Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 346 of 770
Found at i:106112258 original size:30 final size:29
Alignment explanation
Indices: 106112219--106112338 Score: 150
Period size: 30 Copynumber: 4.0 Consensus size: 29
106112209 GTAATGGAGC
* *
106112219 AAGTGTGGCTAGTGGATTTGGTGGTGGAA
1 AAGTATGGCTAGTGGAGTTGGTGGTGGAA
106112248 AATGTATGGCTAGTGGAGTTGGTGGTGGAA
1 AA-GTATGGCTAGTGGAGTTGGTGGTGGAA
* *
106112278 AAGGAGTGGCTGGTGGAGTTGGTGGTGGAA
1 AAGTA-TGGCTAGTGGAGTTGGTGGTGGAA
* * *
106112308 AAGGTGTGGCTAGTAGAGTTGGTGGTAGAA
1 AA-GTATGGCTAGTGGAGTTGGTGGTGGAA
106112338 A
1 A
106112339 CAGCTAAGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
29 4 0.05
30 74 0.94
31 1 0.01
ACGTcount: A:0.23, C:0.03, G:0.46, T:0.28
Consensus pattern (29 bp):
AAGTATGGCTAGTGGAGTTGGTGGTGGAA
Found at i:106112287 original size:60 final size:60
Alignment explanation
Indices: 106112223--106112338 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
106112213 TGGAGCAAGT
* * * *
106112223 GTGGCTAGTGGATTTGGTGGTGGAAAATGTATGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGTATGGCTAGTAGAGTTGGTGGTAGAAAAGGA
* *
106112283 GTGGCTGGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTAGAGTTGGTGGTAGAAA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGTATGGCTAGTAGAGTTGGTGGTAGAAA
106112339 CAGCTAAGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.22, C:0.03, G:0.47, T:0.28
Consensus pattern (60 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGTATGGCTAGTAGAGTTGGTGGTAGAAAAGGA
Found at i:106113238 original size:15 final size:15
Alignment explanation
Indices: 106113205--106113252 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
106113195 TTGATTTTTT
* *
106113205 AAAAAGCAGAATTTG
1 AAAAAGCAAAAATTG
*
106113220 -AAAAGCATAAATTG
1 AAAAAGCAAAAATTG
*
106113234 AAAAAACAAAAATTG
1 AAAAAGCAAAAATTG
106113249 AAAA
1 AAAA
106113253 TACCTCAGCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.17
Consensus pattern (15 bp):
AAAAAGCAAAAATTG
Found at i:106113306 original size:103 final size:105
Alignment explanation
Indices: 106113141--106113341 Score: 284
Period size: 103 Copynumber: 1.9 Consensus size: 105
106113131 AAAACAGATT
106113141 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTTT
1 TTGAAAATACCTCGACA-GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTT
* * *
106113205 AAAAAGCAGAATTTGAAAAGCATAAATTGAAAAAACAAAAA
65 AAAAAGCAGAAATTGAAAAGCAGAAATCGAAAAAACAAAAA
*
106113246 TTGAAAATACCTC-AGC-GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTCGA-CAGTGACCC-GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTT
* * *
106113308 TGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAA
64 TAAAAAGCAGAAATTGAAAAGCAGAAATCGAAAA
106113342 TACCTCAGCG
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
102 3 0.03
103 35 0.41
104 34 0.40
105 14 0.16
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (105 bp):
TTGAAAATACCTCGACAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTA
AAAAGCAGAAATTGAAAAGCAGAAATCGAAAAAACAAAAA
Found at i:106113368 original size:89 final size:89
Alignment explanation
Indices: 106113216--106113662 Score: 777
Period size: 89 Copynumber: 5.0 Consensus size: 89
106113206 AAAAGCAGAA
* *
106113216 TTTGAAAAGCATAAATTGAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
1 TTTGAAGAGCAGAAATTG-AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
106113281 ACCTCTCGCAATATGAGTTGATTTT
65 ACCTCTCGCAATATGAGTTGATTTT
* * * *
106113306 TTTGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
106113371 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
*
106113395 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
*
106113460 CCTCTCGCAATACGAGTTGATTTTT
66 CCTCTCGCAATATGAGTTGA-TTTT
* *
106113485 TTTGAAGAGCAGAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
106113550 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
*
106113574 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
106113639 CCTCTCGCAATATGAGTTGATTTT
66 CCTCTCGCAATATGAGTTGATTTT
106113663 GAAAAACAGA
Statistics
Matches: 340, Mismatches: 16, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
89 238 0.70
90 102 0.30
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (89 bp):
TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTT
Found at i:106113421 original size:14 final size:14
Alignment explanation
Indices: 106113404--106113430 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
106113394 TTTTGAAGAG
106113404 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
106113418 CAGAAATTGAAAA
1 CAGAAATTGAAAA
106113431 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:106113527 original size:268 final size:253
Alignment explanation
Indices: 106113410--106113974 Score: 731
Period size: 239 Copynumber: 2.3 Consensus size: 253
106113400 AGAGCAGAAA
*
106113410 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATACG
1 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATACG
* *
106113474 AGTTGA-TTTTTTTTGAAGAGCAGAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTG
66 AGTTGATTTTTTTTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTG
106113538 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAAAACAAAAA
131 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAAAACAAAAA
* *
106113603 TTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATT
196 TCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
106113661 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATACG
* * * * * *
106113726 AGTTGATTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGC
66 AGTTGATTTTTTTTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGC--GTG-CC
* *
106113791 C-GAAGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACA-AACAGAAATTG-------
128 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AGAGCAGAAATTGAAAAACA
* *
106113845 -AAAT------TACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
192 AAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* * * * * *
106113901 TTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATG
1 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATACG
106113965 AGTTGATTTT
66 AGTTGATTTT
106113975 GAAAAACAAA
Statistics
Matches: 288, Mismatches: 19, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
239 103 0.36
240 15 0.05
245 4 0.01
251 14 0.05
252 53 0.18
253 61 0.21
254 1 0.00
255 35 0.12
256 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (253 bp):
TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATACG
AGTTGATTTTTTTTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAAAACAAAAA
TCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
Found at i:106113537 original size:179 final size:173
Alignment explanation
Indices: 106113216--106113902 Score: 871
Period size: 179 Copynumber: 4.0 Consensus size: 173
106113206 AAAAGCAGAA
* *
106113216 TTTGAAAAGCATAAATTGAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
1 TTTGAAGAGCAGAAATTG-AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTC
* *
106113281 ACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAGCAGAAATCGAAAATACC
65 ACCTCTCGCAATATGAGTTGA--TTTTTGAAGAGCAGAAATT--AAA-CAGAAATTGAAATTACC
106113346 TCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
125 TCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
106113395 TTTGAAGAGCAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
* *
106113460 CCTCTCGCAATACGAGTTGATTTTTTTTGAAGAGCAGAAATTGAAAAACATAAATTGAAATTACC
66 CCTCTCGCAATATGAGTTGA---TTTTTGAAGAGCAGAAATT---AAACAGAAATTGAAATTACC
106113525 TCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
125 TCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
106113574 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCA
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
* * *
106113639 CCTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAATT------TAA---AAA-TACCTCAGCG
66 CCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTAAACAGAAATTGAAATTACCTCAGCG
*
106113693 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
131 TGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* * * * * * *
106113738 TTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAAGCTCAAC
1 TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAAC
106113802 TCACCTCTCGCAATATGAGTTGATTTTT---GA-C-------AAACAGAAATTGAAATTACCTCA
63 TCACCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTAAACAGAAATTGAAATTACCTCA
* *
106113856 GCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
128 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
106113902 T
1 T
106113903 GACAAACAGA
Statistics
Matches: 463, Mismatches: 27, Indels: 51
0.86 0.05 0.09
Matches are distributed among these distances:
162 50 0.11
163 4 0.01
164 50 0.11
165 3 0.01
166 84 0.18
167 6 0.01
175 16 0.03
178 65 0.14
179 182 0.39
180 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (173 bp):
TTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTGAAGAGCAGAAATTAAACAGAAATTGAAATTACCTCAGCG
TGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
Found at i:106113710 original size:73 final size:73
Alignment explanation
Indices: 106113589--106114046 Score: 429
Period size: 73 Copynumber: 6.0 Consensus size: 73
106113579 AGAGCAGAAA
* * * *
106113589 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTTAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
106113654 GTTGA-TT
66 GTTGATTT
106113661 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
106113726 AGTTGATTTTTTT
65 AGTTGA----TTT
* ** * ** * * * *
106113739 TTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAAGCTCAAC
1 TTGAAAAACAGAAATT--AAAA-A-TACCT---CAG-CGT--GTCCTGAG-GCTC-AA-CT----
106113802 TCACCTCTCGCAATATGAGTTGATTT
49 -CACCTCTCGCAATATGAGTTGATTT
* * * *
106113828 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
106113893 GTTGATTT
66 GTTGATTT
* * * *
106113901 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
106113966 GTTGA-TT
66 GTTGATTT
* * * * * *
106113973 TTGAAAAACAAAAATTAAAAGTATCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
106114038 GTTGATTT
66 GTTGATTT
106114046 T
1 T
106114047 CCTTGAAAAG
Statistics
Matches: 323, Mismatches: 36, Indels: 53
0.78 0.09 0.13
Matches are distributed among these distances:
72 76 0.24
73 149 0.46
77 2 0.01
78 15 0.05
79 9 0.03
80 6 0.02
81 4 0.01
82 2 0.01
84 2 0.01
85 4 0.01
86 5 0.02
87 8 0.02
88 2 0.01
89 17 0.05
93 22 0.07
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:106113764 original size:14 final size:14
Alignment explanation
Indices: 106113745--106113773 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
106113735 TTTTTTTACG
106113745 AACAGAAATTGAAA
1 AACAGAAATTGAAA
106113759 AACAGAAATTGAAA
1 AACAGAAATTGAAA
106113773 A
1 A
106113774 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:106113819 original size:93 final size:92
Alignment explanation
Indices: 106113661--106113829 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 92
106113651 TGAGTTGATT
* * *
106113661 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAAGCTCAACTCACCTCTCGCAATATG
106113726 AGTTGATTTTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTTTACGAACAGAAA
*
106113753 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAAGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAAGCTCAACTCACCTCTCGCAAT
