105756280 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
105756315 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:105763742 original size:40 final size:40
Alignment explanation
Indices: 105763665--105763926 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
105763655 AAACCATGTA
* * *
105763665 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
105763704 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * *
105763744 CCTTTGGGACTTAGCCCGGATATAGTAACTTGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
105763784 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
105763824 CCTTCGAGACTTAGCGCGGTTATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
105763864 CCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
105763904 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
105763927 CATCCGAATA
Statistics
Matches: 202, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 14 0.07
40 188 0.93
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:105768553 original size:39 final size:40
Alignment explanation
Indices: 105768507--105768643 Score: 145
Period size: 39 Copynumber: 3.5 Consensus size: 40
105768497 ATTATATCTA
*
105768507 GACTTAAAGTCTGCAGGCTATATGCGGGAAATATATTC-G
1 GACTTAAAGTCCGCAGGCTATATGCGGGAAATATATTCAG
* * *
105768546 GACTTAAAGTCCGTAGGCTATATACGGGAAATATA-TCTG
1 GACTTAAAGTCCGCAGGCTATATGCGGGAAATATATTCAG
* * * ** *
105768585 GACTTCAGGTCCGCAGGCTATGTGCTAGAAATATATCCAG
1 GACTTAAAGTCCGCAGGCTATATGCGGGAAATATATTCAG
*
105768625 G-CTTAAAGTACCGAAGGCT
1 GACTTAAAGT-CCGCAGGCT
105768644 TAGTGCTAGT
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
38 2 0.03
39 67 0.84
40 11 0.14
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (40 bp):
GACTTAAAGTCCGCAGGCTATATGCGGGAAATATATTCAG
Found at i:105768630 original size:78 final size:79
Alignment explanation
Indices: 105768499--105768643 Score: 186
Period size: 78 Copynumber: 1.8 Consensus size: 79
105768489 ATTTGAAAAT
* * * *
105768499 TATATCTAGACTTAAAGTCTGCAGGCTATATGCGGGAAATATATTCGGACTTAAAGT-CCGTAGG
1 TATATCTAGACTTAAAGTCCGCAGGCTATATGCGAGAAATATATCCGGACTTAAAGTACCGAAGG
105768563 CTATATACGGGAAA
66 CTATATACGGGAAA
* * * * *
105768577 TATATCTGGACTTCAGGTCCGCAGGCTATGTGCTAGAAATATATCCAGG-CTTAAAGTACCGAAG
1 TATATCTAGACTTAAAGTCCGCAGGCTATATGCGAGAAATATATCC-GGACTTAAAGTACCGAAG
105768641 GCT
65 GCT
105768644 TAGTGCTAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
78 46 0.82
79 10 0.18
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (79 bp):
TATATCTAGACTTAAAGTCCGCAGGCTATATGCGAGAAATATATCCGGACTTAAAGTACCGAAGG
CTATATACGGGAAA
Found at i:105775353 original size:39 final size:39
Alignment explanation
Indices: 105775296--105775432 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
105775286 ATTTGAAAAT
* *
105775296 TATATCTGGACTTGAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCGGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
105775335 TATATTGGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCGGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * * * *
105775374 TATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAAA
1 TATATCGGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
105775413 TATATCCGGG-CTTAAAGTCC
1 TATAT-CGGGACTTAAAGTCC
105775433 CGAAGGCTTA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 82 0.96
40 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCGGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
Found at i:105781438 original size:13 final size:13
Alignment explanation
Indices: 105781420--105781446 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
105781410 GGAGGAATCG
105781420 CACACGGGCGTGT
1 CACACGGGCGTGT
105781433 CACACGGGCGTGT
1 CACACGGGCGTGT
105781446 C
1 C
105781447 CCTGCCGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:105786591 original size:39 final size:38
Alignment explanation
Indices: 105786548--105786713 Score: 156
Period size: 39 Copynumber: 4.2 Consensus size: 38
105786538 CGGGACTTTA
* *
105786548 CCCGGATATCACGATTTGCACAAATGCCTTCGGTCTTAG
1 CCCGGATAT-ACAACTTGCACAAATGCCTTCGGTCTTAG
* *
105786587 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATAT-ACAACTTGCACAAATGCCTTC-GGTCTTAG
* * * *
105786627 CCCGGATATAGCTACTAGCACAATTGCCTTCGGTCTTAA
1 CCCGGATATA-CAACTTGCACAAATGCCTTCGGTCTTAG
* * *
105786666 CCCGGATATA-AA-TTTCAGCATAATTGTCTTCGGGCTTAG
1 CCCGGATATACAACTTGCA-CA-AA-TGCCTTCGGTCTTAG
105786705 CCCGGATAT
1 CCCGGATAT
105786714 CATTCAATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
36 3 0.03
37 3 0.03
38 1 0.01
39 65 0.62
40 32 0.31
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (38 bp):
CCCGGATATACAACTTGCACAAATGCCTTCGGTCTTAG
Found at i:105786655 original size:40 final size:39
Alignment explanation
Indices: 105786565--105786713 Score: 158
Period size: 39 Copynumber: 3.8 Consensus size: 39
105786555 ATCACGATTT
* * * *
105786565 GCACAAATGCCTTCGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGTCTTAGCCCGGATATAACTACTA
*
105786604 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTC-GGTCTTAGCCCGGATATAACTACTA
* * *
105786644 GCACAATTGCCTTCGGTCTTAACCCGGATATAAAT-TTCA
1 GCACAATTGCCTTCGGTCTTAGCCCGGATATAACTACT-A
* * *
105786683 GCATAATTGTCTTCGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGTCTTAGCCCGGATAT
105786714 CATTCAATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 59 0.63
40 34 0.36
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (39 bp):
GCACAATTGCCTTCGGTCTTAGCCCGGATATAACTACTA
Found at i:105787558 original size:17 final size:19
Alignment explanation
Indices: 105787535--105787580 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
