Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 349 of 770
Found at i:107014615 original size:2 final size:2
Alignment explanation
Indices: 107014608--107014634 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107014598 GGATATTACA
107014608 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
107014635 ACATAGCTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107020149 original size:39 final size:39
Alignment explanation
Indices: 107020064--107020318 Score: 352
Period size: 39 Copynumber: 6.5 Consensus size: 39
107020054 GCAAAGCATG
* * * *
107020064 CGGGACTTTAAGCCCGGATGTAATACTAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
** **
107020104 TAGGACTTAGCCCGGATATAACACCATTACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107020143 CGGGACTTAGCCC-GAGTATAACACCAGCACGAATTCCTT
1 CGGGACTTAGCCCGGA-TATAACACCAGCACGAATGCCTT
*
107020182 CGGGACTTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
107020221 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
107020260 CGGGACTTAGCCCGGATATAACACTAGCACGAATACCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
107020299 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
107020319 TATCTCACAC
Statistics
Matches: 193, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
38 19 0.10
39 168 0.87
40 6 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:107022882 original size:26 final size:26
Alignment explanation
Indices: 107022852--107022933 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
107022842 TGAAATTCCC
*
107022852 ATCATGGAACATTTACCTTACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107022878 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
107022904 ATCTTGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107022930 ATCA
1 ATCA
107022934 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:107024075 original size:8 final size:8
Alignment explanation
Indices: 107024050--107024100 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
107024040 ATGTATCGGC
*
107024050 AAAAGCAG
1 AAAAGCCG
* *
107024058 AAATGTCG
1 AAAAGCCG
107024066 AAAAGCCG
1 AAAAGCCG
107024074 AAAAGCC-
1 AAAAGCCG
107024081 AAAATGCCG
1 AAAA-GCCG
*
107024090 AAAAGCTG
1 AAAAGCCG
107024098 AAA
1 AAA
107024101 GTTTGGCTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 4 0.11
8 27 0.77
9 4 0.11
ACGTcount: A:0.53, C:0.18, G:0.22, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:107024085 original size:24 final size:24
Alignment explanation
Indices: 107024050--107024100 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
107024040 ATGTATCGGC
*
107024050 AAAAGCAGAAATGTCGAAAAGCCG
1 AAAAGCAGAAATGCCGAAAAGCCG
*
107024074 AAAAGCCA-AAATGCCGAAAAGCTG
1 AAAAG-CAGAAATGCCGAAAAGCCG
107024098 AAA
1 AAA
107024101 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.53, C:0.18, G:0.22, T:0.08
Consensus pattern (24 bp):
AAAAGCAGAAATGCCGAAAAGCCG
Found at i:107024421 original size:28 final size:29
Alignment explanation
Indices: 107024311--107024425 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
107024301 GTGAGCATGG
* * *
107024311 ATATGAATGTGA-CTGGTCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
107024339 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
107024368 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
107024397 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
107024425 A
1 A
107024426 GATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:107025545 original size:17 final size:18
Alignment explanation
Indices: 107025511--107025545 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
107025501 ATTTAAGAAG
*
107025511 GGTTTTCAATGGAAACAC
1 GGTTTTCAATGAAAACAC
107025529 GGTTTTCAAT-AAAACAC
1 GGTTTTCAATGAAAACAC
107025546 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:107027352 original size:46 final size:45
Alignment explanation
Indices: 107027302--107027474 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
107027292 TGGTTGAGCA
107027302 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AATG
* * *
107027348 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA-T--G
* * *
107027393 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-TAATG
*
107027441 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
107027475 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 58 0.55
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAATG
Found at i:107027458 original size:93 final size:93
Alignment explanation
Indices: 107027299--107027469 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
107027289 GGATGGTTGA
** *
107027299 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
107027364 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
107027392 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
107027456 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
107027470 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:107031221 original size:40 final size:40
Alignment explanation
Indices: 107031176--107031306 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 40
107031166 CGGAATATAA
107031176 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107031216 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
107031256 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107031296 CCGGATATAAT
1 CCGGATATAAT
107031307 TTTCAACATA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 76 0.99
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107039218 original size:40 final size:40
Alignment explanation
Indices: 107039173--107039340 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107039163 CGGAATATAA
107039173 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107039213 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
107039253 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
107039293 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107039333 CCGGATAT
1 CCGGATAT
107039341 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107044372 original size:71 final size:71
Alignment explanation
Indices: 107044284--107044447 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
107044274 CGATTTGTCT
*
107044284 CGTAGCTCTCTTATCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
107044349 CTTTCA
66 CTTTCA
107044355 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
107044420 CTTTCA
66 CTTTCA
107044426 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
107044448 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:107044485 original size:71 final size:70
Alignment explanation
Indices: 107044284--107044481 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
107044274 CGATTTGTCT
* * * * *
107044284 CGTAGCTCTCTTATCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
107044349 CTTTCA
65 CTTTCA
* * * *
107044355 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
107044420 CTTTCA
65 CTTTCA
* *
107044426 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
107044482 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:107045737 original size:13 final size:13
Alignment explanation
Indices: 107045719--107045747 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
107045709 CAGCTAACCT
107045719 ACATAATTAAATA
1 ACATAATTAAATA
107045732 ACATAATTAAATA
1 ACATAATTAAATA
107045745 ACA
1 ACA
107045748 CATAACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:107046004 original size:10 final size:10
Alignment explanation
Indices: 107045972--107046019 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
107045962 AAAAGGAATA
*
107045972 AGCTGAAACG
1 AGCTCAAACG
107045982 AGCT-AAATTCG
1 AGCTCAAA--CG
107045993 AGCTCAAACG
1 AGCTCAAACG
*
107046003 AGCTAAAACG
1 AGCTCAAACG
107046013 AGCTCAA
1 AGCTCAA
107046020 GTGAGCTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 3 0.09
10 21 0.64
11 6 0.18
12 3 0.09
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (10 bp):
AGCTCAAACG
Found at i:107046026 original size:20 final size:21
Alignment explanation
Indices: 107045972--107046019 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
107045962 AAAAGGAATA
* *
107045972 AGCTGAAACGAGCTAAATTCG
1 AGCTCAAACGAGCTAAATACG
107045993 AGCTCAAACGAGCTAAA-ACG
1 AGCTCAAACGAGCTAAATACG
107046013 AGCTCAA
1 AGCTCAA
107046020 GTGAGCTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (21 bp):
AGCTCAAACGAGCTAAATACG
Found at i:107046775 original size:29 final size:28
Alignment explanation
Indices: 107046712--107046809 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 28
107046702 TTCACATACC
* * * *
107046712 TGTATCTGGCCCATTAAGCCCAATCATA
1 TGTATATGGCCCATTAGGCCAAATCACA
*
107046740 T-TCATATGGCCCATTAGGCTCAAATCACC
1 TGT-ATATGGCCCATTAGGC-CAAATCACA
107046769 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGG-CCAAATCACA
*
107046798 TTTATATGGCCC
1 TGTATATGGCCC
107046810 GTTAAGTCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 15 0.25
29 41 0.69
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (28 bp):
TGTATATGGCCCATTAGGCCAAATCACA
Found at i:107048117 original size:19 final size:19
Alignment explanation
Indices: 107048087--107048132 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
107048077 CAAATTAGCT
107048087 CTCATGTAGCTC-CACACCAG
1 CTCAT-TAGCTCGCA-ACCAG
*
107048107 CTCATTAGCTCGGAACCAG
1 CTCATTAGCTCGCAACCAG
107048126 CTCATTA
1 CTCATTA
107048133 TCAGCTCGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (19 bp):
CTCATTAGCTCGCAACCAG
Found at i:107049852 original size:16 final size:17
Alignment explanation
Indices: 107049824--107049859 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
107049814 ACAAAGAGAG
107049824 TTTGGGATTTCGGGATT
1 TTTGGGATTTCGGGATT
107049841 TTTGGG-TTTCGGGATT
1 TTTGGGATTTCGGGATT
107049857 TTT
1 TTT
107049860 AGGGCGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.08, C:0.06, G:0.33, T:0.53
Consensus pattern (17 bp):
TTTGGGATTTCGGGATT
Found at i:107050447 original size:15 final size:15
Alignment explanation
Indices: 107050418--107050475 Score: 66
Period size: 14 Copynumber: 4.0 Consensus size: 15
107050408 CACATCACTA
*
107050418 AAACCAT-AAACCCT
1 AAACCATAAAATCCT
*
107050432 AAACAATAAAATCCT
1 AAACCATAAAATCCT
* *
107050447 AAACCTTAAACT-CT
1 AAACCATAAAATCCT
107050461 AAACCATAAAATCCT
1 AAACCATAAAATCCT
107050476 TTTCTTTTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
14 18 0.51
15 17 0.49
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCATAAAATCCT
Found at i:107050449 original size:22 final size:22
Alignment explanation
Indices: 107050416--107050470 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
107050406 TCCACATCAC
107050416 TAAAACCATAAACCCTAAACAA
1 TAAAACCATAAACCCTAAACAA
* **
107050438 TAAAATCC-TAAACCTTAAACTC
1 TAAAA-CCATAAACCCTAAACAA
107050460 T-AAACCATAAA
1 TAAAACCATAAA
107050471 ATCCTTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 2 0.07
21 7 0.25
22 17 0.61
23 2 0.07
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAAACCATAAACCCTAAACAA
Found at i:107050462 original size:29 final size:29
Alignment explanation
Indices: 107050418--107050475 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
107050408 CACATCACTA
107050418 AAACCATAAACCCTAAACAATAAAATCCT
1 AAACCATAAACCCTAAACAATAAAATCCT
* * *
107050447 AAACCTTAAACTCTAAACCATAAAATCCT
1 AAACCATAAACCCTAAACAATAAAATCCT
107050476 TTTCTTTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (29 bp):
AAACCATAAACCCTAAACAATAAAATCCT
Found at i:107051782 original size:849 final size:845
Alignment explanation
