Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 347 of 770
Found at i:106367638 original size:25 final size:25
Alignment explanation
Indices: 106367610--106367657 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106367600 AGAATAATAA
*
106367610 AAAAATTATATAAATTAAAAAAATT
1 AAAAATTATAAAAATTAAAAAAATT
* *
106367635 AAAAATTGTAAAAATTACAAAAA
1 AAAAATTATAAAAATTAAAAAAA
106367658 GATATTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAATTATAAAAATTAAAAAAATT
Found at i:106367640 original size:16 final size:17
Alignment explanation
Indices: 106367607--106367656 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
106367597 ATTAGAATAA
*
106367607 TAAAAAAATTATATAAAT
1 TAAAAAAATTACA-AAAT
106367625 TAAAAAAATTA-AAAAT
1 TAAAAAAATTACAAAAT
**
106367641 TGTAAAAATTACAAAA
1 TAAAAAAATTACAAAA
106367657 AGATATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 13 0.45
17 5 0.17
18 11 0.38
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (17 bp):
TAAAAAAATTACAAAAT
Found at i:106367648 original size:18 final size:18
Alignment explanation
Indices: 106367582--106367635 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 18
106367572 GAATGACATA
106367582 AAATTATAAAAAATTAT-T
1 AAATTA-AAAAAATTATAT
106367600 AGAATAATAAAAAAATTATAT
1 A-AAT--TAAAAAAATTATAT
106367621 AAATTAAAAAAATTA
1 AAATTAAAAAAATTA
106367636 AAAATTGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
18 12 0.38
19 3 0.09
20 13 0.41
21 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATTAAAAAAATTATAT
Found at i:106367709 original size:11 final size:10
Alignment explanation
Indices: 106367606--106367727 Score: 58
Period size: 10 Copynumber: 12.7 Consensus size: 10
106367596 TATTAGAATA
106367606 ATAAAAAAAT
1 ATAAAAAAAT
* *
106367616 -TATATAAAT
1 ATAAAAAAAT
106367625 -TAAAAAAAT
1 ATAAAAAAAT
*
106367634 -T-AAAAATT
1 ATAAAAAAAT
* *
106367642 GT-AAAAATT
1 ATAAAAAAAT
* *
106367651 ACAAAAAGAT
1 ATAAAAAAAT
**
106367661 ATTTAAAAAT
1 ATAAAAAAAT
* * *
106367671 ATAGAATATT
1 ATAAAAAAAT
*
106367681 ATAAAAATATT
1 ATAAAAA-AAT
106367692 ATAAAAAAAT
1 ATAAAAAAAT
*
106367702 ATAGAAAAAT
1 ATAAAAAAAT
*
106367712 -GAAAAAAAT
1 ATAAAAAAAT
106367721 ATAAAAA
1 ATAAAAA
106367728 TTACAAATTA
Statistics
Matches: 84, Mismatches: 24, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
8 6 0.07
9 30 0.36
10 38 0.45
11 10 0.12
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (10 bp):
ATAAAAAAAT
Found at i:106367718 original size:31 final size:29
Alignment explanation
Indices: 106367665--106367727 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
106367655 AAAGATATTT
* *
106367665 AAAAATATAGAATATTATAAAAATATTATAA
1 AAAAATATAGAAAATGATAAAAA-A-TATAA
106367696 AAAAATATAGAAAAATGA-AAAAAATATAA
1 AAAAATATAG-AAAATGATAAAAAATATAA
106367725 AAA
1 AAA
106367728 TTACAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.28
30 1 0.03
31 15 0.52
32 5 0.17
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (29 bp):
AAAAATATAGAAAATGATAAAAAATATAA
Found at i:106368106 original size:19 final size:19
Alignment explanation
Indices: 106368061--106368108 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
106368051 TTAAATTTTC
106368061 TTTTTAAT-TTTTATTTAA
1 TTTTTAATATTTTATTTAA
*
106368079 TTTATAATATTTTA-TTAA
1 TTTTTAATATTTTATTTAA
106368097 TTTTTAAATATT
1 TTTTT-AATATT
106368109 ATACAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTAATATTTTATTTAA
Found at i:106368188 original size:24 final size:24
Alignment explanation
Indices: 106368144--106368189 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
106368134 CTTACCTAAT
* *
106368144 TTTTTTATAATTTATATATTTTTC
1 TTTTTAATAATTTATACATTTTTC
106368168 TTTTTAATAAATTT-TACATTTT
1 TTTTTAAT-AATTTATACATTTT
106368190 AATAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTTAATAATTTATACATTTTTC
Found at i:106368256 original size:50 final size:50
Alignment explanation
Indices: 106368145--106368256 Score: 122
Period size: 49 Copynumber: 2.2 Consensus size: 50
106368135 TTACCTAATT
*
106368145 TTTTTATAATTTATATATTTTTCTTTTTAATAAATTTTACATTTTAATAAA
1 TTTTTAT-ATTTATATATTTTTCTATTTAATAAATTTTACATTTTAATAAA
* * * *
106368196 TTTATATATTTATATA-TTTT-TATTT-ATAACTTTTTACACTTTTTATATA
1 TTTTTATATTTATATATTTTTCTATTTAATAA-ATTTTACA-TTTTAATAAA
106368245 TTTTTAGTATTT
1 TTTTTA-TATTT
106368257 TTAAAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
47 4 0.08
48 11 0.21
49 17 0.33
50 14 0.27
51 6 0.12
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (50 bp):
TTTTTATATTTATATATTTTTCTATTTAATAAATTTTACATTTTAATAAA
Found at i:106368311 original size:18 final size:18
Alignment explanation
Indices: 106368290--106368325 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
106368280 AACTATCTAT
* *
106368290 ATTTTTTATTATTTTAAA
1 ATTTTTAATGATTTTAAA
106368308 ATTTTTAATGATTTTAAA
1 ATTTTTAATGATTTTAAA
106368326 TATTAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTTAATGATTTTAAA
Found at i:106369692 original size:29 final size:30
Alignment explanation
Indices: 106369643--106369703 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
106369633 CAATACAATA
* *
106369643 TTATATATGAATTTTGATTTTA-TGTAATT
1 TTATATATAAATATTGATTTTACTGTAATT
*
106369672 TTATATATAAAATATTG-TTTTACTTTAATT
1 TTATATAT-AAATATTGATTTTACTGTAATT
106369702 TT
1 TT
106369704 CACAAGATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (30 bp):
TTATATATAAATATTGATTTTACTGTAATT
Found at i:106370494 original size:29 final size:30
Alignment explanation
Indices: 106370445--106370505 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
106370435 CAATACAATA
* *
106370445 TTATATATGAATTTTGATTTTA-TGTAATT
1 TTATATATAAATATTGATTTTACTGTAATT
*
106370474 TTATATATAAAATATTG-TTTTACTTTAATT
1 TTATATAT-AAATATTGATTTTACTGTAATT
106370504 TT
1 TT
106370506 TACAAGTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (30 bp):
TTATATATAAATATTGATTTTACTGTAATT
Found at i:106371296 original size:29 final size:30
Alignment explanation
Indices: 106371247--106371307 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
106371237 CAATACAATA
* *
106371247 TTATATATGAATTTTGATTTTA-TGTAATT
1 TTATATATAAATATTGATTTTACTGTAATT
*
106371276 TTATATATAAAATATTG-TTTTACTTTAATT
1 TTATATAT-AAATATTGATTTTACTGTAATT
106371306 TT
1 TT
106371308 CACAAGTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (30 bp):
TTATATATAAATATTGATTTTACTGTAATT
Found at i:106372034 original size:804 final size:805
Alignment explanation
Indices: 106369392--106372606 Score: 5771
Period size: 804 Copynumber: 4.0 Consensus size: 805
106369382 TCGATATAGT
*
106369392 ACTATTTTAACTATACATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTTAT
1 ACTATTTTAACTATACATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
* *
106369457 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGCTTTCATTTATACATTTGAATC
66 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
106369522 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
131 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
106369587 GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
196 GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
*
106369652 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGATACTAA
261 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGTTACTAA
* *
106369717 CTCAATTATCGATATAGCACTATTTTAACTATACATATTGCAACACGAATAATTATATATATTTA
326 CTCAATTATCGATATAGCACTATTTTAACTATACATATTACAACACGAATAATTATATATATCTA
*
106369782 ATAT--AAA-AAATTGATGTATTTATTCTTTTAAATGTGTATC-GTTAAATCGAAATTAAAGTTT
391 ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTA-CAGTTAAATCAAAATTAAAGTTT
*
106369843 CATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAA-AACATAAA
455 CATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAAGTACATAAA
*
106369907 TCTACATTGCATATTGGATCAAAGTTCATATATAGTTTTGAGATTTATCTCATTGTTTGATTGTG
520 TCTACATTGCATATTGGATCAAAGTTCATATATAGTTTTGAGATTTATCTCATAGTTTGATTGTG
106369972 GAATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTCCTC
585 GAATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTCCTC
106370037 TTTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAAAAACCCTTTTATA
650 TTTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAAAAA-CCTTTTATA
*
106370102 TACACATTTTTGGATTAGAACAAATGGGGTTCTTCCTCTCTTCCACTCTCATATCTATCCATCCA
714 TACACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCCA
106370167 TCATACACATCATTAGGCTTTTTTTCCC
779 TCATACACATCATTAGGCTTTTTTT-CC
*
106370195 ACTATTTTAACTATACATATTACAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
1 ACTATTTTAACTATACATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
* *
106370260 GTATTTATTCTTTCAAATGTGTATAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
66 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
106370325 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTC-TTTTTTTCTTTCTAAAT
131 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
*
106370389 GATAGTTTGATGAGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
196 GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
*
106370454 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTTACAAGTTACTAA
261 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGTTACTAA
*
106370519 CTCAATTATCGATATAGCACTATTTTAACTATAAATATTACAACACGAATAATTATATATATCTA
326 CTCAATTATCGATATAGCACTATTTTAACTATACATATTACAACACGAATAATTATATATATCTA
* * *
106370584 ACATAAAAATAAATTGATTTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTT
391 ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTC
106370649 ATTATACATTTGAA-C-----CAAAGTTCTATGTATATAATTGCACCAAATCAAAGTACATAAAT
456 ATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAAGTACATAAAT
* *
106370708 CTACATTGCATATTGGATCAAATTTCATATATAGTTTTGAGATTTATCTCATTGTTTGATTGTGG
521 CTACATTGCATATTGGATCAAAGTTCATATATAGTTTTGAGATTTATCTCATAGTTTGATTGTGG
*
106370773 AATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTCCTGT
586 AATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTCCTCT
106370838 TTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAAAAACCCTTTTATAT
651 TTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAAAAA-CCTTTTATAT
*
106370903 ATACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCCAT
715 ACACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCCAT
106370968 CATACACATCATTAGGCTTTTTTTTTCC
780 CATACACATCATTAGGC--TTTTTTTCC
* * *
106370996 ATTATTTTAACTATACATATTGCAATACGAATAATTATATATATTTAATACAAAAATAAATTGAT
1 ACTATTTTAACTATACATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
106371061 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
66 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
106371126 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
131 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
*
106371191 GATAGTTTGATGGGATAAATTTCTAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