105787525 AAGAAGCATG
105787535 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
105787553 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
105787571 AATCATGCTC
1 AATCATGCTC
105787581 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:105792495 original size:40 final size:40
Alignment explanation
Indices: 105792450--105792616 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
105792440 CGGAATATAA
105792450 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
105792490 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
105792530 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
105792570 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
105792609 CCGGATAT
1 CCGGATAT
105792617 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:105792600 original size:80 final size:79
Alignment explanation
Indices: 105792466--105792616 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
105792456 ATAATCACGT
*
105792466 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
105792531 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
105792546 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
105792609 CCGGATAT
64 CCGGATAT
105792617 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:105793464 original size:17 final size:19
Alignment explanation
Indices: 105793441--105793486 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
105793431 AAGAAGCATG
105793441 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
105793459 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
105793477 AATCATGCTC
1 AATCATGCTC
105793487 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:105800499 original size:40 final size:40
Alignment explanation
Indices: 105800454--105800620 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
105800444 CGGAATATAA
105800454 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
105800494 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
105800534 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
105800574 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
105800613 CCGGATAT
1 CCGGATAT
105800621 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:105800604 original size:80 final size:79
Alignment explanation
Indices: 105800470--105800620 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
105800460 ATAATCACGT
*
105800470 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
105800535 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
105800550 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
105800613 CCGGATAT
64 CCGGATAT
105800621 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:105801469 original size:17 final size:19
Alignment explanation
Indices: 105801446--105801491 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
105801436 AAGAAGCATG
105801446 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
105801464 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
105801482 AATCATGCTC
1 AATCATGCTC
105801492 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:105806971 original size:96 final size:95
Alignment explanation
Indices: 105806849--105807031 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 95
105806839 GGATCAAAGC
**
105806849 CACTAACCTTATCTCCCTGAAGATGCAGTAGAGTAGGTCGAAGATAGCTAA-TCTTATTTCTCTG
1 CACTAACCTTATCTCCCTGAAGATGCAGTAGAGTAGGTCGAAGATA-C-AAGTCTTACCTCTCTG
*
105806913 AAGTTGCAATGGGGCAGATTGAAGCTACAAAT
64 AAGTTGCAATGGAGCAGATTGAAGCTACAAAT
* * * * *
105806945 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGTTACAAGTCTTACCTCTTTGAA
1 CACTAACCTTATCTCCCTGAAGATGCAGTAGAGTAGGTCGAAGATACAAGTCTTACCTCTCTGAA
*
105807010 GTTGCAGTGGAGCAGATTGAAG
66 GTTGCAATGGAGCAGATTGAAG
105807032 ATGGCGAATT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
94 2 0.03
95 33 0.43
96 42 0.55
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (95 bp):
CACTAACCTTATCTCCCTGAAGATGCAGTAGAGTAGGTCGAAGATACAAGTCTTACCTCTCTGAA
GTTGCAATGGAGCAGATTGAAGCTACAAAT
Found at i:105806986 original size:51 final size:50
Alignment explanation
Indices: 105806849--105806993 Score: 122
Period size: 51 Copynumber: 3.0 Consensus size: 50
105806839 GGATCAAAGC
* * *
105806849 CACTAACCTTATCTCCCTGAAGATGCAGTAGAGTAGGTCGAAGATAGC--T
1 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATA-CAAT
* * * * * * * *
105806898 -A--AT-CTTATTTCTCTGAAGTTGCAATGGGGCAGATTGAAGCTACAAAT
1 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATAC-AAT
*
105806945 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGTTACAA
1 CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATACAA
105806994 GTCTTACCTC
Statistics
Matches: 70, Mismatches: 19, Indels: 13
0.69 0.19 0.13
Matches are distributed among these distances:
44 1 0.01
45 29 0.41
46 1 0.01
47 1 0.01
48 2 0.03
50 4 0.06
51 32 0.46
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (50 bp):
CACTATCCTTATCTCCCTGAAGATGCAGTGGAGTAGGTTGAAGATACAAT
Found at i:105807072 original size:45 final size:44
Alignment explanation
Indices: 105807006--105807169 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 44
105806996 CTTACCTCTT
* *
105807006 TGAAGTTGCAGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCC
1 TGAAGTTGCAGTGAAGTAGATTGAAGAT-GCGAATTTTATCTTCC
* * *
105807051 TGAAGTTGCAGTGAAGTAGATTAAAGCCAT-C-AATCTTATCTCCC
1 TGAAGTTGCAGTGAAGTAGATTGAAG--ATGCGAATTTTATCTTCC
* *
105807095 T-AAGGTCGCAGTGGAGTAGTGGATCAAATTGAAGATGACGAATTTTATCTTCC
1 TGAA-GTTGCAGT-GA--A---G-T-AGATTGAAGATG-CGAATTTTATCTTCC
105807148 TGAAGTTGCAGTGAAGTAGATT
1 TGAAGTTGCAGTGAAGTAGATT
105807170 AAAGCCATCA
Statistics