106113816 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
106113830 GACAAACAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
91 14 0.20
92 14 0.20
93 40 0.57
94 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (92 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAAGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTTTACGAACAGAAA
Found at i:106113861 original size:166 final size:160
Alignment explanation
Indices: 106113500--106114046 Score: 694
Period size: 166 Copynumber: 3.5 Consensus size: 160
106113490 AGAGCAGAAA
* * *
106113500 TTGAAAAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
106113565 GTTGATTTTTTTGAAGAGCAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGG
66 GTTGATTTTTTT-TAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGG
*
106113630 CTTAACTCACCTCTCGCAATATGAGTTGATT
130 CTCAACTCACCTCTCGCAATATGAGTTGATT
*
106113661 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
106113726 AGTTGATTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGC
65 AGTTGA--TTTTTTTTA-GAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-CC
*
106113791 C-GAAGCTCAACTCACCTCTCGCAATATGAGTTGATTT
124 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
* * *
106113828 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
106113893 GTTGA---TTTTT-G-AC----------AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
66 GTTGATTTTTTTTAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
*
106113943 TCAACTCACCTCTAGCAATATGAGTTGATT
131 TCAACTCACCTCTCGCAATATGAGTTGATT
* * * * * *
106113973 TTGAAAAACAAAAATTAAAAGTATCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
106114038 GTTGATTTT
66 GTTGATTTT
106114047 CCTTGAAAAG
Statistics
Matches: 347, Mismatches: 27, Indels: 37
0.84 0.07 0.09
Matches are distributed among these distances:
145 67 0.19
146 34 0.10
148 24 0.07
158 2 0.01
159 1 0.00
161 18 0.05
162 53 0.15
163 1 0.00
164 43 0.12
166 87 0.25
167 17 0.05
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (160 bp):
TTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTAGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATT
Found at i:106114028 original size:145 final size:147
Alignment explanation
Indices: 106113753--106114046 Score: 432
Period size: 145 Copynumber: 2.0 Consensus size: 147
106113743 CGAACAGAAA
*
106113753 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAAGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAAGCTCAACTCACCTCTAGCAATAT
* * * * *
106113818 GAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCT
65 GAGTTGATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
106113883 CGCAATATGAGTTGATTT
130 CGCAATATGAGTTGATTT
* ** * *
106113901 TTGACAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTAGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAAGCTCAACTCACCTCTAGCAATAT
* *
106113964 GAGTTGA-TTTTGAAAAACAAAAATTAAAAGTATCTCAACGTGTCTTGAGGCTCAACTCATCTCT
65 GAGTTGATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
106114028 CGCAATATGAGTTGATTT
130 CGCAATATGAGTTGATTT
106114046 T
1 T
106114047 CCTTGAAAAG
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
145 71 0.54
146 34 0.26
148 27 0.20
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAAGCTCAACTCACCTCTAGCAATATG
AGTTGATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTT
Found at i:106122360 original size:15 final size:16
Alignment explanation
Indices: 106122335--106122365 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
106122325 AGTATGGGAT
106122335 ATGCAATGAATGAATG
1 ATGCAATGAATGAATG
106122351 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
106122366 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (16 bp):
ATGCAATGAATGAATG
Found at i:106123968 original size:16 final size:15
Alignment explanation
Indices: 106123947--106123994 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
106123937 GATGTGAATA
106123947 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
106123963 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
106123978 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
106123994 A
1 A
106123995 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:106123970 original size:24 final size:24
Alignment explanation
Indices: 106123943--106123998 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
106123933 TAATGATGTG
*
106123943 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
106123967 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
106123991 AATAATAA
1 AATAATAA
106123999 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:106123977 original size:8 final size:8
Alignment explanation
Indices: 106123943--106123994 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
106123933 TAATGATGTG
*
106123943 AATAATAA
1 AATATTAA
106123951 AATATATAA
1 AATAT-TAA
106123960 AATA-TAA
1 AATATTAA
106123967 AATATTAA
1 AATATTAA
*
106123975 AATATCAA
1 AATATTAA
*
106123983 AATATTAG
1 AATATTAA
106123991 AATA
1 AATA
106123995 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:106124210 original size:22 final size:24
Alignment explanation
Indices: 106124147--106124211 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
106124137 CGTGATAATA
*
106124147 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
106124172 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
106124195 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
106124212 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:106124265 original size:23 final size:24
Alignment explanation
Indices: 106124236--106124369 Score: 75
Period size: 25 Copynumber: 5.5 Consensus size: 24
106124226 AAATATATAT
106124236 ATATATAAATAATATAATATTAAAG
1 ATATAT-AATAATATAATATTAAAG
* * * *
106124261 ATATATACATAAAATAGTATAAAAT
1 ATATATA-ATAATATAATATTAAAG
106124286 ATATATATACGTAATATAGA-ATTTAAA-
1 ATATATA-A--TAATATA-ATA-TTAAAG
** *
106124313 ATATA-CCTAATAT-AT-TAAAAG
1 ATATATAATAATATAATATTAAAG
106124334 A-ATATATATAATATAATATT-AAG
1 ATATATA-ATAATATAATATTAAAG
*
106124357 AAATATAATAATA
1 ATATATAATAATA
106124370 ACAAAAAAGG
Statistics
Matches: 83, Mismatches: 14, Indels: 26
0.67 0.11 0.21
Matches are distributed among these distances:
20 7 0.08
21 2 0.02
22 6 0.07
23 18 0.22
24 7 0.08
25 27 0.33
27 12 0.14
28 4 0.05
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (24 bp):
ATATATAATAATATAATATTAAAG
Found at i:106124272 original size:25 final size:25
Alignment explanation
Indices: 106124236--106124369 Score: 86
Period size: 23 Copynumber: 5.6 Consensus size: 25
106124226 AAATATATAT
*
106124236 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATTAAAG
* * * *
106124261 ATATATACATAAAATAGTATAAAATAT
1 ATATATACATAATATAATAT-TAA-AG
* *
106124288 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATATTAAAG
* *
106124312 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATACATAATATAATATTAAAG
*
106124334 A-ATATATATAATATAATATT-AAG
1 ATATATACATAATATAATATTAAAG
*
106124357 AAATATA-ATAATA
1 ATATATACATAATA
106124370 ACAAAAAAGG
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 24 0.28
24 7 0.08
25 18 0.21
26 3 0.04
27 17 0.20
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAATATTAAAG
Found at i:106124291 original size:27 final size:27
Alignment explanation
Indices: 106124223--106124304 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 27
106124213 ATAACATGTA
* *
106124223 AAAAAATATATATATATATAAATAATAT
1 AAAAAATATATATACATA-AAATAGTAT
*
106124251 AATATTAAAGATATATACATAAAATAGTAT
1 AA-A--AAATATATATACATAAAATAGTAT
* * *
106124281 AAAATATATATATACGTAATATAG
1 AAAAAATATATATACATAAAATAG
106124305 AATTTAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
27 17 0.39
28 2 0.05
29 2 0.05
30 10 0.23
31 13 0.30
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (27 bp):
AAAAAATATATATACATAAAATAGTAT
Found at i:106124932 original size:30 final size:30
Alignment explanation
Indices: 106124900--106125018 Score: 211
Period size: 30 Copynumber: 4.0 Consensus size: 30
106124890 TGGAGCAAGT
* * *
106124900 GTGGCTAGTGGATTTGGTGGTGGAAAATGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
106124930 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
106124960 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
106124990 GTGGCTAGTGGAGTTGGTGGTGGAAAAGG
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGG
106125019 CTAGATTTAG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 86 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.26
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:106128647 original size:16 final size:16
Alignment explanation
Indices: 106128623--106128656 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106128613 TATAACGTGG
106128623 AAAACTAAATAAAATA
1 AAAACTAAATAAAATA
* *
106128639 AAAATTAAATTAAATA
1 AAAACTAAATAAAATA
106128655 AA
1 AA
106128657 CCAAAATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAACTAAATAAAATA
Found at i:106129401 original size:35 final size:35
Alignment explanation
Indices: 106129362--106129432 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
106129352 TTAAAAATAA
106129362 CATATACTATTAATTTAGCCTATTTCTTTGCTCTG
1 CATATACTATTAATTTAGCCTATTTCTTTGCTCTG
* *
106129397 CATATAGTATTAATTTAGCCTGTTTCTTTGCTCTG
1 CATATACTATTAATTTAGCCTATTTCTTTGCTCTG
106129432 C
1 C
106129433 CCGACTTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.11, T:0.48
Consensus pattern (35 bp):
CATATACTATTAATTTAGCCTATTTCTTTGCTCTG
Found at i:106136653 original size:26 final size:26
Alignment explanation
Indices: 106136624--106136731 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
106136614 TGGTACAAAT
*
106136624 TGATAACGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106136650 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106136676 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106136702 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106136728 TGAT
1 TGAT
106136732 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106143695 original size:26 final size:26
Alignment explanation
Indices: 106143666--106143773 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
106143656 TGGTACAAAT
106143666 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
106143692 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106143718 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106143744 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106143770 TGAT
1 TGAT
106143774 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106155082 original size:29 final size:27
Alignment explanation
Indices: 106155048--106155150 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
106155038 TACTCAATCA
*
106155048 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
106155077 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
106155106 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
106155135 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
106155151 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:106162883 original size:29 final size:27
Alignment explanation
Indices: 106162849--106162951 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
106162839 TACTCAATCA
*
106162849 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
106162878 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