196 GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
106371256 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGTTACTAA
261 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGTTACTAA
* *
106371321 CTCAATTATCGATATAGCTCTATTTTAACTATACATATTGCAACACGAATAATTATATATATCTA
326 CTCAATTATCGATATAGCACTATTTTAACTATACATATTACAACACGAATAATTATATATATCTA
106371386 ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTC
391 ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTC
*
106371451 ATTATACATTTAAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAAGTACATAAAT
456 ATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAAGTACATAAAT
* *
106371516 CTACATTGCATATTGGATCAAAATTCATATATAGTTTTGAGATTTATCTCAAAGTTTGATTGTGG
521 CTACATTGCATATTGGATCAAAGTTCATATATAGTTTTGAGATTTATCTCATAGTTTGATTGTGG
*
106371581 AATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTTCTCT
586 AATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTCCTCT
*
106371646 TTTA-TTTTTGTTATACATAAATATATTGATCATAGTAGGGATTTTACCAAGAAA-CTTTTATAT
651 TTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAA-AAACCTTTTATAT
* *
106371709 ACACATTTTTGGATTAGAACAAATGGGGTTCTTTTTCTCTTCCACTCTGATATCTATCCATCCAT
715 ACACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCCAT
106371774 CATACACATCATTAGGCTTTTTTTCC
780 CATACACATCATTAGGCTTTTTTTCC
*
106371800 ACTATTTTAACTATATATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
1 ACTATTTTAACTATACATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
106371865 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
66 GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
106371930 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
131 ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
106371995 GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
196 GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
* * *
106372060 AATTTTTATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCCCAAGTTGCTAA
261 AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGTTACTAA
*
106372125 CTCAATTATCGATATAGCACTATTTTAACTATACATATTACAACATGAATAATTATATATATCTA
326 CTCAATTATCGATATAGCACTATTTTAACTATACATATTACAACACGAATAATTATATATATCTA
106372190 ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTC
391 ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTC
*
106372255 ATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCAGCAAATCAAAGT-CAATAAA
456 ATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAAGTAC-ATAAA
*
106372319 TCTACATTGCATATTGGATCAAAGTTCATATACAGTTTTGAGATTTATCTCATAGTTTGATTGTG
520 TCTACATTGCATATTGGATCAAAGTTCATATATAGTTTTGAGATTTATCTCATAGTTTGATTGTG
* *
106372384 GAATTCGTCCATTTCGATGAGATTGGTCCTTCAACAATTCACCGAGTATAGCTTTCTCTTTT-CT
585 GAATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCT-TTTTCCT
* *
106372448 CTTTTA-TTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTTCCAAGAACCCTTTTAT
649 CTTTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAA-AAACCTTTTAT
106372512 ATACACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCC
713 ATACACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCC
* * *
106372577 ATCAGACACATTATTAGGTTTTTTTTCC
778 ATCATACACATCATTAGGCTTTTTTTCC
106372605 AC
1 AC
106372607 CATGGTAGCT
Statistics
Matches: 2322, Mismatches: 72, Indels: 34
0.96 0.03 0.01
Matches are distributed among these distances:
799 34 0.01
800 281 0.12
801 173 0.07
802 497 0.21
803 173 0.07
804 690 0.30
805 165 0.07
806 88 0.04
807 45 0.02
808 176 0.08
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (805 bp):
ACTATTTTAACTATACATATTGCAATACGAATAATTATATATATCTAATATAAAAATAAATTGAT
GTATTTATTCTTTTAAATGTGTACAGTTGAATCAAAATTAAAGTTTTCATGTATACATTTGAATC
ATAATCAAAATTCCAAGTATATAATTGCACATTCAACTAGGCTTTTCTTTTTTTTCTTTCTAAAT
GATAGTTTGATGGGATAAATTTCAAAAGTAGATATGAATTTTGGTTCAATACAATATTATATATG
AATTTTGATTTTATGTAATTTTATATATAAAATATTGTTTTACTTTAATTTTCACAAGTTACTAA
CTCAATTATCGATATAGCACTATTTTAACTATACATATTACAACACGAATAATTATATATATCTA
ATATAAAAATAAATTGATGTATTTATTCTTTTAAATGTGTACAGTTAAATCAAAATTAAAGTTTC
ATTATACATTTGAACCATGATCAAAGTTCTATGTATATAATTGCACCAAATCAAAGTACATAAAT
CTACATTGCATATTGGATCAAAGTTCATATATAGTTTTGAGATTTATCTCATAGTTTGATTGTGG
AATTCATCCATTTCGATGAGATTGGTCCTTCAACAATTCACCTAGTATAGCTTTCTTTTTCCTCT
TTTATTTTTTGTTATACATAAATATATTGATCATAGCAGGGATTTTACCAAAAACCTTTTATATA
CACATTTTTGGATTAGAACAAATGGGGTTCTTTCTCTCTTCCACTCTCATATCTATCCATCCATC
ATACACATCATTAGGCTTTTTTTCC
Found at i:106374054 original size:26 final size:26
Alignment explanation
Indices: 106374020--106374079 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
106374010 TTTTAGTTCA
106374020 ATTCGATTTGAATTCCATCTCATTCG
1 ATTCGATTTGAATTCCATCTCATTCG
* * *
106374046 ATTCTATTTGAGTTCCATCTCATTTG
1 ATTCGATTTGAATTCCATCTCATTCG
*
106374072 ACTCGATT
1 ATTCGATT
106374080 CGAGAAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.45
Consensus pattern (26 bp):
ATTCGATTTGAATTCCATCTCATTCG
Found at i:106378148 original size:40 final size:40
Alignment explanation
Indices: 106378104--106378288 Score: 282
Period size: 40 Copynumber: 4.7 Consensus size: 40
106378094 GCCACTAGCT
* * *
106378104 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
106378144 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *
106378183 CAAATGCCTTCGGGACTTAGCCCAGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
106378223 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
106378263 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
106378289 ATTAGCCACT
Statistics
Matches: 135, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
39 36 0.27
40 99 0.73
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:106378202 original size:79 final size:80
Alignment explanation
Indices: 106378104--106378288 Score: 282
Period size: 79 Copynumber: 2.3 Consensus size: 80
106378094 GCCACTAGCT
* * * *
106378104 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
106378169 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
106378183 CAAATGCCTTCGGGACTTAGCCCAGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
106378248 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
106378263 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
106378289 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.62
80 36 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:106378309 original size:40 final size:39
Alignment explanation
Indices: 106378081--106378288 Score: 251
Period size: 40 Copynumber: 5.3 Consensus size: 39
106378071 CCTTCGGAGT
* * *
106378081 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-AACTCGCACAAATGCCTTCGGGAC
* *
106378120 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-AACTCGCACAAATGCCTTCGGGAC
*
106378160 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGAACTCGCACAAATGCCTTCGGGAC
* *
106378199 TTAGCCCAGATATA-ATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGA-A-CTCGCACAAATGCCTTCGGGAC
* *
106378239 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-AACTCGCACAAATGCCTTCGGGAC
106378279 TTAGCCCGGA
1 TTAGCCCGGA
106378289 ATTAGCCACT
Statistics
Matches: 149, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 40 0.27
40 107 0.72
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATATAGAACTCGCACAAATGCCTTCGGGAC
Found at i:106380027 original size:40 final size:40
Alignment explanation
Indices: 106379968--106380175 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
106379958 CAATTGAATG
* * * *
106379968 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
106380008 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
106380048 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
106380088 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * **
106380128 CTATTCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
106380168 ATATCCGG
1 ATATCCGG
106380176 TTGTTTCCGA
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:106380106 original size:80 final size:80
Alignment explanation
Indices: 106379969--106380175 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
106379959 AATTGAATGA
* * ** * * *
106379969 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
106380034 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
106380047 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
106380112 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
106380129 TATTCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
106380176 TTGTTTCCGA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:106385516 original size:40 final size:39
Alignment explanation
Indices: 106385471--106385678 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
106385461 CGGAATACAA
*
106385471 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
106385511 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
106385551 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
106385591 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
106385631 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
106385671 CCGGATAT
1 CCGGATAT
106385679 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:106385611 original size:80 final size:81
Alignment explanation
Indices: 106385471--106385676 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
106385461 CGGAATACAA
* * *
106385471 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
106385535 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
106385551 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
106385614 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
106385631 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
106385677 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:106391300 original size:40 final size:39
Alignment explanation
Indices: 106391256--106391526 Score: 353
Period size: 39 Copynumber: 6.9 Consensus size: 39
106391246 GTTCAAAACA
* * ** * *
106391256 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
106391296 CCTTCGGGACTTAACTCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
106391336 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
106391375 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
106391414 CCTTCTGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
106391453 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
106391492 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
106391527 TACATTCACA
Statistics
Matches: 213, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 174 0.82
40 39 0.18
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:106391367 original size:39 final size:39
Alignment explanation
Indices: 106391286--106391526 Score: 401
Period size: 39 Copynumber: 6.2 Consensus size: 39
106391276 TATGGTAACC
* * * *
106391286 CGCACAAATGCCTTCGGGACTTAACTCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* **
