Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 348 of 770
Found at i:106696239 original size:40 final size:40
Alignment explanation
Indices: 106696130--106696349 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
106696120 ATTCGGATTG
*
106696130 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
106696169 ATATCCAGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
106696208 ATAACCAGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
106696248 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
106696288 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
106696328 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
106696350 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 64 0.39
40 101 0.61
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:106698406 original size:17 final size:17
Alignment explanation
Indices: 106698384--106698417 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
106698374 ATCTTTTACC
* *
106698384 TTTTAATTTACTTAACA
1 TTTTAACTTAATTAACA
106698401 TTTTAACTTAATTAACA
1 TTTTAACTTAATTAACA
106698418 ACTTACCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTAACTTAATTAACA
Found at i:106706259 original size:2 final size:2
Alignment explanation
Indices: 106706252--106706282 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
106706242 TTATAAACTA
106706252 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106706283 AAAGTCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106706713 original size:22 final size:24
Alignment explanation
Indices: 106706685--106706728 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
106706675 TATGGCAAGA
106706685 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
106706707 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
106706729 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:106707836 original size:21 final size:21
Alignment explanation
Indices: 106707811--106707857 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
106707801 TTTATATTTC
106707811 ATTATTGTTATTATAGTTTGA
1 ATTATTGTTATTATAGTTTGA
106707832 ATTATTGTTATTATAGTTTGA
1 ATTATTGTTATTATAGTTTGA
106707853 ATTAT
1 ATTAT
106707858 AGTAATACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (21 bp):
ATTATTGTTATTATAGTTTGA
Found at i:106707858 original size:12 final size:12
Alignment explanation
Indices: 106707820--106707860 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
106707810 CATTATTGTT
106707820 ATTATAGTTTGA
1 ATTATAGTTTGA
*
106707832 ATTATTG-TT--
1 ATTATAGTTTGA
106707841 ATTATAGTTTGA
1 ATTATAGTTTGA
106707853 ATTATAGT
1 ATTATAGT
106707861 AATACCACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 6 0.25
10 2 0.08
11 2 0.08
12 14 0.58
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.54
Consensus pattern (12 bp):
ATTATAGTTTGA
Found at i:106708625 original size:25 final size:24
Alignment explanation
Indices: 106708591--106708644 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
106708581 CCACAACTCA
*
106708591 TATGAGCTTCCCAATTTGCAGCAT-G
1 TATGAACTT-CCAATTTGCAGC-TCG
*
106708616 TATGAACTTCGAATTTGCAGCTCG
1 TATGAACTTCCAATTTGCAGCTCG
106708640 TATGA
1 TATGA
106708645 GCTTACCGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.04
24 17 0.65
25 8 0.31
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (24 bp):
TATGAACTTCCAATTTGCAGCTCG
Found at i:106708663 original size:25 final size:25
Alignment explanation
Indices: 106708633--106708700 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
106708623 TTCGAATTTG
* *
106708633 CAGCTCGTATGAGCTTACCGATTCA
1 CAGCTCGTATGAGCATACCAATTCA
106708658 CAGCTCGTGA-GAGCATACCAATTCA
1 CAGCTCGT-ATGAGCATACCAATTCA
* *
106708683 TAGCTCGCATGAGCATAC
1 CAGCTCGTATGAGCATAC
106708701 ATGTACATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 35 0.95
26 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (25 bp):
CAGCTCGTATGAGCATACCAATTCA
Found at i:106711260 original size:19 final size:19
Alignment explanation
Indices: 106711231--106711275 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
106711221 CAAATAATTT
106711231 AAAAATT-TAAAAAATAAA
1 AAAAATTATAAAAAATAAA
* *
106711249 AAAAATTATAAAAAGTTAA
1 AAAAATTATAAAAAATAAA
106711268 AAAAATTA
1 AAAAATTA
106711276 GTATGACGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (19 bp):
AAAAATTATAAAAAATAAA
Found at i:106727226 original size:24 final size:24
Alignment explanation
Indices: 106727182--106727252 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
106727172 AAACGTAAAC
*
106727182 ATATAAAAAACACAAAC--AATATA
1 ATAT-AAAAACAAAAACATAATATA
*
106727205 ATAGT-AAAACAAAAATATAATATA
1 ATA-TAAAAACAAAAACATAATATA
*
106727229 TTATAAAAACAAAAACATAATATA
1 ATATAAAAACAAAAACATAATATA
106727253 TATTATGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.22
23 4 0.10
24 27 0.68
ACGTcount: A:0.68, C:0.08, G:0.01, T:0.23
Consensus pattern (24 bp):
ATATAAAAACAAAAACATAATATA
Found at i:106730965 original size:19 final size:19
Alignment explanation
Indices: 106730941--106730981 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
106730931 ATTATTCCCA
*
106730941 AATTTAATTCCTAGACTCG
1 AATTTAATTCCTAGACCCG
106730960 AATTTAATTCCTAGACCCG
1 AATTTAATTCCTAGACCCG
106730979 AAT
1 AAT
106730982 CAGCTGCCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (19 bp):
AATTTAATTCCTAGACCCG
Found at i:106737171 original size:2 final size:2
Alignment explanation
Indices: 106737159--106737193 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
106737149 AGAAATGTAC
*
106737159 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106737194 ATGTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:106739581 original size:40 final size:40
Alignment explanation
Indices: 106739536--106739702 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
106739526 CGGAATATAA
106739536 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106739576 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106739616 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106739656 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106739695 CCGGATAT
1 CCGGATAT
106739703 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106739686 original size:80 final size:79
Alignment explanation
Indices: 106739552--106739702 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
106739542 ATAATCACGT
*
106739552 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
106739617 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
106739632 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
106739695 CCGGATAT
64 CCGGATAT
106739703 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:106740550 original size:17 final size:19
Alignment explanation
Indices: 106740527--106740572 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
106740517 AAGAAGCATG
106740527 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
106740545 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
106740563 AATCATGCTC
1 AATCATGCTC
106740573 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:106747594 original size:40 final size:40
Alignment explanation
Indices: 106747549--106747715 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
106747539 CGGAATATAA
106747549 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106747589 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106747629 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106747669 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106747708 CCGGATAT
1 CCGGATAT
106747716 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106747699 original size:80 final size:79
Alignment explanation
Indices: 106747565--106747715 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
106747555 ATAATCACGT
*
106747565 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
106747630 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
106747645 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
106747708 CCGGATAT
64 CCGGATAT
106747716 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:106748563 original size:17 final size:19
Alignment explanation
Indices: 106748540--106748585 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
106748530 AAGAAGCATG
106748540 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
106748558 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
106748576 AATCATGCTC
1 AATCATGCTC
106748586 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:106763023 original size:18 final size:17
Alignment explanation
Indices: 106762978--106763023 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
106762968 GATTATGTAG
*
106762978 AAAGAATAAAGAAATGA
1 AAAGAAAAAAGAAATGA
*
106762995 AAATAATAAAAGAAATAGA
1 AAAGAA-AAAAGAAAT-GA
106763014 AAAGAAAAAA
1 AAAGAAAAAA
106763024 AAAAGTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (17 bp):
AAAGAAAAAAGAAATGA
Found at i:106764380 original size:29 final size:29
Alignment explanation
Indices: 106764347--106764419 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
106764337 GTGACGAGAT
*
106764347 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
106764376 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
106764405 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
106764420 AAGCTGAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:106771086 original size:18 final size:17