Matches: 92, Mismatches: 12, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
43 2 0.02
44 19 0.21
45 30 0.33
46 1 0.01
47 4 0.04
50 4 0.04
51 1 0.01
52 10 0.11
53 19 0.21
54 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (44 bp):
TGAAGTTGCAGTGAAGTAGATTGAAGATGCGAATTTTATCTTCC
Found at i:105807107 original size:44 final size:44
Alignment explanation
Indices: 105807042--105807209 Score: 133
Period size: 44 Copynumber: 3.6 Consensus size: 44
105807032 ATGGCGAATT
*
105807042 TTATCTTCCTGAA-GTTGCAGTGAAGTAGATTAAAGCCATCAATC
1 TTATCTTCCT-AAGGTCGCAGTGAAGTAGATTAAAGCCATCAATC
* * * ** *
105807086 TTATCTCCCTAAGGTCGCAGTGGAGTAGTGGATCAAATTGAAGATGACGAATT
1 TTATCTTCCTAAGGTCGCAGT-GA--AGTAGATTAAA--G-CCAT--C-AATC
*
105807139 TTATCTTCCTGAA-GTTGCAGTGAAGTAGATTAAAGCCATCAATC
1 TTATCTTCCT-AAGGTCGCAGTGAAGTAGATTAAAGCCATCAATC
* *
105807183 TTATCTTCCTAAGGTCGTAGTGGAGTA
1 TTATCTTCCTAAGGTCGCAGTGAAGTA
105807210 CTGGAACAGA
Statistics
Matches: 95, Mismatches: 17, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
43 4 0.04
44 40 0.42
45 3 0.03
47 11 0.12
48 1 0.01
49 1 0.01
50 11 0.12
52 3 0.03
53 19 0.20
54 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (44 bp):
TTATCTTCCTAAGGTCGCAGTGAAGTAGATTAAAGCCATCAATC
Found at i:105807181 original size:97 final size:97
Alignment explanation
Indices: 105807015--105807225 Score: 359
Period size: 97 Copynumber: 2.2 Consensus size: 97
105807005 TTGAAGTTGC
* *
105807015 AGTGGAGCAGATTGAAGATGGCGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
1 AGTGGAACAGATTGAAGATGACGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
105807080 TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
66 TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
* *
105807112 AGTGGATCAAATTGAAGATGACGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
1 AGTGGAACAGATTGAAGATGACGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
* *
105807177 TCAATCTTATCTTCCTAAGGTCGTAGTGGAGT
66 TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
*
105807209 ACTGGAACAGATTGAAG
1 AGTGGAACAGATTGAAG
105807226 CTATAAATTA
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 106 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (97 bp):
AGTGGAACAGATTGAAGATGACGAATTTTATCTTCCTGAAGTTGCAGTGAAGTAGATTAAAGCCA
TCAATCTTATCTCCCTAAGGTCGCAGTGGAGT
Found at i:105807297 original size:41 final size:41
Alignment explanation
Indices: 105807251--105807392 Score: 135
Period size: 41 Copynumber: 3.4 Consensus size: 41
105807241 CTTATTTCTC
* *
105807251 TGAAGTTGCAGCAAAATAGATCAAAACAAGTCTTATCTCCT
1 TGAAGTTGCAGTAGAATAGATCAAAACAAGTCTTATCTCCT
* * ** * *
105807292 TGAAGTTGCAATGGAGCAGGTCAAAA-ATAGCCGATCTTAT-TTCT
1 TGAAGTTGCAGTAGAATAGATCAAAACA-A---G-TCTTATCTCCT
105807336 CTGAAGTTGCAGTAGAATAGATCAAAACAAGTCTTATCTCCT
1 -TGAAGTTGCAGTAGAATAGATCAAAACAAGTCTTATCTCCT
*
105807378 TGAAGTTGCAATAGA
1 TGAAGTTGCAGTAGA
105807393 TCTTATCTCT
Statistics
Matches: 78, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
40 1 0.01
41 40 0.51
42 4 0.05
44 4 0.05
45 28 0.36
46 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (41 bp):
TGAAGTTGCAGTAGAATAGATCAAAACAAGTCTTATCTCCT
Found at i:105809550 original size:2 final size:2
Alignment explanation
Indices: 105809538--105809577 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
105809528 CCCTAAATTA
*
105809538 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105809578 GCACATACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105809838 original size:2 final size:2
Alignment explanation
Indices: 105809833--105809869 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
105809823 ACACACTTCT
105809833 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
105809870 TATGTATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:105809906 original size:28 final size:27
Alignment explanation
Indices: 105809866--105809918 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 27
105809856 ATATATATAT
105809866 ATATTATGTATTTTAAAATTATTTTTAC
1 ATATTATGTATTTTAAAATT-TTTTTAC
105809894 ATATTAAT-TATTTTAAAATTTTTTT
1 ATATT-ATGTATTTTAAAATTTTTTT
105809919 CCAGATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 5 0.21
28 17 0.71
29 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
ATATTATGTATTTTAAAATTTTTTTAC
Found at i:105809931 original size:25 final size:27
Alignment explanation
Indices: 105809868--105809931 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
105809858 ATATATATAT
*
105809868 ATTATGTATTTTAAAATTATTTTTACAT
1 ATTATG-ATTTTAAAATTATTTTTACAG
* *
105809896 ATTAATTATTTTAAAATT-TTTTTCCAG
1 ATT-ATGATTTTAAAATTATTTTTACAG
105809923 A-TATGATTT
1 ATTATGATTT
105809932 ATTTTAAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
25 6 0.19
26 1 0.03
27 8 0.26
28 14 0.45
29 2 0.06
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (27 bp):
ATTATGATTTTAAAATTATTTTTACAG
Found at i:105809936 original size:29 final size:28
Alignment explanation
Indices: 105809874--105809939 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
105809864 ATATATTATG
*
105809874 TATTTTAAAATTATTTTTACATATTAAT
1 TATTTTAAAATTATTTTTACATATGAAT
* *
105809902 TATTTTAAAATT-TTTTTCCAGATATGATT
1 TATTTTAAAATTATTTTT--ACATATGAAT
105809931 TATTTTAAA
1 TATTTTAAA
105809940 TCTTTGTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 5 0.15
28 12 0.36
29 16 0.48
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (28 bp):
TATTTTAAAATTATTTTTACATATGAAT
Found at i:105810032 original size:27 final size:25
Alignment explanation
Indices: 105810002--105810054 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
105809992 ATTTTATATG
105810002 TTATTTACTTTAAAAATTTCTTATACA
1 TTATTTA-TTT-AAAATTTCTTATACA