106162907 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
106162936 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
106162952 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:106171593 original size:39 final size:40
Alignment explanation
Indices: 106171458--106171602 Score: 247
Period size: 40 Copynumber: 3.6 Consensus size: 40
106171448 AGTGGCTAAT
* *
106171458 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
*
106171498 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
*
106171538 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
106171578 -CCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
106171603 AGCTAGTGGC
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 25 0.25
40 75 0.75
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
Found at i:106171624 original size:39 final size:39
Alignment explanation
Indices: 106171419--106171625 Score: 226
Period size: 40 Copynumber: 5.2 Consensus size: 39
106171409 TGGATGATAA
* *
106171419 CCGGGCTAAGTCCC-AAGAGCATTT-TAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGT-GCGAGT-ACTATA-T
*
106171459 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
106171499 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
106171539 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
106171578 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
106171618 CC-GGCTAA
1 CCGGGCTAA
106171626 ACCCCAAAGG
Statistics
Matches: 149, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 39 0.26
40 103 0.69
41 6 0.04
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:106182113 original size:7 final size:7
Alignment explanation
Indices: 106182101--106182143 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
106182091 GATCCTTCGT
106182101 ATGTAAA
1 ATGTAAA
106182108 ATGTAAA
1 ATGTAAA
106182115 ATGTAAA
1 ATGTAAA
106182122 ATGTAAA
1 ATGTAAA
106182129 ATGTAAA
1 ATGTAAA
106182136 ATGTAAA
1 ATGTAAA
106182143 A
1 A
106182144 AAGGACCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.58, C:0.00, G:0.14, T:0.28
Consensus pattern (7 bp):
ATGTAAA
Found at i:106185266 original size:80 final size:81
Alignment explanation
Indices: 106185129--106185467 Score: 362
Period size: 80 Copynumber: 4.2 Consensus size: 81
106185119 TAATAAAGAG
* * * *
106185129 AAATTATCGAAATAATCCC-GATTTGTAAAATTACCGAAGTACCCCCGA-TTGTAAAATTACCGA
1 AAATTATCGAAAT-ACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGA
* *
106185192 AATACCCCCGATTTATA
65 AATACCCTCGATTTGTA
* * *
106185209 AAATTATCGAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGA-TTGTGAAATTACTGAA
1 AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
*
106185273 ATACACTCGATTTGTA
66 ATACCCTCGATTTGTA
* * * *
106185289 AAATTATCTAAATACCCCTAATTTATGAAATTACCGAAACACCCTCGATTTGTAAAATTACCGAA
1 AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
* ** *
106185354 ACATTCTCGATTGGTA
66 ATACCCTCGATTTGTA
* * * * * * * * *
106185370 AAATTACCGAAACACTCTTGATTTTTAAAATTACCGAAATACCCTTGATTTGTAAAATTATCGAT
1 AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
* *
106185435 ATACCCT-AATAGTGTA
66 ATACCCTCGAT-TTGTA
*
106185451 AAATTATCAAAATACCC
1 AAATTATCGAAATACCC
106185468 TTGTAGTGTA
Statistics
Matches: 213, Mismatches: 43, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.02
80 110 0.52
81 99 0.46
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTATCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
ATACCCTCGATTTGTA
Found at i:106185438 original size:27 final size:27
Alignment explanation
Indices: 106185129--106185494 Score: 305
Period size: 27 Copynumber: 13.6 Consensus size: 27
106185119 TAATAAAGAG
* *
106185129 AAATTATCGAAATAATCC-CGATTTGTA
1 AAATTACCGAAAT-ACCCTCGATTTGTA
* *
106185156 AAATTACCGAAGTACCCCCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
106185182 AAATTACCGAAATACCCCCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
106185209 AAATTATCGAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* *
106185236 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
106185262 AAATTACTGAAATACACTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * * *
106185289 AAATTATCTAAATACCC-CTAATTTATG
1 AAATTACCGAAATACCCTC-GATTTGTA
*
106185316 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* ** *
106185343 AAATTACCGAAACATTCTCGATTGGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
106185370 AAATTACCGAAACACTCTTGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
106185397 AAATTACCGAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
106185424 AAATTATCGATATACCCT-AATAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* * * *
106185451 AAATTATCAAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
106185478 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
106185495 CTGTAGGGTA
Statistics
Matches: 282, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
26 56 0.20
27 224 0.79
28 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:106185499 original size:27 final size:27
Alignment explanation
Indices: 106185444--106185511 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
106185434 TATACCCTAA
* * *
106185444 TAGTGTAAAATTATCAAAATACCCTTG
1 TAGTGTAAAATGACCAAAATACCCCTG
* *
106185471 TAGTGTAAAATGACCGACATACCCCTG
1 TAGTGTAAAATGACCAAAATACCCCTG
*
106185498 TAGGGTAAAATGAC
1 TAGTGTAAAATGAC
106185512 TGTTTTTCCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
TAGTGTAAAATGACCAAAATACCCCTG
Found at i:106185506 original size:54 final size:54
Alignment explanation
Indices: 106185395--106185508 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
106185385 TCTTGATTTT
* * * * * *
106185395 TAAAATTACCGAAATACCCTTGATTTGTAAAATTATCGATATACCCTAATAGTG
1 TAAAATTACCAAAATACCCTTGATGTGTAAAATGACCGACATACCCTAATAGGG
* *
106185449 TAAAATTATCAAAATACCCTTG-TAGTGTAAAATGACCGACATACCCCT-GTAGGG
1 TAAAATTACCAAAATACCCTTGAT-GTGTAAAATGACCGACATA-CCCTAATAGGG
106185503 TAAAAT
1 TAAAAT
106185509 GACTGTTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.02
54 45 0.90
55 4 0.08
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTTGATGTGTAAAATGACCGACATACCCTAATAGGG
Found at i:106187867 original size:30 final size:30
Alignment explanation
Indices: 106187812--106187942 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106187802 ATAGTGAATC
*
106187812 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
106187841 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
106187871 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
106187899 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
106187929 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106187943 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:106187922 original size:58 final size:58
Alignment explanation
Indices: 106187811--106187942 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
106187801 TATAGTGAAT
* * * * *
106187811 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
106187870 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
106187928 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106187943 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:106195676 original size:46 final size:46
Alignment explanation
Indices: 106195626--106195801 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
106195616 TATTTGGGCA
106195626 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
106195672 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
106195719 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
106195765 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106195802 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:106195781 original size:93 final size:93
Alignment explanation
Indices: 106195622--106195793 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106195612 TGGATATTTG
* *
106195622 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106195687 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
106195715 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106195780 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106195794 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:106198771 original size:15 final size:15
Alignment explanation
Indices: 106198751--106198819 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
106198741 GTATCTTGGG
106198751 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
106198766 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
106198781 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
106198796 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
106198811 TTTCTTTAT
1 TTTCTTTAT
106198820 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:106198820 original size:30 final size:30
Alignment explanation
Indices: 106198742--106198829 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
106198732 CATAGTATCG
* * * *
106198742 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
106198772 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
106198802 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
106198830 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:106201276 original size:46 final size:46
Alignment explanation
Indices: 106201209--106201384 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
106201199 TATTTGGGCA
106201209 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
106201255 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
106201302 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
106201348 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106201385 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:106201364 original size:93 final size:93
Alignment explanation
Indices: 106201205--106201376 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106201195 GGGATATTTG
* *
106201205 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106201270 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
106201298 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106201363 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106201377 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:106204178 original size:30 final size:30
Alignment explanation
Indices: 106204123--106204253 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106204113 ATAGTGAATC
*
106204123 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
106204152 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
106204182 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
106204210 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
106204240 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106204254 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:106204233 original size:58 final size:58
Alignment explanation
Indices: 106204122--106204253 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
106204112 TATAGTGAAT
* * * * *
106204122 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
106204181 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
106204239 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106204254 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:106208162 original size:27 final size:27
Alignment explanation
Indices: 106208131--106208386 Score: 294
Period size: 27 Copynumber: 9.7 Consensus size: 27
106208121 TAATAAAGAG
