Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 350 of 770
Found at i:107281016 original size:26 final size:26
Alignment explanation
Indices: 107280987--107281042 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
107280977 TGATAAAAAT
107280987 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107281013 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107281039 TGAT
1 TGAT
107281043 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107282245 original size:8 final size:8
Alignment explanation
Indices: 107282222--107282257 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
107282212 CTAGATCGGC
*
107282222 AAAAGCCA
1 AAAAGCCG
107282230 AAAAGCCG
1 AAAAGCCG
107282238 AAAAGCCG
1 AAAAGCCG
*
107282246 AAATGCCG
1 AAAAGCCG
107282254 AAAA
1 AAAA
107282258 CCGGTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.56, C:0.22, G:0.19, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:107282569 original size:26 final size:26
Alignment explanation
Indices: 107282540--107282591 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
107282530 ACAGTTTTAT
*
107282540 CCCTCGGAGATAAATT-ACCGAAATAC
1 CCCTAGGA-ATAAATTGACCGAAATAC
* *
107282566 CCCTAGGATTAAATTGACCTAAATAC
1 CCCTAGGAATAAATTGACCGAAATAC
107282592 ATGTTTGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.23
Consensus pattern (26 bp):
CCCTAGGAATAAATTGACCGAAATAC
Found at i:107287940 original size:2 final size:2
Alignment explanation
Indices: 107287933--107287966 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
107287923 AAATTATTTG
107287933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107287967 CATCTGCTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107290253 original size:2 final size:2
Alignment explanation
Indices: 107290241--107290282 Score: 59
Period size: 2 Copynumber: 20.5 Consensus size: 2
107290231 TATAAGTTGG
107290241 AT AT CAT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT ACT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
107290283 GCAATTTGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 1 0.03
2 32 0.86
3 4 0.11
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107290264 original size:15 final size:15
Alignment explanation
Indices: 107290241--107290274 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
107290231 TATAAGTTGG
107290241 ATATCATATATATAT
1 ATATCATATATATAT
*
107290256 ATATTATATATATAT
1 ATATCATATATATAT
107290271 ATAT
1 ATAT
107290275 ATACTATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATCATATATATAT
Found at i:107290282 original size:15 final size:14
Alignment explanation
Indices: 107290241--107290282 Score: 59
Period size: 13 Copynumber: 2.9 Consensus size: 14
107290231 TATAAGTTGG
107290241 ATATCATATATATAT
1 ATAT-ATATATATAT
107290256 ATAT-TATATATAT
1 ATATATATATATAT
107290269 ATATATATACTATA
1 ATATATATA-TATA
107290283 GCAATTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.52
14 4 0.16
15 8 0.32
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATATATATATAT
Found at i:107294480 original size:27 final size:26
Alignment explanation
Indices: 107294422--107294529 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
107294412 GCGAGGCTAC
* * *
107294422 CAGATATTGTGACA-AGTCACCAGATA
1 CAGATAATGTGGCAGAGCCACCAGA-A
107294448 CAGATAATCGTGGCAGAGCCACCAGAA
1 CAGATAAT-GTGGCAGAGCCACCAGAA
*
107294475 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATA-ATGTGGCAGAGCCACCAGAA
* *
107294502 CAGATATTTGTGGCATAGCCACCAGAA
1 CAGATA-ATGTGGCAGAGCCACCAGAA
107294529 C
1 C
107294530 GCTTCCTCCA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.10
27 54 0.75
28 11 0.15
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATAATGTGGCAGAGCCACCAGAA
Found at i:107294515 original size:54 final size:53
Alignment explanation
Indices: 107294422--107294529 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 53
107294412 GCGAGGCTAC
*
107294422 CAGATATTGTGACAAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAGAA
1 CAGATATTGTGACAAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAA
* * * *
107294475 CAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCATAGCCACCAGAA
1 CAGATAT-TGTGACA-AGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAA
107294529 C
1 C
107294530 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
53 7 0.15
54 31 0.65
55 10 0.21
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGACAAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAA
Found at i:107296239 original size:25 final size:26
Alignment explanation
Indices: 107296145--107296253 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
107296135 CATGAAATTC
107296145 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
107296171 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107296197 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
107296223 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
107296248 TTATCA
1 TTATCA
107296254 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:107297334 original size:4 final size:4
Alignment explanation
Indices: 107297325--107297350 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
107297315 CAAGGAGCAA
107297325 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
107297351 CATATATGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:107298216 original size:2 final size:2
Alignment explanation
Indices: 107298209--107298247 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
107298199 AATGTTTAAA
* *
107298209 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107298248 CATGTAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:107298350 original size:2 final size:2
Alignment explanation
Indices: 107298343--107298371 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
107298333 TTAAAAGAAA
107298343 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
107298372 GATTTAGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107301683 original size:26 final size:26
Alignment explanation
Indices: 107301647--107301781 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
107301637 ACATGAATTC
107301647 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
107301673 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107301699 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
107301725 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107301750 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
107301776 TTATCA
1 TTATCA
107301782 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:107301758 original size:51 final size:52
Alignment explanation
Indices: 107301647--107301781 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
107301637 ACATGAATTC
* *
107301647 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
107301699 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
107301750 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
107301782 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 49 0.60
52 32 0.40
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:107305909 original size:25 final size:26
Alignment explanation
Indices: 107305872--107305923 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
107305862 TCAAACATGC
*
107305872 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACACTAGGGGT
* *
107305898 ATTTCGGT-AATTTATCACTAGGGGT
1 ATTTAGGTCAATTTAACACTAGGGGT
107305923 A
1 A
107305924 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACACTAGGGGT
Found at i:107307439 original size:26 final size:26
Alignment explanation
Indices: 107307403--107307537 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
107307393 ACATGAATTC
107307403 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
107307429 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107307455 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
107307481 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
107307506 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
107307532 TTATCA
1 TTATCA
107307538 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:107310234 original size:38 final size:40
Alignment explanation
Indices: 107310063--107310238 Score: 171
Period size: 40 Copynumber: 4.5 Consensus size: 40
107310053 ACCAAGGCCA
* * * * * *
107310063 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
107310102 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
107310142 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
107310182 CGGGTCTTAACCCGGATA-AATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
107310220 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
107310239 CATTCAATTT
Statistics