106391326 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
106391365 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
106391404 CGCACAATTGCCTTCTGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
106391443 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
106391482 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
106391521 CGCACA
1 CGCACA
106391527 TACATTCACA
Statistics
Matches: 191, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 174 0.91
40 17 0.09
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:106393457 original size:40 final size:39
Alignment explanation
Indices: 106393292--106393475 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
106393282 AAATTGAATG
* * *
106393292 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
106393332 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
106393372 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
106393412 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
106393451 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
106393476 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:106393500 original size:80 final size:81
Alignment explanation
Indices: 106393332--106393520 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
106393322 GCTGGAAATT
* * * *
106393332 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
106393397 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
106393413 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
106393476 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
106393492 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
106393521 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:106400258 original size:40 final size:39
Alignment explanation
Indices: 106400213--106400420 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
106400203 CGGAATACAA
*
106400213 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
106400253 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
106400293 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
106400333 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
106400373 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
106400413 CCGGATAT
1 CCGGATAT
106400421 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:106400353 original size:80 final size:81
Alignment explanation
Indices: 106400213--106400418 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
106400203 CGGAATACAA
* * *
106400213 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
106400277 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
106400293 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
106400356 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
106400373 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
106400419 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:106404507 original size:93 final size:93
Alignment explanation
Indices: 106404400--106404570 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
106404390 GCCCCTAAGT
* *
106404400 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106404465 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
106404493 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106404558 CGAGTTCGGATGC
66 CGAGTTCGGATGC
106404571 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:106404567 original size:46 final size:46
Alignment explanation
Indices: 106404395--106404567 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
106404385 AACCCGCCCC
* * *
106404395 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
106404441 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
106404489 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
106404534 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
106404568 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:106410400 original size:40 final size:39
Alignment explanation
Indices: 106410356--106410580 Score: 263
Period size: 40 Copynumber: 5.7 Consensus size: 39
106410346 GCCACTAGCT
*
106410356 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
106410396 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
106410435 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
106410475 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
** * * ** * *
106410515 CGTATGCCTTCGAGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
106410555 CAAATG-CTCTCGGGACTTAGTCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
106410581 TATCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 40 0.25
40 122 0.75
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:106410476 original size:79 final size:80
Alignment explanation
Indices: 106410356--106410540 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 80
106410346 GCCACTAGCT
* * * *
106410356 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
106410421 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
106410435 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
106410500 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
** *
106410515 CGTATGCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
106410541 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 60 0.63
80 35 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:106410568 original size:80 final size:78
Alignment explanation
Indices: 106410356--106410580 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 78
106410346 GCCACTAGCT
* *
106410356 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAG--ACTAGCACAAATGCCTTCGGGACTTAGCCCG
106410420 GTATAATAACTCGCA
64 GTATAATAACTCGCA
* *
106410435 CAAATGCCTTCGGGACTTAGCCCGGATATAATAG-CTCGCACAAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGA-AT-ATAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
* *
106410499 GATATAGTAGCTCGCA
64 G-TATAATAACTCGCA
** * * *
106410515 CGTATGCCTTCGAGACTTAGCCCGGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAG--ACTAGCACAAATGCCT-TCGGGACTTAGCCC
106410578 GGT
63 GGT
106410581 TATCATCCGA
Statistics
Matches: 126, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
77 3 0.02
79 59 0.47
80 59 0.47
81 1 0.01
82 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:106425948 original size:40 final size:39
Alignment explanation
Indices: 106425903--106426069 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
106425893 CGGAATACAA
106425903 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
106425943 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* ** *
106425983 CC-GATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
106426022 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACGAATGCCTTCGGGTCTTAGC
*
106426062 CCAGATAT
1 CCGGATAT
106426070 CATTCAATTG
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
38 3 0.03
39 29 0.27
40 73 0.68
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:106430151 original size:181 final size:180
Alignment explanation
Indices: 106429863--106430201 Score: 509
Period size: 181 Copynumber: 1.9 Consensus size: 180
106429853 TAAGATCTGT
* *
106429863 TAATTTTATCTAAAACTAGACTCATATATATTCTTACCATAAAATTTTAAGAATTTTTGATCTAG
1 TAATTTTATCCAAAACTAGACTCACATATATTCTTACCATAAAATTTTAAGAATTTTTGATCTAG
* * * **
106429928 CCAATAAGTACAATTTATTCATTAAATGTACCCCTGTTTCACTATT-TGATTGTTCCAACCTCTC
66 CCAATAAGTACAATTTATTCATTAAATATACCCCTATTTCACT-TTCCGACAGTTCCAACCTCTC
106429992 TTCACTAAAAATTATTTATCTCATGGTACCGGACTCCAAATTGAGAAGCGC
130 TTCACTAAAAATTATTTATCTCATGGTACCGGACTCCAAATTGAGAAGCGC
* * * *
106430043 TAATTTTATCCAGAAACTAGACTCACATATATTCTTACCATAAAATTTTCATAATTTTTGGTTTA
1 TAATTTTATCCA-AAACTAGACTCACATATATTCTTACCATAAAATTTTAAGAATTTTTGATCTA
* * * **
106430108 GTCAATTAGTACAGTTTATTCATTAAATATACCCCTATTTCACTTTCCGACAGTTCTGACCTCTC
65 GCCAATAAGTACAATTTATTCATTAAATATACCCCTATTTCACTTTCCGACAGTTCCAACCTCTC
106430173 TTCACTAAAAATTATTTATCTCATGGTAC
130 TTCACTAAAAATTATTTATCTCATGGTAC
106430202 AGCTCTCGGA
Statistics
Matches: 141, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
180 13 0.09
181 128 0.91
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (180 bp):
TAATTTTATCCAAAACTAGACTCACATATATTCTTACCATAAAATTTTAAGAATTTTTGATCTAG
CCAATAAGTACAATTTATTCATTAAATATACCCCTATTTCACTTTCCGACAGTTCCAACCTCTCT
TCACTAAAAATTATTTATCTCATGGTACCGGACTCCAAATTGAGAAGCGC
Found at i:106430819 original size:50 final size:50
Alignment explanation
Indices: 106430744--106431233 Score: 401
Period size: 50 Copynumber: 9.7 Consensus size: 50
106430734 ACCGAAGCTC
* * *
106430744 TCTGGTACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * *
106430794 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * * * ** *
106430844 TCTAATACACGTAATAGCCTCCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * *
106430896 T-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * * *
106430945 TCTGCTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * ** *
106430995 TCTGATACACGTAGTAGCTTGCACTTAGTACTACACAAGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * * * *
106431047 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACATATTCGACCTCTCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * ** *
106431096 TCTGCTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * * * *
106431148 -CGGGAACGCATAGTAGCTTGCATTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* **
106431197 TCTGGTACACGTAATAGCCTGCACTTAACACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
106431234 CGTGACTCAC
Statistics
Matches: 335, Mismatches: 96, Indels: 18
0.75 0.21 0.04
Matches are distributed among these distances:
49 10 0.03
50 220 0.66
51 99 0.30
52 6 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:106431020 original size:151 final size:151
Alignment explanation
Indices: 106430747--106431137 Score: 665
Period size: 151 Copynumber: 2.6 Consensus size: 151
106430737 GAAGCTCTCT
* *
106430747 GGTACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
106430812 CTGCACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
* *
106430877 CACACGTGATCGAAGTTAATG
131 CACAAGTGATCGAAGTTAACG
106430898 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* * * * *
106430963 CTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
106431028 CACAAGTGATCGAAGTTAACG
131 CACAAGTGATCGAAGTTAACG
* * *
106431049 GGTACGCATAGTAGCCTGCACTTAGTACTACATATTCGACCTCTCAATCTGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
*
106431114 CTGCACTTAGTACTAAACACGTGA
66 CTGCACTTAGTACTACACACGTGA
106431138 TCGAAGTTAA
Statistics
Matches: 226, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 226 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
CACAAGTGATCGAAGTTAACG
Found at i:106431061 original size:101 final size:100
Alignment explanation
Indices: 106430750--106431238 Score: 405
Period size: 101 Copynumber: 4.8 Consensus size: 100
106430740 GCTCTCTGGT