Alignment explanation
Indices: 106771041--106771086 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
106771031 GATTATGTAG
*
106771041 AAAGAATAAAGAAATGA
1 AAAGAAAAAAGAAATGA
*
106771058 AAATAATAAAAGAAATAGA
1 AAAGAA-AAAAGAAAT-GA
106771077 AAAGAAAAAA
1 AAAGAAAAAA
106771087 AAAAGTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (17 bp):
AAAGAAAAAAGAAATGA
Found at i:106772441 original size:29 final size:28
Alignment explanation
Indices: 106772408--106772479 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 28
106772398 GTGACGAGAT
106772408 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
106772437 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATA
* *
106772465 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
106772480 AAGCTGAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 16 0.39
29 25 0.61
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGGAAAATA
Found at i:106772490 original size:28 final size:28
Alignment explanation
Indices: 106772411--106772490 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
106772401 ACGAGATTGG
* *
106772411 CACTAAGTGTGCGTGCTGGAAATATATGG
1 CACTAAGTGTGCGTGCT-GAAAAATATGA
*
106772440 CACTAAGTGTGCGTGCTGGAAAATATGA
1 CACTAAGTGTGCGTGCTGAAAAATATGA
* **
106772468 CACTATGTGTGCAAGCTGAAAAA
1 CACTAAGTGTGCGTGCTGAAAAA
106772491 GTACGGCACT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 27 0.61
29 17 0.39
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (28 bp):
CACTAAGTGTGCGTGCTGAAAAATATGA
Found at i:106782297 original size:40 final size:40
Alignment explanation
Indices: 106782189--106782398 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
106782179 CGGGATTTAA
* * * * *
106782189 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
106782229 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
106782269 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
106782309 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
106782349 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
106782389 CCGGATATAT
1 CCGGATATAT
106782399 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:106787004 original size:154 final size:154
Alignment explanation
Indices: 106786724--106787232 Score: 751
Period size: 154 Copynumber: 3.3 Consensus size: 154
106786714 AATCGGGTAT
***
106786724 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTACTAAAGCGCC
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTAAGGAAGCGCC
106786789 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACGTC
66 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACGTC
106786854 GTTTATTGCGAGCTTTGGTGGCAA
131 GTTTATTGCGAGCTTTGGTGGCAA
106786878 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTAAGGAAGCGCC
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTAAGGAAGCGCC
* *
106786943 GCTATAGGTCTATCTATAGCGGCATTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACATC
66 GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACGTC
106787008 GTTTATTGCGAGCTTTGGTGGCAA
131 GTTTATTGCGAGCTTTGGTGGCAA
** * *
106787032 TAGCGGCGCTTCACCAAAAATACCGCTATAGGTTTGAGTATTAGCGGCGTTTTTAAGGAAACGCC
1 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTAAGGAAGCGCC
* * * * * *
106787097 GCTATATGTCGA-CTTATAGCGGCGTTTGTACAAAAACGCCGCTAAAAGATTAAGTCGAAC-AGC
66 GCTATAGGTCTATC-TATAGCGGCGTTTTTATAAAAACGCCACT-AAAGATTAAGCCGAACGA-C
*
106787160 GTCGTTTATT-CTGAG-TTTCAGTGGCAA
128 GTCGTTTATTGC-GAGCTTT-GGTGGCAA
* * *
106787187 TAGCGGCGCTTC-CTAAAAAATGCCGCTATA-GATTGAGTATTAGCGG
1 TAGCGGCGCTTCAC-CAAAAACGCCGCTATAGGTTTGAGTATTAGCGG
106787233 CGCTTTTTTA
Statistics
Matches: 328, Mismatches: 21, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
153 1 0.00
154 266 0.81
155 61 0.19
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (154 bp):
TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTAAGGAAGCGCC
GCTATAGGTCTATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACGTC
GTTTATTGCGAGCTTTGGTGGCAA
Found at i:106787246 original size:40 final size:42
Alignment explanation
Indices: 106787202--106787382 Score: 194
Period size: 41 Copynumber: 4.4 Consensus size: 42
106787192 GCGCTTCCTA
*
106787202 AAAAATGCCGCTATA-GATTGAGTATTAGCGGCGCTTTTT-T
1 AAAAATGCCGCTATAGGATTGAGTTTTAGCGGCGCTTTTTGT
* * *
106787242 AAAAACGCCGCTA-AGGATTTGGGTTTTAGTGGCG-TTTTTGT
1 AAAAATGCCGCTATAGGA-TTGAGTTTTAGCGGCGCTTTTTGT
* * *
106787283 AAAAATGCCGCTA-AGGATTTGGGTTTTAGTGGCG-TTTTTAT
1 AAAAATGCCGCTATAGGA-TTGAGTTTTAGCGGCGCTTTTTGT
* * *
106787324 AAAAAATGCCGCAATAGGTTTGAGTTTTAGCGGCGCTTTTTGG
1 -AAAAATGCCGCTATAGGATTGAGTTTTAGCGGCGCTTTTTGT
*
106787367 AAAAACGCCGCTATAG
1 AAAAATGCCGCTATAG
106787383 ATGTAAACAA
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 19 0.16
41 53 0.44
42 40 0.33
43 8 0.07
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (42 bp):
AAAAATGCCGCTATAGGATTGAGTTTTAGCGGCGCTTTTTGT
Found at i:106787276 original size:155 final size:153
Alignment explanation
Indices: 106786724--106787301 Score: 667
Period size: 154 Copynumber: 3.7 Consensus size: 153
106786714 AATCGGGTAT
* * **
106786724 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTACTAAAGCGCC
1 TAGCGGCGCTTCACCAAAAATGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTAAGAAA-CGCC
*
106786789 GCTATAGG-TCT-ATCTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACG
65 GCTA-AGGATTTGAT-TATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACG
106786852 TCGTTTATTGCGAGCTTTGGTGGCAA
128 TCGTTTATTGCGAGCTTTGGTGGCAA
* * *
106786878 TAGCGGCGCTTCACCAAAAACGCCGCTATAGGTTTGAGTATTAGCGGTGTTTTTAAGGAAGCGCC
1 TAGCGGCGCTTCACCAAAAATGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTAA-GAAACGCC
* * *
106786943 GCTATAGG-TCT-ATCTATAGCGGCATTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACA
65 GCTA-AGGATTTGAT-TATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACG
106787006 TCGTTTATTGCGAGCTTTGGTGGCAA
128 TCGTTTATTGCGAGCTTTGGTGGCAA
*
106787032 TAGCGGCGCTTCACCAAAAATACCGCTATAGGTTTGAGTATTAGCGGCGTTTTTAAGGAAACGCC
1 TAGCGGCGCTTCACCAAAAATGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTAA-GAAACGCC
* * * * * *
106787097 GCT-A-TATGTCGACTTATAGCGGCGTTTGTACAAAAACGCCGCTAAAAGATTAAGTCGAAC-AG
65 GCTAAGGAT-TTGA-TTATAGCGGCGTTTTTATAAAAACGCCACT-AAAGATTAAGCCGAACGA-
*
106787159 CGTCGTTTATT-CTGAG-TTTCAGTGGCAA
126 CGTCGTTTATTGC-GAGCTTT-GGTGGCAA
* *
106787187 TAGCGGCGCTTC-CTAAAAAATGCCGCTATA-GATTGAGTATTAGCGGCGCTTTTTTAA-AAACG
1 TAGCGGCGCTTCAC-CAAAAATGCCGCTATAGGTTTGAGTATTAGCGGCG--TTTTTAAGAAACG
* * * * * * *
106787249 CCGCTAAGGATTTGGGTTTTAGTGGCGTTTTTGTAAAAATGCCGCTAAGGATT
63 CCGCTAAGGATTT-GATTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATT
106787302 TGGGTTTTAG
Statistics
Matches: 377, Mismatches: 32, Indels: 30
0.86 0.07 0.07
Matches are distributed among these distances:
152 2 0.01
154 275 0.73
155 90 0.24
156 10 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (153 bp):
TAGCGGCGCTTCACCAAAAATGCCGCTATAGGTTTGAGTATTAGCGGCGTTTTTAAGAAACGCCG
CTAAGGATTTGATTATAGCGGCGTTTTTATAAAAACGCCACTAAAGATTAAGCCGAACGACGTCG
TTTATTGCGAGCTTTGGTGGCAA
Found at i:106787904 original size:14 final size:14
Alignment explanation
Indices: 106787857--106787907 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
106787847 TTTTAACCCC
106787857 TAAACCCATAAACTA
1 TAAACCC-TAAACTA
* * *
106787872 TAGACCTTAAA-TT
1 TAAACCCTAAACTA
106787885 TGAAACCCTAAACTA
1 T-AAACCCTAAACTA
106787900 TAAACCCT
1 TAAACCCT
106787908 TAATTAATGA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
13 2 0.07
14 19 0.68
15 7 0.25
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:106788417 original size:7 final size:7
Alignment explanation
Indices: 106788407--106788476 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
106788397 GTTAAGGGGA
106788407 TAGGGTT
1 TAGGGTT
*
106788414 TAGGATT
1 TAGGGTT
*
106788421 TAGTGTT
1 TAGGGTT
**
106788428 TAAAGTT
1 TAGGGTT
106788435 TAGGGATT
1 TAGGG-TT
*
106788443 AAGGGTT
1 TAGGGTT
*
106788450 TATGGTT
1 TAGGGTT
*
106788457 TAAGGTT
1 TAGGGTT
*
106788464 CAAGGGTT
1 -TAGGGTT
106788472 TAGGG
1 TAGGG
106788477 GTTAATGGGA
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
7 36 0.77
8 11 0.23
ACGTcount: A:0.24, C:0.01, G:0.34, T:0.40
Consensus pattern (7 bp):
TAGGGTT
Found at i:106788450 original size:22 final size:21
Alignment explanation
Indices: 106788411--106788473 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
106788401 AGGGGATAGG
* *
106788411 GTTTAGGATTTAGTGTTTAAA
1 GTTTAGGATTAAGGGTTTAAA
**
106788432 GTTTAGGGATTAAGGGTTTATG
1 GTTTA-GGATTAAGGGTTTAAA
106788454 GTTTAAGG-TTCAAGGGTTTA
1 GTTT-AGGATT-AAGGGTTTA
106788474 GGGGTTAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 7 0.20
22 27 0.77
23 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.30, T:0.43
Consensus pattern (21 bp):
GTTTAGGATTAAGGGTTTAAA
Found at i:106788480 original size:80 final size:80
Alignment explanation
Indices: 106788379--106788566 Score: 236
Period size: 80 Copynumber: 2.4 Consensus size: 80
106788369 TTAACATTTA
* * * *
106788379 AAGGTT-GAGGGTCTAAGGGTTAAGGGGATAGGGTTTAGGATTTAGTGTTTAAAGTTTAGGGATT
1 AAGGTTAGAGGGTTTAGGGGTTAAGGGGACAGGATTTAGGATTTAGTGTTTAAAGTTTAGGGATT
*
106788443 AAGGGTTTATGGTTT
66 AAGGGTTAATGGTTT
* * * * *
106788458 AAGGTTCA-AGGGTTTAGGGGTTAATGGGACATGATTTTGGGTTTAGTGTTTAAATTTTAGGGAT