* *
105810029 TTATTTATTTTAAATTTCTTTTACA
1 TTATTTATTTAAAATTTCTTATACA
105810054 T
1 T
105810055 ATTGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
26 3 0.12
27 7 0.29
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.58
Consensus pattern (25 bp):
TTATTTATTTAAAATTTCTTATACA
Found at i:105815193 original size:26 final size:26
Alignment explanation
Indices: 105815142--105815194 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
105815132 CATTTTAAAA
* *
105815142 TTGTTTTACATCTTATTCATTTTTAT
1 TTGTTTTACATCTTATTAATTATTAT
*
105815168 TTGTTTTACA-CTTTTTAAATTATTAT
1 TTGTTTTACATCTTATT-AATTATTAT
105815194 T
1 T
105815195 AAATTCGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (26 bp):
TTGTTTTACATCTTATTAATTATTAT
Found at i:105822072 original size:16 final size:16
Alignment explanation
Indices: 105822051--105822081 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105822041 GTAATGCCCC
105822051 AAAAATCCCGAAATCG
1 AAAAATCCCGAAATCG
*
105822067 AAAAATCTCGAAATC
1 AAAAATCCCGAAATC
105822082 TTGAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.23, G:0.10, T:0.16
Consensus pattern (16 bp):
AAAAATCCCGAAATCG
Found at i:105823360 original size:16 final size:16
Alignment explanation
Indices: 105823318--105823360 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
105823308 GTAGATCGAC
*
105823318 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATACCA
* *
105823334 AAAACCCGAAATACCG
1 AAAAGCCGAAATACCA
*
105823350 AAAAGCTGAAA
1 AAAAGCCGAAA
105823361 GTTTGGCTGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.23, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATACCA
Found at i:105823644 original size:29 final size:29
Alignment explanation
Indices: 105823580--105823646 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
105823570 GAATATAAAG
* * ** *
105823580 GTGATTTGGGCCTAATGGTGCATATGCAT
1 GTGAATTGGCCCTAATGGACCATATGAAT
* *
105823609 ATTAATTGGCCCTAATGGACCATATGAAT
1 GTGAATTGGCCCTAATGGACCATATGAAT
105823638 GTGAATTGG
1 GTGAATTGG
105823647 GCCTGATAGG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (29 bp):
GTGAATTGGCCCTAATGGACCATATGAAT
Found at i:105826588 original size:16 final size:16
Alignment explanation
Indices: 105826557--105826590 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105826547 GTTGTAACGC
* *
105826557 CCCAAAAATTTTGAAA
1 CCCAAAAATCTAGAAA
105826573 CCCAAAAATCTAGAAA
1 CCCAAAAATCTAGAAA
105826589 CC
1 CC
105826591 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.26, G:0.06, T:0.18
Consensus pattern (16 bp):
CCCAAAAATCTAGAAA
Found at i:105827851 original size:16 final size:16
Alignment explanation
Indices: 105827826--105827868 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
105827816 GTAGATCGGC
105827826 AAAAGTCGAAATG-CGA
1 AAAAGTCGAAATGTC-A
*
105827842 AAAAGACGAAATGTCA
1 AAAAGTCGAAATGTCA
105827858 AAAAGTCGAAA
1 AAAAGTCGAAA
105827869 GTTTGGCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 23 0.96
17 1 0.04
ACGTcount: A:0.56, C:0.12, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGTCGAAATGTCA
Found at i:105828126 original size:29 final size:29
Alignment explanation
Indices: 105828093--105828199 Score: 112
Period size: 29 Copynumber: 3.7 Consensus size: 29
105828083 TAAAGGTGAT
*
105828093 TTGGGCCTAATGGGGCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
* * *
105828122 TTGGGCTTGATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
** *
105828151 TTGGGCCTGGTAGGCCATAT-AA-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATATGA-A
105828179 TTGGGCC-AAGTGGGCCATATG
1 TTGGGCCTAA-TGGGCCATATG
105828200 CATGTATGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
27 3 0.05
28 19 0.30
29 42 0.66
ACGTcount: A:0.26, C:0.13, G:0.34, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:105828194 original size:28 final size:29
Alignment explanation
Indices: 105828132--105828198 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
105828122 TTGGGCTTGA
* * **
105828132 TGGGCCATATGAATGTGAATTGGGCCTGG
1 TGGGCCATATAAATGAGAATTGGGCCAAG
*
105828161 TAGGCCATATAAATGAG-ATTGGGCCAAG
1 TGGGCCATATAAATGAGAATTGGGCCAAG
105828189 TGGGCCATAT
1 TGGGCCATAT
105828199 GCATGTATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGGCCATATAAATGAGAATTGGGCCAAG
Found at i:105836260 original size:18 final size:19
Alignment explanation
Indices: 105836237--105836275 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
105836227 TTTATCTCAA
*
105836237 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
105836255 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
105836274 TT
1 TT
105836276 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:105836313 original size:30 final size:30
Alignment explanation
Indices: 105836269--105836327 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
105836259 TTGTTCACAT
**
105836269 TCTTTTTCTCTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
***
105836299 TCTTTTTCAATCTCATTTTCTTTTTCATT
1 TCTTTTTCAATCTCAAACTCTTTTTCATT
105836328 TTGTTTTTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.25, G:0.00, T:0.61
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:105836443 original size:17 final size:16
Alignment explanation
Indices: 105836406--105836458 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 16
105836396 TTTGCCTCTC
105836406 TTTTCTTTT-TATTTCAT
1 TTTTCTTTTCT-TTTC-T
*
105836423 TTTTTTTATTCTTTTGCT
1 TTTTCTT-TTCTTTT-CT
105836441 TTTTCTTTTCTTTTCT
1 TTTTCTTTTCTTTTCT
105836457 TT
1 TT
105836459 GTTTCCTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
16 4 0.13
17 13 0.42
18 12 0.39
19 2 0.06