Indices: 107050454--107053780 Score: 3074
Period size: 849 Copynumber: 3.9 Consensus size: 845
107050444 CCTAAACCTT
* * * ** *
107050454 AAACTCTAAACCATAAAATCCTTTTCTTTTTCATTCTTTTAATTGAAAAATCTAATTTGTTTTGT
1 AAACCCTAAACCCTAAAACCCTTTTCTTTTTCATTCTTTTAA-CAAAAAATCTAATTTGTTTTTT
* * * * * * *
107050519 TCTTTTCTTTAGAACTCAATTTGACATCTTCTTTTCATCTAAGAATGGTCCAATTCATCTTAATT
65 TCTTTTTTTTAG-ATTCAA-TTCACATCTTCTTTTCATCCAAGAACGGTTCAAATCATCTTAATT
* **
107050584 TACTTGGTTCTTCATGTTCTTTGT-TCGTCGAGTCTTCCTTTAATCTTTCTTGTGATTTCATTCA
128 TACTTGATTCTTCATGTTCTTTGTGT--TCGAACCTTCCTTTAATCTTTCTTGTGATTTCATTCA
* * *
107050648 GTTTTGATCTTTATTCTTCAAATCTGTTCAACCGTTTTTTTTCACTTAATTGGCAGCCTTGAACC
191 GTTTTGATCTTTATTCTTCAAATCTGTCCAACCGTTTGTTTTCACTTAATTGGCAGCCTTGACCC
* * * *
107050713 CTTTCAATTTCTTACAAAACAAGTGCTTCCTTAATCAACTTGGTCTCTTCCAAGAACCCTAATTT
256 CTTTGAATTTCATACAAAACAAGTGCTTCCTTAATCAACTTAGTCTCCTCCAAGAACCCTAATTT
* *
107050778 TAATTCAGA-TTCCTTGTTCTTTTATTACTTGATTTGTGTTGCAGCCCTTTTAATTCTAACTTGG
321 TGATTCA-ATTTCCTTGTTCTTTTATTACTTGATTTATGTTGCAGCCCTTTTAATTCTAACTTGG
* * * *
107050842 ATTGTTTGAGTTTTTA-GTGGGGTTGAACTCTAAGATTTCTTTCGTTCATCTAGAGTCCAAAGTA
385 ATTGTTTGAG-TTTCAGGTGGGGTCGAACTCTAAGATTCCTTTCGTTCATCTAGAGCCCAAAGTA
* * *
107050906 AAACCCTCAACTTGGAAAAACTTTTGATCCTGTACCACATGTGTCACTTCATAAATGACCGATTC
449 AAA-TCTCAACTTGGAAAAACTTTTGATCCTATACCACATGCGTCACTTCATAAATGACCGATTC
* *
107050971 AAATTTAATAACTAAAGAACATCGAATAAGTTCAATTCATTGTAATAGAAAAAGAACAAGTAAAT
513 AAATTTAATAACTAAAGAACATCGAATAAATTCAATTCATTGTAATAGAAAAAGAACAAGTAAAC
* * *
107051036 TGAGCAAGAATAAGGATCCT-AAAGGAGATCAAGTCAGCTCATGAAGAGGACTTGTTATTGATAA
578 TGAGCAAGAACAAGGATCTTGAAA-GAGATCAAGTCAGTTCATGAAGAGGACTTGTTATTGATAA
* * * *
107051100 ATTCAAATCAAATTAAGGATGTCAAGAAGTGCAAACAATCAATTAAGAAAATATTTGAATAATTG
642 ATT-AAATCGAATTAAGGATGCCAAGAAG-GGAAACAATCAATTAAGAAAAGATTTGAATAATTG
* * * * *
107051165 ATAAGGACACGTGCGAAAAAGGATCCTAAGGTTGTCCAAGTCG-TGAATTTGTTAGGCTCTAGAC
705 ATAAGGACACATGCGAAATAGGATCCCAAGTTTGTCCAAGTCGTTGAATTT-TTAGGCTCTAGAT
* * * *
107051229 GACAGATGAAACTTGGATTAAACTAATCCTGAGATTGCAACAATCCAAGGCTTCTTTGGAAATCT
769 GA-AGATGAAACTTGGATT-GACTAATCTTGAGAATGCAACAATCCAAGGCTTCTTTGGACATCT
107051294 TCACGCT-A-CT-A
832 TCACGCTAACCTAA
* * * *
107051305 AAACCCGAAACCCTAAAACCCTTTTCTTTTTCATCCTTTTAACCAAAAATCTAATCTGTTTCCTT
1 AAACCCTAAACCCTAAAACCCTTTTCTTTTTCATTCTTTTAACAAAAAATCTAATTTGTTT--TT
* * *
107051370 TTTTTTTTTTTAGATTCAATTCATCATCTTCTTTTCATTCAAGAACGGTTAAAATCATCTTAATT
64 TTCTTTTTTTTAGATTCAATTCA-CATCTTCTTTTCATCCAAGAACGGTTCAAATCATCTTAATT
107051435 TACTTGATTCTTCATGTTCTTTGTGTTCGAACCTTCCTTTAATCTTT-TTGTGATTTCATTCAGT
128 TACTTGATTCTTCATGTTCTTTGTGTTCGAACCTTCCTTTAATCTTTCTTGTGATTTCATTCAGT
* * * * *
107051499 TTTGATCTTTATTCTTCAAATCTGTCTAACCGTTTGATTTCACTTAATTCGAAGCCTTTACCCCT
193 TTTGATCTTTATTCTTCAAATCTGTCCAACCGTTTGTTTTCACTTAATTGGCAGCCTTGACCCCT
* * * * **
107051564 TTAAATTTCATACAGAATAAGTGCTTCCCTAATTGACTTAGTCTCCTCCAAGAACCCTAATTTTG
258 TTGAATTTCATACAAAACAAGTGCTTCCTTAATCAACTTAGTCTCCTCCAAGAACCCTAATTTTG
* * * *
107051629 ATCCAATTTCCTTGTTCTTTTATTACTTTATTT-TTTTGTAGCCCTTTTTAATTCTAACTTGGAT
323 ATTCAATTTCCTTGTTCTTTTATTACTTGATTTATGTTGCAGCCC-TTTTAATTCTAACTTGGAT
* * *
107051693 TGTTTGAGTTTCAGGTGGGCTCGAGC-CTAAGATTCCTTTCGTTCCTTCTAGAGCCCAAAGTAAA
387 TGTTTGAGTTTCAGGTGGGGTCGAACTCTAAGATTCCTTTCGTT-CATCTAGAGCCCAAAGTAAA
* * * * * ** * *
107051757 ATTTGTAACTAGGAAAAATTTTTGATTCTATACCACATGCAACACTTCATAAATGACTGATTCAT
451 ATCT-CAACTTGGAAAAACTTTTGATCCTATACCACATGCGTCACTTCATAAATGACCGATTCAA
* * * * * * * *
107051822 ATTTAATAACTAAAGAAAATC----AAGTTCTATTCTTTTTATTTGAAAAATAGA-AAGTAAACT
515 ATTTAATAACTAAAGAACATCGAATAAATTCAATTCATTGTAATAGAAAAAGA-ACAAGTAAACT
* * * * *
107051882 AAGCAAAAATAAGTATCTTGAAAGAGATCAAATCAGTTCATG-A-AGG----G--A--G------
579 GAGCAAGAACAAGGATCTTGAAAGAGATCAAGTCAGTTCATGAAGAGGACTTGTTATTGATAAAT
*
107051931 --AA--GAATTAAGGATGCCAAGAAGGGAAAACAATCGATTAAGAAAAGATTTGAATAATTGATA
644 TAAATCGAATTAAGGATGCCAAGAAGGG-AAACAATCAATTAAGAAAAGATTTGAATAATTGATA
* * * * **
107051992 AGGACGCATGTGGAATAGGATCCCAAATTTGTCCACA-TCACAGTTCTATTCTTTA-GCTCTAGA
708 AGGACACATGCGAAATAGGATCCCAAGTTTGTCCA-AGT--C-GTTGAATT-TTTAGGCTCTAGA
* * * * *
107052055 TGTAAGATGAAACTTGGATTTTGACTAATCTTAATAATGCAACAATCTAAGACTCCTTAT-GACA
768 TG-AAGATGAAACTTGGA--TTGACTAATCTTGAGAATGCAACAATCCAAGGCTTCTT-TGGACA
*
107052119 TCTTCACACCACTAAAACCCTAAA
829 TCTT--CA-CGCT--AA-CCT-AA
* * * *** *
107052143 CCTTAAACCCTAAACCCTAAACCCCAAAATATTTTCTTTTTTATTCTTGTAATTGAAAACCTTAA
1 ----AAACCCTAAACCCTAAAACCC------TTTTCTTTTTCATTCTTTTAACAAAAAATC-TAA
*
107052208 -TTGTTTTGTTTCTTTTGTTTAGATCTCAATTCGACATCTTCTTTTCATCCAAGAACGGTTCAAA
55 TTTGTTTT-TTTCTTTTTTTTAGAT-TCAATTC-ACATCTTCTTTTCATCCAAGAACGGTTCAAA
* *** *
107052272 TCATCTTAATTTACTTGATTTTTCATGTTCTTTGTTGTTCGGGTCTTCCTTTAACCTTTCTTGTG
117 TCATCTTAATTTACTTGATTCTTCATGTTCTTTG-TGTTCGAACCTTCCTTTAATCTTTCTTGTG
* * * *
107052337 ATTTCAATC-GATTTTGATCTTTATTCTTCAAATCTATCCAATCGTTTGTTTTCACTTAATTGGT
181 ATTTCATTCAG-TTTTGATCTTTATTCTTCAAATCTGTCCAACCGTTTGTTTTCACTTAATTGGC
* *
107052401 AGCCTTGACCCCTTTGAATTTCATACAAAACAAGTGCCT-CTTGAAT-AACCTAGTCTCCTCCAA
245 AGCCTTGACCCCTTTGAATTTCATACAAAACAAGTGCTTCCTT-AATCAACTTAGTCTCCTCCAA
* ** * * * *
107052464 GAACCCTAATTTTTATTCGTTTTCCTTATTCTTTTGTTACTTGATTTATGTTGCAGCTCTGTTAA
309 GAACCCTAATTTTGATTCAATTTCCTTGTTCTTTTATTACTTGATTTATGTTGCAGCCCTTTTAA
* * * *
107052529 TTCTAACTTGGATTGTTTGAGTTTCAGGTGGGGTTGAACTCTAACATTCCTTTCTTTCATATAGA
374 TTCTAACTTGGATTGTTTGAGTTTCAGGTGGGGTCGAACTCTAAGATTCCTTTCGTTCATCTAGA
** * * *
107052594 GCATAAAGTAAAATC-CAACACTTGGAAAAACTTTTGATCCTATACTACATGAGTCATTTCATAA
439 GCCCAAAGTAAAATCTC-A-ACTTGGAAAAACTTTTGATCCTATACCACATGCGTCACTTCATAA
* * **
107052658 ATGACCAATTCAAATTTAATAACTAAAGAACATTGAATAAATTCAATTCATTGTGGTAG-AAAAG
502 ATGACCGATTCAAATTTAATAACTAAAGAACATCGAATAAATTCAATTCATTGTAATAGAAAAAG
* * * * * *
107052722 AACAAGTAAACCGATCAAGAACAAGGATCATGAATGAGATCAAGTCGGTCCATGAAGAGGACTTG
567 AACAAGTAAACTGAGCAAGAACAAGGATCTTGAAAGAGATCAAGTCAGTTCATGAAGAGGACTTG
* * * *
107052787 TTCTTGATAAATTACATTCGAATTAAGGATGCCAAGAAGGGAAAAAAT-GATTAAGAAAAGATTT
632 TTATTGATAAATTA-AATCGAATTAAGGATGCCAAGAAGGGAAACAATCAATTAAGAAAAGATTT
* * * * * * *
107052851 TAATAATTGATCAGGACAAATTCGAAATAGGATCCCAAGTTTCTCCAAGTAGTTGATTTTTTCTA
696 GAATAATTGATAAGGACACATGCGAAATAGGATCCCAAGTTTGTCCAAGTCGTTGA-ATTTT-TA
* * * *
107052916 GGGCTCTAGATG-A-ATG-GA-TT---TTGACTAATCTTGTGAAGGAAACAATCCAAGGCTTCTT
759 -GGCTCTAGATGAAGATGAAACTTGGATTGACTAATCTTGAGAATGCAACAATCCAAGGCTTCTT
* * *
107052974 AGGACATCTTTATGCCATTAAAACCTTGAA
823 TGGACATCTTCACG-C--T--AACC-T-AA
* *
107053004 CCCTACACCCTATATCCCTAAGCCTTAAACCTTAAACTCTAAATCATAAAACCCTTTAATTTTTC
1 ----AAACCCTA-AACCCT-A-----AAACC-----CT-T---T--T------CTTT--TT---C
* * **
107053069 ATTCTTTTCACAAAAAATCTAATTTGTTTTTTT-TTTTTTTT-GATATTAATTTGGCATCTTCTT
33 ATTCTTTTAACAAAAAATCTAATTTGTTTTTTTCTTTTTTTTAGAT-TCAA-TTCACATCTTCTT
** * * * * **
107053132 TTCATCCAAGAACAATTCAAATCATCTTAATTTACTTGATTCTTAATTATTCTTTATTTTTTACA
96 TTCATCCAAGAACGGTTCAAATCATCTTAATTTACTTGATTCTTCA-TGTTCTTTGTGTTCGA-A
* * *
107053197 CCATCCTTTAATCTTTCTTGTGATTTCATT-AGGTTTTGAACTTTATTCTTCAAATTTGTCCAAC
159 CCTTCCTTTAATCTTTCTTGTGATTTCATTCA-GTTTTGATCTTTATTCTTCAAATCTGTCCAAC
* * * * * *
107053261 CATTTGTTTTCACCTAATTAGCAGTCTTG-CCCCTCTGAATTTC-T-CAAAACAAGTGTTTCCTT
223 CGTTTGTTTTCACTTAATTGGCAGCCTTGACCCCTTTGAATTTCATACAAAACAAGTGCTTCCTT
* * * * * * * *
107053323 AATCAACTTGGACTCCTCTAAGAACCCTAATTTTGATTCGATTTACGTT-TTCATTTCTTATTTG
288 AATCAACTTAGTCTCCTCCAAGAACCCTAATTTTGATTCAATTT-CCTTGTTCTTTTATTACTTG
* * * *
107053387 ATTTTATGTTGTAGCCCTTTTAATTCTAATTTGGATTGTTTGAGTTTCACGTGGGGTCGAACTGT
352 A-TTTATGTTGCAGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTCAGGTGGGGTCGAACTCT
* * ** *
107053452 AATATTCCTTTCATTCATCTAGAGCCCAAAGTCGAATCTACAACTTGGAAAAACTTTTGATCCAA
416 AAGATTCCTTTCGTTCATCTAGAGCCCAAAGTAAAATCT-CAACTTGGAAAAACTTTTGATCCTA
* * * * *
107053517 TACCGCATGCGCCACTTCATAAATGACCGATTCAGATTTAATAACTAAATAACATCAAATAAATT
480 TACCACATGCGTCACTTCATAAATGACCGATTCAAATTTAATAACTAAAGAACATCGAATAAATT
* * *
107053582 CAATTCATTGTGATAGAAAAAGAACAAGTAAACTGAGAAAGAGCAAGGATCTTGAAAGAGATCAA
545 CAATTCATTGTAATAGAAAAAGAACAAGTAAACTGAGCAAGAACAAGGATCTTGAAAGAGATCAA
* * * * *** * * *
107053647 GTCAATTCATGAATAGGATTTCTTCCGGATAGATTCCAATCGAATTAAAGATGCCAAGAAGGGAA
610 GTCAGTTCATGAAGAGGACTTGTTATTGATAAATT-AAATCGAATTAAGGATGCCAAGAAGGGAA
** * * *
107053712 A-AATCAATTAAGAAAAGATTTGAATGGTTGATAAGGGCGA-ATGTGGAAGT-GG-TCCCAAGTT
674 ACAATCAATTAAGAAAAGATTTGAATAATTGATAAGGAC-ACATG-CGAAATAGGATCCCAAGTT
107053773 TGTCCAAG
737 TGTCCAAG
107053781 CCCAAATTTG
Statistics
Matches: 2012, Mismatches: 328, Indels: 242
0.78 0.13 0.09
Matches are distributed among these distances:
823 1 0.00
824 80 0.04
825 1 0.00
826 3 0.00
827 24 0.01
828 43 0.02
829 4 0.00
830 2 0.00
831 3 0.00
834 1 0.00
835 1 0.00
836 2 0.00
837 1 0.00
838 1 0.00
839 1 0.00
842 19 0.01
843 3 0.00
844 1 0.00
845 62 0.03
846 5 0.00
847 14 0.01
848 128 0.06
849 490 0.24
850 158 0.08
851 101 0.05
852 58 0.03
853 15 0.01
854 3 0.00
858 1 0.00
859 2 0.00
860 2 0.00
861 56 0.03
862 6 0.00
863 1 0.00
866 2 0.00
867 2 0.00
868 13 0.01
869 5 0.00
870 1 0.00
871 67 0.03
872 6 0.00
873 24 0.01
879 19 0.01
880 51 0.03
881 276 0.14
882 220 0.11
883 13 0.01
884 20 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (845 bp):
AAACCCTAAACCCTAAAACCCTTTTCTTTTTCATTCTTTTAACAAAAAATCTAATTTGTTTTTTT
CTTTTTTTTAGATTCAATTCACATCTTCTTTTCATCCAAGAACGGTTCAAATCATCTTAATTTAC
TTGATTCTTCATGTTCTTTGTGTTCGAACCTTCCTTTAATCTTTCTTGTGATTTCATTCAGTTTT
GATCTTTATTCTTCAAATCTGTCCAACCGTTTGTTTTCACTTAATTGGCAGCCTTGACCCCTTTG
AATTTCATACAAAACAAGTGCTTCCTTAATCAACTTAGTCTCCTCCAAGAACCCTAATTTTGATT
CAATTTCCTTGTTCTTTTATTACTTGATTTATGTTGCAGCCCTTTTAATTCTAACTTGGATTGTT
TGAGTTTCAGGTGGGGTCGAACTCTAAGATTCCTTTCGTTCATCTAGAGCCCAAAGTAAAATCTC
AACTTGGAAAAACTTTTGATCCTATACCACATGCGTCACTTCATAAATGACCGATTCAAATTTAA
TAACTAAAGAACATCGAATAAATTCAATTCATTGTAATAGAAAAAGAACAAGTAAACTGAGCAAG
AACAAGGATCTTGAAAGAGATCAAGTCAGTTCATGAAGAGGACTTGTTATTGATAAATTAAATCG
AATTAAGGATGCCAAGAAGGGAAACAATCAATTAAGAAAAGATTTGAATAATTGATAAGGACACA
TGCGAAATAGGATCCCAAGTTTGTCCAAGTCGTTGAATTTTTAGGCTCTAGATGAAGATGAAACT
TGGATTGACTAATCTTGAGAATGCAACAATCCAAGGCTTCTTTGGACATCTTCACGCTAACCTAA
Found at i:107052149 original size:7 final size:7
Alignment explanation
Indices: 107052133--107052166 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
107052123 CACACCACTA
107052133 AAACCCT
1 AAACCCT
*
107052140 AAACCTT
1 AAACCCT
107052147 AAACCCT
1 AAACCCT
107052154 AAACCCT
1 AAACCCT
107052161 AAACCC
1 AAACCC
107052167 CAAAATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:107063521 original size:8 final size:8
Alignment explanation
Indices: 107063508--107063532 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
107063498 GGGTTTATGA
107063508 TATGATTG
1 TATGATTG
107063516 TATGATTG
1 TATGATTG
107063524 TATGATTG
1 TATGATTG
107063532 T
1 T
107063533 GTGAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (8 bp):
TATGATTG
Found at i:107067818 original size:43 final size:41
Alignment explanation
Indices: 107067767--107067934 Score: 176
Period size: 43 Copynumber: 4.0 Consensus size: 41
107067757 AGAATCTGAT
* * *
107067767 ATTTGATTTCATGTATGAGCACGTCTGGGACATTGGCATCG
1 ATTTGATTTCATGTAAGACCACTTCTGGGACATTGGCATCG
* *
107067808 ACTTATGATTTACATGTAAGACCATTTCTGGGACATAGGCATCG
1 A-TT-TGATTT-CATGTAAGACCACTTCTGGGACATTGGCATCG
* *
107067852 TATTTGATTTCGTGTAAGACC-CTATCTGGGACAGTGGCATCG
1 -ATTTGATTTCATGTAAGACCACT-TCTGGGACATTGGCATCG
* * *
107067894 ATATTTGATTACGTGTAAGACCACTTTTGGGACATTGGCAT
1 --ATTTGATTTCATGTAAGACCACTTCTGGGACATTGGCAT