1 AAGGTT-AGAGGGTTTAGGGGTTAAGGGGACAGGATTTAGGATTTAGTGTTTAAAGTTTAGGGAT
106788522 TAAGGGTTAATGGTTT
65 TAAGGGTTAATGGTTT
* *
106788538 AGGGTTATGAGGGTTTAGGGATTAAGGGG
1 AAGGTTA-GAGGGTTTAGGGGTTAAGGGG
106788567 GCATGGGTTA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 7 0.08
80 67 0.73
81 18 0.20
ACGTcount: A:0.25, C:0.02, G:0.37, T:0.37
Consensus pattern (80 bp):
AAGGTTAGAGGGTTTAGGGGTTAAGGGGACAGGATTTAGGATTTAGTGTTTAAAGTTTAGGGATT
AAGGGTTAATGGTTT
Found at i:106791923 original size:64 final size:64
Alignment explanation
Indices: 106791852--106792153 Score: 541
Period size: 64 Copynumber: 4.7 Consensus size: 64
106791842 TAATATTTCT
* *
106791852 ATATTTCTATCACAATTTTTAATGAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
* *
106791916 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATATAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
*
106791980 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCTCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
*
106792044 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
*
106792108 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATAT
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATAT
106792154 CAATAAAATT
Statistics
Matches: 231, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 231 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
Found at i:106793441 original size:24 final size:24
Alignment explanation
Indices: 106793414--106793481 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
106793404 ATTATTATTG
*
106793414 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
106793438 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
106793462 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
106793482 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:106793702 original size:15 final size:15
Alignment explanation
Indices: 106793658--106793713 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
106793648 AACGACATGT
106793658 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
106793674 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
106793687 ATATTATTTAATTAA
1 ATATTATTTAATTAA
106793702 ATATTATTTAAT
1 ATATTATTTAAT
106793714 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:106793830 original size:9 final size:9
Alignment explanation
Indices: 106793818--106794034 Score: 125
Period size: 9 Copynumber: 23.6 Consensus size: 9
106793808 TATTTGATAT
*
106793818 CATAATTTA
1 CATAACTTA
106793827 CATAACTTA
1 CATAACTTA
* *
106793836 TATAACATA
1 CATAACTTA
*
106793845 TATAACTTA
1 CATAACTTA
106793854 CATAACTTA
1 CATAACTTA
* *
106793863 TATAACATA
1 CATAACTTA
106793872 CATAACTTA
1 CATAACTTA
*
106793881 TATAACTTA
1 CATAACTTA
*
106793890 TATAACTTA
1 CATAACTTA
* *
106793899 GATAA-ATA
1 CATAACTTA
**
106793907 TGTAACTTA
1 CATAACTTA
106793916 CATAACTTA
1 CATAACTTA
106793925 CATAATACTTA
1 CAT-A-ACTTA
* *
106793936 AATATATTTTATA
1 CATA-A--CT-TA
*
106793949 TCATAATTTA
1 -CATAACTTA
106793959 CATAACTTA
1 CATAACTTA
106793968 CATAACTTA
1 CATAACTTA
* *
106793977 GATAA-ATA
1 CATAACTTA
* *
106793985 TATAATTTA
1 CATAACTTA
*
106793994 CATAA-ATA
1 CATAACTTA
* * *
106794002 TATATCATA
1 CATAACTTA
*
106794011 TCATAAATTA
1 -CATAACTTA
106794021 CATAACTTA
1 CATAACTTA
106794030 CATAA
1 CATAA
106794035 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
8 16 0.10
9 121 0.74
10 11 0.07
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:106793849 original size:27 final size:27
Alignment explanation
Indices: 106793814--106794034 Score: 144
Period size: 27 Copynumber: 8.0 Consensus size: 27
106793804 AATATATTTG
*
106793814 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACTTATATAAC
106793842 ATATATAACTTACATAACTTATATAAC
1 ATATATAACTTACATAACTTATATAAC
* *
106793869 ATACATAACTTATATAACTTATATAAC
1 ATATATAACTTACATAACTTATATAAC
* * * ** *
106793896 TTAGATAA-ATATGTAACTTACATAAC
1 ATATATAACTTACATAACTTATATAAC
* * * *
106793922 TTACATAATACTTAAATATATTTTATATCATA-
1 ATATAT-A-ACTTACATA-A-CTTATAT-A-AC
* *
106793954 ATTTACATAACTTACATAACTTAGATAA-
1 A--TATATAACTTACATAACTTATATAAC
* * *
106793982 ATATATAATTTACATAA-ATATATATC
1 ATATATAACTTACATAACTTATATAAC
* *
106794008 ATATCATAAATTACATAACTTACATAA
1 ATAT-ATAACTTACATAACTTATATAA
106794035 TACTTAAATA
Statistics
Matches: 154, Mismatches: 27, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
25 5 0.03
26 38 0.25
27 66 0.43
28 12 0.08
29 5 0.03
30 6 0.04
31 6 0.04
32 9 0.06
33 2 0.01
34 5 0.03
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (27 bp):
ATATATAACTTACATAACTTATATAAC
Found at i:106793973 original size:105 final size:105
Alignment explanation
Indices: 106793834--106794058 Score: 276
Period size: 105 Copynumber: 2.2 Consensus size: 105
106793824 TTACATAACT
* * * * *
106793834 TATATAACATAT-ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTT
1 TATATATCATATCATAACTTACATAACTTACATAACATACATAA-ATATATAACTTACATAA-AT
* *
106793898 AGATA-AATAT-GTAACTTACATAACTTACATAATACTTAAA
64 AGATATAATATCATAAATTACATAACTTACATAATACTTAAA
* * * * * * *
106793938 TATATTTTATATCATAATTTACATAACTTACATAACTTAGATAAATATATAATTTACATAAATAT
1 TATATATCATATCATAACTTACATAACTTACATAACATACATAAATATATAACTTACATAAATAG
*
106794003 ATATCATATCATAAATTACATAACTTACATAATACTTAAA
66 ATATAATATCATAAATTACATAACTTACATAATACTTAAA
106794043 TATATATCATATCATA
1 TATATATCATATCATA
106794059 CATAACTAGT
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
103 5 0.05
104 27 0.27
105 69 0.68
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (105 bp):
TATATATCATATCATAACTTACATAACTTACATAACATACATAAATATATAACTTACATAAATAG
ATATAATATCATAAATTACATAACTTACATAATACTTAAA
Found at i:106793998 original size:17 final size:17
Alignment explanation
Indices: 106793946--106794005 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
106793936 AATATATTTT
106793946 ATATCATAATTTACATAA
1 ATAT-ATAATTTACATAA
* * * *
106793964 CTTACATAACTTAGATAA
1 -ATATATAATTTACATAA
106793982 ATATATAATTTACATAA
1 ATATATAATTTACATAA
106793999 ATATATA
1 ATATATA
106794006 TCATATCATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
17 20 0.61
18 11 0.33
19 2 0.06
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATATAATTTACATAA
Found at i:106799998 original size:31 final size:31
Alignment explanation
Indices: 106799963--106800041 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
106799953 AGAATTAATA
* *
106799963 TTTTTGGTTGTATTTTATGTTAAATTTGCTG
1 TTTTTGGTTGCATTTTATATTAAATTTGCTG
* * *
106799994 TTTTTGGCTGCATTTTATATTATATTTGTTG
1 TTTTTGGTTGCATTTTATATTAAATTTGCTG
* *
106800025 TATTTGGTTGGATTTTA
1 TTTTTGGTTGCATTTTA
106800042 ATGCAGGAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.16, C:0.04, G:0.19, T:0.61
Consensus pattern (31 bp):
TTTTTGGTTGCATTTTATATTAAATTTGCTG
Found at i:106800140 original size:43 final size:41
Alignment explanation
Indices: 106800093--106800450 Score: 331
Period size: 43 Copynumber: 8.2 Consensus size: 41
106800083 ATCTGCCAAA
* * *
106800093 TTTAGCGGCGTTTGTAAAAAAAGCGCCACTAAAAGCCTTGACC
1 TTTAGCGGCGTTT-TCAACAAA-CGCCGCTAAAAGCCTTGACC
*
106800136 TTTAGCGGCGCTTTTCCAACAAACGCCGCTAAAAGCCATGACC
1 TTTAGCGGCG-TTTT-CAACAAACGCCGCTAAAAGCCTTGACC
* * *
106800179 TTTAGCAGCGCCTTTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGC-G-GCGTTTTCAACAAACGCCGCTAAAAGCCTTGACC
* *
106800222 TTTAGCGGCGCCTTTCCCACAAACGCCAAACGCTGCTAAAAGCCTTGACC
1 TTTAGCGGCG--TTT---TC-AA---CAAACGCCGCTAAAAGCCTTGACC
* * * *
106800272 TTTAGCGGCGCCTTTCCCACAAACGCCGTTAAAAGCCTTGACT
1 TTTAGCGGCG--TTTTCAACAAACGCCGCTAAAAGCCTTGACC
* * * *
106800315 TTTAGCAGCGCCTTTCCCACAAACGCCGCTAAAAGTCTTGACC
1 TTTAGC-G-GCGTTTTCAACAAACGCCGCTAAAAGCCTTGACC
*
106800358 TTTAGCGGCGCTTTTCCCACAAACG-CGCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTT-CAACAAACGCCGCTAAAAGCCTTGACC
*
106800400 TTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTTC-AACAAACGCCGCTAAAAGCCTTGACC
106800443 TTTAGCGG
1 TTTAGCGG
106800451 TGCTTTTTTC
Statistics
Matches: 272, Mismatches: 24, Indels: 38
0.81 0.07 0.11
Matches are distributed among these distances:
41 5 0.02
42 44 0.16
43 164 0.60
44 13 0.05
45 4 0.01
46 2 0.01
47 2 0.01
50 38 0.14
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (41 bp):
TTTAGCGGCGTTTTCAACAAACGCCGCTAAAAGCCTTGACC
Found at i:106800238 original size:86 final size:87
Alignment explanation
Indices: 106800116--106800450 Score: 471
Period size: 86 Copynumber: 3.8 Consensus size: 87
106800106 GTAAAAAAAG
* * *
106800116 CGCCACTAAAAGCCTTGACCTTTAGCGGCGCTTTTC-CAACAAACGCCGCTAAAAGCCATGACCT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTTCACAACAAACGCCGCTAAAAGCCTTGACCT
*
106800180 TTAGCAGCGCCTTTCCCACAAA
66 TTAGCGGCGCCTTTCCCACAAA
*
106800202 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTTCCCACAAACGCCAAACGCTGCTAAAAGCCT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTT--CAC-AA---CAAACGCCGCTAAAAGCCT
106800267 TGACCTTTAGCGGCGCCTTTCCCACAAA
60 TGACCTTTAGCGGCGCCTTTCCCACAAA
* * * * *
106800295 CGCCGTTAAAAGCCTTGACTTTTAGCAGCGCCTTTC-CCACAAACGCCGCTAAAAGTCTTGACCT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTTCACAACAAACGCCGCTAAAAGCCTTGACCT
*
106800359 TTAGCGGCGCTTTTCCCACAAA
66 TTAGCGGCGCCTTTCCCACAAA
* *
106800381 CG-CGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCTC-ACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTTCACAACAAACGCCGCTAAAAGCCTTGACCT
106800444 TTAGCGG