106208131 AAATTATCGAAATAACCC-CGATTTGTA
1 AAATTATCGAAAT-ACCCTCGATTTGTA
*
106208158 AAATTATCGAAGTACCC-CGATTTGT-
1 AAATTATCGAAATACCCTCGATTTGTA
* *
106208183 -AA-TACCGAAATACCCTCGA-TTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
106208207 ATATTATTGAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
106208234 AAATTATCGAAATA-CCTCCGATTTGTG
1 AAATTATCGAAATACCCT-CGATTTGTA
* *
106208261 AAATTA-CTGAAACACCCTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* *
106208288 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
106208315 AAATTATCGAAACACACTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
106208342 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
106208369 AAATTATCGATATACCCT
1 AAATTATCGAAATACCCT
106208387 TAGGCCTTGT
Statistics
Matches: 197, Mismatches: 23, Indels: 18
0.83 0.10 0.08
Matches are distributed among these distances:
23 15 0.08
24 5 0.03
25 1 0.01
26 30 0.15
27 142 0.72
28 4 0.02
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:106211950 original size:25 final size:26
Alignment explanation
Indices: 106211919--106211972 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
106211909 AAATTATTTA
* * *
106211919 TTATTTATTATTATTTTTATT-AAAT
1 TTATTTAATAATAATTTTATTAAAAT
106211944 TTATTTAATAATAATTTTATTAAAAT
1 TTATTTAATAATAATTTTATTAAAAT
106211970 TTA
1 TTA
106211973 AAAATAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (26 bp):
TTATTTAATAATAATTTTATTAAAAT
Found at i:106211964 original size:31 final size:31
Alignment explanation
Indices: 106211906--106211964 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
106211896 TTAAAATATG
* * *
106211906 ATTAAATTATTTATTATTTATTATTATTTTT
1 ATTAAATTATTTAATAATAATTATTATTTTT
106211937 ATTAAATTTATTTAATAATAATT-TTATT
1 ATTAAA-TTATTTAATAATAATTATTATT
106211965 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 11 0.46
32 13 0.54
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (31 bp):
ATTAAATTATTTAATAATAATTATTATTTTT
Found at i:106211978 original size:25 final size:25
Alignment explanation
Indices: 106211933--106211983 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
106211923 TTATTATTAT
**
106211933 TTTTATTAAATTTATTTAATAATAA
1 TTTTATTAAATTTATAAAATAATAA
106211958 TTTTATTAAAATTTA-AAAATAATAA
1 TTTTATT-AAATTTATAAAATAATAA
106211983 T
1 T
106211984 CATTTATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTTATTAAATTTATAAAATAATAA
Found at i:106212197 original size:16 final size:16
Alignment explanation
Indices: 106212126--106212197 Score: 101
Period size: 16 Copynumber: 4.6 Consensus size: 16
106212116 ACAACTGAAT
*
106212126 TATT-CATTACAGGTC
1 TATTCCATTACAGCTC
*
106212141 TATTCTATTACAGCTC
1 TATTCCATTACAGCTC
*
106212157 TATTCCATTACAACTC
1 TATTCCATTACAGCTC
*
106212173 TATTACATTACAGCTC
1 TATTCCATTACAGCTC
106212189 TATTCCATT
1 TATTCCATT
106212198 CCTCCCAACC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 4 0.08
16 45 0.92
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (16 bp):
TATTCCATTACAGCTC
Found at i:106212269 original size:27 final size:27
Alignment explanation
Indices: 106212239--106212290 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
106212229 AACTATCGAA
* *
106212239 ATACCCTTGTAGTGTAAAATGACTGAC
1 ATACCCCTGTAGGGTAAAATGACTGAC
106212266 ATACCCCTGTAGGGTAAAATGACTG
1 ATACCCCTGTAGGGTAAAATGACTG
106212291 TTTTGCCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
ATACCCCTGTAGGGTAAAATGACTGAC
Found at i:106217175 original size:40 final size:40
Alignment explanation
Indices: 106217131--106217326 Score: 281
Period size: 40 Copynumber: 4.9 Consensus size: 40
106217121 GGATATAGCT
* *
106217131 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
106217171 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
106217211 ACTCGCACAAATGCCTTCGGGACTTAGCCCAG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
106217251 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
106217291 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
106217327 CATCCGAATA
Statistics
Matches: 139, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.01
40 135 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:106217252 original size:80 final size:80
Alignment explanation
Indices: 106217131--106217321 Score: 321
Period size: 80 Copynumber: 2.4 Consensus size: 80
106217121 GGATATAGCT
* * ** *
106217131 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTT
106217196 AGCCCGGATTTGGTA
66 AGCCCGGATTTGGTA
106217211 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGACT
106217275 TAGCCCGGATTTGGTA
65 TAGCCCGGATTTGGTA
106217291 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
106217322 GTTATCATCC
Statistics
Matches: 105, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
79 1 0.01
80 102 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTGGTA
Found at i:106219949 original size:15 final size:15
Alignment explanation
Indices: 106219910--106219980 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
106219900 GTATCTTGGG
*
106219910 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
106219925 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
106219940 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
106219955 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
106219970 TTTCTTTATTC
1 TTTCTTTATTC
106219981 GTTTTCTTGT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
14 2 0.04
15 41 0.91
16 2 0.04
ACGTcount: A:0.11, C:0.20, G:0.13, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:106219979 original size:30 final size:31
Alignment explanation
Indices: 106219901--106219980 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
106219891 CATAGTATCG
* *
106219901 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCCTGGATCTCTC
* *
106219931 TAT-TCTGGATTTCTTTATTCC-GGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCTGGATCTCTC
106219961 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
106219981 GTTTTCTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 1 0.02
30 38 0.88
31 4 0.09
ACGTcount: A:0.11, C:0.19, G:0.15, T:0.55
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCTGGATCTCTC
Found at i:106222402 original size:46 final size:46
Alignment explanation
Indices: 106222352--106222527 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
106222342 ATGGTTGGCA
106222352 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
106222398 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
106222445 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
106222491 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106222528 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 73 0.66
47 37 0.34
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:106222507 original size:93 final size:93
Alignment explanation
Indices: 106222348--106222519 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
106222338 TAGGATGGTT
* *
106222348 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106222413 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
106222441 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106222506 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106222520 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:106226709 original size:43 final size:43
Alignment explanation
Indices: 106226559--106226709 Score: 159
Period size: 43 Copynumber: 3.5 Consensus size: 43
106226549 ATTTGTGTTA
* *
106226559 TCATGTAAGACCACATCTGGGATGTTGGCATCGACT-TATGATT
1 TCATGTAAGACCACGTCTGGGATGTTGGCATCGA-TATTTGATT
* * *
106226602 TACGTGTAAGACAACGTTTGGGATGTTGGCATC-ATATTTGATT
1 T-CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATT
*
106226645 TCATGTAAAACC-CTGTCTGGGATAG-TGGCATCGATATTTGATT
1 TCATGTAAGACCAC-GTCTGGGAT-GTTGGCATCGATATTTGATT
*
106226688 AT-ATGTAAGACCACGTTTGGGA
1 -TCATGTAAGACCACGTCTGGGA
106226710 CGTTTACATT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 24 0.27
43 36 0.40
44 29 0.32
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
TCATGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATT
Found at i:106231977 original size:49 final size:49
Alignment explanation
Indices: 106231882--106231997 Score: 132
Period size: 49 Copynumber: 2.4 Consensus size: 49
106231872 GTGTGTCAAT
*
106231882 GTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGC
1 GTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAAGCCAGC
* * * * * *
106231931 GTAAGACTTGTCTGGGGCATGGCATTGGC-CTCGATATATGAAAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAAAGCCAGC
106231980 GTAA-ACC--TCTGGGACATG
1 GTAAGACCTGTCTGGGACATG
106231998 ACAACGACTT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
46 10 0.18
48 4 0.07
49 43 0.75
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAAGCCAGC
Found at i:106234239 original size:40 final size:40
Alignment explanation
Indices: 106234154--106234304 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
106234144 AATTGAATGA
* * *
106234154 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
106234194 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
106234235 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
106234274 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
106234305 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:106234318 original size:40 final size:40
Alignment explanation
Indices: 106234191--106234320 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
106234181 ATGCTGGAAA
* * * *
106234191 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
106234231 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
106234271 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
106234311 TTATATCCGG
1 TTATATCCGG
106234321 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:106239738 original size:88 final size:88
Alignment explanation
Indices: 106239587--106239913 Score: 320
Period size: 88 Copynumber: 3.7 Consensus size: 88
106239577 AAAAAACATC
* *
106239587 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTTCGCAATATGAGTTGATTTT
1 AATTGAAAATACCTCAGCGTGTG-TCTGAGGCTCAACTCA-C-CTTCGCAATATGAGTTGATTTT
106239652 TTTGACAAACATAAATTGAAAAAAAAGA
63 TTTGACAAACA-AAATTG-AAAAAAAGA
*
106239680 AATTGAAAATACCTCAGCG-GT-TCTGAGGCTGAACTCACCTTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTGTCTGAGGCTCAACTCACCTTCGCAATATGAGTTGATTTTTTT
* *
106239743 GGAAAAACAAAATTTGAAAAACAGA
66 -GACAAACAAAA-TTGAAAAAAAGA
* * * *
106239768 ATTTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTT
1 AATTGAAAATACCTCAGCGTGT--GTCTGAGGCTCAACTCACC-TTCGCAATATGAGTTGATTTT
* * *
106239832 TTTGA-AACACAGAATTGAAGAACAGA
63 TTTGACAA-ACAAAATTGAAAAAAAGA
* * *
106239858 AA-TGGAAACACCTCA-C-----T-TGAGG-TCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AATTGAAAATACCTCAGCGTGTGTCTGAGGCTCAACTCACCT-TCGCAATATGAGTTGATTTTTT
106239914 GAAAGAAGAA
Statistics
Matches: 207, Mismatches: 17, Indels: 33
0.81 0.07 0.13
Matches are distributed among these distances:
80 32 0.15
81 4 0.02
88 55 0.27
89 24 0.12
90 28 0.14
91 20 0.10
92 26 0.13
93 18 0.09
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (88 bp):
AATTGAAAATACCTCAGCGTGTGTCTGAGGCTCAACTCACCTTCGCAATATGAGTTGATTTTTTT
GACAAACAAAATTGAAAAAAAGA
Found at i:106239776 original size:13 final size:14
Alignment explanation
Indices: 106239744--106239776 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