Matches: 116, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
38 28 0.24
39 13 0.11
40 73 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:107318139 original size:40 final size:40
Alignment explanation
Indices: 107318080--107318248 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
107318070 CGGGACTTTA
* * *
107318080 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
107318120 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
107318160 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
107318200 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
107318240 CCCGGATAT
1 CCCGGATAT
107318249 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:107325874 original size:41 final size:40
Alignment explanation
Indices: 107325802--107326011 Score: 282
Period size: 39 Copynumber: 5.3 Consensus size: 40
107325792 GACTAGCTCA
* *
107325802 AATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGGTT-TAGTAACTCGCACG
107325842 AATGCCTTCGGGACTTAACCCGGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGGTT-TAGTAACTCGCACG
* *
107325883 AATGCCTTCGGGACTTAACCCGAGTTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
* * *
107325923 AATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
* * *
107325962 AATGCCTTCGGG-CTTAACCTGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
*
107326001 AACGCCTTCGG
1 AATGCCTTCGG
107326012 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 71 0.45
40 39 0.25
41 49 0.31
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACG
Found at i:107325955 original size:39 final size:40
Alignment explanation
Indices: 107325800--107326064 Score: 274
Period size: 40 Copynumber: 6.7 Consensus size: 40
107325790 ACGACTAGCT
*
107325800 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
* *
107325840 CGAATGCCTTCGGGACTTAACCCGGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
107325881 CGAATGCCTTCGGGACTTAACCC-GAGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGA-TTTAGTAACTCGCA
*
107325921 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
107325960 CAAATGCCTTCGGG-CTTAACCTGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
107325999 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
107326040 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
107326065 CATCATTCAA
Statistics
Matches: 198, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 68 0.34
40 77 0.39
41 51 0.26
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:107329180 original size:2 final size:2
Alignment explanation
Indices: 107329173--107329198 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
107329163 TCATCATGTC
107329173 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
107329199 TTACCTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107331650 original size:38 final size:38
Alignment explanation
Indices: 107331594--107331667 Score: 87
Period size: 38 Copynumber: 1.9 Consensus size: 38
107331584 CTTATATATC
* * *
107331594 GTCAACAAGGTTTTGCCTCGAAGGA-CAAGTAGATAACT
1 GTCAACAAGGTATCGCCTCAAAGGACCAA-TAGATAACT
* *
107331632 GTCAACAGGGTATCGCCTCAAATGACCAATAGATAA
1 GTCAACAAGGTATCGCCTCAAAGGACCAATAGATAA
107331668 TCGCCCCCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 27 0.90
39 3 0.10
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (38 bp):
GTCAACAAGGTATCGCCTCAAAGGACCAATAGATAACT
Found at i:107349382 original size:40 final size:40
Alignment explanation
Indices: 107349181--107349368 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
107349171 TATTCGGATG
* * *
107349181 ATAACCGGGCTAAGTCCCGAAGGCATTTCTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
107349221 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
107349260 ATATCTGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
107349300 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
107349340 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
107349369 AGCAAGTAGC
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 34 0.25
40 100 0.75
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:107349382 original size:80 final size:79
Alignment explanation
Indices: 107349181--107349391 Score: 277
Period size: 80 Copynumber: 2.7 Consensus size: 79
107349171 TATTCGGATG
* *
107349181 ATAACCGGGCTAAGTCCCGAAGGCATTTCTGCTAGT-GACTA-ATTCCGGGCTAAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGCCCGAAGGC
*
107349244 ATTTGTGCGAGTTACT
64 ACTTGTGCGAGTTACT
* * * * *
107349260 ATATCTGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAG-CCCGAAGGC
107349324 ACTTGTGCGAGTTACT
64 ACTTGTGCGAGTTACT
*
107349340 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAA
107349392 ATTCCAAAGG
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
79 51 0.45
80 63 0.55
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGCCCGAAGGCAC
TTGTGCGAGTTACT
Found at i:107357866 original size:17 final size:19
Alignment explanation
Indices: 107357838--107357876 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
107357828 TAATATGACC
*
107357838 CAAGTGGGCCC-ATATGCT
1 CAAGTGGGCCCAATAAGCT
107357856 CAAGT-GGCCCAATAAGCT
1 CAAGTGGGCCCAATAAGCT
107357874 CAA
1 CAA
107357877 TTAATGGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (19 bp):
CAAGTGGGCCCAATAAGCT
Found at i:107360364 original size:23 final size:22
Alignment explanation
Indices: 107360334--107360376 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
107360324 TTATGTAACA
*
107360334 TATGTTTTGGTATGACTTTGGCT
1 TATGTTTTGGCATGA-TTTGGCT
107360357 TATGTTTTGGCATGATTTGG
1 TATGTTTTGGCATGATTTGG
107360377 ATATGGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.14, C:0.07, G:0.28, T:0.51
Consensus pattern (22 bp):
TATGTTTTGGCATGATTTGGCT
Found at i:107364678 original size:20 final size:19
Alignment explanation
Indices: 107364645--107364683 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
107364635 TGAGAGCACG
107364645 AAAGACCACTCATTCCAATT
1 AAAGACCACTCATT-CAATT
107364665 AAAGTACCAC-CATTCAATT
1 AAAG-ACCACTCATTCAATT
107364684 CCAAGGTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 8 0.44
21 5 0.28
ACGTcount: A:0.41, C:0.28, G:0.05, T:0.26
Consensus pattern (19 bp):
AAAGACCACTCATTCAATT
Found at i:107366314 original size:38 final size:41
Alignment explanation
Indices: 107366272--107366351 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 41
107366262 TTATCCTAGA
107366272 AAAAAAGAATTT-AAA-A-AGAATATAATCTTAGGTTGTTG
1 AAAAAAGAATTTAAAATAGAGAATATAATCTTAGGTTGTTG
*
107366310 AAAAAGGAATTTAAAAATAGGAGAATATAATCTTAGGTTGTT
1 AAAAAAGAATTT-AAAATA-GAGAATATAATCTTAGGTTGTT
107366352 AGATTTATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
38 11 0.31
40 3 0.08
41 1 0.03
43 21 0.58
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.31
Consensus pattern (41 bp):
AAAAAAGAATTTAAAATAGAGAATATAATCTTAGGTTGTTG
Found at i:107373608 original size:93 final size:93
Alignment explanation
Indices: 107373496--107373667 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
107373486 GCCCATAAGT
* *
107373496 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
107373561 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
107373589 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
107373654 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
107373668 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:107373663 original size:46 final size:46
Alignment explanation
Indices: 107373488--107373663 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
107373478 TGTAACCCGC
* * *
107373488 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
107373534 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
107373584 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
107373627 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
107373664 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:107376088 original size:30 final size:30
Alignment explanation
Indices: 107376044--107376132 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
107376034 CAAAGATAAC
107376044 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
107376073 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
107376103 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
107376133 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:107376092 original size:15 final size:15
Alignment explanation
Indices: 107376044--107376123 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
107376034 CAAAGATAAC
*
107376044 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
107376058 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
107376073 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