66 TTAGCGG
106800451 TGCTTTTTTC
Statistics
Matches: 224, Mismatches: 17, Indels: 17
0.87 0.07 0.07
Matches are distributed among these distances:
85 61 0.27
86 80 0.36
88 1 0.00
89 2 0.01
90 3 0.01
91 1 0.00
93 76 0.34
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (87 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTTCACAACAAACGCCGCTAAAAGCCTTGACCT
TTAGCGGCGCCTTTCCCACAAA
Found at i:106800365 original size:136 final size:128
Alignment explanation
Indices: 106800121--106800448 Score: 512
Period size: 136 Copynumber: 2.5 Consensus size: 128
106800111 AAAAGCGCCA
* *
106800121 CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCAACAAACGCCGCTAAAAGCCATGACCTTTAGCA
1 CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCA
106800186 GCGCCTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCCTTTCCCACAAACGCCAA
66 GCGCCTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG-CTTTCCC-C--A---CAA
106800251 ACGCTG
124 ACGC-G
* * *
106800257 CTAAAAGCCTTGACCTTTAGCGGCGCCTTTCCCACAAACGCCGTTAAAAGCCTTGACTTTTAGCA
1 CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCA
* *
106800322 GCGCCTTTCCCACAAACGCCGCTAAAAGTCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCG
66 GCGCCTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCCACAAACGCG
*
106800385 CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
1 CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
106800449 GGTGCTTTTT
Statistics
Matches: 181, Mismatches: 11, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
128 61 0.34
129 7 0.04
132 1 0.01
134 1 0.01
135 6 0.03
136 105 0.58
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (128 bp):
CTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCA
GCGCCTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCCACAAACGCG
Found at i:106801178 original size:20 final size:19
Alignment explanation
Indices: 106801142--106801223 Score: 85
Period size: 19 Copynumber: 4.3 Consensus size: 19
106801132 TGATTCTATA
* *
106801142 TTTA-TATTTAATCTAATT
1 TTTATTATTTATTTTAATT
106801160 TTTATTATTTATTTCTAATT
1 TTTATTATTTATTT-TAATT
*
106801180 TTTATTATTTATTTTAGTT
1 TTTATTATTTATTTTAATT
* * * *
106801199 TTGATTCTATATTTTTATT
1 TTTATTATTTATTTTAATT
106801218 TTTATT
1 TTTATT
106801224 TTAATTTGAT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
18 4 0.08
19 30 0.57
20 19 0.36
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTATTATTTATTTTAATT
Found at i:106801200 original size:19 final size:18
Alignment explanation
Indices: 106801121--106801223 Score: 73
Period size: 20 Copynumber: 5.4 Consensus size: 18
106801111 AAGTTTGGTG
*
106801121 TTTTATTATTTTGATTCTAT
1 TTTTATTA-TTT-ATTTTAT
* * *
106801141 ATTTA-TATTTAATCTAAT
1 TTTTATTATTT-ATTTTAT
106801159 TTTTATTATTTATTTCTAAT
1 TTTTATTATTTATTT-T-AT
106801179 TTTTATTATTTATTTTAGT
1 TTTTATTATTTATTTTA-T
* * *
106801198 TTTGATTCTATATTTTTAT
1 TTTTATTATTTA-TTTTAT
106801217 TTTTATT
1 TTTTATT
106801224 TTAATTTGAT
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
18 15 0.23
19 25 0.38
20 26 0.39
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTATTATTTATTTTAT
Found at i:106801217 original size:6 final size:6
Alignment explanation
Indices: 106801157--106801230 Score: 60
Period size: 6 Copynumber: 11.7 Consensus size: 6
106801147 ATTTAATCTA
* * *
106801157 ATTTTT ATTATTT ATTTCTA ATTTTT ATTATTT A-TTTT AGTTTTG ATTCTAT
1 ATTTTT ATT-TTT ATTT-TT ATTTTT ATT-TTT ATTTTT A-TTTTT ATT-TTT
*
106801209 ATTTTT ATTTTT ATTTTA ATTT
1 ATTTTT ATTTTT ATTTTT ATTT
106801231 GATAATGAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
5 4 0.07
6 28 0.51
7 23 0.42
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (6 bp):
ATTTTT
Found at i:106801423 original size:43 final size:43
Alignment explanation
Indices: 106801360--106801465 Score: 185
Period size: 43 Copynumber: 2.5 Consensus size: 43
106801350 TTTTAAATTT
106801360 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
* * *
106801403 CATGACCTTTAGCGGTGTTTGTTGGAAAGGCGCCGCTAAAGGC
1 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
106801446 CATGACCTTTAGCGGCGTTT
1 CATGACCTTTAGCGGCGTTT
106801466 TTTCAAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
Found at i:106802096 original size:22 final size:22
Alignment explanation
Indices: 106802062--106802113 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
106802052 TGACTTAGGT
*
106802062 GATATCGCGATACCCTA-AAGAG
1 GATATCGCAATA-CCTAGAAGAG
*
106802084 GATATTGCAATACCTAGAAGAG
1 GATATCGCAATACCTAGAAGAG
106802106 GATATCGC
1 GATATCGC
106802114 GATATCTCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (22 bp):
GATATCGCAATACCTAGAAGAG
Found at i:106803480 original size:36 final size:34
Alignment explanation
Indices: 106803439--106803507 Score: 93
Period size: 36 Copynumber: 2.0 Consensus size: 34
106803429 ATCCAACAAA
* * *
106803439 GCCCGATAAGTGATAATTCTTGAAATAAATGATAAT
1 GCCCGATAAATGATAATGCTCG--ATAAATGATAAT
106803475 GCCCGATAAATGATAATGCTCGATAAATGATAA
1 GCCCGATAAATGATAATGCTCGATAAATGATAA
106803508 ATGATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 11 0.37
36 19 0.63
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (34 bp):
GCCCGATAAATGATAATGCTCGATAAATGATAAT
Found at i:106803485 original size:17 final size:17
Alignment explanation
Indices: 106803463--106803507 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
106803453 AATTCTTGAA
106803463 ATAAATGATAATGCCCG
1 ATAAATGATAATGCCCG
*
106803480 ATAAATGATAATGCTCG
1 ATAAATGATAATGCCCG
106803497 ATAAATGATAA
1 ATAAATGATAA
106803508 ATGATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.27
Consensus pattern (17 bp):
ATAAATGATAATGCCCG
Found at i:106805382 original size:55 final size:55
Alignment explanation
Indices: 106805270--106805385 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
106805260 GACACTGGCA
* *
106805270 TGTGTCTCAGCCATGTGTGACACACAGCCTAGCACATGGGCATAGGACCTGGTCG
1 TGTGTCTCAGCCATGTGTGACACACAGCCTAGCACATGGGCATAGGACCTAGCCG
* * * * * *
106805325 TGTGTCTTAGCCATGTGTGACACACGGCCTTGCTCATGGGCGT-GTGACTTAGCCG
1 TGTGTCTCAGCCATGTGTGACACACAGCCTAGCACATGGGCATAG-GACCTAGCCG
106805380 TGTGTC
1 TGTGTC
106805386 ATCTACATCT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 1 0.02
55 51 0.98
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.27
Consensus pattern (55 bp):
TGTGTCTCAGCCATGTGTGACACACAGCCTAGCACATGGGCATAGGACCTAGCCG
Found at i:106806723 original size:16 final size:16
Alignment explanation
Indices: 106806702--106806735 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
106806692 GATACTCACC
106806702 TTTCTTTCT-TTTGTTT
1 TTTCTTTCTCTTT-TTT
106806718 TTTCTTTCTCTTTTTT
1 TTTCTTTCTCTTTTTT
106806734 TT
1 TT
106806736 AAGCACGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTCTTTCTCTTTTTT
Found at i:106812179 original size:38 final size:38
Alignment explanation
Indices: 106812126--106812334 Score: 121
Period size: 38 Copynumber: 5.0 Consensus size: 38
106812116 TTTCAAATTA
106812126 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
106812164 ACATGTTTAATCGTGGTATATCTACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* * *
106812205 GAATCAATATATGTAACCGTGGCATATCCACTTAGCATCATGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
106812249 ACATGTATCAATATGTATGATCGTGGTATATCCACTCAGCACCACGTT
1 ACATG------TA--TA--ACCGTGGCATATCCACTTAGCACCACGTT
* * * *
106812297 ACACGTATAACCATGGTATATCCACTTATCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
106812335 TTTCCATTCC
Statistics
Matches: 132, Mismatches: 22, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
38 57 0.43
39 1 0.01
40 4 0.03
41 2 0.02
42 3 0.02
43 1 0.01
44 2 0.02
45 3 0.02
46 7 0.05
47 24 0.18
48 28 0.21
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:106812274 original size:48 final size:48
Alignment explanation
Indices: 106812171--106812304 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 48
106812161 GTTACATGTT
* * *
106812171 TAATCGTGGTATATCTACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATA
* * * * *
106812218 TAACCGTGGCATATCCACTTAGCATCATGTTACATGTATCAATATGTA
1 TAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATA
* * *
106812266 TGATCGTGGTATATCCACTCAGCACCACGTTACACGTAT
1 TAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
106812305 AACCATGGTA
Statistics
Matches: 71, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
47 27 0.38
48 44 0.62
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (48 bp):
TAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATA
Found at i:106814330 original size:10 final size:10
Alignment explanation
Indices: 106814302--106814331 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
106814292 AGTGCGGAGA
106814302 AAAACTAAAG
1 AAAACTAAAG
106814312 AAAACCTAAAG
1 AAAA-CTAAAG
106814323 AAAACTAAA
1 AAAACTAAA
106814332 CCTAAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAACTAAAG
Found at i:106817215 original size:19 final size:20
Alignment explanation
Indices: 106817186--106817225 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
106817176 AAAAACCTGT
*
106817186 AAAACTTTTTATTATCTCCC
1 AAAACTTTTTACTATCTCCC
*
106817206 AAAA-TTTTTACTCTCTCCC
1 AAAACTTTTTACTATCTCCC
106817225 A
1 A
106817226 CTTTCCCCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAACTTTTTACTATCTCCC
Found at i:106818392 original size:28 final size:29