107067935 TGTATGAGCT
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
41 2 0.02
42 28 0.26
43 46 0.43
44 31 0.29
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
ATTTGATTTCATGTAAGACCACTTCTGGGACATTGGCATCG
Found at i:107069982 original size:48 final size:48
Alignment explanation
Indices: 107069907--107070517 Score: 636
Period size: 48 Copynumber: 12.8 Consensus size: 48
107069897 AGGATAAATT
* * * * * * * *
107069907 GCCGATGCCATCTCCTAGACATAGTCTTACATTGGTTCACAT-GTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GAG
* * * *
107069955 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-AGT-CTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TAAT-GAG
* * * *
107070003 GCCGATGCCATGTCCCAGACATGGCCTTACACTAGCTCT-AGT-CTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TAAT-GAG
* * * *
107070051 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTAATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAG
* *
107070099 GCCGATGCCATG-CCC-GAACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAG-ACATGGTCTTACACTAGCTCTCATAATGAG
* * * *
107070146 GCCAATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGA-G
* * * *
107070194 GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCACACAT-ATCA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAG
* * *
107070240 ACATCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAATGTG
1 GC--CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAG
** ** * *
107070290 GCTAATGCCATGTCCCAGACATGGTCTTACACCGGCCCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAG
*
107070338 CCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGA-G
*
107070386 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGA-G
*
107070434 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGA-G
*
107070482 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
107070518 GCACATATCA
Statistics
Matches: 495, Mismatches: 55, Indels: 26
0.86 0.10 0.05
Matches are distributed among these distances:
46 2 0.00
47 44 0.09
48 443 0.89
49 5 0.01
50 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAG
Found at i:107078240 original size:6 final size:6
Alignment explanation
Indices: 107078221--107078308 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
107078211 AAGAAACATT
* *
107078221 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
107078270 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
107078309 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.08
6 53 0.80
7 5 0.08
8 3 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:107078271 original size:31 final size:31
Alignment explanation
Indices: 107078230--107078308 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
107078220 TATCAGAACT
* *
107078230 AGAATTAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
107078261 AGAATCAGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
107078292 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
107078309 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:107078855 original size:27 final size:27
Alignment explanation
Indices: 107078825--107079075 Score: 278
Period size: 27 Copynumber: 9.3 Consensus size: 27
107078815 GGGGTAAAAT
* *
107078825 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
107078852 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
107078879 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
107078906 GAT-ATTTCTACCCTAAAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
107078933 GGTAATTCTA-CCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
107078959 AGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
107078986 GAT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
107079013 GGT-ATTTCTACCCTACAATGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
107079040 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
107079067 GATAATTTT
1 GGTAATTTT
107079076 GTAAATCAAG
Statistics
Matches: 192, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 29 0.15
27 156 0.81
28 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:107079060 original size:134 final size:134
Alignment explanation
Indices: 107078826--107079073 Score: 388
Period size: 134 Copynumber: 1.9 Consensus size: 134
107078816 GGGTAAAATG
* *
107078826 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTATC
1 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* *
107078891 CTACAGGGGTATTTCGATATTTCTACCCTAAAAGGGTATTTCGGTAATTCTACCTACAAGGGTAT
66 CTACAAGGGTATTTCGATATTTCTACCCTAAAAGGGTATTTCGATAATTCTACCTACAAGGGTAT
107078956 TTTA
131 TTTA
* * * * *
107078960 GTAATTTTACCCTACAAGGGTATTTCGATATTTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* * *
107079025 CTACAATGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATT
66 CTACAAGGGTATTTCGATATTTCTACCCTAAAAGGGTATTTCGATAATT
107079074 TTGTAAATCA
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
134 102 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (134 bp):
GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCGATATTTCTACCCTAAAAGGGTATTTCGATAATTCTACCTACAAGGGTAT
TTTA
Found at i:107079085 original size:27 final size:27
Alignment explanation
Indices: 107079055--107079776 Score: 663
Period size: 27 Copynumber: 26.7 Consensus size: 27
107079045 TTCTACCCTA
* * * *
107079055 CAAGGGTATTTCGATAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
**** * * *
107079082 CAAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * **
107079109 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** ***
107079136 CGAGGGTATTTCAATAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** * * *
107079163 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
107079190 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
107079217 TAGGGGTGTTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
107079244 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
107079271 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
107079298 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
107079325 CAAAGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
107079352 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
107079379 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
107079406 CAAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
107079433 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
107079460 CAAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* **
107079487 CAGGGGTATTTTGGTAATTTGGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
107079514 TAGGGGTGTTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
107079541 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAAGGGTATTTTGGTAATTTTATAAAC
107079568 C-AGAGGTATTTTGGTAATTTTATAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
107079595 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * **
107079622 CAAAGGTATTTTAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
107079649 CAGGGGTATTTTGGTAATATTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
107079676 CAAGGGTATTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
107079703 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
107079730 CAAGGGTATTTTAATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
107079757 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
107079777 GGTAAACTAA
Statistics
Matches: 575, Mismatches: 118, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 1 0.00
27 572 0.99
28 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:107079783 original size:27 final size:27
Alignment explanation
Indices: 107079166--107079776 Score: 691
Period size: 27 Copynumber: 22.6 Consensus size: 27
107079156 TATAGGTCGA
** * * *
107079166 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079193 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079220 GGGTGTTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079247 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079274 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079301 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079328 AGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079355 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079382 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
107079409 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079436 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
** * * *
107079463 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
** *
107079490 GGGTATTTTGGTAATTTGGTAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079517 GGGTGTTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079544 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079571 AGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079598 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * **
107079625 AGGTATTTTAGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
107079652 GGGTATTTTGGTAATATTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079679 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
107079706 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
** *
107079733 GGGTATTTTAATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
107079760 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
107079777 GGTAAACTAA
Statistics
Matches: 493, Mismatches: 91, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 493 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:107079783 original size:54 final size:54
Alignment explanation
Indices: 107079166--107079776 Score: 783
Period size: 54 Copynumber: 11.3 Consensus size: 54
107079156 TATAGGTCGA
** * * * * *
107079166 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * * * *
107079220 GGGTGTTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
107079274 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
107079328 AGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
107079382 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* ** * *
107079436 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
** * * * *
107079490 GGGTATTTTGGTAATTTGGTAAACTAGGGGTGTTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * * * *
107079544 GGGTATTTTGGTAATTTTACAAGCC-AGAGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAAG-GGTATTTTGGTAATTTTACAAACCAG
* * * * *
107079598 GGGTATTTTAGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
107079652 GGGTATTTTGGTAATATTGTAAACCAAGGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* **
107079706 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
107079760 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
107079777 GGTAAACTAA
Statistics
Matches: 482, Mismatches: 73, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.00
54 480 1.00
55 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:107081730 original size:6 final size:6
Alignment explanation
Indices: 107081711--107081798 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
107081701 AAGAAACATT
* *
107081711 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
107081760 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
107081799 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:107081761 original size:31 final size:31
Alignment explanation
Indices: 107081720--107081798 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
107081710 TATCAGAACT
* *
107081720 AGAATTAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
107081751 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