* * *
106430750 ACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACA-GTGACCTATCAATCTGATACACGTAGTAGCCTG
* ** * **
106430815 CACTTAGTACTACACACGTGA-CTTAA-CCATC-TAA
65 CACTTAGTACTACACACGTGATC-GAAGTTAACGGGA
* * * * ** * * * * *
106430849 TACACGTAATAGCCTCCACTTAGTACTACACACGTGATCGAAGTTAAT-GGGTACGCATAGTAGC
1 -ACGCATAGTAGCCTGCACTTAGTACTACACA-GTGA-CCTA-TCAATCTGATACACGTAGTAGC
* * ** * * **
106430913 CTGCACTTAGTACTACACATGCGA-CCTA-TCAATCTGCT
62 CTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGA
* * * * * * *
106430951 ACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACA-GTGACCTATCAATCTGATACACGTAGTAGCCTG
* *
106431016 CACTTAGTACTACACAAGTGATCGAAGTTAACGGGT
65 CACTTAGTACTACACACGTGATCGAAGTTAACGGGA
* * * *
106431052 ACGCATAGTAGCCTGCACTTAGTACTACATATTCGACCTCTCAATCTGCTACACGTAGTAGCCTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACAGT-GACCTATCAATCTGATACACGTAGTAGCCTG
*
106431117 CACTTAGTACTAAACACGTGATCGAAGTTAACGGGA
65 CACTTAGTACTACACACGTGATCGAAGTTAACGGGA
* * * * *
106431153 ACGCATAGTAGCTTGCATTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAATAGCCTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACA-GTGACCTATCAATCTGATACACGTAGTAGCCTG
**
106431218 CACTTAACACTACACACGTGA
65 CACTTAGTACTACACACGTGA
106431239 CTCACAACGA
Statistics
Matches: 313, Mismatches: 67, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
99 2 0.01
100 68 0.22
101 236 0.75
102 7 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
ACGCATAGTAGCCTGCACTTAGTACTACACAGTGACCTATCAATCTGATACACGTAGTAGCCTGC
ACTTAGTACTACACACGTGATCGAAGTTAACGGGA
Found at i:106431215 original size:151 final size:151
Alignment explanation
Indices: 106430747--106431233 Score: 514
Period size: 151 Copynumber: 3.2 Consensus size: 151
106430737 GAAGCTCTCT
* * * *
106430747 GGTACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* * * ** * * * *
106430812 CTGCACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
66 CTGCACTTAGTACTAAACACGTGACTGAACCAACGGATACACATAGTAGCTTGCACTTAGTACTA
* * * * *
106430877 CACACGTGATCGAAGTTAATG
131 CACAAGCGATCCAAGTCAACG
* *
106430898 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
1 GGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* * * * * *
106430963 CTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTTGCACTTAGTACTA
66 CTGCACTTAGTACTAAACACGTGACTGAACCAACGGATACACATAGTAGCTTGCACTTAGTACTA
* * *
106431028 CACAAGTGATCGAAGTTAACG
131 CACAAGCGATCCAAGTCAACG
* * * * *
106431049 GGTACGCATAGTAGCCTGCACTTAGTACTACATATTCGACCTCTCAATCTGCTACACGTAGTAGC
1 GGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
** * *
106431114 CTGCACTTAGTACTAAACACGTGA-TCGAAGTTAACGGGA-ACGCATAGTAGCTTGCATTTAGTA
66 CTGCACTTAGTACTAAACACGTGACT-GAA-CCAAC-GGATACACATAGTAGCTTGCACTTAGTA
* * *
106431177 CTACACATGCGA-CCTA-TCAATCT
128 CTACACAAGCGATCCAAGTCAA-CG
* **
106431200 GGTACACGTAATAGCCTGCACTTAACACTACACA
1 GGTACACATAATAGCCTGCACTTAGTACTACACA
106431234 CGTGACTCAC
Statistics
Matches: 298, Mismatches: 34, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
150 4 0.01
151 259 0.87
152 33 0.11
153 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
CTGCACTTAGTACTAAACACGTGACTGAACCAACGGATACACATAGTAGCTTGCACTTAGTACTA
CACAAGCGATCCAAGTCAACG
Found at i:106434209 original size:15 final size:14
Alignment explanation
Indices: 106434184--106434243 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
106434174 TATAGATAAC
*
106434184 AAGAAAACCAAGATT
1 AAGAAATCCAAGA-T
*
106434199 AAGAAGTCCAAGAT
1 AAGAAATCCAAGAT
*
106434213 AGATAAATCCAAGAT
1 A-AGAAATCCAAGAT
106434228 AAGGAAATCCAAGAT
1 AA-GAAATCCAAGAT
106434243 A
1 A
106434244 CAATATCTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 3 0.08
15 35 0.92
ACGTcount: A:0.55, C:0.13, G:0.17, T:0.15
Consensus pattern (14 bp):
AAGAAATCCAAGAT
Found at i:106448095 original size:50 final size:50
Alignment explanation
Indices: 106448020--106448402 Score: 356
Period size: 50 Copynumber: 7.6 Consensus size: 50
106448010 CTAGTATGCA
*
106448020 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* ** * * * * * *
106448070 TAGTAGCCAGCACTTAGTACTACACACATGTCTTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* *
106448120 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * *
106448170 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * ** *
106448220 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA-TCAATCTGGTACACG
* ** * *
106448270 TAGTAGCCTGCACTTAGTGCTACACATACGACCTCTCAATCTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * * ** * * * *
106448320 TAGTAGCCTGCACCTAGTACCACATACGGGATCGAAGTTAAT-GGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
*
106448371 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
106448403 TCACAATGGA
Statistics
Matches: 262, Mismatches: 67, Indels: 8
0.78 0.20 0.02
Matches are distributed among these distances:
49 3 0.01
50 219 0.84
51 36 0.14
52 4 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:106448274 original size:100 final size:100
Alignment explanation
Indices: 106448020--106448403 Score: 421
Period size: 100 Copynumber: 3.8 Consensus size: 100
106448010 CTAGTATGCA
* ** * *
106448020 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATTTGGTACACGTAGTAGCCAGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATCAATCGGGTACACATAGTAGCCTGCACTT
* *
106448085 AGTACTACACACATGTCTTAACCATCTGATACATG
66 AGTACTACACACATGACTTAACCATCTGATACACG
* * * *
106448120 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACTTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATCAATCGGGTACACATAGTAGCCTGCACTT
*
106448185 AGTACTACACACGTGACTTAACCATCTGATACACG
66 AGTACTACACACATGACTTAACCATCTGATACACG
* * **
106448220 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAGTTAA-CGGGTATGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAA-TCAATCGGGTACACATAGTAGCCTGCACT
* * * * ** * * *
106448284 TAGTGCTACACATACGACCTCTCAATCTGGTACACA
65 TAGTACTACACACATGACTTAACCATCTGATACACG
* * * * * * * *
106448320 TAGTAGCCTGCACCTAGTACCACATACGGGATCGAAGTTAAT-GGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TCAATCGGGTACACATAGTAGCCTGCAC
*
106448384 TTAGTACTACACACGTGACT
64 TTAGTACTACACACATGACT
106448404 CACAATGGAT
Statistics
Matches: 243, Mismatches: 38, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
100 197 0.81
101 46 0.19
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATCAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACACATGACTTAACCATCTGATACACG
Found at i:106448293 original size:150 final size:149
Alignment explanation
Indices: 106448018--106448339 Score: 416
Period size: 150 Copynumber: 2.1 Consensus size: 149
106448008 CTCTAGTATG
* * * *
106448018 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATTTGGTACACGTAGTAGCCAGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCAGCAC
* *
106448083 TTAGTACTACACACATGTCTTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACTACACATG
66 TTAGTACTACACACATGTCTTAACCAGCTGATACA-GTAGTAGCCTGCACTTAGTACTACACATA
106448148 CGACCTATCAATCTGGTACA
130 CGACCTATCAATCTGGTACA
* * * *
106448168 CTTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCAGCAC
** * * * *
106448233 TTAGTACTACACATGTGATCAAGTTAA-CGGGT-ATGCA-TAGTAGCCTGCACTTAGTGCTACAC
66 TTAGTACTACACACATG-TC---TTAACCAGCTGATACAGTAGTAGCCTGCACTTAGTACTACAC
*
106448295 ATACGACCTCTCAATCTGGTACA
127 ATACGACCTATCAATCTGGTACA
*
106448318 CATAGTAGCCTGCACCTAGTAC
1 CATAGTAGCCTGCACTTAGTAC
106448340 CACATACGGG
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
150 137 0.92
151 2 0.01
152 4 0.03
153 2 0.01
154 4 0.03
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (149 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACACGTAGTAGCCAGCAC
TTAGTACTACACACATGTCTTAACCAGCTGATACAGTAGTAGCCTGCACTTAGTACTACACATAC
GACCTATCAATCTGGTACA
Found at i:106452193 original size:18 final size:18
Alignment explanation
Indices: 106452159--106452193 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
106452149 GCTAACAAAT
106452159 CATCATCAAATTTTTGAG
1 CATCATCAAATTTTTGAG
106452177 CATCA-CAAATTTGTTGA
1 CATCATCAAATTT-TTGA
106452194 ACAAATATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (18 bp):
CATCATCAAATTTTTGAG
Found at i:106458698 original size:2 final size:2
Alignment explanation
Indices: 106458691--106458721 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
106458681 TGTTTGATTC
*
106458691 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106458722 GTTCTTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:106459069 original size:42 final size:41
Alignment explanation
Indices: 106458958--106459122 Score: 156
Period size: 42 Copynumber: 3.9 Consensus size: 41
106458948 AAATGTGATT
* * *
106458958 TCGGGCCTCGGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGCCTAGCAGGCTATAATGCTGGTGAAT-A-A-TA
*
106459001 TCGGGCTTCGGACCTAGCAGGTTATAATGCTGGTGAGATAATA
1 TCGGGCTTCGG-CCTAGCAGGCTATAATGCTGGTGA-ATAATA
** *
106459044 TCGGGCTTCGGCCTAGCAGGCTATAATGCCAGTGAAATGATA
1 TCGGGCTTCGGCCTAGCAGGCTATAATGCTGGTG-AATAATA
* *
106459086 TCGGGCTTCAAGCCTAGCAGG-TGA-AATGCCGGTGAAT
1 TCGGGCTTC-GGCCTAGCAGGCT-ATAATGCTGGTGAAT
106459123 GAGTTCAGAC
Statistics
Matches: 106, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
41 3 0.03
42 44 0.42
43 35 0.33
44 13 0.12
45 9 0.08
46 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (41 bp):
TCGGGCTTCGGCCTAGCAGGCTATAATGCTGGTGAATAATA
Found at i:106472834 original size:42 final size:43
Alignment explanation
Indices: 106472720--106472871 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
106472710 CTAGGGTTCT
* * *
106472720 GATATGTGATATCGTGTAAGACCAC-GTCTGGGATGTTGGCATC
1 GATATATGATTTCGTGTAAGACC-CTGTCTGGGATATTGGCATC
* * * *
106472763 GATTTGTGATTTACGTGTAAGACCATGTCTAGGATATTGGCATC
1 GATATATGATTT-CGTGTAAGACCCTGTCTGGGATATTGGCATC
* * *
106472807 G-TATATGATTTCGTGTAAGACCCTGTCTGGGACAATGGCTTC
1 GATATATGATTTCGTGTAAGACCCTGTCTGGGATATTGGCATC
* * *
106472849 GATATTTGATTACATGTAAGACC
1 GATATATGATTTCGTGTAAGACC
106472872 ACATCTGGAA
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
42 27 0.30
43 36 0.40
44 28 0.31
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
GATATATGATTTCGTGTAAGACCCTGTCTGGGATATTGGCATC
Found at i:106476098 original size:27 final size:25
Alignment explanation
Indices: 106476032--106476149 Score: 92
Period size: 27 Copynumber: 4.5 Consensus size: 25
106476022 CGCATAATAG
* * *
106476032 AATGAAAGCCCTTGTGGAAATCTATGA
1 AATGGAAGCCTTTGTGGCAAT-T-TGA
* *
106476059 AATGGATGTCTTTGTGGCAATCTATGA
1 AATGGAAGCCTTTGTGGCAAT-T-TGA
* * **
106476086 AATTGAAGCCTTTTTGGTGTATTTGA
1 AATGGAAGCCTTTGTGG-CAATTTGA
*
106476112 AAAGGAAGCCTTTGTGGCATATTTGA
1 AATGGAAGCCTTTGTGGCA-ATTTGA
106476138 AATGGAAGCCTT
1 AATGGAAGCCTT
106476150 CATGGAAACT
Statistics
Matches: 72, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
26 34 0.47
27 36 0.50
28 2 0.03