107376088 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
107376103 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
107376118 AAGAAA
1 AAGAAA
107376124 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:107376132 original size:15 final size:15
Alignment explanation
Indices: 107376055--107376132 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
107376045 AGAAAACCGA
107376055 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
107376070 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
107376084 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
107376099 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
107376115 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
107376130 ATA
1 ATA
107376133 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:107382390 original size:27 final size:28
Alignment explanation
Indices: 107382360--107382459 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
107382350 ATAGTGAGTC
107382360 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
107382387 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
107382415 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
107382446 CGCACACTTAGTGC
1 CGCACACTTAGTGC
107382460 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:107383312 original size:7 final size:7
Alignment explanation
Indices: 107383302--107383326 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
107383292 TCATCACCAC
107383302 AACATCA
1 AACATCA
107383309 AACATCA
1 AACATCA
107383316 AACATCA
1 AACATCA
107383323 AACA
1 AACA
107383327 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:107393971 original size:40 final size:39
Alignment explanation
Indices: 107393844--107393973 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
107393834 ATGCTGGAAA
* *
107393844 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
107393884 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
107393924 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
107393964 TTATATCCGG
1 TTATATCCGG
107393974 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:107398764 original size:41 final size:41
Alignment explanation
Indices: 107398719--107398836 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
107398709 TGAAAGATAA
107398719 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
107398760 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
107398790 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
107398831 ATGTAG
1 ATGTAG
107398837 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:107398775 original size:71 final size:71
Alignment explanation
Indices: 107398687--107398850 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
107398677 GAGATGTATC
107398687 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
107398752 AGGACA
66 AGGACA
107398758 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
107398823 AGGACA
66 AGGACA
107398829 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
107398851 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:107406365 original size:70 final size:71
Alignment explanation
Indices: 107406215--107406377 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
107406205 GAGATGTATC
107406215 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
107406280 AGGACA
66 AGGACA
107406286 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
107406350 AGGACA
66 AGGACA
107406356 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
107406378 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:107407777 original size:46 final size:48
Alignment explanation
Indices: 107407651--107407784 Score: 163
Period size: 46 Copynumber: 2.9 Consensus size: 48
107407641 GGGTGTTACA
107407651 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTT
* * * *
107407701 ACAT--TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TT
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
107407743 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
107407785 TGCTTAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 1 0.01
45 2 0.03
46 29 0.40
47 29 0.40
48 2 0.03
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT
Found at i:107407803 original size:46 final size:46
Alignment explanation
Indices: 107407652--107407803 Score: 147
Period size: 46 Copynumber: 3.3 Consensus size: 46
107407642 GGTGTTACAG
107407652 CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-
1 CATCC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-C---TTAC
* * *
107407702 CAT-TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATT-C
1 CATCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TTAC
107407744 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAAC
1 -CATCC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTT-AC
107407793 CATCCT-AGTGA
1 CATCCTAAGTGA
107407804 CATGTCACTT
Statistics
Matches: 86, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 34 0.40
47 32 0.37
48 8 0.09
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (46 bp):
CATCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAC
Found at i:107408244 original size:30 final size:30
Alignment explanation
Indices: 107408210--107408269 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
107408200 ATTTAATACG
107408210 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
107408240 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
107408270 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:107409647 original size:40 final size:40
Alignment explanation
Indices: 107409569--107409733 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
107409559 CTTTAAGCCA
* *
107409569 GGATATA-A-TACCAGCACTAAGCCTGCGGGATTTAACCC
1 GGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCC
107409607 GGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCC
1 GGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCC
* *
107409647 GGATATACATTACCAGCACGAAGCCTACGGGATTTGACCT
1 GGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCC
* *
107409687 GGATATACATTACCAGCAAGAAGCCTGCGGGATTTGACTC
1 GGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCC
*
107409727 AGATATA
1 GGATATA
107409734 TATAATATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 7 0.06
39 1 0.01
40 108 0.93
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (40 bp):
GGATATACATTACCAGCACGAAGCCTGCGGGATTTGACCC
Found at i:107415315 original size:31 final size:31
Alignment explanation
Indices: 107415277--107415338 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
107415267 AGCGTGACTA
* *
107415277 AGCCTCCGGTTGATAAGATTCGAAAGCATGG
1 AGCCTCCGGTTGATAAGATCCAAAAGCATGG
*
107415308 AGCCTCCGGTTGGTAAGATCCAAAAGCATGG
1 AGCCTCCGGTTGATAAGATCCAAAAGCATGG
107415339 GGCTGAAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (31 bp):
AGCCTCCGGTTGATAAGATCCAAAAGCATGG
Found at i:107430066 original size:30 final size:30
Alignment explanation
Indices: 107429979--107430059 Score: 135
Period size: 30 Copynumber: 2.7 Consensus size: 30
107429969 TTTCCGAGCA
* *
107429979 TAGGGGTAAAATGGTTATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
*
107430009 GAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
107430039 TAGGGGCAAAATGGTCATTTT
1 TAGGGGCAAAATGGTCATTTT
107430060 ACCAAAGATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGTCAAAGTC
Found at i:107437635 original size:43 final size:40
Alignment explanation
Indices: 107437535--107437638 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
107437525 CTTACCGGCT
* *
107437535 AAAATGACACTTAGTGTGCAGTTCGAAATAGCTTCAGCTA
1 AAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCAGCTA
* * * * *
107437575 AAAGTGGCACTTGGTGTGCAATTTGAGATAGCTTCGGCTA
1 AAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCAGCTA
107437615 TATATAATGGCACTTAGTGTGCAA
1 -A-A-AATGGCACTTAGTGTGCAA
107437639 AGTATCGAGG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
40 33 0.63
41 1 0.02
42 1 0.02
43 17 0.33
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (40 bp):
AAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCAGCTA
Found at i:107437683 original size:28 final size:28
Alignment explanation
Indices: 107437618--107437692 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
107437608 TCGGCTATAT
** *
107437618 ATAATGGCACTTAGTGTGCAAAGTATCG
1 ATAATGGCACTTAGTGTGCAAAACATCC
**
107437646 AGGATGGCACTTAGTGTGCAAAACATCC
1 ATAATGGCACTTAGTGTGCAAAACATCC
* *
107437674 ATAATAGCACTTAGCGTGC
1 ATAATGGCACTTAGTGTGC
107437693 GAGGTATCGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (28 bp):
ATAATGGCACTTAGTGTGCAAAACATCC
Found at i:107444203 original size:3 final size:3
Alignment explanation