Alignment explanation
Indices: 106818312--106818393 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 29
106818302 CAAAATATGT
* * * *
106818312 TATATGTGAGCATTTATGGTTGATTCTGT
1 TATATGAGAGCCTTTGTGGTTGATTCTGA
* * *
106818341 TTTATGAGAGCCTTTGTAGCTGATTCT-A
1 TATATGAGAGCCTTTGTGGTTGATTCTGA
106818369 TATATGAGAGTCC-TTGTGGTTGATT
1 TATATGAGAG-CCTTTGTGGTTGATT
106818394 ATGTTCAATG
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
28 19 0.45
29 23 0.55
ACGTcount: A:0.21, C:0.10, G:0.24, T:0.45
Consensus pattern (29 bp):
TATATGAGAGCCTTTGTGGTTGATTCTGA
Found at i:106818789 original size:18 final size:18
Alignment explanation
Indices: 106818766--106818803 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
106818756 AAGCGGACTC
106818766 TATATTAATGAAAAGGGA
1 TATATTAATGAAAAGGGA
106818784 TATATTAATGAAAAGGGA
1 TATATTAATGAAAAGGGA
106818802 TA
1 TA
106818804 AAGGTTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (18 bp):
TATATTAATGAAAAGGGA
Found at i:106821216 original size:12 final size:12
Alignment explanation
Indices: 106821201--106821230 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
106821191 AATGATTAAA
106821201 TAAATTAGAAAT
1 TAAATTAGAAAT
*
106821213 TAAATTGGAAAT
1 TAAATTAGAAAT
106821225 TAAATT
1 TAAATT
106821231 CGGATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (12 bp):
TAAATTAGAAAT
Found at i:106826166 original size:35 final size:35
Alignment explanation
Indices: 106826122--106826288 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
106826112 TCCTCATTGA
** *
106826122 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
106826157 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
106826197 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
106826232 AATATCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
106826267 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
106826289 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 85 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:106826205 original size:75 final size:73
Alignment explanation
Indices: 106826117--106826288 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
106826107 GGTTTTCCTC
** * * **
106826117 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
106826181 TCAGTATGG
65 TCAGTATGG
* *
106826190 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATATCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
106826255 CTCAGTATGG
64 CTCAGTATGG
106826265 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
106826289 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:106833637 original size:35 final size:35
Alignment explanation
Indices: 106833593--106833759 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
106833583 TCCTCATTGA
** *
106833593 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
106833628 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
106833668 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
106833703 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
106833738 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
106833760 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:106833676 original size:75 final size:73
Alignment explanation
Indices: 106833588--106833759 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
106833578 GGTTTTCCTC
** * * **
106833588 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
106833652 TCAGTATGG
65 TCAGTATGG
*
106833661 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
106833726 CTCAGTATGG
64 CTCAGTATGG
106833736 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
106833760 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:106841090 original size:35 final size:35
Alignment explanation
Indices: 106841046--106841212 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
106841036 TCCTCATTGA
** *
106841046 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
106841081 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
106841121 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
106841156 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
106841191 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
106841213 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:106841129 original size:75 final size:73
Alignment explanation
Indices: 106841041--106841212 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
106841031 GGTTTTCCTC
** * * **
106841041 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
106841105 TCAGTATGG
65 TCAGTATGG
*
106841114 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
106841179 CTCAGTATGG
64 CTCAGTATGG
106841189 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
106841213 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:106844136 original size:43 final size:43
Alignment explanation
Indices: 106844075--106844230 Score: 163
Period size: 43 Copynumber: 3.6 Consensus size: 43
106844065 CAATGTCATA
* * * **
106844075 TCCTAGATATGGTCTTACATGTTATCACATATTTAAGCCAATG
1 TCCTAGACATCGTCTTACATGTAATCACATATACAAGCCAATG
* * * * *
106844118 TCCTAGACATGGTCTTACACGAAATCATATA-ACGATGCCAATG
1 TCCTAGACATCGTCTTACATGTAATCACATATAC-AAGCCAATG
*
106844161 TCCTAGACATCGTCTTACATGTAATCACA-ATACAATGCCAATT
1 TCCTAGACATCGTCTTACATGTAATCACATATACAA-GCCAATG
* *
106844204 TCCCAGACATCGTCTTATATGTAATCA
1 TCCTAGACATCGTCTTACATGTAATCA
106844231 TATCTCGAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.02
43 92 0.98
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (43 bp):
TCCTAGACATCGTCTTACATGTAATCACATATACAAGCCAATG
Found at i:106846449 original size:17 final size:17
Alignment explanation
Indices: 106846427--106846460 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
106846417 AACTTGAGCC
*
106846427 TTTATTTATGTATTCAT
1 TTTATTCATGTATTCAT
*
106846444 TTTATTCATTTATTCAT
1 TTTATTCATGTATTCAT
106846461 GTACAAGCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTATTCATGTATTCAT
Found at i:106853517 original size:29 final size:29
Alignment explanation
Indices: 106853484--106853672 Score: 229
Period size: 29 Copynumber: 6.5 Consensus size: 29
106853474 GTGACGAGAT
106853484 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
106853513 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
106853542 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
106853571 TGGTACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
106853600 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
106853629 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
106853658 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
106853673 GAAATCGAGT
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.01
29 135 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:106861622 original size:31 final size:29
Alignment explanation
Indices: 106861570--106861755 Score: 163
Period size: 29 Copynumber: 6.5 Consensus size: 29
106861560 GTGACGAGAT
106861570 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
106861599 TGGCACTAAGTGTGCACATGCTGGAAATATA
1 TGGCACTAAGTGTG--CATGCTGGAAATATA
106861630 TGGCACTAAGTGTGCATGCTGG-AATAT-
1 TGGCACTAAGTGTGCATGCTGGAAATATA
106861657 T-G-ACT-A-TGTGCATCGCTGGAAATATA
1 TGGCACTAAGTGTGCAT-GCTGGAAATATA
* ** * ***
106861683 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
106861712 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
106861741 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
106861756 GAAATCGAGT
Statistics
Matches: 129, Mismatches: 16, Indels: 24
0.76 0.09 0.14
Matches are distributed among these distances:
23 7 0.05
24 6 0.05
25 8 0.06
26 1 0.01
27 2 0.02
28 10 0.08
29 60 0.47
30 5 0.04
31 30 0.23
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:106865444 original size:40 final size:39
Alignment explanation
Indices: 106865399--106865564 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
106865389 CGGAATATAA
106865399 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
106865439 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
106865478 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
106865518 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
106865557 CCGGATAT
1 CCGGATAT
106865565 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:106865521 original size:79 final size:79
Alignment explanation
Indices: 106865415--106865564 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
106865405 ATAATCACGT
*
106865415 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
106865478 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
106865494 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
106865559 GGATAT
66 GGATAT
106865565 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:106873441 original size:40 final size:40
Alignment explanation
Indices: 106873396--106873562 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
106873386 CGGAATATAA
106873396 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106873436 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106873476 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106873516 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106873555 CCGGATAT
1 CCGGATAT
106873563 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106873546 original size:80 final size:79
Alignment explanation