107081782 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
107081799 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:107082344 original size:27 final size:27
Alignment explanation
Indices: 107082314--107082511 Score: 168
Period size: 27 Copynumber: 7.3 Consensus size: 27
107082304 GGGGTAAAAT
* *
107082314 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
107082341 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
107082368 AGTAATTTTACCCTAC-AGAGGTATTTC
1 GGTAATTTTACCCTACAAG-GGTATTTC
* *
107082395 GAT-ATTTCTACCCTACAACGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * ** * * *
107082422 GATAATTCTACTGTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
107082449 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
107082476 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
107082503 GATAATTTT
1 GGTAATTTT
107082512 GTAAATCGAG
Statistics
Matches: 135, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
26 8 0.06
27 119 0.88
28 8 0.06
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:107082361 original size:54 final size:54
Alignment explanation
Indices: 107082303--107082411 Score: 130
Period size: 54 Copynumber: 2.0 Consensus size: 54
107082293 TTAACACCCT
* *
107082303 AGGGGTAAAATGGTAATTTTACCCCACA-AGGGTATCTCGGTAATTCTACCCTAC
1 AGGGGTAAAATAGTAATTTTACCCCACAGA-GGTATCTCGATAATTCTACCCTAC
*** * * *
107082357 AGGGGTATTTTAGTAATTTTACCCTACAGAGGTATTTCGATATTTCTACCCTAC
1 AGGGGTAAAATAGTAATTTTACCCCACAGAGGTATCTCGATAATTCTACCCTAC
107082411 A
1 A
107082412 ACGGTATTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 45 0.98
55 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (54 bp):
AGGGGTAAAATAGTAATTTTACCCCACAGAGGTATCTCGATAATTCTACCCTAC
Found at i:107082428 original size:54 final size:54
Alignment explanation
Indices: 107082316--107082509 Score: 189
Period size: 54 Copynumber: 3.6 Consensus size: 54
107082306 GGTAAAATGG
* * * *
107082316 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT-TA
1 TAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* **
107082369 GTAATTTTACCCTAC-AGAGGTATTTCGATATTTCTACCCTACAACGGTATTTCGA
1 -TAATTTTACCCTACAAG-GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* ** * * * *
107082424 TAATTCTACTGTATAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGA
*
107082478 T-ATTTCTACCCTACAAGGGTATTTTGATAATT
1 TAATTT-TACCCTACAAGGGTATTTCGATAATT
107082510 TTGTAAATCG
Statistics
Matches: 111, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
53 6 0.05
54 102 0.92
55 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (54 bp):
TAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
Found at i:107082461 original size:81 final size:81
Alignment explanation
Indices: 107082318--107082509 Score: 278
Period size: 81 Copynumber: 2.4 Consensus size: 81
107082308 TAAAATGGTA
* * * *
107082318 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
107082382 ACAGAGGTATTTCGAT
66 ACAGAGGTATTTCGAT
* ** *
107082398 ATTTCTACCCTACAACGGTATTTCGATAATTCTACTGTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
* *
107082463 ACAGGGGTATTTCGGT
66 ACAGAGGTATTTCGAT
*
107082479 ATTTCTACCCTACAAGGGTATTTTGATAATT
1 ATTTCTACCCTACAAGGGTATTTCGATAATT
107082510 TTGTAAATCG
Statistics
Matches: 99, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 4 0.04
81 95 0.96
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGAGGTATTTCGAT
Found at i:107082523 original size:27 final size:27
Alignment explanation
Indices: 107082494--107082942 Score: 295
Period size: 27 Copynumber: 16.6 Consensus size: 27
107082484 TACCCTACAA
*
107082494 GGGTATTTTGATAATTTTGTAAATCGA-
1 GGGTATTTTGATAATTTTATAAA-CGAG
**** * *
107082521 GGGTAAAACGATAATTCTGTAAATC-AG
1 GGGTATTTTGATAATTTTATAAA-CGAG
* * * *
107082548 GGGTACTTTGGTAATTTTACAAGTCGA-
1 GGGTATTTTGATAATTTTATAA-ACGAG
** **
107082575 GGGTATTTCAATAATTTTATAGGTCGA-
1 GGGTATTTTGATAATTTTATA-AACGAG
* * *
107082602 GGGTA-TTTCAGTAATTTCACAAATC-AG
1 GGGTATTTTGA-TAATTTTATAAA-CGAG
* *
107082629 GGGTATTTTGGTAATTTTACAAACGAG
1 GGGTATTTTGATAATTTTATAAACGAG
* *
107082656 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTATAAACGAG
* * * *
107082683 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGATAATTTTATAAACGAG
* * *
107082710 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGATAATTTTATAAACGAG
* *
107082737 GGGTATTTT-ACTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTATAAACGAG
* * *
107082764 GGGTATTTTGGTAATTTTATAAACAAT
1 GGGTATTTTGATAATTTTATAAACGAG
* *
107082791 GGGTATTTT-AGTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTATAAACGAG
* * * *
107082818 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGATAATTTTATAAACGAG
* * *
107082845 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTATAAACGAG
* * * *
107082872 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGATAATTTTATAAACGAG
* * *
107082899 AGGTATTTT-AGTAATTTTACAAACTAG
1 GGGTATTTTGA-TAATTTTATAAACGAG
*
107082926 GGGTATTTTGGTAATTT
1 GGGTATTTTGATAATTT
107082943 GGTAAACTAA
Statistics
Matches: 337, Mismatches: 70, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.02
27 327 0.97
28 4 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTATAAACGAG
Found at i:107082756 original size:81 final size:81
Alignment explanation
Indices: 107082545--107082942 Score: 435
Period size: 81 Copynumber: 4.9 Consensus size: 81
107082535 TTCTGTAAAT
* * * * * * ***
107082545 CAGGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTATAGGTC-GAGGGTAT
1 CAGGGGTATTTTGGTAATTTTACAA-ACAAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAT
** * *
107082608 TTCAGTAATTTCACAAAT
64 TTTGGTAATTTTACAAAC
* * *
107082626 CAGGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTT-GATAATTTTACAAACTAGGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATT
*
107082690 TTGGTAATTTTACAAGC
65 TTGGTAATTTTACAAAC
* *
107082707 CAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTACTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
*
107082772 TGGTAATTTTATAAAC
66 TGGTAATTTTACAAAC
* * * * * * ** *
107082788 AATGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
107082853 TGGTAATTTTACAAAC
66 TGGTAATTTTACAAAC
* * * *
107082869 TAGGGGTATTTTGGTGATTTTATAAACCAAA-GGTATTTTAGTAATTTTACAAACTAGGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAA-CAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATT
107082933 TTGGTAATTT
65 TTGGTAATTT
107082943 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 47, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.00
81 261 0.98
82 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
TGGTAATTTTACAAAC
Found at i:107082904 original size:108 final size:108
Alignment explanation
Indices: 107082629--107082954 Score: 483
Period size: 108 Copynumber: 3.0 Consensus size: 108
107082619 CACAAATCAG
* * * * * *
107082629 GGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
* *
107082694 TAATTTTACAAGCCAGGGGTATTTTGGTAATTTTATAAACAAA
66 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACAAA
**
107082737 GGGTATTTTACTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-CAATGGGTATTTTA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA-GGGTATTTTA
*
107082801 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
65 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACAAA
* * *
107082845 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAAGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
* *
107082910 TAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACTAAA
66 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAAC-AAA
107082954 G
1 G
107082955 TATTCTAAAC
Statistics
Matches: 196, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
107 1 0.01
108 189 0.96
109 6 0.03
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (108 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACAAA
Found at i:107082951 original size:27 final size:27
Alignment explanation
Indices: 107082602--107082942 Score: 439
Period size: 27 Copynumber: 12.6 Consensus size: 27
107082592 TATAGGTCGA
** * *
107082602 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
107082629 GGGTATTTTGGTAATTTTACAAACGAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
107082656 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
107082683 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
107082710 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
107082737 GGGTATTTTACTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
107082764 GGGTATTTTGGTAATTTTATAAACAAT
1 GGGTATTTTGGTAATTTTACAAACCAG
*
107082791 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
107082818 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
107082845 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
107082872 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
107082899 AGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
107082926 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
107082943 GGTAAACTAA
Statistics
Matches: 266, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 266 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:107084178 original size:48 final size:48
Alignment explanation
Indices: 107083956--107084180 Score: 260
Period size: 48 Copynumber: 4.7 Consensus size: 48
107083946 GGTAAATAGT
* * *
107083956 CAATGCCATGTCTCAGACATGGTCTTACACT-GGT-TCA-CATGTCAAGGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT---GGC
* * *
107084004 CGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCA-AATGTGGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
* *
107084051 TAATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTGGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
* * *
107084099 TAATGCCATGTCCCAGAGATGGTCTTACACTAGCTCTTATAATGTGGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
* * * *
107084147 CGATGCGATTTCCCAAACATGGTCTTACACTAGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTAGC
107084181 GCACATATCA
Statistics
Matches: 155, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
47 37 0.24
48 109 0.70
49 2 0.01
50 7 0.05
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGC
Found at i:107086662 original size:24 final size:24
Alignment explanation
Indices: 107086610--107086696 Score: 111
Period size: 24 Copynumber: 3.6 Consensus size: 24
107086600 TCCAGTACAT
* *
107086610 GTATGCTCACACGAGCTGTAAATCA
1 GTATGCTCTCACGAGCTGT-AATCG
* *
107086635 GTATGCTCTCATGAGCTATAATCG
1 GTATGCTCTCACGAGCTGTAATCG
* *
107086659 GTATGCTCTCACGAGTTGTAATAG
1 GTATGCTCTCACGAGCTGTAATCG
107086683 GTATGCTCTCACGA
1 GTATGCTCTCACGA
107086697 CTTATGGAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
24 38 0.70
25 16 0.30
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
GTATGCTCTCACGAGCTGTAATCG
Found at i:107088994 original size:24 final size:24
Alignment explanation
Indices: 107088967--107089105 Score: 260
Period size: 24 Copynumber: 5.8 Consensus size: 24
107088957 CTTATTATGT
**
107088967 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
107088991 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107089015 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107089039 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107089063 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107089087 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
107089106 TATTTCCAGC
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 113 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:107096902 original size:24 final size:24
Alignment explanation