Indices: 107444195--107444223 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
107444185 TTACTTTATT
107444195 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
107444224 TAAAACCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:107449510 original size:3 final size:3
Alignment explanation
Indices: 107449502--107449526 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
107449492 GCTAATTGAC
107449502 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
107449527 TTAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:107451575 original size:16 final size:15
Alignment explanation
Indices: 107451556--107451586 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
107451546 TATTAACATA
107451556 ATATATTAATAATATC
1 ATATATTAA-AATATC
107451572 ATATATTAAAATATC
1 ATATATTAAAATATC
107451587 TTTCACTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATATTAAAATATC
Found at i:107451870 original size:17 final size:17
Alignment explanation
Indices: 107451850--107451883 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
107451840 ATTCACTAAT
*
107451850 ATAATATTAAATAAATA
1 ATAATAATAAATAAATA
*
107451867 ATAATAATCAATAAATA
1 ATAATAATAAATAAATA
107451884 TCTTTTACTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATAATAAATAAATA
Found at i:107452003 original size:3 final size:3
Alignment explanation
Indices: 107451995--107452044 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
107451985 TTACTTTAGT
107451995 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
107452043 TA
1 TA
107452045 TAAAACCATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:107452891 original size:44 final size:42
Alignment explanation
Indices: 107452826--107452964 Score: 140
Period size: 44 Copynumber: 3.2 Consensus size: 42
107452816 TATGTTATCG
* *
107452826 TGTAAGACCACGTTTGAGACGTTGGCATCGACTTATGATTTACA
1 TGTAAGACCATGTTTGGGACGTTGGCATCGA-TT-TGATTTACA
*
107452870 TGTAAGACCATGTTTGGGACGTTGGCATCGTATTTGATTT-CG
1 TGTAAGACCATGTTTGGGACGTTGGCATCG-ATTTGATTTACA
* * * *
107452912 TGTAAGACCCTATCTGGGACAG-TGGCATCGATATTTGA-TTATA
1 TGTAAGACCATGTTTGGGAC-GTTGGCATCG--ATTTGATTTACA
107452955 TGTAAGACCA
1 TGTAAGACCA
107452965 CGTCTGAGAC
Statistics
Matches: 82, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
42 28 0.34
43 23 0.28
44 30 0.37
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTTTGGGACGTTGGCATCGATTTGATTTACA
Found at i:107452947 original size:43 final size:44
Alignment explanation
Indices: 107452843--107452964 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 44
107452833 CCACGTTTGA
* * *
107452843 GACGTTGGCATCGACT-TATGATTTACATGTAAGACCATGTTTGG
1 GACGTTGGCATCGA-TATTTGATTTACATGTAAGACCATATCTGG
* *
107452887 GACGTTGGCATCG-TATTTGATTT-CGTGTAAGACCCTATCTGG
1 GACGTTGGCATCGATATTTGATTTACATGTAAGACCATATCTGG
*
107452929 GACAG-TGGCATCGATATTTGA-TTATATGTAAGACCA
1 GAC-GTTGGCATCGATATTTGATTTACATGTAAGACCA
107452965 CGTCTGAGAC
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
42 29 0.44
43 24 0.36
44 13 0.20
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (44 bp):
GACGTTGGCATCGATATTTGATTTACATGTAAGACCATATCTGG
Found at i:107455639 original size:93 final size:93
Alignment explanation
Indices: 107455527--107455698 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
107455517 GCCCATAAGT
* *
107455527 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
107455592 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
107455620 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
107455685 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
107455699 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:107455694 original size:46 final size:46
Alignment explanation
Indices: 107455519--107455694 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
107455509 TGTAACCCGC
* * *
107455519 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
107455565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
107455615 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
107455658 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
107455695 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:107464714 original size:98 final size:95
Alignment explanation
Indices: 107464528--107464839 Score: 326
Period size: 98 Copynumber: 3.3 Consensus size: 95
107464518 ATGCTAATGC
* * *
107464528 CATGTTCCAAACATGGTCTTACACTGGCTCACATATCTAA-GTTGATGCCATGTCCTAGACAGGT
1 CATGTCCCAGACA-GGTCTTACACTGGCTCTCATATC-AATGTTGATGCCATGTCCTAGACAGGT
*
107464592 CTTACACTAGCTTTCATATATCGAGGCCAACG
64 CTTACACTAGCTTGCATATATCGAGGCCAACG
* * ** *
107464624 CCATGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCGGTGTTGATGCCATGTCCTAGACAAG
1 -CATGTCCCAGACAGGTCTTACACTGGCTCTCA--TATCAATGTTGATGCCATGTCCTAGACAGG
* * *
107464689 TCTTACACTAGCTTGCATATCTCGAGGCCGATG
63 TCTTACACTAGCTTGCATATATCGAGGCCAACG
* * * **
107464722 CATGTCCCAGACATGTCTTACACTAGCTCTCATATTAATGCAGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACAGGTCTTACACTGGCTCTCATATCAATGTTGATGCCATGTCCTAGACA-GGTC
* * * *
107464787 TTACACTGGCTCT-CATA-AT-GTGGCCGATG
65 TTACACTAGCT-TGCATATATCGAGGCCAACG
* *
107464816 CATGTCCCGGACATGTCTTACACT
1 CATGTCCCAGACAGGTCTTACACT
107464840 AGCACACATC
Statistics
Matches: 184, Mismatches: 26, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
94 32 0.17
95 24 0.13
96 35 0.19
97 38 0.21
98 55 0.30
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (95 bp):
CATGTCCCAGACAGGTCTTACACTGGCTCTCATATCAATGTTGATGCCATGTCCTAGACAGGTCT
TACACTAGCTTGCATATATCGAGGCCAACG
Found at i:107464740 original size:48 final size:49
Alignment explanation
Indices: 107464571--107464842 Score: 281
Period size: 49 Copynumber: 5.7 Consensus size: 49
107464561 TATCTAAGTT
* *
107464571 GATGCCATGTCCTAGACAGGTCTTACACTAGCTTTCATATATCGAGGCC
1 GATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATATATCGAGGCC
* * * * * * **
107464620 AACGCCATGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCG-GTGTT
1 GATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATATATCGAG-GCC
* *
107464669 GATGCCATGTCCTAGACAAGTCTTACACTAGCT-TGCATATCTCGAGGCC
1 GATGCCATGTCCTAGACATGTCTTACACTAGCTCT-CATATATCGAGGCC
* * * *
107464718 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-T-AATGCA
1 GATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATATATCGAGGCC
* *
107464764 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-AT-GTGGCC
1 GATGCCATGTCCTAGACAT-GTCTTACACTAGCTCTCATATATCGAGGCC
**
107464812 GATG-CATGTCCCGGACATGTCTTACACTAGC
1 GATGCCATGTCCTAGACATGTCTTACACTAGC
107464843 ACACATCCAT
Statistics
Matches: 185, Mismatches: 31, Indels: 17
0.79 0.13 0.07
Matches are distributed among these distances:
46 19 0.10
47 26 0.14
48 59 0.32
49 80 0.43
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCTAGACATGTCTTACACTAGCTCTCATATATCGAGGCC
Found at i:107465539 original size:20 final size:18
Alignment explanation
Indices: 107465502--107465544 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
107465492 CTATAACAAC
107465502 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
107465519 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
107465539 TTACAA
1 TCACAA
107465545 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:107467480 original size:40 final size:40
Alignment explanation
Indices: 107467436--107467514 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
107467426 TTTCTTATCG
107467436 AGGAACCTCTGACTTACATATTTCTTT-TAGAACTATGTCA
1 AGGAACCTCTGACTTACATATTTCTTTCT-GAACTATGTCA
107467476 AGGAACCTCTGACTTACATATTTCTTTCTGAACTATGTC
1 AGGAACCTCTGACTTACATATTTCTTTCTGAACTATGTC
107467515 TGGAAGATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.38
Consensus pattern (40 bp):
AGGAACCTCTGACTTACATATTTCTTTCTGAACTATGTCA
Found at i:107472322 original size:39 final size:39
Alignment explanation
Indices: 107472225--107472413 Score: 159
Period size: 40 Copynumber: 4.8 Consensus size: 39
107472215 AATGATGTCT
* * * *
107472225 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AACC
* * * *
107472265 GGACTAGGAT-CCGAAGGCATTCATGCGAGTTAATAAATCC
1 GGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA-CC
* *
107472305 GGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAACTC
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAC-C
* *
107472344 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAACC
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AACC
** * *
107472384 GGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGT
107472414 CGTTATATCC
Statistics
Matches: 119, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
39 32 0.27
40 77 0.65
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAACC
Found at i:107478003 original size:40 final size:39
Alignment explanation
Indices: 107477958--107478087 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
107477948 CGGAATACAA
107477958 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
107477998 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
107478038 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
107478078 CCGGATATAA
1 CCGGATATAA
107478088 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:107488000 original size:24 final size:24
Alignment explanation
Indices: 107487970--107488188 Score: 375
Period size: 24 Copynumber: 9.1 Consensus size: 24
107487960 GAATGTGACT
* *
107487970 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
107487994 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107488018 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107488042 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107488066 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107488090 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107488114 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107488138 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107488162 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107488186 ATA
1 ATA
107488189 TGGTCTTTGC
Statistics
Matches: 190, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 190 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:107495982 original size:24 final size:24
Alignment explanation
Indices: 107495952--107496170 Score: 375
Period size: 24 Copynumber: 9.1 Consensus size: 24
107495942 GAATGTGACT
* *
107495952 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
107495976 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107496000 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107496024 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107496048 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107496072 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107496096 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107496120 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
107496144 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
107496168 ATA
1 ATA
107496171 TGGTCTTTGC
Statistics
Matches: 190, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 190 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:107502589 original size:14 final size:14
Alignment explanation
Indices: 107502570--107502596 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107502560 TATTAAAATA
107502570 ATAATTAAGAACAC
1 ATAATTAAGAACAC
107502584 ATAATTAAGAACA
1 ATAATTAAGAACA
107502597 AATCAAGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:107504537 original size:47 final size:45
Alignment explanation
Indices: 107504466--107504625 Score: 160
Period size: 47 Copynumber: 3.4 Consensus size: 45
107504456 GGTAAGGTGC
*
107504466 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCT-ATATCTCATGT
* * * * *
107504513 CGATGCCATGACCTAGACATGGTCTTATACTAACTATCATCCCATAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTAT-ATCTCAT-GT
* * * *
107504561 CAATGCATGTCCCAGACAT-GTCTTACACTGGCTTATTTCTCGAGGT
1 CGATGCATGTCCCAGACATGGTCTTACACTAGC-TATATCTC-ATGT
107504607 CGATGCATGTCCCAGACAT
1 CGATGCATGTCCCAGACAT
107504626 ACTAACACTA
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
46 35 0.38
47 52 0.56
48 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCTATATCTCATGT
Found at i:107521250 original size:29 final size:29
Alignment explanation
Indices: 107521217--107521376 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
107521207 GTGACGAGAT
107521217 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
107521246 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
107521275 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
107521304 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
107521333 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
107521362 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
107521377 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:107529421 original size:29 final size:29
Alignment explanation
Indices: 107529388--107529547 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
107529378 GTGACGAGAT
107529388 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
107529417 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
107529446 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
107529475 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
107529504 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
107529533 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
107529548 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:107532460 original size:40 final size:40
Alignment explanation
Indices: 107532386--107532595 Score: 266
Period size: 40 Copynumber: 5.3 Consensus size: 40
107532376 CCTTCGGAAT
** * *
107532386 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
107532424 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
107532464 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
107532504 TTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
107532544 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTT-GGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
107532583 TTAGCCCGGATAT
1 TTAGCCCGGATAT
107532596 CATTCGAATA
Statistics
Matches: 149, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 4 0.03
39 31 0.21
40 113 0.76
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:107540457 original size:40 final size:40
Alignment explanation
Indices: 107540375--107540593 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
107540365 AAACCAAGTA
* ** * *
107540375 CTTCGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
107540412 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
107540452 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
107540492 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
107540532 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
107540572 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
107540594 CATTCGAATA
Statistics
Matches: 155, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
37 7 0.05
38 4 0.03
39 16 0.10
40 127 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:107540550 original size:120 final size:117
Alignment explanation
Indices: 107540375--107540593 Score: 339
Period size: 120 Copynumber: 1.8 Consensus size: 117
107540365 AAACCAAGTA
* * *
107540375 CTTCGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCAC
1 CTTCGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCAC
*
107540440 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
66 TAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
* * * *
107540492 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
1 CTTCGGAT-TTAG-CCGGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAGT
107540557 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
63 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
107540594 CATTCGAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
117 7 0.08
118 4 0.04
119 18 0.20
120 62 0.68
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (117 bp):
CTTCGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCAC
TAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
Found at i:107545241 original size:12 final size:11
Alignment explanation
Indices: 107545213--107545287 Score: 64
Period size: 12 Copynumber: 6.6 Consensus size: 11
107545203 TCAAAATAGG
107545213 AAAA-AAAATA
1 AAAATAAAATA
* *
107545223 GACATAAAATGA
1 AAAATAAAAT-A
107545235 AAAATAAAAATA
1 AAAAT-AAAATA
*
107545247 AAAA-AAGATA
1 AAAATAAAATA
107545257 AAAATAAAAATA
1 AAAAT-AAAATA
*
107545269 AACATAAACATA
1 AAAATAAA-ATA
107545281 AAAATAA
1 AAAATAA
107545288 TCGGACTCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
10 11 0.22
11 8 0.16
12 27 0.53
13 5 0.10
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:107545243 original size:6 final size:6
Alignment explanation
Indices: 107545228--107545287 Score: 70
Period size: 6 Copynumber: 10.2 Consensus size: 6
107545218 AAATAGACAT
* *
107545228 AAAATGA AAAATA AAAAT- AAAA-A AAGATA AAAATA AAAATA AACATA
1 AAAAT-A AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
107545275 AACATA AAAATA A
1 AAAATA AAAATA A
107545288 TCGGACTCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
5 7 0.15
6 35 0.74
7 5 0.11
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:107545247 original size:18 final size:17
Alignment explanation
Indices: 107545235--107545287 Score: 72
Period size: 16 Copynumber: 3.1 Consensus size: 17