Indices: 106873412--106873562 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
106873402 ATAATCACGT
*
106873412 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
106873477 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
106873492 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
106873555 CCGGATAT
64 CCGGATAT
106873563 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:106877747 original size:29 final size:28
Alignment explanation
Indices: 106877715--106877788 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
106877705 GATTCAAGCC
* *
106877715 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
106877744 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
106877773 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
106877789 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:106879916 original size:40 final size:40
Alignment explanation
Indices: 106879840--106880026 Score: 139
Period size: 40 Copynumber: 4.7 Consensus size: 40
106879830 GCTACTCGTT
* *
106879840 CAAATGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
106879880 CAAATGCCTTCGGGACCTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
** * * *
106879920 CCCATGCCTTCGGG-CTTAGCCCGGGA-TCAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCC-GGATTTAGTAACTCGCA
* * ** * * *
106879959 CAAAGGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* * *
106880000 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACATAACCCGGAT
106880027 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 20, Indels: 13
0.78 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 28 0.23
40 60 0.50
41 27 0.22
42 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:106885028 original size:14 final size:13
Alignment explanation
Indices: 106885001--106885026 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106884991 TAAAATTAAA
106885001 AATATAAAAATTT
1 AATATAAAAATTT
106885014 AATATAAAAATTT
1 AATATAAAAATTT
106885027 TATCTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATAAAAATTT
Found at i:106893835 original size:16 final size:17
Alignment explanation
Indices: 106893802--106893836 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
106893792 TAATTATTTG
106893802 TTTTTTATTTATATAAA
1 TTTTTTATTTATATAAA
106893819 TTTTTTATTTATA-AAA
1 TTTTTTATTTATATAAA
106893835 TT
1 TT
106893837 GGCATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTTATTTATATAAA
Found at i:106903096 original size:15 final size:16
Alignment explanation
Indices: 106903076--106903105 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
106903066 CTGGAAAGAT
106903076 TATACATT-TCATATA
1 TATACATTCTCATATA
106903091 TATACATTCTCATAT
1 TATACATTCTCATAT
106903106 CTCATACTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (16 bp):
TATACATTCTCATATA
Found at i:106905404 original size:40 final size:40
Alignment explanation
Indices: 106905359--106905525 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
106905349 CGGAATATAA
106905359 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106905399 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106905439 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106905479 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106905518 CCGGATAT
1 CCGGATAT
106905526 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106905509 original size:80 final size:79
Alignment explanation
Indices: 106905375--106905525 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
106905365 ATAATCACGT
*
106905375 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
106905440 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
106905455 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
106905518 CCGGATAT
64 CCGGATAT
106905526 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:106912513 original size:40 final size:40
Alignment explanation
Indices: 106912468--106912634 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
106912458 CGGAATATAA
106912468 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
106912508 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106912548 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106912588 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106912627 CCGGATAT
1 CCGGATAT
106912635 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106912618 original size:80 final size:79
Alignment explanation
Indices: 106912484--106912634 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
106912474 ATAATCACGT
*
106912484 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
106912549 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
106912564 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
106912627 CCGGATAT
64 CCGGATAT
106912635 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:106924317 original size:27 final size:28
Alignment explanation
Indices: 106924261--106924330 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
106924251 AAATTCGTAC
106924261 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
106924289 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
106924316 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106924331 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:106926323 original size:27 final size:27
Alignment explanation
Indices: 106926282--106926540 Score: 265
Period size: 27 Copynumber: 9.6 Consensus size: 27
106926272 ACACTACAAT
106926282 GGGTATTTC-GATAATTTTACAAA-CTGA
1 GGGTATTTCAG-TAATTTTACAAATC-GA
* * *
106926309 GGGTGTTTCAGTAATTTCACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
106926336 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
106926363 GGGTGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
106926390 GGGTGTTT-TGATAATTTCACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* **
106926417 GGGTATTTCAATAATTTTATGAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
106926444 GGGTATTTCATTAATTTCAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
106926470 GGGTATTTCAATAATTTTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
106926497 GGGTACTTCGGTAATTTTACAAATTGG
1 GGGTATTTCAGTAATTTTACAAATCGA
*
106926524 GGGTATTTCGGTAATTT
1 GGGTATTTCAGTAATTT
106926541 CTCTTTATTA
Statistics
Matches: 198, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 24 0.12
27 172 0.87
28 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:106926382 original size:81 final size:81
Alignment explanation
Indices: 106926255--106926540 Score: 301
Period size: 81 Copynumber: 3.5 Consensus size: 81
106926245 TATGCTAAGA
* * * *
106926255 GGTATGTCGGTAATTTTAC-ACTACAATGGGTATTTCGATAATTTTACAAACTGAGGGTGTTTCA
1 GGTATTTCGGTAATTTTACAAAT-CGA-GGGTATTTCGGTAATTTTACAAACTGAGGGTGTTTCA
*
106926319 GTAATTTCACAAATCAAG
64 GTAATTTCACAAATCGAG
* *
106926337 GGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAA-TCGAGGGTGTTT-TG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACT-GAGGGTGTTTCAG
106926400 ATAATTTCACAAATCGAG
65 -TAATTTCACAAATCGAG
** ** ** * * * *
106926418 GGTATTTCAATAATTTTATGAATCGAGGGTATTTCATTAATTTCACAATC-GAGGGTATTTCAAT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGGGTGTTTCAGT
* * *
106926482 AATTTTATAAATCGGG
66 AATTTCACAAATCGAG
* * *
106926498 GGTACTTCGGTAATTTTACAAATTGGGGGTATTTCGGTAATTT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTT
106926541 CTCTTTATTA
Statistics
Matches: 168, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
80 59 0.35
81 87 0.52
82 20 0.12
83 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTGAGGGTGTTTCAGT
AATTTCACAAATCGAG
Found at i:106927515 original size:23 final size:23
Alignment explanation
Indices: 106927467--106927515 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
106927457 TTTAAAAGAA
* *
106927467 AAATCAAAATAAATTGCAAGATC
1 AAATCAAAATAAATTGCAAAAGC
106927490 AAATCAAAATAAATTGCAAAAGC
1 AAATCAAAATAAATTGCAAAAGC
106927513 AAA
1 AAA
106927516 AACTTGAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.18
Consensus pattern (23 bp):
AAATCAAAATAAATTGCAAAAGC
Found at i:106929748 original size:26 final size:27
Alignment explanation
Indices: 106929719--106929779 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
106929709 TAAAATAGTC
*
106929719 ATTTTAC-CTACAGGGGTATGTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
* * *
106929745 ATTTTACACTATAATGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
106929772 ATTTTACA
1 ATTTTACA
106929780 AACTGGGGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATGTCGATA
Found at i:106929857 original size:27 final size:26
Alignment explanation
Indices: 106929732--106929859 Score: 87
Period size: 27 Copynumber: 4.8 Consensus size: 26
106929722 TTACCTACAG
* *
106929732 GGGTATGTCGATAATTTTACACTAT-AA
1 GGGTATTTCGATAATTTTACA--ATCGA
* * *
106929759 TGGTATTTCGATAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAATC-GA
* * * *
106929786 GGGTGTTTTGGTAATTTTACAAATCAA
1 GGGTATTTCGATAATTTTAC-AATCGA
* * *
106929813 CGGTATTTTGGTAATTTTACAGATCGA
1 GGGTATTTCGATAATTTTACA-ATCGA
*
106929840 GGGTATTTCGATAGTTTTAC
1 GGGTATTTCGATAATTTTAC
106929860 TCCATTGCAC
Statistics
Matches: 78, Mismatches: 19, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 73 0.94
28 3 0.04
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (26 bp):
GGGTATTTCGATAATTTTACAATCGA
Found at i:106931646 original size:40 final size:40