106239734 GATTTTTTTG
106239744 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
106239758 GAAAAACAGAATTT
1 GAAAAACAAAATTT
106239772 GAAAA
1 GAAAA
106239777 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:106240053 original size:68 final size:72
Alignment explanation
Indices: 106239873--106240667 Score: 465
Period size: 70 Copynumber: 10.8 Consensus size: 72
106239863 AAACACCTCA
* *
106239873 CTTGAGG-TCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAGAAGAAATTGAAAATACCT
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAA-AAATTGAAAATACCT
*
106239937 CAACGTGT
65 CAACGCGT
106239945 CTTGAGGCTCAACTCACCT-TCGCAATATGAGTTGATTTTTTGAAACAAAAATTG-AAATACCTC
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGAAAATACCTC
106240008 -A-GCGT
66 AACGCGT
*
106240013 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATA-C
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AA-ACAAAAATTGAAAATACC
*
106240077 TCAACGTGT
64 TCAACGCGT
*
106240086 CTTGAGG--CAACTCACCTCTCGCAATAT-A-TTGA-TTTTTGAAAAAAAAATTGAAAATTACCT
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGAAAA-TACCT
* *
106240146 CAGCGTGT
65 CAACGCGT
* *
106240154 C-T-AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATAGAA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAACAAAAATTG----A-AA
106240217 ATAAAACACCTC-A-GCGT
59 AT-----ACCTCAACGCGT
* * *
106240234 CTTGAGGTTCAACTCA-CTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAATTA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAACA-A-AAATTGAAAA-TA
** **
106240298 --AAAACAGAAT
62 CCTCAAC-GCGT
* * * * * * *** *****
106240308 -TTGAAAGGACCTCAACGTGTGGCCGAGACTCAACTCACCTCTCGCA-AT-ATGAGTTGATTTTG
1 CTTG--AGG--CTCAAC---T---C-A-CCTC-TCGCA-ATAT-G-AGTTGATTTTTTGAAACAA
* * *
106240370 AAA-AGCAAAATTGAAAATACCTCAGCGTGT
50 AAATTG-AAAAT-------ACCTCAACGCGT
**
106240400 CCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTGAAA-AAAGAATTTGAAAATA-C
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAA-AA-TTGAAAATACC
* *
106240462 TCAGCGTGT
64 TCAACGCGT
* *
106240471 C-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAAAAAAATTGAAATTACCT
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AACAAAAATTGAAAATACCT
106240534 C-A-GCGT
65 CAACGCGT
*
106240540 CTTGAGG-TCAACTCACCTCT--CAATATGAG-T-ATTTTTTTGAAAAAACAGAAATTGAAAATA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG---AAACAAAAATTGAAAATA
*
106240600 CCTCAACG-TT
62 CCTCAACGCGT
* * *
106240610 C-TGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAACATAAATTAAAAA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGAAAA
106240668 AACAAAATTG
Statistics
Matches: 570, Mismatches: 69, Indels: 170
0.70 0.09 0.21
Matches are distributed among these distances:
65 1 0.00
66 16 0.03
67 20 0.04
68 57 0.10
69 69 0.12
70 79 0.14
71 76 0.13
72 60 0.11
73 43 0.08
74 3 0.01
75 3 0.01
76 1 0.00
77 13 0.02
78 15 0.03
79 8 0.01
80 14 0.02
81 26 0.05
82 22 0.04
83 2 0.00
84 2 0.00
85 7 0.01
86 4 0.01
87 8 0.01
88 3 0.01
89 8 0.01
90 1 0.00
91 4 0.01
92 2 0.00
93 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (72 bp):
CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGAAAATACCTC
AACGCGT
Found at i:106240185 original size:139 final size:141
Alignment explanation
Indices: 106239873--106240654 Score: 581
Period size: 139 Copynumber: 5.3 Consensus size: 141
106239863 AAACACCTCA
*
106239873 CTTGAGG-TCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAGA-AGAAATTGAAAATACC
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACC
*
106239936 TCAACGTGTCTTGAGGCTCAACTCACCTTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGAA
66 TCAACGTGTCTTGAGGC-CAACTCACCTTCGCAATATGAGTTGATTTTTTGAAAAAAAAATTGAA
106240001 ATACCTCAGCGT
130 ATACCTCAGCGT
106240013 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATA-C
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACC
106240077 TCAACGTGTCTTGAGG-CAACTCACCTCTCGCAATAT-A-TTGA-TTTTTGAAAAAAAAATTGAA
66 TCAACGTGTCTTGAGGCCAACTCACCT-TCGCAATATGAGTTGATTTTTTGAAAAAAAAATTG-A
106240138 AATTACCTCAGCGT
129 AA-TACCTCAGCGT
* *
106240152 GTCT-AGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAATAG
1 CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTG----A-
* * *
106240215 AAATAAAACACCTC-A-GCGTCTTGAGGTTCAACTCA-CTCTCGCAATATGAGCTGATTTTTTTG
59 AAAT-----ACCTCAACGTGTCTTGAGG-CCAACTCACCT-TCGCAATATGAGTTGA-TTTTTTG
* * *** **
106240277 AAACACATAAATTAAAAATTAAAAACAGAAT
116 AAA-A-AAAAATT-GAAA-T-ACCTCAGCGT
* * * * * *
106240308 -TTGAAAGGACCTCAACGTGTGGCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA
1 CTTG--AGG--CTCAAC---T---C-A-CCTC-TCGCA-ATAT-G-AGT-TGA-TT--TTTTGAA
* **
106240372 A-AGCA-AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTG
46 AGA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGC-CAACTCACCT-TCGCAATATGAGTTG
*
106240434 ATTTTTTGAAAAAAGAATTTGAAAATA-CTCAGCGT
108 ATTTTTTGAAAAAA-AAATTG-AAATACCTCAGCGT
* * *
106240469 GTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAA-A-AAAAATTGAAATTA
1 CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAGACAGAAATTGAAAATA
* * *
106240531 CCTC-A-GCGTCTTGAGGTCAACTCACC-TCTCAATATGAG-T-ATTTTTTTGAAAAAACAGAAA
64 CCTCAACGTGTCTTGAGGCCAACTCACCTTCGCAATATGAGTTGA-TTTTTTG-AAAAA-A-AAA
*
106240591 TTGAAAATACCTCAACGT
125 TTG-AAATACCTCAGCGT
*
106240609 -TCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAA
1 CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
106240655 CATAAATTAA
Statistics
Matches: 528, Mismatches: 50, Indels: 129
0.75 0.07 0.18
Matches are distributed among these distances:
136 1 0.00
137 25 0.05
138 23 0.04
139 121 0.23
140 50 0.09
141 57 0.11
142 35 0.07
143 4 0.01
144 5 0.01
146 3 0.01
147 2 0.00
148 11 0.02
149 16 0.03
150 14 0.03
151 6 0.01
152 1 0.00
153 10 0.02
154 2 0.00
155 12 0.02
156 6 0.01
157 3 0.01
159 12 0.02
161 7 0.01
162 3 0.01
163 4 0.01
164 13 0.02
165 11 0.02
166 34 0.06
167 2 0.00
168 3 0.01
169 6 0.01
170 2 0.00
171 2 0.00
172 5 0.01
174 15 0.03
175 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (141 bp):
CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACC
TCAACGTGTCTTGAGGCCAACTCACCTTCGCAATATGAGTTGATTTTTTGAAAAAAAAATTGAAA
TACCTCAGCGT
Found at i:106240525 original size:455 final size:453
Alignment explanation
Indices: 106239671--106240994 Score: 1477
Period size: 455 Copynumber: 2.9 Consensus size: 453
106239661 CATAAATTGA
*
106239671 AAAAAAAGAAATTGAAAATACCTCAGCG-GTTCTGAGGCTGAACTCACCTTCGCAATATGAGTTG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTG-TCTGAGGCTCAACTCACCTTCGCAATATGAGTTG
* * *
106239735 ATTTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGC
65 ATTTTTTT-G-AAAACAAAA-TTG-AAAA-AGAA-ATGAAAATACCTCAGCGTCT---T-GAGGC
* * *
106239800 TCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACA-GAAT-----TGAAGAACAGAA
120 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATAAAAATGAAAAACAGAA
* * *
106239859 ATGGAAACACCTCAC-T-T---GAGGTCAACTCACCTCTCGCAATATGAGCTGATTTTTTG-AAA
185 ATTGAAACACCTCACGTGTGCCGAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA
* * **
106239918 GAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTCGCAATATGAGTTGATTT
249 GCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACC-TCGCAATATGAGTTGATTT
*
106239983 TTTGAAACAAAAATTG-AAATACCTCAGCGTCT-TGAGGCTCAACTCACCTCTCGCAATATGAGT
313 TTTGAAA-AAAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
106240046 TGATTTTTTGAAAGACAGAAATTGAAAATA-CTCAACGTGTCTTGAGG-CAACTCACCTCTCGCA
377 TGA-TTTTTGAAAGACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGTCAACTCACCTCT--CA
106240109 ATAT-A-T-TGATTTTTG
437 ATATGAGTAT-ATTTTTG
106240124 -AAAAAA-AAATTGAAAATTACCTCAGCGTGTCT-AGGCTCAACTCACCTATCGCAATATGAGTT
1 AAAAAAAGAAATTGAAAA-TACCTCAGCGTGTCTGAGGCTCAACTCACCT-TCGCAATATGAGTT
* * *
106240186 GATTTTTTTGAAAACAGAAATTGAAATAGAAAT-AAAACACCTCAGCGTCTTGAGGTTCAACTCA
64 GATTTTTTTGAAAACA-AAATTGAAAAAGAAATGAAAATACCTCAGCGTCTTGAGGCTCAACTCA
* *
106240250 -CTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAATTAAAAACAGAATTTGAAA
128 CCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAA-TAAAAATGAAAAACAGAAATTGAAA
*
106240314 GGACCTCAACGTGTGGCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAGCA-
192 -CACCTC-ACGTGT-GCCGAG-CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAG
106240377 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTG
253 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC-CTCGCAATATGAGTTGATTTTTTG
106240442 AAAAAAGAATTTGAAAATA-CTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
317 AAAAAA-AA-TTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
106240506 TTTTTGACAA-A-AAAAATTGAAATTACCTCAGCGTCTTGAGGTCAACTCACCTCTCAATATGAG
380 TTTTTGA-AAGACAAAAATTGAAAATACCTCAGCGTCTTGAGGTCAACTCACCTCTCAATATGAG
*
106240569 TATTTTTTTG
444 TATATTTTTG
* *
106240579 AAAAAACAGAAATTGAAAATACCTCAACGT-TCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAAA-AGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCT-TCGCAATATGAGTT
* * *
106240643 GA-TTTTTTG-AAACATAAATTAAAAAAACAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCA
64 GATTTTTTTGAAAACA-AAATT-GAAAAA-GAAA-TGAAAATACCTCAGC--GTCTTGAGGCTCA
* **** * **
106240706 ACTCACCTCTCGCAATATGAGTTGATTTGAAAAGAAGA-A-TTAAGGCAAAAATGAAAAACAGAA
123 ACTCACCTCTCGCAATATGAGCTGATTT-TTTTGAA-ACACATAA-ATAAAAATGAAAAACAGAA
* *
106240769 ATTGAAAATACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
185 ATTG-AAACACCTCA-CGTGTGCC-GA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* *
106240833 AAAACAGAAATT-AAAATACCTC-GCGTG-CCCGAGGCTCAGCTCACCTCTGCAATATGAGTTGA
246 AAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTC-GCAATATGAGTTGA
106240895 -TTTTTGAAAAGCATAAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
310 TTTTTTGAAAA--A-AAATTGAAAA-TACCTCAGCGTGT-CTGAGGCTCAACTCACCTCTCGCAA
* *
106240959 TATGAGTTGATTTTTTGAAAAAGCATAAATTGAAAA
370 TATGAGTTGA-TTTTTGAAAGA-CAAAAATTGAAAA
106240995 ACGAAAATTG
Statistics
Matches: 757, Mismatches: 51, Indels: 113
0.82 0.06 0.12
Matches are distributed among these distances:
441 33 0.04
442 13 0.02
443 2 0.00
446 15 0.02
447 1 0.00
448 19 0.03
449 8 0.01
450 11 0.01
451 29 0.04
452 43 0.06
453 7 0.01
454 14 0.02
455 112 0.15
456 52 0.07
457 112 0.15
458 11 0.01
459 25 0.03
460 39 0.05
461 58 0.08
462 85 0.11
463 49 0.06
464 9 0.01
466 10 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (453 bp):
AAAAAAAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTTCGCAATATGAGTTGA
TTTTTTTGAAAACAAAATTGAAAAAGAAATGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCT
CTCGCAATATGAGCTGATTTTTTTGAAACACATAAATAAAAATGAAAAACAGAAATTGAAACACC
TCACGTGTGCCGAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAA
AATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCGCAATATGAGTTGATTTTTTGAAAAAAAAT
TGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGA
CAAAAATTGAAAATACCTCAGCGTCTTGAGGTCAACTCACCTCTCAATATGAGTATATTTTTG
Found at i:106240722 original size:86 final size:87
Alignment explanation
Indices: 106240579--106240848 Score: 325
Period size: 95 Copynumber: 3.0 Consensus size: 87
106240569 TATTTTTTTG
* *
106240579 AAAAAACAGAAATTGAAAATACCTCAACGT-T-CTGAGGCTCAACTCACTTCTCGCAATATGAGT
1 AAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
106240642 TGATTTTTTGAAACATAAATTA
66 TGATTTTTTGAAACATAAATTA