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (25 bp):
AATGGAAGCCTTTGTGGCAATTTGA
Found at i:106476119 original size:26 final size:26
Alignment explanation
Indices: 106476068--106476149 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 26
106476058 AAATGGATGT
**
106476068 CTTTGTGGCA-ATCTATGAAATTGAAGC
1 CTTTGTGGCATAT-T-TGAAAAGGAAGC
* **
106476095 CTTTTTGGTGTATTTGAAAAGGAAGC
1 CTTTGTGGCATATTTGAAAAGGAAGC
*
106476121 CTTTGTGGCATATTTGAAATGGAAGC
1 CTTTGTGGCATATTTGAAAAGGAAGC
106476147 CTT
1 CTT
106476150 CATGGAAACT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 35 0.78
27 8 0.18
28 2 0.04
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (26 bp):
CTTTGTGGCATATTTGAAAAGGAAGC
Found at i:106476829 original size:30 final size:30
Alignment explanation
Indices: 106476795--106476856 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
106476785 GAAAATGAAC
106476795 ATGAGTATAAGAATCACAATAGATGAAGCA
1 ATGAGTATAAGAATCACAATAGATGAAGCA
*
106476825 ATGAGTATAAGAATCACAATAGGTGAAGCA
1 ATGAGTATAAGAATCACAATAGATGAAGCA
106476855 AT
1 AT
106476857 CATTTAAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (30 bp):
ATGAGTATAAGAATCACAATAGATGAAGCA
Found at i:106479139 original size:43 final size:43
Alignment explanation
Indices: 106479086--106479171 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
106479076 TCATATTTCA
* *
106479086 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTTAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
* * *
106479129 TTTCTCATCTCATACTCATTTCTCTTCTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
106479172 CAATCATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.22, C:0.24, G:0.01, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:106479870 original size:19 final size:19
Alignment explanation
Indices: 106479829--106479871 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
106479819 AATATTATAC
* *
106479829 ATTTCAATTTTAACATTAA
1 ATTTTAATTTTAACACTAA
* *
106479848 ATTTTAATTTTCACACTAT
1 ATTTTAATTTTAACACTAA
106479867 ATTTT
1 ATTTT
106479872 GCTTATTCTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTTAATTTTAACACTAA
Found at i:106482928 original size:43 final size:43
Alignment explanation
Indices: 106482860--106483049 Score: 195
Period size: 43 Copynumber: 4.4 Consensus size: 43
106482850 TGGCATACGA
* * * *
106482860 AGTGCATCATCGAATATACCAAAACAACTATACTGGTACAAAT
1 AGTGCATCATCGGATATAACAAAACAACTATACTGGCACACAT
* * *
106482903 AGTGCATCATGGGATATATCGAAACAACTATACTGGCACACAT
1 AGTGCATCATCGGATATAACAAAACAACTATACTGGCACACAT
* * *
106482946 AGTGTATCATCGGATA-AACTAAAGCAACTATACTGGCACACAC
1 AGTGCATCATCGGATATAAC-AAAACAACTATACTGGCACACAT
* ** * ** *
106482989 AGTGCATCATCGGATA-AACTGAAGTAATTATACAAGCACACAC
1 AGTGCATCATCGGATATAAC-AAAACAACTATACTGGCACACAT
106483032 AGTGCATCATCGGATATA
1 AGTGCATCATCGGATATA
106483050 CCGAAGAATT
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 2 0.02
43 124 0.98
44 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (43 bp):
AGTGCATCATCGGATATAACAAAACAACTATACTGGCACACAT
Found at i:106483021 original size:86 final size:86
Alignment explanation
Indices: 106482860--106483047 Score: 216
Period size: 86 Copynumber: 2.2 Consensus size: 86
106482850 TGGCATACGA
* * * * * *
106482860 AGTGCATCATCGAATATACCAAAACAACTATACTGGTACAAATAGTGCATCATGGGATATATCGA
1 AGTGCATCATCGGATAAACCAAAACAACTATACTGGCACAAACAGTGCATCATCGGATAAATCGA
** *
106482925 AACAACTATACTGGCACACAT
66 AACAACTATACAAGCACACAC
* * * *
106482946 AGTGTATCATCGGATAAACTAAAGCAACTATACTGGCACACACAGTGCATCATCGGATAAA-CTG
1 AGTGCATCATCGGATAAACCAAAACAACTATACTGGCACAAACAGTGCATCATCGGATAAATC-G
** *
106483010 AAGTAATTATACAAGCACACAC
65 AAACAACTATACAAGCACACAC
106483032 AGTGCATCATCGGATA
1 AGTGCATCATCGGATA
106483048 TACCGAAGAA
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
85 1 0.01
86 83 0.99
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.22
Consensus pattern (86 bp):
AGTGCATCATCGGATAAACCAAAACAACTATACTGGCACAAACAGTGCATCATCGGATAAATCGA
AACAACTATACAAGCACACAC
Found at i:106493420 original size:32 final size:31
Alignment explanation
Indices: 106493384--106493451 Score: 113
Period size: 29 Copynumber: 2.2 Consensus size: 31
106493374 CCTTTGCTTC
106493384 TTCAAATGATTATTTATTGTTGTTGGTTGCTA
1 TTCAAAT-ATTATTTATTGTTGTTGGTTGCTA
106493416 TTC-AA-ATTATTTATTGTTGTTGGTTGCTA
1 TTCAAATATTATTTATTGTTGTTGGTTGCTA
106493445 TTCAAAT
1 TTCAAAT
106493452 TGAATGCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
29 27 0.79
30 2 0.06
31 2 0.06
32 3 0.09
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (31 bp):
TTCAAATATTATTTATTGTTGTTGGTTGCTA
Found at i:106493429 original size:29 final size:29
Alignment explanation
Indices: 106493392--106493452 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
106493382 TCTTCAAATG
106493392 ATTATTTATTGTTGTTGGTTGCTATTCAA
1 ATTATTTATTGTTGTTGGTTGCTATTCAA
106493421 ATTATTTATTGTTGTTGGTTGCTATTCAA
1 ATTATTTATTGTTGTTGGTTGCTATTCAA
106493450 ATT
1 ATT
106493453 GAATGCTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.21, C:0.07, G:0.16, T:0.56
Consensus pattern (29 bp):
ATTATTTATTGTTGTTGGTTGCTATTCAA
Found at i:106497244 original size:29 final size:29
Alignment explanation
Indices: 106497211--106497284 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
106497201 CCTTCGAGCT
106497211 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
106497240 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
106497269 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
106497285 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:106497245 original size:58 final size:58
Alignment explanation
Indices: 106497152--106497284 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
106497142 ATACTCGATT
* * * * *
106497152 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
106497210 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
106497268 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
106497285 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:106505107 original size:29 final size:29
Alignment explanation
Indices: 106505074--106505147 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
106505064 CCTTCGAGCT
106505074 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
106505103 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
106505132 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
106505148 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:106505108 original size:58 final size:58
Alignment explanation
Indices: 106505015--106505147 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
106505005 ATACTCGATT
* * * * *
106505015 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
106505073 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
106505131 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
106505148 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:106513967 original size:39 final size:39
Alignment explanation
Indices: 106513913--106514071 Score: 248
Period size: 39 Copynumber: 4.1 Consensus size: 39
106513903 GTATGAATGT
106513913 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
106513952 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
106513991 CGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* *
106514030 C-AAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAA-TTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTG
106514070 CG
1 CG
106514072 GGTTACCATA
Statistics
Matches: 109, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 92 0.84
40 16 0.15
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
Found at i:106514087 original size:40 final size:39
Alignment explanation
Indices: 106513920--106514101 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
106513910 TGTCGAATTG
* *
106513920 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
106513959 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
106513998 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
106514037 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
106514077 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
106514102 TGTTTGAACG
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 87 0.69
40 39 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:106521288 original size:40 final size:40
Alignment explanation
Indices: 106521070--106521266 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
106521060 TCGAATGATG
* *
106521070 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
106521110 TCCGGACTAAGATCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
106521149 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
106521189 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
106521229 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
106521267 TAACCGGGCT
Statistics
Matches: 147, Mismatches: 5, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
39 33 0.22
40 110 0.75
41 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:106521294 original size:40 final size:40
Alignment explanation
Indices: 106521070--106521294 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
106521060 TCGAATGATG
*
106521070 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
106521110 TCCGGACTAAGAT-CCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
106521149 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
106521189 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
106521229 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
106521270 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
106521295 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
39 33 0.19
40 134 0.79
41 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:106521308 original size:40 final size:40
Alignment explanation
Indices: 106521162--106521313 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
106521152 GGACTAAGAT
** *
106521162 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
106521202 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
106521242 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
106521282 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
106521314 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:106529268 original size:28 final size:28
Alignment explanation
Indices: 106529233--106529308 Score: 125
Period size: 28 Copynumber: 2.7 Consensus size: 28
106529223 TGAGAAAGAG
*
106529233 TATGTTAAGTCACGAGTTGGTACAGGTA
1 TATGTTAAGTCACGAGTTGGTAAAGGTA
106529261 TATGTTAAGTCACGAGTTGGTAAAGGTA
1 TATGTTAAGTCACGAGTTGGTAAAGGTA
* *
106529289 TATGTGAAGTCATGAGTTGG
1 TATGTTAAGTCACGAGTTGG
106529309 AACATGTACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TATGTTAAGTCACGAGTTGGTAAAGGTA
Found at i:106529831 original size:24 final size:22
Alignment explanation