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTCTTTTCTTTTCT
Found at i:105838928 original size:21 final size:20
Alignment explanation
Indices: 105838887--105838936 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
105838877 GAAGTAGGAA
*
105838887 TGAGCTAAAACGAGCTAAAT
1 TGAGCTCAAACGAGCTAAAT
* * *
105838907 TCGATCTCAAACGAGTTGAAT
1 T-GAGCTCAAACGAGCTAAAT
105838928 TGAGCTCAA
1 TGAGCTCAA
105838937 GTGAGCTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (20 bp):
TGAGCTCAAACGAGCTAAAT
Found at i:105842582 original size:46 final size:46
Alignment explanation
Indices: 105842519--105842638 Score: 231
Period size: 46 Copynumber: 2.6 Consensus size: 46
105842509 ACATCTCACA
*
105842519 AACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
105842565 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
105842611 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
105842639 TGCCCAAATA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
Found at i:105845404 original size:15 final size:15
Alignment explanation
Indices: 105845386--105845424 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
105845376 TCTAAGATTG
105845386 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
*
105845401 AGAAATCCAGAATAA
1 AGAAACCCAGAATAA
105845416 AGAAACCCA
1 AGAAACCCA
105845425 AGATACGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.59, C:0.21, G:0.13, T:0.08
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:105845420 original size:30 final size:30
Alignment explanation
Indices: 105845356--105845424 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
105845346 TAAAGAGAAC
* * *
105845356 AAGAAAACC-GAATAAAGAAATCTAAGATT
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
105845385 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
105845415 AAGAAACCCA
1 AAGAAACCCA
105845425 AGATACGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.58, C:0.16, G:0.14, T:0.12
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:105848145 original size:46 final size:46
Alignment explanation
Indices: 105848078--105848301 Score: 251
Period size: 46 Copynumber: 4.8 Consensus size: 46
105848068 TGTAACCCAC
* * *
105848078 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGA-GTTTGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGATGTTTGCAT
*
105848124 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG--T--TTGCAT
* * *
105848174 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTTGCAT
* * * *
105848217 CCATAAGTGAACTCGGACTCAATTCAACGAGTTAGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTTGCAT
*
105848263 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
105848302 CCCAAATATC
Statistics
Matches: 153, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
42 2 0.01
43 7 0.05
45 4 0.03
46 103 0.67
47 28 0.18
48 1 0.01
50 6 0.04
51 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTTGCAT
Found at i:105848255 original size:93 final size:93
Alignment explanation
Indices: 105848087--105848255 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
105848077 CCCATAAGCG
*
105848087 AACTCAGACTCAACTCAACGAGCTCGGGAGTTTGTATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGGAGTTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
105848152 GAGCTCGGATGCCTAGTTACATCTCACA
66 GAGCTAGGATGCCTAGTTACATCTCACA
* * *
105848180 AACTCGGACTCAACTCAACGAGTTC-GGACGTTTGCATCCATAAGTGAACTCGGACTCAATTCAA
1 AACTCAGACTCAACTCAACGAGCTCGGGA-GTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
*
105848244 CGAGTTAGGATG
65 CGAGCTAGGATG
105848256 TTCGCATCCA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 66 0.96
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGGAGTTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTAGGATGCCTAGTTACATCTCACA
Found at i:105860182 original size:23 final size:23
Alignment explanation
Indices: 105860156--105860207 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
105860146 GAAAATAATC
*
105860156 AACAGAATAGCTAATGGCATAAA
1 AACAGAATAGCTAATAGCATAAA
105860179 AACAGAATAGCTAATAGCATAAA
1 AACAGAATAGCTAATAGCATAAA
105860202 AACAGA
1 AACAGA
105860208 TCCAAGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.56, C:0.13, G:0.15, T:0.15
Consensus pattern (23 bp):
AACAGAATAGCTAATAGCATAAA
Found at i:105865390 original size:32 final size:32
Alignment explanation
Indices: 105865354--105865414 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
105865344 TTAGATATTA
105865354 ATTATGTT-TCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTCT-AAGCTTGTTAGATATTGAATTT
*
105865386 ATTATGTTCTAAGCTTGTTGGATATTGAA
1 ATTATGTTCTAAGCTTGTTAGATATTGAA
105865415 ATGATTGACA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.48
Consensus pattern (32 bp):
ATTATGTTCTAAGCTTGTTAGATATTGAATTT
Found at i:105866847 original size:19 final size:20
Alignment explanation
Indices: 105866823--105866864 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
105866813 CAAACACCAA
105866823 AAAAGTAAATCA-TTTCCAG
1 AAAAGTAAATCATTTTCCAG
105866842 AAAAGTAAATCATTTTCCAG
1 AAAAGTAAATCATTTTCCAG
105866862 AAA
1 AAA
105866865 TCATTTCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCCAG
Found at i:105870583 original size:37 final size:37
Alignment explanation
Indices: 105870541--105870621 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
105870531 TGGGGTTTTA
* *
105870541 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
*
105870578 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
105870615 ACCCGGA
1 ACCCGGA
105870622 ATATATTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
Found at i:105870880 original size:48 final size:48