Alignment explanation
Indices: 106931587--106931771 Score: 311
Period size: 40 Copynumber: 4.6 Consensus size: 40
106931577 CAGATGATAA
*
106931587 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGT-CTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTATA-T
*
106931627 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
106931667 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
106931707 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
106931747 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
106931772 AGCAAGTAGT
Statistics
Matches: 139, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:106931786 original size:80 final size:80
Alignment explanation
Indices: 106931583--106931803 Score: 315
Period size: 80 Copynumber: 2.8 Consensus size: 80
106931573 TATTCAGATG
*
106931583 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GTCTA-ATTCCGGGCTAAGTCCCAAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGT-TATA-TCCGGGCTAAGTCCCAAAGG
106931646 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* * * *
106931663 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGTTATATCCGGGCTAAGTCCCAAAGGC
106931727 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * *
106931743 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCAAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCAAAG
106931804 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 15 0.12
80 109 0.87
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCAAAGGCA
TTTGTGCGAGTTACT
Found at i:106938166 original size:93 final size:93
Alignment explanation
Indices: 106938054--106938225 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
106938044 CGCCCATAAG
* *
106938054 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106938119 ACGAGTTCGGATGCCTGGTTACATCTCA
66 ACGAGTTCGGATGCCTGGTTACATCTCA
*
106938147 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
106938212 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
106938226 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTGGTTACATCTCA
Found at i:106938222 original size:46 final size:46
Alignment explanation
Indices: 106938047--106938222 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
106938037 TGTAACCCGC
* * *
106938047 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * **
106938093 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTGGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--CAT--TCGCAT
*
106938143 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
106938186 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
106938223 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:106940813 original size:2 final size:2
Alignment explanation
Indices: 106940806--106940836 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
106940796 TCGATCGGAG
*
106940806 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106940837 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:106940961 original size:29 final size:29
Alignment explanation
Indices: 106940929--106941001 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
106940919 CTTCGAGCTC
*
106940929 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
106940958 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
106940987 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
106941002 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:106948733 original size:2 final size:2
Alignment explanation
Indices: 106948726--106948756 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
106948716 TCGATCGGAG
106948726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106948757 GAGTACGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106948881 original size:29 final size:29
Alignment explanation
Indices: 106948849--106948921 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
106948839 CTTCGAGCTC
*
106948849 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
106948878 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
106948907 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
106948922 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:106958012 original size:17 final size:18
Alignment explanation
Indices: 106957970--106958018 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
106957960 AGTTGAAAAG
106957970 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
106957989 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
106958006 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
106958019 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:106958907 original size:40 final size:40
Alignment explanation
Indices: 106958841--106959007 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
106958831 AAATTGAATG
* * *
106958841 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
106958880 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
106958920 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
106958960 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
106959000 ATATCCGG
1 ATATCCGG
106959008 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:106966650 original size:39 final size:39
Alignment explanation
Indices: 106966572--106966695 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
106966562 TATGATAACC
*
106966572 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAACCCGGATATCACAACT
*
106966612 CGCACAATTGCCTTCGGGCTTATCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
* * * * *
106966651 CGCACAATTGCCTTTGGGCTTAGCCCAGAAATCACAATT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
106966690 CGCACA
1 CGCACA
106966696 TTCATACACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
Found at i:106970024 original size:8 final size:8
Alignment explanation
Indices: 106970013--106970042 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
106970003 CCGAAATCTC
106970013 AAAATCCA
1 AAAATCCA
*
106970021 AAAATCCC
1 AAAATCCA
106970029 AAAATCCA
1 AAAATCCA
106970037 AAAATC
1 AAAATC
106970043 TCGAATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAATCCA
Found at i:106970025 original size:16 final size:16
Alignment explanation
Indices: 106970006--106970044 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
106969996 AAAGATCCCG
106970006 AAATCTCAAAATCCAA
1 AAATCTCAAAATCCAA
*
106970022 AAATCCCAAAATCCAA
1 AAATCTCAAAATCCAA
106970038 AAATCTC
1 AAATCTC
106970045 GAATTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (16 bp):
AAATCTCAAAATCCAA
Found at i:106970042 original size:24 final size:24
Alignment explanation
Indices: 106969994--106970039 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
106969984 GTGTAATGCC
* *
106969994 CCAAAGATCCCGAAATCTCAAAAT
1 CCAAAAATCCCAAAATCTCAAAAT
106970018 CCAAAAATCCCAAAATC-CAAAA
1 CCAAAAATCCCAAAATCTCAAAA
106970040 ATCTCGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.52, C:0.30, G:0.04, T:0.13
Consensus pattern (24 bp):
CCAAAAATCCCAAAATCTCAAAAT
Found at i:106971494 original size:28 final size:29
Alignment explanation
Indices: 106971383--106971497 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
106971373 GTTAGCATGA
* * *
106971383 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
106971411 ATA-GAAATGTGATTTGGGCCTAATGGGCC
1 ATATG-AATATGATTTGGGCCTAATGGGCC
*
106971440 ATAT-ACAGATGATTTGGGCCTAATGGGCC
1 ATATGA-ATATGATTTGGGCCTAATGGGCC
* *
106971469 ATATGAATATGA-TTGGGCTTAGTGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
106971497 A
1 A
106971498 GATACAGGTA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
27 1 0.01
28 26 0.35
29 47 0.63
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:106974736 original size:28 final size:28
Alignment explanation
Indices: 106974699--106974752 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
106974689 CTTTTCAAAT
106974699 TTTGATAATTTACTTGTATTTATGTAAA
1 TTTGATAATTTACTTGTATTTATGTAAA
106974727 TTTGATAATTTACTTGTATTTATGTA
1 TTTGATAATTTACTTGTATTTATGTA
106974753 TATCTGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.56
Consensus pattern (28 bp):
TTTGATAATTTACTTGTATTTATGTAAA
Found at i:106990574 original size:8 final size:8
Alignment explanation
Indices: 106990561--106990609 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
106990551 AATGCCACAA
106990561 AAATCCCG
1 AAATCCCG
**
106990569 AAATCCAA
1 AAATCCCG
*
106990577 AAATCTCG
1 AAATCCCG
**
106990585 AAATCCAA
1 AAATCCCG
106990593 AAATCCCG
1 AAATCCCG
106990601 AAATCCCG
1 AAATCCCG
106990609 A
1 A
106990610 CTTTTCTTTA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.47, C:0.31, G:0.08, T:0.14
Consensus pattern (8 bp):
AAATCCCG
Found at i:106990579 original size:16 final size:16
Alignment explanation
Indices: 106990558--106990606 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
106990548 TGTAATGCCA
106990558 CAAAAATCCCGAAATC
1 CAAAAATCCCGAAATC
*
106990574 CAAAAATCTCGAAATC
1 CAAAAATCCCGAAATC
106990590 CAAAAATCCCGAAATC
1 CAAAAATCCCGAAATC
106990606 C
1 C
106990607 CGACTTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.49, C:0.31, G:0.06, T:0.14
Consensus pattern (16 bp):
CAAAAATCCCGAAATC
Found at i:106991919 original size:27 final size:27
Alignment explanation
Indices: 106991877--106992009 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 27
106991867 GTCACTAGAT