Indices: 106529804--106529851 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
106529794 ATGCATTTGA
106529804 GATGTGGTT-TGTGATTGTGTATAT
1 GATG-GGTTATGTGATTG-GT-TAT
*
106529828 GATGGGTTATGTTATTGGTTAT
1 GATGGGTTATGTGATTGGTTAT
106529850 GA
1 GA
106529852 ATGCTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 11 0.50
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (22 bp):
GATGGGTTATGTGATTGGTTAT
Found at i:106532448 original size:24 final size:24
Alignment explanation
Indices: 106532407--106532458 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
106532397 CCTTCATACC
* **
106532407 CATATACACATGAACACATCCATA
1 CATATACACATAAACACAAACATA
106532431 CATATACACA-AAATCACAAACATA
1 CATATACACATAAA-CACAAACATA
106532455 CATA
1 CATA
106532459 CCTTCCACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.52, C:0.27, G:0.02, T:0.19
Consensus pattern (24 bp):
CATATACACATAAACACAAACATA
Found at i:106535986 original size:19 final size:19
Alignment explanation
Indices: 106535962--106536004 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
106535952 GTAGGTTGGT
* *
106535962 CATGTGGGTTTCACATGCC
1 CATGTGGCTTGCACATGCC
*
106535981 CATGTGGCTTGGACATGCC
1 CATGTGGCTTGCACATGCC
106536000 CATGT
1 CATGT
106536005 CTTCAGCCCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (19 bp):
CATGTGGCTTGCACATGCC
Found at i:106537828 original size:48 final size:49
Alignment explanation
Indices: 106537656--106537891 Score: 168
Period size: 48 Copynumber: 4.9 Consensus size: 49
106537646 AGGTAGGATC
***
106537656 CCGATGCCAT-TCCCTAGACATGGTCTTACATTGGCTCATAC-T-TCAA-G
1 CCGATGCCATGTCCC-AGACATGGTCTTACACCAGCTC-TACATATCAATG
* * ** **
106537703 TCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATCTGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACCAGCTCT-ACATATCAATG
* * * * *
106537753 CTGATACCATGTCCTAGACATGGTCTTACACCAGCTCT-CGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTACATATCAATG
* ** **
106537801 CCGATGCCATGTCCCAGACATGTTCTTACACTGGCTCT-CATAT-TGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTACATATCAAT-G
* * *
106537849 CCGATG-CATGTCCTAGACAT-GTCTTACACTAGCAC-ACATATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTACATATCA
106537892 CCCAAATGTC
Statistics
Matches: 150, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
46 18 0.12
47 45 0.30
48 53 0.35
49 2 0.01
50 32 0.21
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACCAGCTCTACATATCAATG
Found at i:106537836 original size:98 final size:94
Alignment explanation
Indices: 106537704--106537877 Score: 260
Period size: 98 Copynumber: 1.8 Consensus size: 94
106537694 TACTTCAAGT
*
106537704 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACATATCTGT-GCTGATACCATGTCCT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT--CATAT-TGTGGCCGAT-CCATGTCCT
106537768 AGACATGGTCTTACACCAGCTCTCGTCTCAATGC
62 AGACAT-GTCTTACACCAGCTCTCGTCTCAATGC
* * *
106537802 CGATGCCATGTCCCAGACATGTTCTTACACTGGCTCTCATATTGTGGCCGATGCATGTCCTAGAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCGATCCATGTCCTAGAC
106537867 ATGTCTTACAC
66 ATGTCTTACAC
106537878 TAGCACACAT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
94 9 0.13
95 17 0.24
96 10 0.14
98 35 0.49
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCGATCCATGTCCTAGAC
ATGTCTTACACCAGCTCTCGTCTCAATGC
Found at i:106540439 original size:50 final size:48
Alignment explanation
Indices: 106540323--106540553 Score: 231
Period size: 50 Copynumber: 4.8 Consensus size: 48
106540313 CTAGGGAGAT
* * *
106540323 ATGAGAGCTAGTGTAAGACGATGTCTGGGACATGGCATCGGCTTGAT-
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGATG
* * * *
106540370 ATGTG-TC-AGTGTAAGACCATGTCTAGGACATGGCATCGACACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTGAT-G
* * *
106540418 ATGAGAGCTAGTGTAAGACCATGTTTGGTACATGGAATCGACCTTGAT-
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACC-TGATG
* *
106540466 ATACGAGAG-TCAGTGTAAGACCATGTCTGGGGCATGGCATCGACTTTGATG
1 AT--GAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTGATG
* *
106540517 -TGTGAGCTAGTGTAAGACCATGTCCGGGACATGGCAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
106540554 TGCCACCTTA
Statistics
Matches: 150, Mismatches: 22, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
45 30 0.20
46 4 0.03
47 4 0.03
48 37 0.25
49 4 0.03
50 71 0.47
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGATG
Found at i:106540500 original size:95 final size:92
Alignment explanation
Indices: 106540323--106540550 Score: 235
Period size: 95 Copynumber: 2.4 Consensus size: 92
106540313 CTAGGGAGAT
* * * *
106540323 ATGAGAGCTAGTGTAAGACGATGTCTGGGACATGGCATCGGCTTGATATGTGTCAGTGTAAGACC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCGCCTTGATATGAGTCAGTGTAAGACC
106540388 ATGTCTAGGACATGGCATCGACACCGATAG
66 ATGTCTAGG--A-GGCATCGACACCGATAG
* *
106540418 ATGAGAGCTAGTGTAAGACCATGTTTGGTACATGGAATCGACCTTGATATACGAGAGTCAGTGTA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCG-CCTTGATAT----GAGTCAGTGTA
* ***
106540483 AGACCATGTCTGGGGCATGGCATCGACTTTGAT-G
61 AGACCATGTCT-AGG-A-GGCATCGACACCGATAG
* *
106540517 -TGTGAGCTAGTGTAAGACCATGTCCGGGACATGG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
106540551 CATTGCCACC
Statistics
Matches: 113, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
95 36 0.32
96 8 0.07
98 30 0.27
99 1 0.01
100 36 0.32
101 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (92 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCGCCTTGATATGAGTCAGTGTAAGACC
ATGTCTAGGAGGCATCGACACCGATAG
Found at i:106540507 original size:100 final size:94
Alignment explanation
Indices: 106540323--106540550 Score: 278
Period size: 100 Copynumber: 2.4 Consensus size: 94
106540313 CTAGGGAGAT
* * * *
106540323 ATGAGAGCTAGTGTAAGACGATGTCTGGGACATGGCATCGGCTTGATATGTGTCAGTGTAAGACC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCGCCTTGATATGAGTCAGTGTAAGACC
106540388 ATGTCTAGGACATGGCATCGACACCGATAG
66 ATGTCTAGGACATGGCATCGACACCGAT-G
* *
106540418 ATGAGAGCTAGTGTAAGACCATGTTTGGTACATGGAATCGACCTTGATATACGAGAGTCAGTGTA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCG-CCTTGATAT----GAGTCAGTGTA
* * ***
106540483 AGACCATGTCTGGGGCATGGCATCGACTTTGATG
61 AGACCATGTCTAGGACATGGCATCGACACCGATG
* *
106540517 -TGTGAGCTAGTGTAAGACCATGTCCGGGACATGG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
106540551 CATTGCCACC
Statistics
Matches: 113, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
95 36 0.32
96 8 0.07
98 30 0.27
99 1 0.01
100 38 0.34
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (94 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCGCCTTGATATGAGTCAGTGTAAGACC
ATGTCTAGGACATGGCATCGACACCGATG
Found at i:106542737 original size:17 final size:18
Alignment explanation
Indices: 106542717--106542750 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
106542707 CGTTTGTTGA
106542717 TTTTTCTTATTT-ATTTG
1 TTTTTCTTATTTGATTTG
*
106542734 TTTTTGTTATTTGATTT
1 TTTTTCTTATTTGATTT
106542751 ATATTATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.76
Consensus pattern (18 bp):
TTTTTCTTATTTGATTTG
Found at i:106543704 original size:56 final size:56
Alignment explanation
Indices: 106543643--106543778 Score: 245
Period size: 56 Copynumber: 2.4 Consensus size: 56
106543633 ACCATGGCAT
* *
106543643 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCTATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTC
*
106543699 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTC
106543755 CGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
106543779 CTGTATGGGA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTC
Found at i:106543796 original size:56 final size:56
Alignment explanation
Indices: 106543643--106543807 Score: 208
Period size: 56 Copynumber: 2.9 Consensus size: 56
106543633 ACCATGGCAT
* * * * *
106543643 CGATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCTATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTATGAGACGTTGGCATCAATATGTGACTC
* * *
106543699 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTATGAGACGTTGGCATCAATATGTGACTC
* *
106543755 CGATATATGTGTGCGAGTAAGACC-CTGTATGGGACAG-TGGCATCGATATGTGA
1 CGATATATGTGTGCGAGTAAGACCAC-GTATGAGAC-GTTGGCATCAATATGTGA
106543808 TTACATGTAA
Statistics
Matches: 99, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
55 1 0.01
56 97 0.98
57 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTATGAGACGTTGGCATCAATATGTGACTC
Found at i:106546187 original size:26 final size:26
Alignment explanation
Indices: 106546158--106546212 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
106546148 AACACACCAA
*
106546158 TATCCCAGCAAGGCTGCCAGAAACAG
1 TATCCCAGCAAAGCTGCCAGAAACAG
** * *
106546184 TATCGTAGCAAAGCTGCCAGTATCAG
1 TATCCCAGCAAAGCTGCCAGAAACAG
106546210 TAT
1 TAT
106546213 TTGTGGCAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (26 bp):
TATCCCAGCAAAGCTGCCAGAAACAG
Found at i:106546230 original size:27 final size:27
Alignment explanation
Indices: 106546191--106546257 Score: 86
Period size: 24 Copynumber: 2.6 Consensus size: 27
106546181 CAGTATCGTA
** *
106546191 GCAAAGCTGCCAGTATCAGTATTTGTG
1 GCAAAGCCACCAGTATCAGTATATGTG
106546218 GCAAAGCCACCAG---CAGTATATGTG
1 GCAAAGCCACCAGTATCAGTATATGTG
106546242 GCAAAGCCACCAGTAT
1 GCAAAGCCACCAGTAT
106546258 AATACACTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 23 0.68
27 11 0.32
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (27 bp):
GCAAAGCCACCAGTATCAGTATATGTG
Found at i:106546234 original size:24 final size:24
Alignment explanation
Indices: 106546207--106546254 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
106546197 CTGCCAGTAT
*
106546207 CAGTATTTGTGGCAAAGCCACCAG
1 CAGTATATGTGGCAAAGCCACCAG
106546231 CAGTATATGTGGCAAAGCCACCAG
1 CAGTATATGTGGCAAAGCCACCAG
106546255 TATAATACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (24 bp):
CAGTATATGTGGCAAAGCCACCAG
Found at i:106549858 original size:40 final size:40
Alignment explanation
Indices: 106549802--106549950 Score: 142
Period size: 40 Copynumber: 3.7 Consensus size: 40
106549792 TCTTCGAATG
*
106549802 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT-C-ACAGTGACT
* * *
106549843 ATAT-CGGGCTAAGTCCCAAAGACATTTGTCACAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCACAGTGACT
* * * *
106549882 AAATCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT-CACAGTGACT
* * * *
106549922 CTAACCGGGCTATGTCTCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
106549951 AGCGAGCAGT
Statistics
Matches: 90, Mismatches: 15, Indels: 7
0.80 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 74 0.82
41 5 0.06
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTCACAGTGACT
Found at i:106557806 original size:41 final size:40
Alignment explanation
Indices: 106557749--106557898 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
106557739 TCTTCGAATG