107545225 CATAAAATGA
107545235 AAAATAAAAATAAAAA-
1 AAAATAAAAATAAAAAT
*
107545251 AAGATAAAAATAAAAAT
1 AAAATAAAAATAAAAAT
*
107545268 AAACATAAACATAAAAAT
1 AAA-ATAAAAATAAAAAT
107545286 AA
1 AA
107545288 TCGGACTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
16 15 0.47
17 2 0.06
18 15 0.47
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (17 bp):
AAAATAAAAATAAAAAT
Found at i:107545264 original size:34 final size:33
Alignment explanation
Indices: 107545213--107545284 Score: 83
Period size: 34 Copynumber: 2.2 Consensus size: 33
107545203 TCAAAATAGG
* *
107545213 AAAAAAAATAGACAT-AAAATGAAAAATAAAAAT
1 AAAAAAAATAAAAATAAAAAT-AAAAATAAAAAT
* *
107545246 AAAAAAAGATAAAAATAAAAATAAACATAAACAT
1 AAAAAAA-ATAAAAATAAAAATAAAAATAAAAAT
107545280 AAAAA
1 AAAAA
107545285 TAATCGGACT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 7 0.21
34 21 0.64
35 5 0.15
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.14
Consensus pattern (33 bp):
AAAAAAAATAAAAATAAAAATAAAAATAAAAAT
Found at i:107551919 original size:50 final size:51
Alignment explanation
Indices: 107551780--107551999 Score: 174
Period size: 51 Copynumber: 4.3 Consensus size: 51
107551770 GTTGTGAGAA
* * ***
107551780 CACATGTGTAGTACTATGTACAGGCTACTATGTATTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCAAATGG-TTTAGGT
* ** * *
107551832 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCAAATGGTTTAGGT
* * * * * * *
107551882 CGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCAATAGCTTCGAT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCAAATGGTTTAGGT
* * * * * * *
107551933 CACATGTATGGTACTAAGTGCAGGCCACTATGTGTA-AAAGATAGTTTTGGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCAA-ATGGTTTAGGT
* *
107551984 CACAAGTGTGGTACTA
1 CACATGTGTAGTACTA
107552000 TGTGAAGGCC
Statistics
Matches: 132, Mismatches: 34, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
50 42 0.32
51 56 0.42
52 34 0.26
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCAAATGGTTTAGGT
Found at i:107552040 original size:51 final size:51
Alignment explanation
Indices: 107551941--107552062 Score: 131
Period size: 51 Copynumber: 2.4 Consensus size: 51
107551931 ATCACATGTA
* * * *
107551941 TGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGTTTTGGTCACAAGTG
1 TGGTACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGCTCACAAGGG
* * *
107551992 TGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGACT-ACAAGGG
1 TGGTACTATGTGCAGGCCACTATGTGTAA-AAGATAGCTTTG-CTCACAAGGG
**
107552043 TATTACTATGTGCAGGCCAC
1 TGGTACTATGTGCAGGCCAC
107552063 CGGGCATCCG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
50 2 0.03
51 56 0.95
52 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (51 bp):
TGGTACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGCTCACAAGGG
Found at i:107556631 original size:40 final size:40
Alignment explanation
Indices: 107556572--107556779 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
107556562 CAATTGAATG
* * * *
107556572 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
107556612 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
107556652 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
107556692 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
107556732 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
107556772 ATATCCGG
1 ATATCCGG
107556780 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:107556710 original size:80 final size:80
Alignment explanation
Indices: 107556574--107556779 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
107556564 ATTGAATGAT
* * ** * * *
107556574 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
107556638 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
107556654 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
107556719 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
107556734 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
107556780 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:107558381 original size:78 final size:81
Alignment explanation
Indices: 107558261--107558442 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
107558251 TACTCGTTCA
* *
107558261 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCAG
*
107558324 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
** *
107558340 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
* *
107558403 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
107558419 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
107558443 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 47 0.52
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
TTTAATAACTTAGCAC
Found at i:107558442 original size:40 final size:40
Alignment explanation
Indices: 107558259--107558442 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
107558249 GCTACTCGTT
*
107558259 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
107558299 CAAATGCCTTCGGGACTTAACCCAGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
107558339 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
107558377 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
107558418 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
107558443 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 67 0.54
41 13 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:107559582 original size:56 final size:53
Alignment explanation
Indices: 107559489--107559597 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
107559479 TATGAAAAAA
107559489 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
107559542 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
107559598 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:107560859 original size:40 final size:40
Alignment explanation
Indices: 107560793--107560959 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
107560783 AAATTGAATG
* * *
107560793 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
107560832 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
107560872 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
107560912 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
107560952 ATATCCGG
1 ATATCCGG
107560960 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:107567582 original size:56 final size:54
Alignment explanation
Indices: 107567488--107567597 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 54
107567478 TGAAAAAAAA
107567488 AAAGAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* ***
107567542 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA-ATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
107567598 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
54 8 0.17
55 7 0.15
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (54 bp):
AAAGAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:107568856 original size:40 final size:40
Alignment explanation
Indices: 107568790--107568956 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
107568780 AAATTGAATG
* * *
107568790 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
107568829 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
107568869 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
107568909 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
107568949 ATATCCGG
1 ATATCCGG
107568957 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:107575956 original size:46 final size:44
Alignment explanation
Indices: 107575743--107575959 Score: 163
Period size: 46 Copynumber: 4.7 Consensus size: 44
107575733 TTTGTGTGCT
* * *
107575743 AGTGTAAGACATGTCTGGGACATGCATCGG-TCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCT-ACGA-GATGTGA--C
* *
107575789 AGTGTAAGACCATGTCTAGGACATGGCATCGG-TATTGAGATGAGAAC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTA-CGAGATGTG-AC
* * * * *
107575836 TAGTGTAAGACATGTCTGGGATATACATCGACCT-CGAGATGTAAGCC
1 -AGTGTAAGACATGTCTAGGACATGCATCG-GCTACGAGATGT--GAC
* *
107575883 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGAC
*
107575927 AGTGTAAGACCATGTCTAGGAAATGGCATCGGC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
107575960 ACAGATATGT
Statistics
Matches: 142, Mismatches: 16, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 63 0.44
47 28 0.20
48 24 0.17
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGAC
Found at i:107585365 original size:40 final size:40
Alignment explanation
Indices: 107585310--107585487 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
107585300 TGGGTGATAA
* * *
107585310 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
107585350 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