106240664 AAAAAACA-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*** **
106240728 TGATTTGAAAAGAAGA-ATTAAGGCAAAA
66 TGATTT--TTTGAA-ACA-TAA---ATTA
*
106240756 ATGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 A--AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
106240821 GTTGA-TTTTTGAAAAACAGAAATTA
64 GTTGATTTTTTG--AAACATAAATTA
106240846 AAA
1 AAA
106240849 TACCTCGCGT
Statistics
Matches: 156, Mismatches: 14, Indels: 27
0.79 0.07 0.14
Matches are distributed among these distances:
84 20 0.13
85 9 0.06
86 37 0.24
88 6 0.04
89 4 0.03
90 3 0.02
92 4 0.03
93 3 0.02
94 12 0.08
95 58 0.37
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (87 bp):
AAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAACATAAATTA
Found at i:106240897 original size:69 final size:72
Alignment explanation
Indices: 106240757--106240994 Score: 365
Period size: 73 Copynumber: 3.3 Consensus size: 72
106240747 AAGGCAAAAA
106240757 TGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAG
106240822 TTGATTTT
65 TTGATTTT
*
106240830 TGAAAAACAGAAATT-AAAATACCTC-GCGTGCCCGAGGCTCAGCTCACCTCT-GCAATATGAGT
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
106240892 TGATTTT
66 TGATTTT
* * *
106240899 TGAAAAGCATAAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TGAAAAACAGAAATTGAAAA-TACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGA
106240964 GTTGATTTTT
64 GTTGA-TTTT
*
106240974 TGAAAAAGCATAAATTGAAAA
1 TGAAAAA-CAGAAATTGAAAA
106240995 ACGAAAATTG
Statistics
Matches: 152, Mismatches: 6, Indels: 11
0.90 0.04 0.07
Matches are distributed among these distances:
69 31 0.20
70 21 0.14
71 14 0.09
72 15 0.10
73 34 0.22
74 14 0.09
75 10 0.07
76 13 0.09
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (72 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTT
Found at i:106241092 original size:90 final size:90
Alignment explanation
Indices: 106240909--106241078 Score: 265
Period size: 90 Copynumber: 1.9 Consensus size: 90
106240899 TGAAAAGCAT
106240909 AAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
106240974 TGAAAAAGCATAAATTGAAAAACGA
66 TGAAAAAGCAGAAATTGAAAAACCA
106240999 AAATTGAAAA-TACCTCAGCGTGTGACCTGAGGC-CAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
106241062 TTTTGAAAGA-CAGAAAT
63 TTTTGAAAAAGCAGAAAT
106241079 AAAAACATCA
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
89 13 0.17
90 43 0.57
91 19 0.25
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (90 bp):
AAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TGAAAAAGCAGAAATTGAAAAACCA
Found at i:106248034 original size:8 final size:8
Alignment explanation
Indices: 106248000--106248051 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
106247990 TAGTGATGTG
*
106248000 AATAATAA
1 AATATTAA
*
106248008 AGTATATAA
1 AATAT-TAA
106248017 AATA-TAA
1 AATATTAA
106248024 AATATTAA
1 AATATTAA
*
106248032 AATATCAA
1 AATATTAA
*
106248040 AATATTAG
1 AATATTAA
106248048 AATA
1 AATA
106248052 ATAATAATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 23 0.64
9 6 0.17
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:106248041 original size:16 final size:15
Alignment explanation
Indices: 106248004--106248051 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
106247994 GATGTGAATA
*
106248004 ATAAAGTATATAAAAT
1 ATAAAATAT-TAAAAT
106248020 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
106248035 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
106248051 A
1 A
106248052 ATAATAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:106248244 original size:25 final size:26
Alignment explanation
Indices: 106248214--106248325 Score: 75
Period size: 29 Copynumber: 4.1 Consensus size: 26
106248204 ATTAAAAATG
*
106248214 TACATAATATAGTGTAAAA-A-ATACA
1 TACATAATATAAT-TAAAATATATACA
106248239 TACATAATATAATTAAAATATATACA
1 TACATAATATAATTAAAATATATACA
* * ** *
106248265 TAAGATAACATGTAGAAAAAAATATATATA
1 T-ACAT-A-ATATA-ATTAAAATATATACA
*
106248295 TAAATAATATAGTATTAAAGATATATACA
1 TACATAATATA--ATTAAA-ATATATACA
106248324 TA
1 TA
106248326 AAATAGTATA
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
24 5 0.07
25 13 0.19
26 6 0.09
27 7 0.10
28 6 0.09
29 17 0.25
30 13 0.19
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.31
Consensus pattern (26 bp):
TACATAATATAATTAAAATATATACA
Found at i:106248263 original size:22 final size:22
Alignment explanation
Indices: 106248167--106248272 Score: 69
Period size: 22 Copynumber: 4.9 Consensus size: 22
106248157 AATACTACAT
*
106248167 AAATATGTACAT-ATATAA--A
1 AAATATATACATAATATAATTA
* * *
106248186 AAATAAATACGTGATA-ATATTA
1 AAATATATACATAATATA-ATTA
* *
106248208 AAA-ATGTACATAATATAGTGTAAA
1 AAATATATACATAATATAAT-T--A
*
106248232 AAATACATACATAATATAATTA
1 AAATATATACATAATATAATTA
*
106248254 AAATATATACATAAGATAA
1 AAATATATACATAATATAA
106248273 CATGTAGAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
19 10 0.15
20 4 0.06
21 9 0.14
22 24 0.37
24 5 0.08
25 13 0.20
ACGTcount: A:0.58, C:0.06, G:0.07, T:0.30
Consensus pattern (22 bp):
AAATATATACATAATATAATTA
Found at i:106248326 original size:25 final size:24
Alignment explanation
Indices: 106248290--106248419 Score: 108
Period size: 23 Copynumber: 5.6 Consensus size: 24
106248280 AAAAAAATAT
*
106248290 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
106248315 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* * *
106248338 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATATAGTATTAAG
* * *
106248362 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* *
106248384 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAGTATTAAG
*
106248407 AAATATA-ATAATA
1 ATATATACATAATA
106248420 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
22 17 0.20
23 42 0.49
24 9 0.11
25 17 0.20
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:106248417 original size:23 final size:25
Alignment explanation
Indices: 106248374--106248419 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106248364 TATACCTAAT
106248374 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
106248399 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
106248420 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:106252162 original size:92 final size:88
Alignment explanation
Indices: 106252066--106252257 Score: 222
Period size: 92 Copynumber: 2.1 Consensus size: 88
106252056 GTGATGAATG
* *
106252066 TGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACCTGTATATATATG
1 TGAATGTGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAA-C---ATACATATG
106252131 TGTGATAAGGCCGAATGGCCAATGGGA
62 TGTGATAAGGCCGAATGGCCAATGGGA
* * * * * * *
106252158 TGAATTGAACTGCGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCGTATG
1 TGAA-TG---TGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATACATATG
*
106252223 TGTGATAAGGCCGAATGGCCAATGTGA
62 TGTGATAAGGCCGAATGGCCAATGGGA
106252250 TGAATGTG
1 TGAATGTG
106252258 AACATGCATA
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
88 2 0.02
91 2 0.02
92 40 0.47
93 2 0.02
95 1 0.01
96 39 0.45
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (88 bp):
TGAATGTGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATACATATGTGTG
ATAAGGCCGAATGGCCAATGGGA
Found at i:106252261 original size:47 final size:47
Alignment explanation
Indices: 106252054--106252267 Score: 270
Period size: 47 Copynumber: 4.5 Consensus size: 47
106252044 TTAGGATTTT
** * * * *
106252054 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
106252101 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
106252152 ATGGGATGAAT-TGAAC-TGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
106252197 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
106252244 ATGTGATGAATGTGAACATGCATA
1 ATGTGATGAATGTGAACATGCATA
106252268 GTTTCATGCA
Statistics
Matches: 147, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
45 35 0.24
46 5 0.03
47 67 0.46
49 1 0.01
50 4 0.03
51 35 0.24
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:106252468 original size:46 final size:46
Alignment explanation
Indices: 106252400--106252536 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
106252390 TATATATACA
* * *
106252400 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
106252446 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * * *
106252492 TATCTCATACACATTTCTCATTATCCATTCAGCCTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
106252537 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.31, G:0.07, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:106252574 original size:47 final size:47
Alignment explanation
Indices: 106252516--106252798 Score: 395
Period size: 47 Copynumber: 5.9 Consensus size: 47
106252506 TTCTCATTAT
* *
106252516 CCATTCAGCCTTACCACATATATACATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* *
106252563 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* **
106252610 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* **
106252657 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* *
106252704 CCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTTG
1 CCATTCGGCCTTAT--CAC--ATATATACATGTTCACATTCATCACATTGG
* **
106252755 CCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
106252799 AAAATCCTAA
Statistics
Matches: 217, Mismatches: 15, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
47 173 0.80
49 5 0.02
51 39 0.18
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
Found at i:106261974 original size:40 final size:40
Alignment explanation
Indices: 106261908--106262074 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
106261898 AAATTGAATG
* * *
106261908 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
106261947 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
106261987 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
106262027 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
106262067 ATATCCGG
1 ATATCCGG
106262075 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:106263563 original size:29 final size:28
Alignment explanation
Indices: 106263506--106263590 Score: 107
Period size: 29 Copynumber: 3.0 Consensus size: 28
106263496 TACCTATATC
* * *
106263506 TGGCCCACTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
106263534 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
106263563 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
106263591 CTATCACATA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 24 0.49
29 25 0.51
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:106267973 original size:29 final size:29
Alignment explanation
Indices: 106267910--106268017 Score: 130
Period size: 29 Copynumber: 3.8 Consensus size: 29
106267900 TTCACATACC
* * * *
106267910 TGTATCTGGCCCACTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
106267938 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
106267967 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
106267996 TTTATATGGCCTATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
106268018 GTTACATTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.23
29 51 0.74
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:106268015 original size:58 final size:57
Alignment explanation
Indices: 106267907--106268017 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
106267897 AATTTCACAT
* *
106267907 ACCTGTATCTGGCCCACTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
106267964 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCTATTAGGCCCA
1 ACCTGTATATGGCCCACTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
106268018 GTTACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:106268215 original size:18 final size:18
Alignment explanation
Indices: 106268192--106268228 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
106268182 AACCTATTGA
106268192 TCTCCCCCTTACGAGTGT
1 TCTCCCCCTTACGAGTGT
*
106268210 TCTCCCCCTTACTAGTGT
1 TCTCCCCCTTACGAGTGT
106268228 T
1 T
106268229 TGCGCACTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.38, G:0.14, T:0.38
Consensus pattern (18 bp):
TCTCCCCCTTACGAGTGT
Found at i:106269565 original size:16 final size:15
Alignment explanation
Indices: 106269544--106269589 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 15
106269534 AATTTGGGAT
106269544 TTTGAGATTTTTGGA
1 TTTGAGATTTTTGGA
106269559 CTTTGAGATTTTTGGA
1 -TTTGAGATTTTTGGA
*
106269575 TTTCGGGATTTTTGG
1 TTT-GAGATTTTTGG
106269590 GGCGTTACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 3 0.11
16 25 0.89
ACGTcount: A:0.15, C:0.04, G:0.28, T:0.52
Consensus pattern (15 bp):
TTTGAGATTTTTGGA
Found at i:106272595 original size:45 final size:45
Alignment explanation
Indices: 106272531--106272621 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
106272521 GAACTATGTG
*
106272531 ATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGATATATGGGAC
1 ATCTAAACTCATTAAGTTGTGGTATGAGTTCATGATATATGGGAC
* * * *
106272576 ATCTAAGCTCATTGAGTTGTGGTATGAGTTCATGATGTATGTGAC
1 ATCTAAACTCATTAAGTTGTGGTATGAGTTCATGATATATGGGAC
106272621 A
1 A
106272622 CATTTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.36
Consensus pattern (45 bp):
ATCTAAACTCATTAAGTTGTGGTATGAGTTCATGATATATGGGAC
Found at i:106273914 original size:148 final size:148
Alignment explanation
Indices: 106273656--106274105 Score: 828
Period size: 148 Copynumber: 3.0 Consensus size: 148
106273646 AGGACATAGA
*
106273656 CGTGTGCCCAAGCCGTGTGAAGTCTGTACTTAATTTTTGGAATTTAATTCGCCACACTGCCTAAG
1 CGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCACACTGCCTAAG
* *
106273721 CACACGGACGTGTGTCTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTCAGAGAGTTAC
66 CACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTCAGAGAGTTAC
*
106273786 ACAAGATGAGGACACGGG
131 ACAAGCTGAGGACACGGG
* *
106273804 CGTGTGCCCAAGCCATGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCACATTGCCTAAG
1 CGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCACACTGCCTAAG
106273869 CACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTCAGAGAGTTAC
66 CACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTCAGAGAGTTAC
*
106273934 ACAAGCTGAGGACATGGG
131 ACAAGCTGAGGACACGGG
106273952 CGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCACACTGCCTAAG
1 CGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCACACTGCCTAAG
*
106274017 CACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGGTTGATAACGTCATAGTCAGAGAGTTAC
66 CACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTCAGAGAGTTAC
106274082 ACAAGCTGAGGACACGGG
131 ACAAGCTGAGGACACGGG
106274100 CGTGTG
1 CGTGTG
106274106 ACTCTCCAAA
Statistics
Matches: 291, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
148 291 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (148 bp):
CGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCACACTGCCTAAG
CACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTCAGAGAGTTAC
ACAAGCTGAGGACACGGG
Found at i:106287469 original size:46 final size:46
Alignment explanation
Indices: 106287416--106287591 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
106287406 TATTTGGGCA
106287416 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
106287462 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
106287509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
106287555 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106287592 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:106287571 original size:93 final size:93
Alignment explanation
Indices: 106287412--106287583 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106287402 GGGATATTTG
* *
106287412 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106287477 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
106287505 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106287570 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106287584 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:106290556 original size:15 final size:15
Alignment explanation
Indices: 106290536--106290604 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
106290526 GTATCTTGGG
106290536 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
106290551 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
106290566 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
106290581 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
106290596 TTTCTTTAT
1 TTTCTTTAT
106290605 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:106290605 original size:30 final size:30
Alignment explanation
Indices: 106290527--106290614 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
106290517 CATAGTATCG
* * * *
106290527 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
106290557 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
106290587 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
106290615 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:106293052 original size:46 final size:46
Alignment explanation
Indices: 106292999--106293174 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
106292989 TATTTGGGCA
106292999 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
106293045 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
106293092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
106293138 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
106293175 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:106293154 original size:93 final size:93
Alignment explanation
Indices: 106292995--106293166 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106292985 GGGATATTTG
* *
106292995 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106293060 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
106293088 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
106293153 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
106293167 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:106295997 original size:46 final size:46
Alignment explanation
Indices: 106295930--106296095 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
106295920 TAACCCACCC
* *
106295930 ATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCT
*
106295976 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-T
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCT
* * * * *
106296025 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCT
106296069 ATAAGTGAACTCGGACTCAACTCAACG
1 ATAAGTGAACTCGGACTCAACTCAACG
106296096 TTCGGATGCT
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 53 0.53
47 28 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCT
Found at i:106296045 original size:93 final size:91
Alignment explanation
Indices: 106295936--106296104 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 91
106295926 ACCCATAAGT
* * *
106295936 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106296001 CGAGTTCGGATGCCTAGTTACATTTCAC
66 C--GTTCGGATGCCTAGTTACATTTCAC
* *
106296029 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106296094 CGTTCGGATGC
66 CGTTCGGATGC
106296105 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 10 0.14
93 61 0.86
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGTTCGGATGCCTAGTTACATTTCAC
Found at i:106296120 original size:44 final size:44
Alignment explanation
Indices: 106295928--106296112 Score: 121
Period size: 46 Copynumber: 4.1 Consensus size: 44
106295918 TGTAACCCAC
* * ** * *
106295928 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAAC-AGTTC-GGAATGCGCAA
*
106295974 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTA
1 CCATAAGTGAACTCGGACTCAACTCAAC-AGTTCGGAATGCGC-A---A
* * * *
106296021 -CATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAAC-AGTTCGGA-ATGCGCAA
*
106296067 CCATAAGTGAACTCGGACTCAACTCAAC-GTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACAGTTCGGAATGCGCAA
106296109 CCAT
1 CCAT
106296113 CCTAGTGACA
Statistics
Matches: 112, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
42 9 0.08
43 1 0.01
44 9 0.08
45 4 0.04
46 52 0.46
47 30 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACAGTTCGGAATGCGCAA
Found at i:106296560 original size:30 final size:30
Alignment explanation
Indices: 106296526--106296585 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
106296516 ATTTAATACG
106296526 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
106296556 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
106296586 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:106298640 original size:40 final size:39
Alignment explanation
Indices: 106298513--106298642 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
106298503 ATGCTGGAAA
* *
106298513 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
106298553 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
106298593 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
106298633 TTATATCCGG
1 TTATATCCGG
106298643 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:106300592 original size:29 final size:29
Alignment explanation
Indices: 106300560--106300637 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
106300550 ATACCCTCCG
** *
106300560 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
106300589 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
106300618 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
106300638 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:106309892 original size:40 final size:39
Alignment explanation
Indices: 106309765--106309894 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
106309755 ATGCTGGAAA
* *
106309765 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
106309805 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
106309845 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
106309885 TTATATCCGG
1 TTATATCCGG
106309895 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:106315273 original size:45 final size:45
Alignment explanation
Indices: 106315209--106315415 Score: 240
Period size: 45 Copynumber: 4.6 Consensus size: 45
106315199 TATAGTATGG
** * *
106315209 TACTATTCAAGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
* * * * * *
106315254 TACTATTAGGGCTTTTGAGCCTAGTAGGCTATGATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
* *
106315299 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATACTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
* *
106315344 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
**
106315389 TGA-TA-TCGGG-CTTTGATTCTAGCAGGC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGC
106315416 GAAATGCCAG
Statistics
Matches: 144, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
43 14 0.10
44 5 0.03
45 124 0.86