106991877 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
*
106991903 ACAGATATATGTGGCAGAGCCACTAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
** * *
106991930 TTAGATA-ATTGTGGCATAGCCACCAGG
1 ACAGATATA-TGTGGCAGAGCCACCAGA
106991957 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
** *
106991984 TTAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
106992010 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.11
27 79 0.88
28 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:106992010 original size:54 final size:54
Alignment explanation
Indices: 106991879--106992012 Score: 234
Period size: 54 Copynumber: 2.5 Consensus size: 54
106991869 CACTAGATAC
* * *
106991879 AGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATT
1 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATT
106991932 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATT
1 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATT
106991986 AGATAATTGTGGCATAGCCACCAGGAC
1 AGATAATTGTGGCATAGCCACCAGGAC
106992013 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 4 0.05
54 73 0.95
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (54 bp):
AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATT
Found at i:106993647 original size:15 final size:15
Alignment explanation
Indices: 106993627--106993657 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
106993617 ACCTAAACCA
106993627 TTATCATGGAACATT
1 TTATCATGGAACATT
106993642 TTATCATGGAACATT
1 TTATCATGGAACATT
106993657 T
1 T
106993658 ACCTAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (15 bp):
TTATCATGGAACATT
Found at i:107000144 original size:46 final size:45
Alignment explanation
Indices: 107000088--107000263 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
107000078 TATTTGGGCA
107000088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
107000134 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
107000181 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
107000227 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107000264 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:107000243 original size:93 final size:93
Alignment explanation
Indices: 107000084--107000255 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
107000074 AGGATATTTG
* * *
107000084 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
107000149 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
107000177 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
107000242 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
107000256 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:107001677 original size:27 final size:27
Alignment explanation
Indices: 107001647--107001785 Score: 151
Period size: 27 Copynumber: 5.1 Consensus size: 27
107001637 GTGACGAAGT
107001647 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATATAGATATTGTGGCAGAGC
* *
107001674 CACCAGA-ACAGATATATGTGGCAAAGC
1 CACCAGATATAGATAT-TGTGGCAGAGC
*
107001701 CACCAGAT-TAGATAATTGTGGCATAGC
1 CACCAGATATAGAT-ATTGTGGCAGAGC
* * *
107001728 CATCA-AGACAGATATATGTGGCAGAGC
1 CACCAGATATAGATAT-TGTGGCAGAGC
*
107001755 CACCAGAT-TAGATAATTGTGGCATAGC
1 CACCAGATATAGAT-ATTGTGGCAGAGC
107001782 CACC
1 CACC
107001786 TGGACGCTTC
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
26 10 0.11
27 78 0.84
28 5 0.05
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGATATAGATATTGTGGCAGAGC
Found at i:107001719 original size:54 final size:54
Alignment explanation
Indices: 107001647--107001785 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 54
107001637 GTGACGAAGT
*
107001647 CACCAGATATAGAT-ATTGTGGCAGAGCCACC-AGAACAGATATATGTGGCAAAGC
1 CACCAGAT-TAGATAATTGTGGCATAGCCACCAAG-ACAGATATATGTGGCAAAGC
* *
107001701 CACCAGATTAGATAATTGTGGCATAGCCATCAAGACAGATATATGTGGCAGAGC
1 CACCAGATTAGATAATTGTGGCATAGCCACCAAGACAGATATATGTGGCAAAGC
107001755 CACCAGATTAGATAATTGTGGCATAGCCACC
1 CACCAGATTAGATAATTGTGGCATAGCCACC
107001786 TGGACGCTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
53 5 0.06
54 72 0.91
55 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (54 bp):
CACCAGATTAGATAATTGTGGCATAGCCACCAAGACAGATATATGTGGCAAAGC
Found at i:107004521 original size:39 final size:39
Alignment explanation
Indices: 107004411--107004587 Score: 257
Period size: 39 Copynumber: 4.5 Consensus size: 39
107004401 ACAAAGCATG
* *
107004411 CGGGACTTTAAGCCCGGATGTAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
107004452 CGGGACTTAGCCCGG-TATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
107004490 TGGGACTTAGCCCAGATATAACACCAGCACGAATGCGTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107004529 CGGGACTTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
107004568 CAGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
107004588 TATCTCACAC
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 34 0.28
39 81 0.66
40 2 0.02
41 6 0.05
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:107004579 original size:78 final size:77
Alignment explanation
Indices: 107004421--107004587 Score: 253
Period size: 77 Copynumber: 2.2 Consensus size: 77
107004411 CGGGACTTTA
* *
107004421 AGCCCGGATGTAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGTATAACACCAGCACGAATG
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGTATAACACCAGCACGAATG
** *
107004486 CCTTTGGGACTT
66 CCTTCAGGAATT
* * *
107004498 AGCCCAGATATAACACCAGCACGAATGCGTTCGGGACTTAGCTCGGATATAACACCAGCACGAAT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG-TATAACACCAGCACGAAT
107004563 GCCTTCAGGAATT
65 GCCTTCAGGAATT
107004576 AGCCCGGATATA
1 AGCCCGGATATA
107004588 TATCTCACAC
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
77 41 0.51
78 39 0.49
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (77 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGTATAACACCAGCACGAATG
CCTTCAGGAATT
Found at i:107010881 original size:39 final size:39
Alignment explanation
Indices: 107010794--107011048 Score: 368
Period size: 39 Copynumber: 6.5 Consensus size: 39
107010784 ACAAAGCATG
* * * *
107010794 CGGGACTTTAAGCCCTGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
107010834 CAGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107010873 CGGGACTTAGCCCGGGTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
107010912 CAGAACTTAGCCCGGATATAACACCAGTACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107010951 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107010990 TGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107011029 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
107011049 TATCTCACAC
Statistics
Matches: 194, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
38 19 0.10
39 170 0.88
40 5 0.03
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:107012905 original size:19 final size:20
Alignment explanation
Indices: 107012881--107012918 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
107012871 GGTACCACCA
107012881 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
107012900 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
107012919 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:107013213 original size:46 final size:45
Alignment explanation
Indices: 107013142--107013313 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
107013132 AACCAGCCCC
*
107013142 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
107013188 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * * *
107013236 T-CGCGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
107013281 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
107013314 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 59 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:107013257 original size:93 final size:93
Alignment explanation
Indices: 107013147--107013317 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
107013137 GCCCCTAAGT
* *
107013147 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
107013212 CGAGTTCGGATGCCTAGTTACATCTCGC
66 CGAGTTCGGATGCCTAGTTACATCTCGC
* * * *
107013240 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
107013305 CGAGTTCGGATGC
66 CGAGTTCGGATGC
107013318 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCGC
Found at i:107013333 original size:46 final size:45
Alignment explanation
Indices: 107013144--107013333 Score: 138
Period size: 46 Copynumber: 4.1 Consensus size: 45
107013134 CCAGCCCCTA
* * * * * *
107013144 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAACCATCT
*
107013190 AATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * * *
107013237 CGCGAACTCGGACTCAACTCAACGAGTTTGGACAT-TTGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
107013283 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
107013329 AGTGA
1 AGTGA
107013334 CATGTCACTT
Statistics
Matches: 112, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 3 0.03
46 63 0.56
47 30 0.27
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:107013771 original size:30 final size:30
Alignment explanation
Indices: 107013737--107013796 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
107013727 ATTTAATACG
107013737 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
107013767 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
107013797 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Done.