Indices: 107096875--107096989 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
107096865 CTTATTATGT
**
107096875 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
107096899 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107096923 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107096947 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
107096971 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
107096990 TATTTCCAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:107103803 original size:50 final size:50
Alignment explanation
Indices: 107103686--107103863 Score: 218
Period size: 50 Copynumber: 3.6 Consensus size: 50
107103676 CTGATATGCA
* * * * *
107103686 TAGTAG-CTGCACTTAGTACTACATATGCGACC-AACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
* * *
107103734 TAATAGCCTGCACTTAGTACTACACATGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
* *
107103784 TAGTAGCCTGCACTTAGTACTACACATGTGACTTAA-CAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCA-TCTGGTACACG
* *
107103834 TAGTAGTCTGTACTTAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
107103864 TATTCACAAT
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
48 5 0.04
49 26 0.23
50 81 0.72
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
Found at i:107105646 original size:20 final size:19
Alignment explanation
Indices: 107105621--107105709 Score: 58
Period size: 20 Copynumber: 4.6 Consensus size: 19
107105611 ATGAAAATAC
107105621 AAAAGAAAAGAAAAATGAGA
1 AAAAGAAAAGAAAAA-GAGA
* * * *
107105641 AAAAGAGAGGAAAAATTA-T
1 AAAAGAAAAGAAAAA-GAGA
107105660 AAAAGAAAATGAGAAAA-AG-
1 AAAAGAAAA-GA-AAAAGAGA
* *
107105679 ACAAGAAAAGAGAAAGAAGA
1 AAAAGAAAAGAAAAAG-AGA
107105699 AAAAGAAAAGA
1 AAAAGAAAAGA
107105710 TTGTGAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
17 3 0.06
18 2 0.04
19 18 0.33
20 27 0.50
21 4 0.07
ACGTcount: A:0.72, C:0.01, G:0.21, T:0.06
Consensus pattern (19 bp):
AAAAGAAAAGAAAAAGAGA
Found at i:107105684 original size:19 final size:19
Alignment explanation
Indices: 107105662--107105709 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
107105652 AAAATTATAA
107105662 AAGAAAATGAGAAA-AAGAC
1 AAGAAAA-GAGAAAGAAGAC
*
107105681 AAGAAAAGAGAAAGAAGAAA
1 AAGAAAAGAGAAAGAAG-AC
107105701 AAGAAAAGA
1 AAGAAAAGA
107105710 TTGTGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 6 0.23
19 10 0.38
20 10 0.38
ACGTcount: A:0.73, C:0.02, G:0.23, T:0.02
Consensus pattern (19 bp):
AAGAAAAGAGAAAGAAGAC
Found at i:107105699 original size:33 final size:32
Alignment explanation
Indices: 107105621--107105701 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 32
107105611 ATGAAAATAC
* *
107105621 AAAAGAAAAG-A-AAAATGAGAAAAAGAGAGG
1 AAAAGAAAAGAAGAAAATGAGAAAAAGACAAG
107105651 AAAA-ATTATAA-AAGAAAATGAGAAAAAGACAAG
1 AAAAGA--A-AAGAAGAAAATGAGAAAAAGACAAG
107105684 AAAAGAGAAAGAAGAAAA
1 AAAAGA-AAAGAAGAAAA
107105702 AGAAAAGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
29 1 0.02
30 4 0.10
31 1 0.02
32 5 0.12
33 29 0.71
34 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.21, T:0.06
Consensus pattern (32 bp):
AAAAGAAAAGAAGAAAATGAGAAAAAGACAAG
Found at i:107105708 original size:14 final size:13
Alignment explanation
Indices: 107105660--107105709 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
107105650 GAAAAATTAT
107105660 AAAAGAAAATGAGA
1 AAAAGAAAA-GAGA
*
107105674 AAAAGACAAGA-A
1 AAAAGAAAAGAGA
*
107105686 AAGAG-AAAGAAGA
1 AAAAGAAAAG-AGA
107105699 AAAAGAAAAGA
1 AAAAGAAAAGA
107105710 TTGTGAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 3 0.10
12 6 0.21
13 8 0.28
14 12 0.41
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAGAGA
Found at i:107106761 original size:14 final size:14
Alignment explanation
Indices: 107106744--107106783 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
107106734 CGAATGGAAT
*
107106744 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
107106758 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
107106772 GATATGAACAAA
1 GGTAGGAACAAA
107106784 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:107110674 original size:80 final size:80
Alignment explanation
Indices: 107110590--107110738 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
107110580 TATGGTAACC
* * * *
107110590 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
107110654 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
107110670 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
107110735 CCGG
66 CCGG
107110739 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:107110680 original size:40 final size:38
Alignment explanation
Indices: 107110631--107110738 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
107110621 ATCACGATTT
*
107110631 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
107110671 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
107110711 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
107110739 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:107117980 original size:80 final size:80
Alignment explanation
Indices: 107117896--107118044 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
107117886 TATGGTAACC
* * * *
107117896 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
107117960 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
107117976 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
107118041 CCGG
66 CCGG
107118045 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:107117986 original size:40 final size:38
Alignment explanation
Indices: 107117937--107118044 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
107117927 ATCACGATTT
*
107117937 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
107117977 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
107118017 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
107118045 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:107120478 original size:2 final size:2
Alignment explanation
Indices: 107120471--107120510 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
107120461 ATGTGCAAAA
*
107120471 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107120511 GTACATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:107120515 original size:8 final size:8
Alignment explanation
Indices: 107120475--107120517 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
107120465 GCAAAAATAT
*
107120475 ATATATAT
1 ATATATAC
*
107120483 ATATATAT
1 ATATATAC
*
107120491 ATATATAT
1 ATATATAC
107120499 ATATATAC
1 ATATATAC
*
107120507 ATATGTAC
1 ATATATAC
107120515 ATA
1 ATA
107120518 AAATATACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (8 bp):
ATATATAC
Found at i:107120909 original size:11 final size:11
Alignment explanation
Indices: 107120875--107120913 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
107120865 ATGTATATAT
107120875 AAAGAAAGAAA
1 AAAGAAAGAAA
* *
107120886 AAAAAACACAAA
1 AAAGAA-AGAAA
107120898 AAAGAAAGAAA
1 AAAGAAAGAAA
107120909 AAAGA
1 AAAGA
107120914 TTCGAAAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:107121270 original size:16 final size:16
Alignment explanation
Indices: 107121251--107121285 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
107121241 TTGGGGTAAG
107121251 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
107121267 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
107121283 TTT
1 TTT
107121286 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:107122244 original size:72 final size:71
Alignment explanation
Indices: 107122151--107122329 Score: 202
Period size: 74 Copynumber: 2.5 Consensus size: 71
107122141 AATTAAAAGA
* * *
107122151 CTCAACTCACCTCTCGTAATATGAATTGACTCTTTAAGA-T-A-GAATTTGAAAATACCTTAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTT-AGATTAAGGAA-TTGAAAATACCTCAGCG
*
107122213 TGCCGCAAGG
62 TGCCCCAAGG
* *
107122223 CTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA-TTAA--GGAATTGAAAATACCTCAGCGT
107122288 GCCCCAAGG
63 GCCCCAAGG
* *
107122297 TTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
107122330 TCGCAATATG
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
69 3 0.03
70 3 0.03
71 2 0.02
72 27 0.29
74 54 0.59
75 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTAAGGAATTGAAAATACCTCAGCGTGCC
CCAAGG
Found at i:107122335 original size:20 final size:20
Alignment explanation
Indices: 107122310--107122349 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
107122300 AACTCACTTC
*
107122310 TCGCAATATGAGTTGATTTT
1 TCGCAATATGAGTCGATTTT
107122330 TCGCAATATGAGTCGATTTT
1 TCGCAATATGAGTCGATTTT
107122350 AGATTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (20 bp):
TCGCAATATGAGTCGATTTT
Found at i:107122353 original size:94 final size:94
Alignment explanation
Indices: 107122236--107122424 Score: 378
Period size: 94 Copynumber: 2.0 Consensus size: 94
107122226 AACTCACCTC
107122236 TCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGTGCCCCAAGGTTCA
1 TCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGTGCCCCAAGGTTCA
107122301 ACTCACTTCTCGCAATATGAGTTGATTTT
66 ACTCACTTCTCGCAATATGAGTTGATTTT
107122330 TCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGTGCCCCAAGGTTCA
1 TCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGTGCCCCAAGGTTCA
107122395 ACTCACTTCTCGCAATATGAGTTGATTTT
66 ACTCACTTCTCGCAATATGAGTTGATTTT
107122424 T
1 T
107122425 GAAACATGAA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (94 bp):
TCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGTGCCCCAAGGTTCA
ACTCACTTCTCGCAATATGAGTTGATTTT
Found at i:107122572 original size:159 final size:160
Alignment explanation
Indices: 107122362--107122815 Score: 723
Period size: 159 Copynumber: 2.8 Consensus size: 160
107122352 ATTTAATGGG
* ** *
107122362 AATTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* *
107122427 AACATGAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACATGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
107122492 TTTCTTGG-AAACATGAACTAAAAAGCAGA
131 TTTCTTGGAAAACATGAACTAAAAAGCAGA
107122521 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
107122586 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
* *
107122651 TTTCTTGGAAAACATGAATTAAAAAGTAGA
131 TTTCTTGGAAAACATGAACTAAAAAGCAGA
107122681 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-A
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * * * **
107122745 TTTAATAGGAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCT
66 ---AACATGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
*
107122810 GCTTTT
128 GATTTT
107122816 TGAAACATAA
Statistics
Matches: 274, Mismatches: 17, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
159 132 0.48
160 82 0.30
162 60 0.22
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATGAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAACTAAAAAGCAGA
Found at i:107122636 original size:71 final size:71
Alignment explanation
Indices: 107122520--107122886 Score: 279
Period size: 71 Copynumber: 4.9 Consensus size: 71
107122510 TAAAAAGCAG
* * *
107122520 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
107122585 AAACAT
66 AAACAT
* * *
107122591 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTT-T
107122656 TGGAAAACAT
64 T-G-AAACAT
* * ** * ** * * * * *
107122666 GAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATA
1 AAATTGAAAA-T---ACCTCAACGTGCC-CTGAG-G--CTCA-ACTC-A--C-C-TCTCGCAATA
* *
107122731 TGAGTTGATTTTT-ATTTA-AT
52 TGAGCTGATTTTTGA--AACAT
* * * *
107122751 AGGAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTT
1 A--AATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
107122816 TGAAACAT
64 TGAAACAT
* * *
107122824 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
107122887 CTTGGAAAAC
Statistics
Matches: 227, Mismatches: 45, Indels: 48
0.71 0.14 0.15
Matches are distributed among these distances:
71 110 0.48
72 4 0.02
73 26 0.11
74 3 0.01
75 14 0.06
76 1 0.00
77 1 0.00
78 3 0.01
79 9 0.04
80 2 0.01
81 2 0.01
82 3 0.01
83 9 0.04
84 4 0.02
85 3 0.01
86 2 0.01
87 10 0.04
88 4 0.02
89 17 0.07
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:107122788 original size:233 final size:233
Alignment explanation
Indices: 107122521--107122976 Score: 849
Period size: 233 Copynumber: 2.0 Consensus size: 233
107122511 AAAAAGCAGA
* * *
107122521 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
107122586 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
107122651 TTTCTTGGAAAACATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
107122716 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
196 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
* *
107122754 AATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
107122819 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
107122884 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGGAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
107122949 TCACTTCTCGCAATATGAGTTGATTTTT
196 TCACTTCTCGCAATATGAGTTGATTTTT
107122977 GGAAAAAAAC
Statistics
Matches: 216, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
233 216 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (233 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
Found at i:107122800 original size:73 final size:71
Alignment explanation
Indices: 107122680--107122886 Score: 283
Period size: 73 Copynumber: 2.9 Consensus size: 71
107122670 TAAAAAGTAG
* * *
107122680 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
*
107122744 ATTTA-AT
66 A--AACAT
* *
107122751 AGGAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTT
1 A--AATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
107122816 TGAAACAT
64 TGAAACAT
* * *
107122824 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
107122887 CTTGGAAAAC
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
71 58 0.48
72 1 0.01
73 61 0.50
74 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (71 bp):
AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:107132560 original size:53 final size:53
Alignment explanation
Indices: 107132381--107132635 Score: 259
Period size: 55 Copynumber: 4.8 Consensus size: 53
107132371 ATTAGGGTTT
* *
107132381 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGT-AAGTTTATAAGGC
* * * *
107132436 AAGGATATCATGTAAGACCATGTCAAGACATGGTATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TATAAGGC
* * *
107132491 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTTATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * *
107132544 AAGGATATCATGTAAGACAATGTCAAGACATGGCAATGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * *
107132593 AAGGATACCACGTAAGACTATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
107132636 GTACCCCTGT
Statistics
Matches: 170, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
49 38 0.22
52 6 0.04
53 47 0.28
54 5 0.03
55 70 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
Found at i:107132587 original size:108 final size:110
Alignment explanation
Indices: 107132388--107132588 Score: 334
Period size: 108 Copynumber: 1.8 Consensus size: 110
107132378 TTTAAGGATA
*
107132388 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGA
* * *
107132453 CCATGTCAAGACATGGTATTGATAAGTTACTATAAGGCAAAGGTC
66 CAATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
*
107132498 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGT-GAGTTTATAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGA
*
107132561 CAATGTCAAGACATGGCAATGGTAAGTT
66 CAATGTCAAGACATGGCAATGATAAGTT
107132589 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
108 52 0.61
109 6 0.07
110 27 0.32
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAAGTTTATAAGGCAAGGATATCATGTAAGA
CAATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:107136270 original size:39 final size:39
Alignment explanation
Indices: 107136216--107136464 Score: 392
Period size: 39 Copynumber: 6.4 Consensus size: 39
107136206 GACTTTAAGA
* * *
107136216 CCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGC
* *
107136255 CCGGATATAACACCAGCACGAATGCCTTTGGGGCTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
107136294 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
107136333 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* *
107136372 CCGGATATAACACCAGCACGGATGCCTTCAGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
* *
107136411 CCGGATATAACACCAACACGAATGCCTTTGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
*
107136450 CCAGATATAACACCA
1 CCGGATATAACACCA
107136465 TTATAAAGTC
Statistics
Matches: 195, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 185 0.95
40 10 0.05
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGC
Found at i:107136570 original size:28 final size:28
Alignment explanation
Indices: 107136537--107136603 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
107136527 ATTTAATCAT
* *
107136537 TCAATATTTTGCACACTATGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
* *
107136565 TCAATATCTCGCACATTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
107136593 TCAATATTTCG
1 TCAATATTTCG
107136604 TAGACTGAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGTCATTC
Found at i:107142779 original size:40 final size:39
Alignment explanation
Indices: 107142614--107142797 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
107142604 AAATTGAATG
* * *
107142614 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
107142654 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
107142694 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
107142734 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
107142773 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
107142798 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:107142822 original size:80 final size:81
Alignment explanation
Indices: 107142654--107142842 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
107142644 GCTGGAAATT
* * * *
107142654 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
107142719 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
107142735 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
107142798 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
107142814 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
107142843 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:107150899 original size:40 final size:39
Alignment explanation
Indices: 107150734--107150917 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
107150724 AAATTGAATG
* * *
107150734 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
107150774 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
107150814 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
107150854 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
107150893 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
107150918 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:107150942 original size:80 final size:81
Alignment explanation
Indices: 107150774--107150962 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
107150764 GCTGGAAATT
* * * *
107150774 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
107150839 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
107150855 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
107150918 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
107150934 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
107150963 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:107155228 original size:20 final size:20
Alignment explanation
Indices: 107155162--107155228 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
107155152 ATTTTAGTAA
* *
107155162 ACATGGTATGTATAATATGC
1 ACATGATATGTATGATATGC
* *
107155182 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
107155202 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
107155222 ACATGAT
1 ACATGAT
107155229 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:107155361 original size:24 final size:25
Alignment explanation
Indices: 107155279--107155383 Score: 167
Period size: 25 Copynumber: 4.2 Consensus size: 25
107155269 AGGAAGTGTA
107155279 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
107155304 AAAGGGCTTATGCCCCAATTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
107155329 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
107155353 AAAGGGCTTATGCCCCAGTTATATGAT
1 AAAGGGCTTATGCCCCAG-T-TATGAT
107155380 AAAG
1 AAAG
107155384 CAGTTATGCT
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
24 18 0.25
25 47 0.64
26 4 0.05
27 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:107155602 original size:31 final size:31
Alignment explanation
Indices: 107155567--107155647 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
107155557 CCGTTTACAT
*
107155567 AAAGGCTTCAGCCTAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
107155598 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* *
107155629 AAAGGGCTACGGCCCAGTA
1 AAA-GGCTTCAGCCCAGTA
107155648 CATGTTAAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 30 0.70
32 13 0.30
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:107163213 original size:24 final size:24
Alignment explanation
Indices: 107163129--107163274 Score: 206
Period size: 25 Copynumber: 6.0 Consensus size: 24
107163119 GGAGGAAGTG
107163129 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
107163153 GATAAAGGGCTTATGCCCTAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
107163178 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
107163203 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
107163227 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
107163250 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
107163275 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 19 0.17
24 40 0.35
25 54 0.48
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:107163504 original size:31 final size:31
Alignment explanation
Indices: 107163468--107163531 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
107163458 CGTTTACAGT
* *
107163468 AAAGGCTTCGGCCTAGTAATATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
107163499 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
107163530 AA
1 AA
107163532 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:107165841 original size:55 final size:54
Alignment explanation
Indices: 107165754--107166009 Score: 264
Period size: 55 Copynumber: 4.8 Consensus size: 54
107165744 ATTAGGGTTT
*
107165754 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
107165809 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
107165864 AAAGG-T-CTCATGTAAAACCATGCCAAGGCATGGC-ATTTGTGAG-TTCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
107165917 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
107165966 AAGGATACCACGTAAGACCCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGA-CCATGCCAAGACATGGCAATTGGTAAG
107166010 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 20, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