46 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
Found at i:106323277 original size:93 final size:93
Alignment explanation
Indices: 106323165--106323336 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106323155 CGCCCATAAG
* *
106323165 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106323230 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
106323258 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106323323 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
106323337 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:106323333 original size:46 final size:46
Alignment explanation
Indices: 106323158--106323333 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
106323148 TGTAACCCGC
* * *
106323158 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
106323204 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
106323254 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
106323297 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
106323334 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:106330768 original size:40 final size:40
Alignment explanation
Indices: 106330713--106330880 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
106330703 TGAATGATAC
* *
106330713 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
106330753 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
106330793 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
106330833 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
106330873 CC-GGCTAA
1 CCGGGCTAA
106330881 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:106340339 original size:30 final size:29
Alignment explanation
Indices: 106340245--106340346 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
106340235 TATAGTGAAT
* * *
106340245 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
106340274 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
106340302 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
106340332 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106340347 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:106348197 original size:30 final size:29
Alignment explanation
Indices: 106348103--106348204 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
106348093 TATAGTGAAT
* * *
106348103 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
106348132 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
106348160 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
106348190 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106348205 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:106349875 original size:40 final size:40
Alignment explanation
Indices: 106349820--106349987 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
106349810 TGAATGATAC
* *
106349820 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
106349860 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
106349900 CCAGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
106349940 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
106349980 CC-GGCTAA
1 CCGGGCTAA
106349988 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 6 0.06
40 96 0.92
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:106349956 original size:80 final size:79
Alignment explanation
Indices: 106349823--106349987 Score: 206
Period size: 80 Copynumber: 2.1 Consensus size: 79
106349813 ATGATACCCG
* * ** *
106349823 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTG
1 GGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-GTG
*
106349887 CGAGTTGTTATATCC
65 CGAGTGGTTATATCC
* * *
106349902 AGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTG
1 -GGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTGTG
**
106349967 CTTGTGGTTATATCC
65 CGAGTGGTTATATCC
106349982 GGCTAA
1 GGCTAA
106349988 ATTCCGAAGA
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 64 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
GGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGC
GAGTGGTTATATCC
Found at i:106355171 original size:13 final size:13
Alignment explanation
Indices: 106355153--106355179 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
106355143 GAAGTAATCG
106355153 CACACGGGCGTGT
1 CACACGGGCGTGT
106355166 CACACGGGCGTGT
1 CACACGGGCGTGT
106355179 C
1 C
106355180 CCAGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:106355264 original size:25 final size:25
Alignment explanation
Indices: 106355230--106355280 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
106355220 TTTTGAGGGT
106355230 TCTTAGGCATTCAAAAGCCTATAAA
1 TCTTAGGCATTCAAAAGCCTATAAA
106355255 TCTTAGGCATTCAAAAGCCTATAAA
1 TCTTAGGCATTCAAAAGCCTATAAA
106355280 T
1 T
106355281 ACACCCTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (25 bp):
TCTTAGGCATTCAAAAGCCTATAAA
Found at i:106357211 original size:13 final size:13
Alignment explanation
Indices: 106357193--106357220 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
106357183 TCTAAGTAAA
106357193 CCGAAATTGGAAT
1 CCGAAATTGGAAT
106357206 CCGAAATTGGAAT
1 CCGAAATTGGAAT
106357219 CC
1 CC
106357221 AATTATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (13 bp):
CCGAAATTGGAAT
Found at i:106357775 original size:41 final size:42
Alignment explanation
Indices: 106357705--106357785 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 42
106357695 GGTCACACCC
106357705 CCCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACG
1 CCCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACG
106357747 CCCGTGTGAACAGG-CATGTGCCTCACATGGTCTTAGACA
1 CCCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACA
106357786 TGATCGTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
41 25 0.64
42 14 0.36
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (42 bp):
CCCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACG
Found at i:106357794 original size:41 final size:42
Alignment explanation
Indices: 106357706--106357795 Score: 146
Period size: 41 Copynumber: 2.2 Consensus size: 42
106357696 GTCACACCCC
*
106357706 CCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACGC
1 CCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACGA
*
106357748 CCGTGTGAACAGG-CATGTGCCTCACATGGTCTTAGACATGA
1 CCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACGA
*
106357789 TCGTGTG
1 CCGTGTG
106357796 TCTAGGCCGT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
41 32 0.71
42 13 0.29
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (42 bp):
CCGTGTGAACAGGCCATGTGCCTCACATGGTCTTAGACACGA
Found at i:106357875 original size:66 final size:67
Alignment explanation
Indices: 106357790--106357928 Score: 208
Period size: 66 Copynumber: 2.1 Consensus size: 67
106357780 TAGACATGAT
* * *
106357790 CGTGTGTCTAGGCCGTGGCAAAACAAGACATAGCTACTGA-TTAATCACACTGCTACAAGACACG
1 CGTGTGTCTAAGCCATGGCAAAACAAGACATAGCTACTGACTTAATCACACGGCTACAAGACACG
106357854 CC
66 CC
* * * *
106357856 CGTGTGTGTAAGCCATGGCAAAATAGGACATAGCTACTGACTTGATCACACGGCTACAAGACACG
1 CGTGTGTCTAAGCCATGGCAAAACAAGACATAGCTACTGACTTAATCACACGGCTACAAGACACG
106357921 CC
66 CC
106357923 CGTGTG
1 CGTGTG
106357929 CCTTGGCCGT
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
66 35 0.54
67 30 0.46
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (67 bp):
CGTGTGTCTAAGCCATGGCAAAACAAGACATAGCTACTGACTTAATCACACGGCTACAAGACACG
CC
Found at i:106363068 original size:2 final size:2
Alignment explanation
Indices: 106363061--106363085 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
106363051 GAGACTAGTC
106363061 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
106363086 CATGTCATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106367360 original size:28 final size:28
Alignment explanation
Indices: 106367328--106367425 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 28
106367318 AAAACAATAT
106367328 AAATATATAAAATATATTAAAAAATTAA
1 AAATATATAAAATATATTAAAAAATTAA
*
106367356 AAATATATATACAA-ATA-TACAAAAATGAA
1 AAATATATA-A-AATATATTA-AAAAATTAA
* * *
106367385 AAA-ATATAAAAAATTATT-GAAATTTCAA
1 AAATATATAAAATA-TATTAAAAAATT-AA
106367413 AAATAT-TAAAATA
1 AAATATATAAAATA
106367426 ATGAAATAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
26 2 0.04
27 6 0.11
28 29 0.51
29 18 0.32
30 2 0.04
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (28 bp):
AAATATATAAAATATATTAAAAAATTAA
Found at i:106367364 original size:30 final size:29
Alignment explanation
Indices: 106367328--106367402 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
106367318 AAAACAATAT
*
106367328 AAATATATAAAATATATTAAAAAATTAAA
1 AAATATATAAAATATATTAAAAAATGAAA
*
106367357 AATATATATACAAATATA--CAAAAATGAAA
1 AA-ATATATA-AAATATATTAAAAAATGAAA
*
106367386 AAATATAAAAAAT-TATT
1 AAATATATAAAATATATT
106367403 GAAATTTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 6 0.15
29 13 0.33
30 7 0.18
31 7 0.18
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (29 bp):
AAATATATAAAATATATTAAAAAATGAAA
Found at i:106367374 original size:38 final size:37
Alignment explanation
Indices: 106367316--106367396 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 37
106367306 TTATAAAACG
*
106367316 TAAAAACAATATAAATATATA-AAATATATTAAAAAAT-
1 TAAAAACAATATAAATATATACAAA-A-ATGAAAAAATA
*
106367353 TAAAAATATATATACAA-ATATACAAAAATGAAAAAATA
1 TAAAAACA-ATATA-AATATATACAAAAATGAAAAAATA
106367391 TAAAAA
1 TAAAAA
106367397 ATTATTGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
37 16 0.42
38 17 0.45
39 5 0.13
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (37 bp):
TAAAAACAATATAAATATATACAAAAATGAAAAAATA
Found at i:106367379 original size:21 final size:18
Alignment explanation
Indices: 106367328--106367425 Score: 60
Period size: 18 Copynumber: 5.3 Consensus size: 18
106367318 AAAACAATAT
106367328 AAATATATAAAATATATTA
1 AAATATA-AAAATATATTA
*
106367347 AAAAATTAAAAATATATATA
1 AAATA-TAAAAATATAT-TA
*
106367367 CAAATATACAAAA-ATGA-AA
1 -AAATATA-AAAATAT-ATTA
*
106367386 AAATATAAAAA-ATTATTG
1 AAATATAAAAATA-TATTA
* *
106367404 AAATTTCAAAA-ATATTA
1 AAATATAAAAATATATTA
106367421 AAATA
1 AAATA
106367426 ATGAAATAAC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
17 14 0.22
18 18 0.29
19 14 0.22
20 8 0.13
21 9 0.14
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATATAAAAATATATTA
Found at i:106367596 original size:10 final size:10
Alignment explanation
Indices: 106367581--106367727 Score: 75
Period size: 9 Copynumber: 15.3 Consensus size: 10
106367571 GGAATGACAT
106367581 AAAATTATAA
1 AAAATTATAA
106367591 AAAATTATTAGA
1 AAAATTA-TA-A
*
106367603 ATAA-TA-AA
1 AAAATTATAA
106367611 AAAATTAT-A
1 AAAATTATAA
*
106367620 TAAATTA-AA
1 AAAATTATAA
106367629 AAAA-T-T-A
1 AAAATTATAA
*
106367636 AAAATTGT-A
1 AAAATTATAA
*
106367645 AAAATTACAA
1 AAAATTATAA
*
106367655 AAAGA-TATTTA
1 AAA-ATTA-TAA
*
106367666 AAAA-TATAG
1 AAAATTATAA
*
106367675 AATATTATAA
1 AAAATTATAA
106367685 AAATATTATAA
1 AAA-ATTATAA
*
106367696 AAAAATATAGA
1 AAAATTATA-A
*
106367707 AAAATGA-AA
1 AAAATTATAA
106367716 AAAA-TATAA
1 AAAATTATAA
106367725 AAA
1 AAA
106367728 TTACAAATTA
Statistics
Matches: 105, Mismatches: 17, Indels: 31
0.69 0.11 0.20
Matches are distributed among these distances:
7 5 0.05
8 7 0.07
9 36 0.34
10 28 0.27
11 25 0.24
12 4 0.04
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (10 bp):
AAAATTATAA
Done.