107585390 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
107585430 TCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
107585470 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
107585488 TACGTGGCTT
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:107589471 original size:49 final size:49
Alignment explanation
Indices: 107589410--107589598 Score: 292
Period size: 49 Copynumber: 3.9 Consensus size: 49
107589400 GTATGAGATG
* **
107589410 TATATATGTGATACGAACTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
107589459 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
107589506 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
107589555 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
107589599 CATATGTGTG
Statistics
Matches: 128, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
47 43 0.34
49 85 0.66
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:107589573 original size:96 final size:96
Alignment explanation
Indices: 107589409--107589598 Score: 317
Period size: 96 Copynumber: 2.0 Consensus size: 96
107589399 TGTATGAGAT
*
107589409 GTATATATGTGATACGAACTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGAACTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
107589474 GCCTAATGGCCAATGTGATGAATGTGAAAGA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGA
** * * *
107589505 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGAACTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
*
107589570 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
107589599 CATATGTGTG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
GTATATATGTGATAAGAACTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:107589682 original size:123 final size:123
Alignment explanation
Indices: 107589555--107589800 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
107589545 TGAAGGTGTA
107589555 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
107589620 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
107589678 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
107589743 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
107589801 GAAGGGCTAA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.32
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:107589685 original size:18 final size:18
Alignment explanation
Indices: 107589662--107589697 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
107589652 GTGTGATATG
*
107589662 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
107589680 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
107589698 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:107589701 original size:66 final size:69
Alignment explanation
Indices: 107589614--107589752 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 69
107589604 GTGTGATATG
*
107589614 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
107589676 CCTA
66 CCTA
* *
107589680 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
107589745 GTAAAGCC
60 GTAAAGCC
107589753 GAATGGCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
66 19 0.31
67 1 0.02
74 1 0.02
75 40 0.66
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:107589767 original size:48 final size:48
Alignment explanation
Indices: 107589713--107589912 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
107589703 CGATGTGATG
*
107589713 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
107589761 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
107589809 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATAGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
107589857 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
107589905 AATGTGAA
1 AATGTGAA
107589913 TGTTGTAACA
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 146 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:107589811 original size:171 final size:172
Alignment explanation
Indices: 107589506--107589848 Score: 507
Period size: 171 Copynumber: 2.0 Consensus size: 172
107589496 TGTGAAAGAG
** *
107589506 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATATATATATATGTGATAAGG
* *
107589571 CCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGG
66 CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGG
107589636 CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
131 CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
* * *
107589678 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGT-ATAT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AACATATATAT-ATATGTGATAA
* * *
107589742 GTG-GTAA-AGCCGAATG-GCT-AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
64 G-GCCTAATAGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGA
*
107589803 AGGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
127 AGGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
107589849 GAATAGCTAA
Statistics
Matches: 155, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
171 85 0.55
172 47 0.30
173 16 0.10
174 7 0.05
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (172 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATATATATATATGTGATAAGG
CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGG
CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:107590006 original size:37 final size:37
Alignment explanation
Indices: 107589952--107590042 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
107589942 AACTTGGAAA
*
107589952 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
107589990 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
107590027 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
107590043 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:107594438 original size:45 final size:44
Alignment explanation
Indices: 107594382--107594546 Score: 147
Period size: 45 Copynumber: 3.6 Consensus size: 44
107594372 GCCCATAAGC
107594382 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCCATAGTG
* *
107594427 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T--CG
1 AACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTGCATC-CATAGTG
* ** *
107594474 AACTCGGACTCAACTCAACGAGTTCGCACATTTGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGGGC-GTTGCATCCAT-AGTG
* * *
107594520 AACTTGGACTCAACTTAACGAGTTCGG
1 AACTCGGACTCAACTCAACGAGCTCGG
107594547 ATGCTCAACC
Statistics
Matches: 99, Mismatches: 11, Indels: 19
0.77 0.09 0.15
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
45 27 0.27
46 25 0.25
47 27 0.27
48 1 0.01
49 5 0.05
50 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAGTG
Found at i:107594549 original size:93 final size:92
Alignment explanation
Indices: 107594382--107594550 Score: 257
Period size: 92 Copynumber: 1.8 Consensus size: 92
107594372 GCCCATAAGC
** *
107594382 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAACG
1 AACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAGTGAACTCGGACTCAACTCAACG
107594447 AGCTCGGATGCCTAGTTACATCTCTCG
66 AGCTCGGATGCCTAGTTACATCTCTCG
* * * *
107594474 AACTCGGACTCAACTCAACGAGTTCGCACATTTGCATCCATAAGTGAACTTGGACTCAACTTAAC
1 AACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAAC
*
107594539 GAGTTCGGATGC
65 GAGCTCGGATGC
107594551 TCAACCATCC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
92 36 0.53
93 32 0.47
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTCG
Found at i:107599533 original size:29 final size:29
Alignment explanation
Indices: 107599498--107599571 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
107599488 GTTGTGAGAT
* *
107599498 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
107599527 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
107599556 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
107599572 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:107607328 original size:29 final size:29
Alignment explanation
Indices: 107607293--107607366 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
107607283 GTTGTGAGAT
* *
107607293 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
107607322 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
107607351 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
107607367 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:107612784 original size:46 final size:45
Alignment explanation
Indices: 107612635--107612808 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
107612625 TGTAACCCGC
* * * * *
107612635 CCATAAGTGAACTCGGACTCAACTCAACTAGCTCGGGCGTTCGCAT
1 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
107612681 CCATAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTTACAT
1 CCATAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