49 16 0.09
50 24 0.14
52 7 0.04
53 39 0.23
54 13 0.08
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:107165960 original size:108 final size:110
Alignment explanation
Indices: 107165762--107165961 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
107165752 TTAAGGATAC
* *
107165762 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGAC
1 CATGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
* *
107165827 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 CATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* *
107165872 CATGTAAAACCATGCCAAGGCATGGC-ATTTGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGA
*
107165934 CCATGCCAAGACATGGCAATGGTAAGTT
65 CCATGCCAAGACATGGCAATGATAAGTT
107165962 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 6 0.07
110 25 0.30
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CATGTAAAACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGAC
CATGCCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:107169247 original size:43 final size:42
Alignment explanation
Indices: 107169199--107169335 Score: 120
Period size: 43 Copynumber: 3.2 Consensus size: 42
107169189 TCTGGGATGT
107169199 TGGCATTGATATGTGATTTCGA-GTAAAACCATGTCTGGGACA
1 TGGCATTGATATGTGATTTC-ATGTAAAACCATGTCTGGGACA
* * *
107169241 TCGGCA-TCATAATTGTGA-TTCATGTAAAACCCTGTCTAGGACAA
1 T-GGCATTGAT-A-TGTGATTTCATGTAAAACCATGTCTGGGAC-A
* * * *
107169285 TGGCATCGACT-TGTGATTACATGTAAGACCACGTCTGGGACA
1 TGGCATTGA-TATGTGATTTCATGTAAAACCATGTCTGGGACA
107169327 TTGGCATTG
1 -TGGCATTG
107169336 TACGATATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
42 11 0.15
43 55 0.73
44 8 0.11
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
TGGCATTGATATGTGATTTCATGTAAAACCATGTCTGGGACA
Found at i:107169751 original size:17 final size:19
Alignment explanation
Indices: 107169709--107169752 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
107169699 ATGAAATTTT
*
107169709 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
107169728 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
107169746 AA-TATTA
1 AATTATTA
107169753 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:107171566 original size:28 final size:28
Alignment explanation
Indices: 107171534--107171602 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
107171524 GCGTAGATCA
107171534 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
107171562 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
107171590 CGATA-TACCCCTA
1 CGAAATTACCCCTA
107171603 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:107173999 original size:17 final size:19
Alignment explanation
Indices: 107173957--107174000 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
107173947 ATGAAATTTT
*
107173957 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
107173976 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
107173994 AA-TATTA
1 AATTATTA
107174001 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:107175817 original size:28 final size:28
Alignment explanation
Indices: 107175785--107175853 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
107175775 GCGTAGATCA
107175785 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
107175813 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
107175841 CGATA-TACCCCTA
1 CGAAATTACCCCTA
107175854 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:107177844 original size:15 final size:15
Alignment explanation
Indices: 107177824--107177854 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
107177814 TGGAGACTAG
107177824 TTGCAGGCTCAGGGA
1 TTGCAGGCTCAGGGA
*
107177839 TTGCAGGCTCGGGGA
1 TTGCAGGCTCAGGGA
107177854 T
1 T
107177855 CGTCAGGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (15 bp):
TTGCAGGCTCAGGGA
Found at i:107188843 original size:40 final size:40
Alignment explanation
Indices: 107188758--107188908 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
107188748 AATTGAATGA
* * * **
107188758 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
107188798 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
107188839 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
107188878 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
107188909 ATGGTTATAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:107196855 original size:40 final size:40
Alignment explanation
Indices: 107196770--107196920 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
107196760 AATTGAATGA
* * * **
107196770 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
107196810 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
107196851 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
107196890 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
107196921 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:107196934 original size:40 final size:40
Alignment explanation
Indices: 107196807--107196936 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
107196797 ATGCTGGAAA
* * *
107196807 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
107196847 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
107196887 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
107196927 TTATATCCGG
1 TTATATCCGG
107196937 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:107203045 original size:40 final size:40
Alignment explanation
Indices: 107202972--107203048 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
107202962 ACGGTACCTT
*
107202972 TTGGTGTGTAGGGTTGGATAAGTTGATTATATCCCCATAC
1 TTGGTGTGTAGGGTTGGATAAGTCGATTATATCCCCATAC
** *
107203012 TTGGTGTGTAGGGTTCGG-TGGGTCGATTCTATCCCCA
1 TTGGTGTGTAGGGTT-GGATAAGTCGATTATATCCCCA
107203049 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.17, C:0.16, G:0.31, T:0.36
Consensus pattern (40 bp):
TTGGTGTGTAGGGTTGGATAAGTCGATTATATCCCCATAC
Found at i:107210904 original size:130 final size:130
Alignment explanation
Indices: 107210671--107210935 Score: 530
Period size: 130 Copynumber: 2.0 Consensus size: 130
107210661 ACTAAGTTAC
107210671 TGCGTAAGGGAATTTCCTTTATTTGGAAGGACGCTCACCAGGAGAGCTTTGAGAAGCTCAAGACA
1 TGCGTAAGGGAATTTCCTTTATTTGGAAGGACGCTCACCAGGAGAGCTTTGAGAAGCTCAAGACA
107210736 GTCTTGACTCAGGCTCTAGTTCTGATACAACCTAATTTTGGCAAGGATTTCGTGGTTTACAGTGA
66 GTCTTGACTCAGGCTCTAGTTCTGATACAACCTAATTTTGGCAAGGATTTCGTGGTTTACAGTGA
107210801 TGCGTAAGGGAATTTCCTTTATTTGGAAGGACGCTCACCAGGAGAGCTTTGAGAAGCTCAAGACA
1 TGCGTAAGGGAATTTCCTTTATTTGGAAGGACGCTCACCAGGAGAGCTTTGAGAAGCTCAAGACA
107210866 GTCTTGACTCAGGCTCTAGTTCTGATACAACCTAATTTTGGCAAGGATTTCGTGGTTTACAGTGA
66 GTCTTGACTCAGGCTCTAGTTCTGATACAACCTAATTTTGGCAAGGATTTCGTGGTTTACAGTGA
107210931 TGCGT
1 TGCGT
107210936 CACATGTGGG
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 135 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (130 bp):
TGCGTAAGGGAATTTCCTTTATTTGGAAGGACGCTCACCAGGAGAGCTTTGAGAAGCTCAAGACA
GTCTTGACTCAGGCTCTAGTTCTGATACAACCTAATTTTGGCAAGGATTTCGTGGTTTACAGTGA
Found at i:107212433 original size:40 final size:40
Alignment explanation
Indices: 107212388--107212554 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107212378 CGGAATATAA
107212388 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
107212428 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
107212468 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
107212508 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107212547 CCGGATAT
1 CCGGATAT
107212555 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107212538 original size:80 final size:79
Alignment explanation
Indices: 107212388--107212554 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
107212378 CGGAATATAA
* *
107212388 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
107212453 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
107212468 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
107212530 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
107212547 CCGGATAT
1 CCGGATAT
107212555 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:107213402 original size:17 final size:19
Alignment explanation
Indices: 107213379--107213424 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
107213369 AAGAAGCATG
107213379 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
107213397 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
107213415 AATCATGCTC
1 AATCATGCTC
107213425 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:107225286 original size:30 final size:30
Alignment explanation
Indices: 107225250--107225317 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
107225240 GGATCAATAA
107225250 TTTTATTTTTTTATTTTTAGGAATTTAGTT
1 TTTTATTTTTTTATTTTTAGGAATTTAGTT
107225280 TTTTATTTTTTTATTTTTAGGAATTTAGTT
1 TTTTATTTTTTTATTTTTAGGAATTTAGTT
107225310 TTTT-TTTT
1 TTTTATTTT
107225318 CAAATTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (30 bp):
TTTTATTTTTTTATTTTTAGGAATTTAGTT
Found at i:107230548 original size:26 final size:26
Alignment explanation
Indices: 107230512--107230647 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
107230502 CATGGAATTC
*
107230512 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAACCCA
*
107230538 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107230564 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
107230590 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107230616 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
107230642 TTATCA
1 TTATCA
107230648 ATTTGTATCA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:107230593 original size:52 final size:52
Alignment explanation
Indices: 107230512--107230645 Score: 243
Period size: 52 Copynumber: 2.6 Consensus size: 52
107230502 CATGGAATTC
*
107230512 TTATCATGAAACATTTACCTAA-CTCATTATTATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCT-ATTATTATGAAACATTTACCTAACCCA
107230564 TTATCATGGAACATTTACCTAACCTATTATTATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATTATGAAACATTTACCTAACCCA
107230616 TTATCATGGAACATTTACCTAACCTATTAT
1 TTATCATGGAACATTTACCTAACCTATTAT
107230646 CAATTTGTAT
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
52 78 0.98
53 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATTATGAAACATTTACCTAACCCA
Found at i:107233043 original size:35 final size:35
Alignment explanation
Indices: 107232997--107233067 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
107232987 CCTAAGTCGG
107232997 GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
1 GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
* *
107233032 GCAGAGCAAAGAAATAGGCTAAATTAATAGTATAT
1 GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
107233067 G
1 G
107233068 TTATTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21
Consensus pattern (35 bp):
GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
Found at i:107233793 original size:16 final size:16
Alignment explanation
Indices: 107233772--107233805 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107233762 CAAATTTTGG
107233772 TTTATTTAATTTAATT
1 TTTATTTAATTTAATT
* *
107233788 TTTATTTTATTTAGTT
1 TTTATTTAATTTAATT
107233804 TT
1 TT
107233806 CCACGTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTATTTAATTTAATT
Found at i:107238314 original size:26 final size:26
Alignment explanation
Indices: 107238285--107238340 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
107238275 TGATAAAAAT
107238285 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107238311 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107238337 TGAT
1 TGAT