Alignment explanation
Indices: 105870780--105870904 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
105870770 TATTGCACAA
* * *
105870780 TAGCCATTCGGCTTTACCAAATATACAT-CCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
105870827 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
105870875 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
105870905 ATTTACCTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
47 26 0.38
48 43 0.62
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
Found at i:105874750 original size:40 final size:40
Alignment explanation
Indices: 105874706--105875007 Score: 301
Period size: 40 Copynumber: 7.9 Consensus size: 40
105874696 GAATACACAT
* *
105874706 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
1 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * *
105874746 CACCGGCACGAA-ACCCTTCGGGATTTAGCCCGG--AT-A
1 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* *
105874782 CATCTAGCACGAATGCTCTT-----C--AGCCCGGATATAA
1 CA-CCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * *
105874816 CACC-GACACGAATG-CCTTCGGGATTTAGCCCGGATACAT
1 CACCAG-CACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* *
105874855 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * *
105874895 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * *
105874935 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* *
105874975 CACTAGCACGATTG-CCTTCGGG-CTTAGCCCGGA
1 CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGA
105875008 ATTAGTAACT
Statistics
Matches: 220, Mismatches: 27, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
31 7 0.03
32 4 0.02
33 11 0.05
34 3 0.01
36 3 0.01
37 10 0.05
38 15 0.07
39 49 0.22
40 118 0.54
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
Found at i:105874938 original size:80 final size:79
Alignment explanation
Indices: 105874803--105875007 Score: 340
Period size: 80 Copynumber: 2.6 Consensus size: 79
105874793 AATGCTCTTC
* *
105874803 AGCCCGGATATAACACCGACACGAATGCCTTCGGGATTTAGCCCGGATACATCACTAGCACGAAT
1 AGCCCGGATATAACACCGGCACGAATGCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
105874868 GCTCTTCGGGACTT
66 GCTCTTCGGGACTT
105874882 AGCCCGGATATAACACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 AGCCCGGATATAACACCGGCACGAATG-CCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
105874947 TGCTCTTCGGGACTT
65 TGCTCTTCGGGACTT
* ** *
105874962 AGCCCGGATATATCACTAGCACGATTGCCTTCGGG-CTTAGCCCGGA
1 AGCCCGGATATAACACCGGCACGAATGCCTTCGGGACTTAGCCCGGA
105875008 ATTAGTAACT
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
78 11 0.09
79 34 0.29
80 74 0.62
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (79 bp):
AGCCCGGATATAACACCGGCACGAATGCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
GCTCTTCGGGACTT
Found at i:105875028 original size:39 final size:38
Alignment explanation
Indices: 105874828--105875046 Score: 178
Period size: 40 Copynumber: 5.5 Consensus size: 38
105874818 CCGACACGAA
* * *
105874828 TGCCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA-
1 TGCCTTCGGG-CTTAGCCCGGATATATAACTAGCAC-AAT
**
105874867 TGCTCTTCGGGACTTAGCCCGGATATA-ACACCGGCACGAA-
1 TGC-CTTCGGG-CTTAGCCCGGATATATA-ACTAGCAC-AAT
* *
105874907 TGCCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA-
1 TG-CCTTCGGG-CTTAGCCCGGATATATAACTAGCAC-AAT
* *
105874947 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAT
1 TGC-CTTCGGG-CTTAGCCCGGATATATAACTAGCACAAT
*
105874987 TGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATA-TA-TAACTAGCACAAT
*
105875026 TGCCTTCGAGACTTAGCCCGG
1 TGCCTTCG-GGCTTAGCCCGG
105875047 TTATCATCCG
Statistics
Matches: 156, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 30 0.19
40 111 0.71
41 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (38 bp):
TGCCTTCGGGCTTAGCCCGGATATATAACTAGCACAAT
Found at i:105877327 original size:37 final size:37
Alignment explanation
Indices: 105877285--105877365 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
105877275 CTGGGTTTTA
* *
105877285 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
*
105877322 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
105877359 ACCCGGA
1 ACCCGGA
105877366 ATATATTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
Found at i:105877617 original size:48 final size:48
Alignment explanation
Indices: 105877522--105877641 Score: 177
Period size: 48 Copynumber: 2.5 Consensus size: 48
105877512 TATTGCACAA
* * *
105877522 TAGCCATTCGGCTTTACCAAAATATACATCCCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACC-ACATATACATACCTCATACATATCTCATAT
* * *
105877571 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATACCTCATACATATCTCATAT
105877619 TAGCCATTCGGCTTTACCACATA
1 TAGCCATTCGGCTTTACCACATA
105877642 ATATATTTAC
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
48 47 0.73
49 17 0.27
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATACCTCATACATATCTCATAT
Found at i:105885884 original size:30 final size:30
Alignment explanation
Indices: 105885848--105886006 Score: 204
Period size: 30 Copynumber: 5.5 Consensus size: 30
105885838 GACAAGATTG
* * * * *
105885848 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
105885878 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
105885906 -CACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
105885934 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
105885964 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
105885993 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
105886007 GATTCACTAT
Statistics
Matches: 118, Mismatches: 5, Indels: 13
0.87 0.04 0.10