* *
106557749 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACT
*
106557790 ATATCCGGGCTAAGTCCCGAAGACATTTGT-CACAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCA-AGTTACT
* * *
106557830 AAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
106557870 CTAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
106557899 AGCGAGCAGT
Statistics
Matches: 95, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 65 0.68
41 29 0.31
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:106568571 original size:28 final size:28
Alignment explanation
Indices: 106568502--106568602 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
106568492 GACAAGATTG
* * * *
106568502 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
106568532 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
106568560 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
106568589 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106568603 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:106575697 original size:28 final size:28
Alignment explanation
Indices: 106575628--106575728 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
106575618 GACAAGATTG
* * * *
106575628 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
106575658 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
106575686 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
106575715 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106575729 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:106578906 original size:36 final size:36
Alignment explanation
Indices: 106578864--106578937 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
106578854 TTTCTCTCCA
106578864 TTTCGGTAGCTGTTACCCTTTTGATTCCTTTCATTT
1 TTTCGGTAGCTGTTACCCTTTTGATTCCTTTCATTT
106578900 TTTCGGTAGCTGTTACCCTTTTGATTCCTTTCATTT
1 TTTCGGTAGCTGTTACCCTTTTGATTCCTTTCATTT
106578936 TT
1 TT
106578938 GTTGAGGCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.11, C:0.22, G:0.14, T:0.54
Consensus pattern (36 bp):
TTTCGGTAGCTGTTACCCTTTTGATTCCTTTCATTT
Found at i:106585838 original size:40 final size:41
Alignment explanation
Indices: 106585793--106585959 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
106585783 TCGGATATAA
*
106585793 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
106585833 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106585873 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106585913 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
106585952 CCGGATAT
1 CCGGATAT
106585960 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106586803 original size:17 final size:19
Alignment explanation
Indices: 106586780--106586825 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
106586770 AAGAAGCATG
106586780 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
106586798 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
106586816 AATCATGCTC
1 AATCATGCTC
106586826 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:106593827 original size:40 final size:40
Alignment explanation
Indices: 106593782--106593948 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
106593772 CGGAATATAA
106593782 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106593822 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106593862 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106593902 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106593941 CCGGATAT
1 CCGGATAT
106593949 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106594791 original size:17 final size:19
Alignment explanation
Indices: 106594768--106594813 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
106594758 AAGAAGCATG
106594768 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
106594786 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
106594804 AATCATGCTC
1 AATCATGCTC
106594814 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:106602219 original size:50 final size:49
Alignment explanation
Indices: 106602153--106602345 Score: 199
Period size: 50 Copynumber: 3.9 Consensus size: 49
106602143 AACCGAAGCT
* * * *
106602153 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACACATGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAAC
* * *
106602203 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTAA-AC
* * * * *
106602254 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAAT
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACTAAAC
* * *
106602303 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
106602346 TATTCACAAT
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.01
50 80 0.67
51 38 0.32
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTAAAC
Found at i:106602321 original size:101 final size:101
Alignment explanation
Indices: 106602159--106602345 Score: 286
Period size: 101 Copynumber: 1.9 Consensus size: 101
106602149 AGCTATCTGA
* * *
106602159 TACGCATAGTAGCCTGCACTTAGTACTACACACATGACCTCACCATCTGATACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACACACGACCTCAACATATGATACACGTAGTAGCCT
106602224 GCACTTAGTACTACACACGTGATCGAAGTCATTGAG
66 GCACTTAGTACTACACACGTGATCGAAGTCATTGAG
** * * *
106602260 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAATAGTATGGTACACGTAGTAGCC
1 TACGCATAGTAGCCTGCACTTAGTACTACACACACGACCTCAACA-TATGATACACGTAGTAGCC
106602324 TGCACTTAGTACTACACACGTG
65 TGCACTTAGTACTACACACGTG
106602346 TATTCACAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 4 0.05
101 73 0.95
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACACACGACCTCAACATATGATACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTCATTGAG
Found at i:106606135 original size:43 final size:43
Alignment explanation
Indices: 106606059--106606160 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
106606049 AATGCCTTAT
* **
106606059 CCTAGATATGGTCTTACATGGGATCTAAAATCGATGCCAATAG
1 CCTAGATATGGTCTTACACGAAATCTAAAATCGATGCCAATAG
* * * *
106606102 CCTAGCTATGGTCTTACACGAAATCTCATATCGATGCC-ATAT
1 CCTAGATATGGTCTTACACGAAATCTAAAATCGATGCCAATAG
* *
106606144 TCTAGATATAGTCTTAC
1 CCTAGATATGGTCTTAC
106606161 GCGTAAACTC
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
42 17 0.35
43 32 0.65
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (43 bp):
CCTAGATATGGTCTTACACGAAATCTAAAATCGATGCCAATAG
Found at i:106609829 original size:37 final size:37
Alignment explanation
Indices: 106609779--106609860 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
106609769 CTTTGTCTTC
*
106609779 TAATTTCT-ATTGAAGATGATGAGATTAAAGCTTATTT
1 TAATTT-TGATTGAAGATGATGAGATGAAAGCTTATTT
106609816 TAATTTTGATTGAAGATGATGAGATGAAAGCTTATTT
1 TAATTTTGATTGAAGATGATGAGATGAAAGCTTATTT
*
106609853 TAACTTTG
1 TAATTTTG
106609861 TTTTATTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 41 0.98
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (37 bp):
TAATTTTGATTGAAGATGATGAGATGAAAGCTTATTT
Found at i:106610661 original size:28 final size:29
Alignment explanation
Indices: 106610620--106610680 Score: 106
Period size: 28 Copynumber: 2.1 Consensus size: 29
106610610 GGCAATACTT
106610620 TCAAGAACACTTTATCTCTAATCTAAAAC
1 TCAAGAACACTTTATCTCTAATCTAAAAC
*
106610649 TCAA-AACACTTTATCTCTGATCTAAAAC
1 TCAAGAACACTTTATCTCTAATCTAAAAC
106610677 TCAA
1 TCAA
106610681 TATCTTTTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 27 0.87
29 4 0.13
ACGTcount: A:0.41, C:0.25, G:0.03, T:0.31
Consensus pattern (29 bp):
TCAAGAACACTTTATCTCTAATCTAAAAC
Found at i:106612294 original size:20 final size:20
Alignment explanation
Indices: 106612269--106612307 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
106612259 AATAGGGGTC
106612269 ACACGCACGTGTGGCTTGGG
1 ACACGCACGTGTGGCTTGGG
* *
106612289 ACACGCCCGTGTGGGTTGG
1 ACACGCACGTGTGGCTTGG
106612308 CCGTGTGGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.26, G:0.41, T:0.21
Consensus pattern (20 bp):
ACACGCACGTGTGGCTTGGG
Found at i:106625382 original size:16 final size:17
Alignment explanation
Indices: 106625361--106625393 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
106625351 CACATTGAAG
106625361 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
106625377 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
106625394 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:106626417 original size:20 final size:20
Alignment explanation
Indices: 106626380--106626419 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
106626370 ATTGGGCCTT
*
106626380 GCCCATATCAACATAGTTGG
1 GCCCATATCAACACAGTTGG
* *
106626400 GCCCATTTCAATACAGTTGG
1 GCCCATATCAACACAGTTGG
106626420 TCCATAACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:106627711 original size:18 final size:17
Alignment explanation
Indices: 106627671--106627703 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
106627661 GTACATAGAG
106627671 AGAA-AAAGAAAAGAAA
1 AGAAGAAAGAAAAGAAA
106627687 AGAAGAAAGAAAGAGAA
1 AGAAGAAAGAAA-AGAA
106627704 TGGAAGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AGAAGAAAGAAAAGAAA
Found at i:106629205 original size:60 final size:61
Alignment explanation
Indices: 106629111--106629231 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 61
106629101 CGTGTCTCTG
* *
106629111 CCCATGTGGATAAAAATAGGCTATTTACAAAGCCAATTTGCCATCCATTTTTCACATACCT
1 CCCATGTGGATAAAAATAGGCCATTTACAAAGCCAATTTGCCACCCATTTTTCACATACCT
106629172 CCCATGTGGAT-AAAATAGGCCATTTACAAAGCCAATTTGCCACCCATTTTTCACATACCT
1 CCCATGTGGATAAAAATAGGCCATTTACAAAGCCAATTTGCCACCCATTTTTCACATACCT
106629232 ACACAAGCTT
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
60 47 0.81
61 11 0.19
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (61 bp):
CCCATGTGGATAAAAATAGGCCATTTACAAAGCCAATTTGCCACCCATTTTTCACATACCT
Found at i:106640614 original size:25 final size:25
Alignment explanation
Indices: 106640567--106640616 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
106640557 GGTGTTACAC
*
106640567 GTTATTATTTAGAAAATCGTGCCCT
1 GTTATTATTTAGAAAATCATGCCCT
*
106640592 GTTATTATTTAGAAAATTATGCCCT
1 GTTATTATTTAGAAAATCATGCCCT
106640617 ACTTCTAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (25 bp):
GTTATTATTTAGAAAATCATGCCCT
Found at i:106641480 original size:26 final size:27
Alignment explanation
Indices: 106641423--106641481 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
106641413 TCTACCATAT
* * * *
106641423 AGGGGTATTATGGTCTTTTTTCCAATC
1 AGGGGTATTACGGTCATTTTACAAATC
106641450 AGGGGTATTACGGTCATTTTACAAATC
1 AGGGGTATTACGGTCATTTTACAAATC
106641477 -GGGGT
1 AGGGGT
106641482 CTTAACGACC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGGTATTACGGTCATTTTACAAATC
Found at i:106642084 original size:42 final size:42
Alignment explanation
Indices: 106642025--106642109 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
106642015 TCGATAGATT
106642025 AGTATTTAACCCATGATCCAAAAAGAACCAATGGAGTTCTAA