107238341 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107239544 original size:8 final size:8
Alignment explanation
Indices: 107239521--107239556 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
107239511 CTAGATCGGC
*
107239521 AAAAGCCA
1 AAAAGCCG
107239529 AAAAGCCG
1 AAAAGCCG
107239537 AAAAGCCG
1 AAAAGCCG
*
107239545 AAATGCCG
1 AAAAGCCG
107239553 AAAA
1 AAAA
107239557 CCGGTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.56, C:0.22, G:0.19, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:107251204 original size:46 final size:47
Alignment explanation
Indices: 107251064--107251224 Score: 117
Period size: 52 Copynumber: 3.3 Consensus size: 47
107251054 CCATGGCAGC
* ** * *
107251064 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAG
1 ATGTGATATGTGA--TCCGTATAAGACCATAGCCAGGATATGGCCTC--AG
* * *
107251115 AAATGTGATATGTGCTTCCGTATAAGACCATATCCAGGATATGGCGTCAG
1 --ATGTGATATGTG-ATCCGTATAAGACCATAGCCAGGATATGGCCTCAG
* * ** * *
107251165 -TGTGATATGTGATCCGTGTAAGACCATGGCTGGGGTATGGCCTCGG
1 ATGTGATATGTGATCCGTATAAGACCATAGCCAGGATATGGCCTCAG
107251211 TATGTGATATGTGA
1 -ATGTGATATGTGA
107251225 CTATGTGCAA
Statistics
Matches: 89, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
46 26 0.29
47 11 0.12
48 12 0.13
50 2 0.02
52 27 0.30
53 11 0.12
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATATGTGATCCGTATAAGACCATAGCCAGGATATGGCCTCAG
Found at i:107256262 original size:18 final size:17
Alignment explanation
Indices: 107256239--107256282 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
107256229 AATACTTAAA
107256239 ATAAATA-ATAATGACAAT
1 ATAAATAGATAA-GA-AAT
107256257 ATAAATAGATAAGAAAT
1 ATAAATAGATAAGAAAT
107256274 AT-AATAGAT
1 ATAAATAGAT
107256283 GAGTGATAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.28
17 5 0.20
18 9 0.36
19 4 0.16
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.27
Consensus pattern (17 bp):
ATAAATAGATAAGAAAT
Found at i:107256281 original size:16 final size:17
Alignment explanation
Indices: 107256237--107256282 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
107256227 ATAATACTTA
107256237 AAATA-AATA-ATAATG
1 AAATATAATAGATAATG
107256252 ACAATATAAATAGATAA-G
1 A-AATAT-AATAGATAATG
107256270 AAATATAATAGAT
1 AAATATAATAGAT
107256283 GAGTGATAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 11 0.41
17 5 0.19
18 6 0.22
19 4 0.15
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (17 bp):
AAATATAATAGATAATG
Found at i:107256361 original size:3 final size:3
Alignment explanation
Indices: 107256353--107256384 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
107256343 TAATTACAAA
107256353 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
107256385 CATAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:107256392 original size:3 final size:3
Alignment explanation
Indices: 107256386--107256619 Score: 51
Period size: 3 Copynumber: 78.0 Consensus size: 3
107256376 GATGATGATC
* * ** *
107256386 ATA ATA ATA ATA ATA ATA ATA GTA ATAA ATA TTA ACG GTGA A-A ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA AT-A ATA A-TA
* ** ** * *
107256433 ATA GA-A ATA ATA ATG ATA ACG ATA AGG ATA ATA ATA CTA ACA ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * *
107256478 ATA ATG A-A AT- ATA AAA AGC A-A AT- ATA AT- GTA ATG ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
107256520 AAA ATA A-A GTA ATTA ATA ATA ATA CT- ATA TATA A-A TATA TATA CATA
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA -ATA ATA -ATA -ATA -ATA
* * * *
107256567 TATA ATA AAA AT- ATA CACTA ATA TTA ATA ATA ATA ATG ATA ATA GTA
1 -ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107256614 ATA ATA
1 ATA ATA
107256620 TTGAAATACA
Statistics
Matches: 160, Mismatches: 50, Indels: 42
0.63 0.20 0.17
Matches are distributed among these distances:
2 17 0.11
3 116 0.73
4 25 0.16
5 2 0.01
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:107256598 original size:19 final size:20
Alignment explanation
Indices: 107256531--107256598 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 20
107256521 AAATAAAGTA
*
107256531 ATTAATAATA-ATACTATAT
1 ATTAATAATATACACTATAT
*
107256550 ATAAATATATATACA-TATAT
1 ATTAATA-ATATACACTATAT
* *
107256570 AATAAAAATATACACTA-AT
1 ATTAATAATATACACTATAT
107256589 ATTAATAATA
1 ATTAATAATA
107256599 ATAATGATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 23 0.59
20 14 0.36
21 2 0.05
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTAATAATATACACTATAT
Found at i:107256698 original size:18 final size:17
Alignment explanation
Indices: 107256677--107256782 Score: 72
Period size: 18 Copynumber: 5.6 Consensus size: 17
107256667 GTAATTAGAA
107256677 ATAATACTATATATAAAT
1 ATAATA-TATATATAAAT
*
107256695 ATAAATATATATATACAT
1 AT-AATATATATATAAAT
*
107256713 ATACATATATA-ATAAAAA
1 ATA-ATATATATAT-AAAT
107256731 ATACACTA-ATATATATAAT
1 ATA-A-TATATATATA-AAT
107256750 ATTAATAATAATAATATAAAT
1 A-TAAT-AT-AT-ATATAAAT
107256771 AATAATATATAT
1 -ATAATATATAT
107256783 GTATGAATAA
Statistics
Matches: 72, Mismatches: 4, Indels: 24
0.72 0.04 0.24
Matches are distributed among these distances:
17 3 0.04
18 35 0.49
19 15 0.21
20 4 0.06
21 9 0.12
22 6 0.08
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (17 bp):
ATAATATATATATAAAT
Found at i:107256804 original size:139 final size:140
Alignment explanation
Indices: 107256474--107256821 Score: 348
Period size: 139 Copynumber: 2.5 Consensus size: 140
107256464 TAATACTAAC
*
107256474 AATAATAATGAAATATAAAAAGCAA-ATATAATGTAATG-ATAAT-ATAAAAATAAAGTAATTAA
1 AATAATAATGAAATACAAAAAGCAATATAT-ATGT-ATGAATAATAATAAAAATAAAGTAATTAA
* * *
107256536 TAATAATACTATATATAAATATATATACATATATAATAAAAATATACACTAATATTAATAATAAT
64 TAATAATACTATATATAAATATAAATACATATATAATAAAAATATACAATAATATAAATAATAAT
107256601 AATGATAATAGT
129 AATGATAATAGT
* *
107256613 AATAATATTGAAATACAAAAAGCAA-ATATA-ATAT-AATAA-AGATATTAAAATAAAGTAATTA
1 AATAATAATGAAATACAAAAAGCAATATATATGTATGAATAATA-ATA--AAAATAAAGTAATTA
* * * *
107256674 GA-AATAATACTATATATAAATATAAATATATATATACATATACATATATAATAA-A-AAATACA
63 -ATAATAATACTATATATAAATATAAATACATATATA-ATAAAAATATACAATAATATAAATA-A
*
107256736 CTAATATAT-ATAATATT
125 -TAATA-ATGATAATAGT
* * * *
107256753 AATAATAAT-AATATA-AATAA-TAATATATATGTATGAATAATAATAATAATAATAATAA-TAA
1 AATAATAATGAA-ATACAAAAAGCAATATATATGTATGAATAATAATAAAAATAA-AGTAATTAA
107256814 TAATAATA
64 TAATAATA
107256822 ATAGGAGTAG
Statistics
Matches: 175, Mismatches: 17, Indels: 34
0.77 0.08 0.15
Matches are distributed among these distances:
136 6 0.03
137 4 0.02
138 8 0.05
139 102 0.58
140 44 0.25
141 10 0.06
142 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (140 bp):
AATAATAATGAAATACAAAAAGCAATATATATGTATGAATAATAATAAAAATAAAGTAATTAATA
ATAATACTATATATAAATATAAATACATATATAATAAAAATATACAATAATATAAATAATAATAA
TGATAATAGT
Found at i:107256841 original size:3 final size:3
Alignment explanation
Indices: 107256745--107256824 Score: 92
Period size: 3 Copynumber: 26.0 Consensus size: 3
107256735 ACTAATATAT
* *
107256745 ATA ATA TTA ATA ATA ATA AT- ATAA ATA ATA AT- ATA TATGT ATGA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -AT-A AT-A ATA
107256792 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107256825 GGAGTAGTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
2 4 0.06
3 55 0.81
4 9 0.13
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:107257951 original size:31 final size:32
Alignment explanation
Indices: 107257916--107258008 Score: 125
Period size: 38 Copynumber: 2.8 Consensus size: 32
107257906 ATAGTTGGGT
107257916 TTTGGGTATTGGGTTTTAATGGATTTAGGGATTTGGG
1 TTTGGGTATTGGGTTTTAATGGATTTAGGGA-----G
107257953 TTCTGGGTATTGGGTTTTAATGGATTTAGGGA-
1 TT-TGGGTATTGGGTTTTAATGGATTTAGGGAG
107257985 TTTGGGTATTGGGTTTTAATGGAT
1 TTTGGGTATTGGGTTTTAATGGAT
107258009 AGTGGGGTTT
Statistics
Matches: 55, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
31 22 0.40
32 2 0.04
37 2 0.04
38 29 0.53
ACGTcount: A:0.17, C:0.01, G:0.35, T:0.46
Consensus pattern (32 bp):
TTTGGGTATTGGGTTTTAATGGATTTAGGGAG
Found at i:107257960 original size:38 final size:38
Alignment explanation
Indices: 107257910--107257991 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
107257900 TTAAGGATAG
*
107257910 TTGGGTTTTGGGTATTGGGTTTTAATGGATTTAGGGAT
1 TTGGGTTCTGGGTATTGGGTTTTAATGGATTTAGGGAT
107257948 TTGGGTTCTGGGTATTGGGTTTTAATGGATTTAGGGAT
1 TTGGGTTCTGGGTATTGGGTTTTAATGGATTTAGGGAT
107257986 TTGGGT
1 TTGGGT
107257992 ATTGGGTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.15, C:0.01, G:0.38, T:0.46
Consensus pattern (38 bp):
TTGGGTTCTGGGTATTGGGTTTTAATGGATTTAGGGAT
Found at i:107258785 original size:79 final size:78
Alignment explanation
Indices: 107258621--107258839 Score: 323
Period size: 79 Copynumber: 2.8 Consensus size: 78
107258611 AGAGACTAAA
* ** * * * * *
107258621 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTTAAAAAAAACATAAATTGAAAATATC
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTTTGAAAAAAATAGAAA-TAAAAATACC
*
107258686 TCAGCGTGTGTCCCG
64 TCAGCGTGTGACCCG
107258701 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAACTAAAAATACCT
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAA-TAAAAATACCT
107258766 CAGCGTGTGACCCG
65 CAGCGTGTGACCCG
107258780 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTG-AAAAAATAGAAATAAAAATA
1 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAATAAAAATA
107258840 TCAGGATACC
Statistics
Matches: 129, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
77 8 0.06
78 12 0.09
79 80 0.62
80 29 0.22
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAAAATAGAAATAAAAATACCTC
AGCGTGTGACCCG
Found at i:107275382 original size:91 final size:92
Alignment explanation
Indices: 107275210--107275387 Score: 207
Period size: 91 Copynumber: 1.9 Consensus size: 92
107275200 ATGTTAATAC
** *
107275210 CAAGTACTATAATAAAACACACATTCATAGTTTATTTACTAAATTGGACATTTTCAAAGTACAAC
1 CAAGTACTATAATAAAACACACATTCATAGTTTAGGTACTAAATTAGACATTTTCAAAGTACAAC
* **
107275275 TACCATATTGGGCATTTTATAAAAGTA
66 TACCACATTGAACATTTTATAAAAGTA
* * * * *
107275302 CAAGTAC-ATAATAAAACACATATTGATATTTTAGGTA-TCACATTAGACATTTTCAAAGTACAT
1 CAAGTACTATAATAAAACACACATTCATAGTTTAGGTACT-AAATTAGACATTTTCAAAGTACAA
* **
107275365 GTATTACATTGAACATTTTATAA
65 CTACCACATTGAACATTTTATAA
107275388 GAATGCATAT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
90 1 0.01
91 63 0.89
92 7 0.10
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.35
Consensus pattern (92 bp):
CAAGTACTATAATAAAACACACATTCATAGTTTAGGTACTAAATTAGACATTTTCAAAGTACAAC
TACCACATTGAACATTTTATAAAAGTA
Found at i:107275749 original size:35 final size:35
Alignment explanation
Indices: 107275703--107275773 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
107275693 CCTAAGTCGG
107275703 GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
1 GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
* *
107275738 GCAGAGCAAAGAAATAGGCTAAATTAATAGTATAT
1 GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
107275773 G
1 G
107275774 TTATTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21
Consensus pattern (35 bp):
GCAGAGCAAAGAAACAGGCTAAATTAATACTATAT
Found at i:107276499 original size:16 final size:16
Alignment explanation
Indices: 107276478--107276511 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107276468 CAAATTTTGG
107276478 TTTATTTAATTTAATT
1 TTTATTTAATTTAATT
* *
107276494 TTTATTTTATTTAGTT
1 TTTATTTAATTTAATT
107276510 TT
1 TT
107276512 CCACGTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTATTTAATTTAATT
Done.