Matches are distributed among these distances:
26 2 0.02
27 15 0.13
28 12 0.10
29 43 0.36
30 44 0.37
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:105885981 original size:59 final size:57
Alignment explanation
Indices: 105885848--105886006 Score: 205
Period size: 59 Copynumber: 2.8 Consensus size: 57
105885838 GACAAGATTG
* * * * * *
105885848 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
105885906 -CACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
105885964 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
105886007 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
55 2 0.02
56 20 0.22
57 19 0.21
58 7 0.08
59 42 0.47
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:105889265 original size:20 final size:20
Alignment explanation
Indices: 105889242--105889285 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
105889232 AAACAGTTAT
105889242 TGTTTTGGAAATGAAAATCG
1 TGTTTTGGAAATGAAAATCG
105889262 TGTTTTGGAAATGAAAATCG
1 TGTTTTGGAAATGAAAATCG
105889282 TGTT
1 TGTT
105889286 CTACTCCAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.39
Consensus pattern (20 bp):
TGTTTTGGAAATGAAAATCG
Found at i:105889942 original size:22 final size:22
Alignment explanation
Indices: 105889891--105889945 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
105889881 ACACAAGTCA
*
105889891 ACAGGATAGCTCAATGCCGTAG
1 ACAGGATGGCTCAATGCCGTAG
*
105889913 ACAGGATGGCTCAATGCTGTAG
1 ACAGGATGGCTCAATGCCGTAG
105889935 ACAGGATGGCT
1 ACAGGATGGCT
105889946 AAAGGCCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (22 bp):
ACAGGATGGCTCAATGCCGTAG
Found at i:105890034 original size:21 final size:25
Alignment explanation
Indices: 105889981--105890040 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 25
105889971 CTGGTAGTTA
105889981 ACAGAAAGGCTATAAGCCATAAGTATC
1 ACAGAAAGGCTATAAGCCAT-A-TATC
105890008 ACAGAAAGGCTA-AAGCC-T-TAT-
1 ACAGAAAGGCTATAAGCCATATATC
*
105890029 ACAGAACGGCTA
1 ACAGAAAGGCTA
105890041 CAGGCCGTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 11 0.34
22 3 0.09
25 1 0.03
26 5 0.16
27 12 0.38
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.17
Consensus pattern (25 bp):
ACAGAAAGGCTATAAGCCATATATC
Found at i:105893996 original size:27 final size:27
Alignment explanation
Indices: 105893966--105894027 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
105893956 GGGCAAAATG
105893966 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
105893993 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
105894020 GTAATTTT
1 GTAATTTT
105894028 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:105894040 original size:27 final size:27
Alignment explanation
Indices: 105894010--105894140 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
105894000 TACCCTACAG
* *
105894010 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
105894037 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
105894064 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
105894091 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
105894118 GGGTATTTTGGTAATTCTATAAA
1 GGGTATTTTGGTAATTTTATAAA
105894141 TTGAAGGTAA
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 88 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:105894041 original size:54 final size:54
Alignment explanation
Indices: 105893983--105894133 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
105893973 TACCCCACAA
** * * *
105893983 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * *
105894037 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
105894091 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
105894134 CTATAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.02
54 82 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:105894099 original size:81 final size:81
Alignment explanation
Indices: 105893981--105894140 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
105893971 TTTACCCCAC
** *
105893981 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
*
105894045 TGGTAATTTTATAAACA
65 TGGTAATTCTATAAACA
* * *
105894062 AAGGGTATTTTAGTAATTTTA-CAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAAC-AGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
105894126 TGGTAATTCTATAAA
65 TGGTAATTCTATAAA
105894141 TTGAAGGTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 3 0.04
81 66 0.94
82 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTCTATAAACA
Found at i:105894390 original size:27 final size:28
Alignment explanation
Indices: 105894126--105894376 Score: 322
Period size: 27 Copynumber: 9.3 Consensus size: 28
105894116 AAGGGTATTT
* * *
105894126 TGGTAATTCTATAAA-TTGAAGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
105894153 CGGTAATTCTGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
* *
105894180 CGGTAATTCTATAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
105894207 TAGTAATTCTGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
105894234 TGGTAATTCTGTAAA-TCGAGGATAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
*
105894261 TAGTAATTCTGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
* *
105894288 CGGTAATTCTATAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
**
105894315 CAGTAATTCTGTAAACT-GAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
105894342 TGGTAATTCTGTAAA-TCGAGGGTAAAA
1 TGGTAATTCTGTAAACTCGAGGGTAAAA
105894369 TGGTAATT
1 TGGTAATT
105894377 TTACAAGTCG
Statistics
Matches: 198, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
26 4 0.02
27 190 0.96
28 4 0.02
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (28 bp):
TGGTAATTCTGTAAACTCGAGGGTAAAA