1 AGTATTTAACCCATGATCCAAAAAGAACCAATGGAGTTCTAA
*
106642067 AGTATTTAACCCATGATCCAAAAATAACCAATGGAGTTCTAA
1 AGTATTTAACCCATGATCCAAAAAGAACCAATGGAGTTCTAA
106642109 A
1 A
106642110 ACAATCATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.25
Consensus pattern (42 bp):
AGTATTTAACCCATGATCCAAAAAGAACCAATGGAGTTCTAA
Found at i:106645485 original size:48 final size:48
Alignment explanation
Indices: 106645409--106645545 Score: 247
Period size: 48 Copynumber: 2.9 Consensus size: 48
106645399 AGGTTGATAA
* * *
106645409 GATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTTTATGT
1 GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCGTTATGT
106645457 GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCGTTATGT
1 GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCGTTATGT
106645505 GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATC
106645546 AATATGATAA
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCGTTATGT
Found at i:106647139 original size:26 final size:27
Alignment explanation
Indices: 106647091--106647142 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
106647081 CTCGCTGCAA
106647091 TCTGGTGGACTCGCCACATATATCTGT
1 TCTGGTGGACTCGCCACATATATCTGT
*
106647118 TCTGGT-GACTTCGTCACA-ATATCTG
1 TCTGGTGGAC-TCGCCACATATATCTG
106647143 GCAGCCTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
TCTGGTGGACTCGCCACATATATCTGT
Found at i:106650392 original size:21 final size:21
Alignment explanation
Indices: 106650347--106650392 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
106650337 TAGACCAAGT
**
106650347 GTGTCTCTATGGGGAGCAAGT
1 GTGTCTCTATGGGGAGCAACA
*
106650368 GTGTCTCTATGGGGAGCACCA
1 GTGTCTCTATGGGGAGCAACA
106650389 GTGT
1 GTGT
106650393 TGTTCGTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.28
Consensus pattern (21 bp):
GTGTCTCTATGGGGAGCAACA
Found at i:106650392 original size:23 final size:21
Alignment explanation
Indices: 106650342--106650385 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
106650332 TTCATTAGAC
106650342 CAAGTGTGTCTCTATGGGGAG
1 CAAGTGTGTCTCTATGGGGAG
106650363 CAAGTGTGTCTCTATGGGGAG
1 CAAGTGTGTCTCTATGGGGAG
106650384 CA
1 CA
106650386 CCAGTGTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.27
Consensus pattern (21 bp):
CAAGTGTGTCTCTATGGGGAG
Found at i:106659901 original size:31 final size:31
Alignment explanation
Indices: 106659851--106659930 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 31
106659841 TCAAACATAT
106659851 ACTGGGCC-ATAGCCCTTTTCATA-TTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCA-AGTTTCATAAC
* **
106659883 ACTGGGCTGAAGCCTTTTCAAGTTTCATATT
1 ACTGGGCCGAAGCCTTTTCAAGTTTCATAAC
106659914 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
106659931 ACTGTAAACG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 1 0.02
31 31 0.74
32 9 0.21
33 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAGTTTCATAAC
Found at i:106660175 original size:24 final size:24
Alignment explanation
Indices: 106660124--106660265 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
106660114 GCTTTATCAT
*
106660124 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
106660149 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
106660173 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
106660196 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
106660220 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
106660243 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
106660266 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 45 0.41
24 52 0.48
25 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:106660199 original size:23 final size:23
Alignment explanation
Indices: 106660145--106660264 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
106660135 CCTAGCCTCT
*
106660145 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
106660168 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
106660192 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
106660215 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
106660239 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
106660262 TTT
1 TTT
106660265 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:106660266 original size:47 final size:47
Alignment explanation
Indices: 106660145--106660266 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
106660135 CCTAGCCTCT
* *
106660145 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
106660192 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
106660239 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
106660267 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:106660337 original size:9 final size:9
Alignment explanation
Indices: 106660323--106660379 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
106660313 ATCTCATGTG
106660323 CATATCATA
1 CATATCATA
*
106660332 CATATCATGTG
1 CATATCA--TA
106660343 CATATCATA
1 CATATCATA
* *
106660352 CATGTCATGTG
1 CATATCA--TA
106660363 CATATCATA
1 CATATCATA
106660372 CATATCAT
1 CATATCAT
106660380 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:106660339 original size:20 final size:20
Alignment explanation
Indices: 106660311--106660381 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
106660301 GCATTTATGA
*
106660311 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
106660331 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
106660351 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
106660371 ACATATCATGT
1 ACATATCATGT
106660382 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:106660346 original size:11 final size:11
Alignment explanation
Indices: 106660316--106660370 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
106660306 TATGAACATC
106660316 TCATGTGCATA
1 TCATGTGCATA
*
106660327 TCA--TACATA
1 TCATGTGCATA
106660336 TCATGTGCATA
1 TCATGTGCATA
* *
106660347 TCA--TACATG
1 TCATGTGCATA
106660356 TCATGTGCATA
1 TCATGTGCATA
106660367 TCAT
1 TCAT
106660371 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:106671238 original size:20 final size:20
Alignment explanation
Indices: 106671197--106671237 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
106671187 ACTTTTAGAT
*
106671197 AATTCTAAAAATATATTTAA
1 AATTCTAAAAATATATTAAA
*
106671217 AATTTTAAAAAT-TATTAAA
1 AATTCTAAAAATATATTAAA
106671236 AA
1 AA
106671238 AAACACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTCTAAAAATATATTAAA
Found at i:106673223 original size:68 final size:68
Alignment explanation
Indices: 106673075--106673228 Score: 161
Period size: 68 Copynumber: 2.2 Consensus size: 68
106673065 CTACCCAATT
* * * *
106673075 TATCTCGTAGCTCTGTTGTCTACATGGTGTCCTTCACTTGGTATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGTATCACACATGCGACCTAGCTACA
**
106673140 TTTA
65 CATA
* *
106673144 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGTATCACACATGCGACCTAGCTA
106673206 CTACATA
63 C-ACATA
106673213 GTATCTCGTAGCTCTC
1 -TATCTCGTAGCTCTC
106673229 CTGTACACAT
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 34 0.48
69 8 0.11
70 5 0.07
71 24 0.34
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATACTTCGTATCACACATGCGACCTAGCTACAC
ATA
Found at i:106675062 original size:40 final size:39
Alignment explanation
Indices: 106674972--106675120 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
106674962 ATAACCACGT
*
106674972 GCACAAATGCC-TCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
106675011 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
106675051 GCACAATTGCCTTC-GGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
106675090 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
106675121 TCATTCAATT
Statistics
Matches: 90, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
38 1 0.01
39 42 0.47
40 47 0.52
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:106681435 original size:18 final size:18
Alignment explanation
Indices: 106681412--106681448 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
106681402 CGGGATCCAT
106681412 GCTATAAACAAACACAAA
1 GCTATAAACAAACACAAA
106681430 GCTATAAACAAACACAAA
1 GCTATAAACAAACACAAA
106681448 G
1 G
106681449 TCAAATTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.59, C:0.22, G:0.08, T:0.11
Consensus pattern (18 bp):
GCTATAAACAAACACAAA
Found at i:106682981 original size:40 final size:40
Alignment explanation
Indices: 106682936--106683103 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
106682926 CGGAATATAA
106682936 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
106682976 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106683016 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
106683056 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
106683096 CCGGATAT
1 CCGGATAT
106683104 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106683086 original size:80 final size:80
Alignment explanation
Indices: 106682952--106683101 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
106682942 ATAACCACGT
* *
106682952 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
106683017 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
106683032 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
106683095 CCCGGAT
64 CCCGGAT
106683102 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:106688111 original size:40 final size:40
Alignment explanation
Indices: 106688045--106688263 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
106688035 ATTCGGATTG
*
106688045 ATAACCGGGCTAAG-CCCGAAGTCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
106688084 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
106688124 ATAACCGGGCCAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
106688163 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
106688203 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
106688243 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
106688264 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 8 0.05
39 59 0.35
40 100 0.60
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:106688176 original size:79 final size:79
Alignment explanation
Indices: 106688045--106688263 Score: 336
Period size: 79 Copynumber: 2.8 Consensus size: 79
106688035 ATTCGGATTG
* * *
106688045 ATAACCGGGCTAAGCCCGAAGTCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAA
106688110 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* *
106688124 ATAACCGGGCCAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAA
106688189 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* *
106688203 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
106688264 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
78 8 0.06
79 96 0.74
80 25 0.19
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACT
Done.