Found at i:105894390 original size:54 final size:54
Alignment explanation
Indices: 105894126--105894376 Score: 403
Period size: 54 Copynumber: 4.6 Consensus size: 54
105894116 AAGGGTATTT
* * **
105894126 TGGTAATTCTATAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
105894180 CGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
105894234 TGGTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
105894288 CGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
105894342 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATT
105894377 TTACAAGTCG
Statistics
Matches: 181, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 181 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:105896608 original size:40 final size:40
Alignment explanation
Indices: 105896456--105896601 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
105896446 TCGAATGATG
* * * *
105896456 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCCAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
105896496 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCCAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
**
105896536 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
105896577 -CCGGGCCATGTCCCGAAGGCATTTG
1 TCCGGGCCAAGTCCCGAAGGCATTTG
105896602 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:105896608 original size:80 final size:80
Alignment explanation
Indices: 105896456--105896624 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 80
105896446 TCGAATGATG
* * *
105896456 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACCAAGATCCGAAGGCATTT
**
105896521 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
105896536 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCCATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACCAAGAT-CCGAAGGCAT
*
105896599 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
105896616 TCC-GGTTAA
1 TCCGGGTTAA
105896625 ACTCCGAAGG
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
79 9 0.12
80 60 0.79
81 7 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACCAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:105898537 original size:46 final size:46
Alignment explanation
Indices: 105898487--105898662 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
105898477 TGGTTGAGCA
105898487 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
105898533 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
105898578 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
105898626 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105898663 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:105898643 original size:93 final size:93
Alignment explanation
Indices: 105898484--105898654 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
105898474 GGATGGTTGA
* *
105898484 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105898549 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
105898577 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105898642 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
105898655 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:105901633 original size:15 final size:15
Alignment explanation
Indices: 105901613--105901681 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
105901603 GTATCTTGGG
105901613 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
105901628 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
105901643 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
105901658 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
105901673 TTTCTTTAT
1 TTTCTTTAT
105901682 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:105901682 original size:30 final size:30
Alignment explanation
Indices: 105901604--105901691 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
105901594 CATAGTATCG
* * * *
105901604 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
105901634 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
105901664 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
105901692 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:105904111 original size:46 final size:46
Alignment explanation
Indices: 105904061--105904236 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
105904051 TGGTTGAGCA
105904061 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
105904107 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
105904152 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
105904200 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105904237 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:105904217 original size:93 final size:93
Alignment explanation
Indices: 105904058--105904228 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
105904048 GGATGGTTGA
* *
105904058 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105904123 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
105904151 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105904216 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
105904229 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:105914803 original size:93 final size:93
Alignment explanation
Indices: 105914691--105914861 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
105914681 GCCCATAAGT
* * *
105914691 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105914756 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105914784 GAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105914849 CGAGTTCGGATGC
66 CGAGTTCGGATGC
105914862 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.