107612729 CTC-T--CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
107612772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
107612809 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 5 0.05
45 25 0.23
46 56 0.52
47 6 0.06
48 6 0.06
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:107612827 original size:46 final size:46
Alignment explanation
Indices: 107612640--107612827 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
107612630 CCCGCCCATA
* * ** * *
107612640 AGTGAACTCGGACTCAACTCAACTAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
107612685 AGTGAACTCGGACTCAACTCAACGAG-TCGGATGC-CTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CT
* * * *
107612733 --CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
107612777 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
107612823 AGTGA
1 AGTGA
107612828 CATGTCACTT
Statistics
Matches: 113, Mismatches: 12, Indels: 35
0.71 0.08 0.22
Matches are distributed among these distances:
43 1 0.01
44 13 0.12
45 26 0.23
46 56 0.50
47 7 0.06
48 5 0.04
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:107618787 original size:40 final size:40
Alignment explanation
Indices: 107618732--107618909 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
107618722 TGGGTGATAA
* * * *
107618732 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAATGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
107618772 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
107618812 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
107618852 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
107618892 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
107618910 TACTTGGCTT
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.13
40 110 0.87
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:107624808 original size:13 final size:13
Alignment explanation
Indices: 107624790--107624815 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
107624780 ATATTATAAT
107624790 TATTTTATGTTAA
1 TATTTTATGTTAA
107624803 TATTTTATGTTAA
1 TATTTTATGTTAA
107624816 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:107626467 original size:64 final size:64
Alignment explanation
Indices: 107626386--107626569 Score: 205
Period size: 67 Copynumber: 2.8 Consensus size: 64
107626376 AGACATTATG
* * *
107626386 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
107626450 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
107626515 AA
63 AA
* *
107626517 ACTG--GCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
107626570 CGAACTATAT
Statistics
Matches: 101, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 21 0.21
67 32 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:107626503 original size:67 final size:64
Alignment explanation
Indices: 107626362--107626515 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 64
107626352 CATCATGTGT
* * * *
107626362 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATG
107626427 TAG
62 TAG
* * *
107626430 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACTA--TG-AGGACACCATGT
107626495 AG
63 AG
107626497 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
107626516 AACTGGCTAG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 25 0.33
65 3 0.04
66 4 0.05
67 30 0.40
68 13 0.17
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACTATGAGGACACCATGTAG
Found at i:107630813 original size:55 final size:55
Alignment explanation
Indices: 107630694--107630833 Score: 140
Period size: 55 Copynumber: 2.5 Consensus size: 55
107630684 ATCTGAGAGG
* *
107630694 TTCGACCATGGGTTCTA-GACACGGGCGTGGCGAATGCCCGTGCTATTTTCTCAGG
1 TTCGACCAT-GGTTCTACGACACGGGCGTGGCGAATGCCCGTGCTATTTTCGCAGA
* * * * * * *
107630749 TTCAACCATGGTTCTACGACACGGGCGTGTCGCATGCTCGTGTTGTTTTGGCAGA
1 TTCGACCATGGTTCTACGACACGGGCGTGGCGAATGCCCGTGCTATTTTCGCAGA
* * *
107630804 TTCGCCCATGGTCCTAACG-CACGGCCGTGG
1 TTCGACCATGGTTCT-ACGACACGGGCGTGG
107630834 TGACTTATCG
Statistics
Matches: 69, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
54 7 0.10
55 59 0.86
56 3 0.04
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (55 bp):
TTCGACCATGGTTCTACGACACGGGCGTGGCGAATGCCCGTGCTATTTTCGCAGA
Found at i:107635794 original size:47 final size:47
Alignment explanation
Indices: 107635726--107635989 Score: 183
Period size: 47 Copynumber: 5.6 Consensus size: 47
107635716 TTATTTGTGT
107635726 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTTGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCA-TTGCCACATTATGAGA
* * *
107635772 GCCAGTGTAAGACCATGTCTGGGACATGGCA-T-CCGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGCCACATT---ATGAGA
* ** * *
107635820 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTGC--GA-GATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT-TGCCACATTATGA-GA
* * * * * *
107635864 GTTAGTGTAAGACCGTGTTTGGGACATGGCATCGGCACAGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT-TGC-CACAT-TATGAGA
* *
107635914 GCTAGTGTAAGACCATGTCTGGGACATGGCA-T-CGAC-TTGATGGATTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGCCACATT-AT-GA-GA
*
107635961 GCCAGTGTAAGACCATGTCTGGGACATGG
1 GCTAGTGTAAGACCATGTCTGGGACATGG
107635990 TTTCGGCATT
Statistics
Matches: 173, Mismatches: 26, Indels: 37
0.73 0.11 0.16
Matches are distributed among these distances:
43 2 0.01
44 14 0.08
45 20 0.12
46 26 0.15
47 58 0.34
48 19 0.11
49 3 0.02
50 29 0.17
51 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATTGCCACATTATGAGA
Found at i:107651814 original size:28 final size:28
Alignment explanation
Indices: 107651776--107651882 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
107651766 GAATCATTCG
* *
107651776 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
107651804 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
107651832 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
107651860 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
107651883 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:107656871 original size:28 final size:28
Alignment explanation
Indices: 107656837--107656932 Score: 113
Period size: 28 Copynumber: 3.5 Consensus size: 28
107656827 AACCGATCTT
107656837 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTTGGTTACGGAACTC
* **** * *
107656865 GCACACACAGTGCCTCAAAACCGATCTC
1 GCACACACAGTGCTTGGTTACGGAACTC
*
107656893 G-ACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTTGGTTACGGAACTC
107656920 GCACACACAGTGC
1 GCACACACAGTGC
107656933 CTCAACAACC
Statistics
Matches: 52, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
27 19 0.37
28 33 0.63
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTTGGTTACGGAACTC
Found at i:107656911 original size:55 final size:56
Alignment explanation
Indices: 107656807--107656950 Score: 218
Period size: 55 Copynumber: 2.5 Consensus size: 56
107656797 GATCTCATTT
* * *
107656807 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCG-ACACACAGTGCTCGGTTACGGAACTCG
107656866 CACACACAGTGCCTCAA-AACCGATCTCGACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGACACACAGTGCTCGGTTACGGAACTCG
*
107656921 CACACACAGTGCCTCAACAACCAATCTCGA
1 CACACACAGTGCCTCAACAACCGATCTCGA
107656951 TTACGGAACT
Statistics
Matches: 80, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
55 43 0.54
56 21 0.26
57 9 0.11
59 7 0.09
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.17
Consensus pattern (56 bp):
CACACACAGTGCCTCAACAACCGATCTCGACACACAGTGCTCGGTTACGGAACTCG
Found at i:107660483 original size:30 final size:28
Alignment explanation
Indices: 107660447--107660572 Score: 112
Period size: 28 Copynumber: 4.5 Consensus size: 28
107660437 GACAAGATTG
* *
107660447 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
107660477 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * * *
107660505 GCACTAAGTGTGCGAGCTGAA-AAT-TA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * * *
107660531 GCACTAAGTGTGCGAGCTGAAATATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
107660559 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
107660573 GATTCACTAT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.27
27 4 0.05
28 40 0.47
30 18 0.21
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:107660539 original size:26 final size:27
Alignment explanation
Indices: 107660476--107660572 Score: 142
Period size: 28 Copynumber: 3.6 Consensus size: 27
107660466 AAAATTGTAC
* **
107660476 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTGAAAATAT
107660504 AGCACTAAGTGTGCGAGCTGAAAAT-T
1 AGCACTAAGTGTGCGAGCTGAAAATAT
107660530 AGCACTAAGTGTGCGAGCTGAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAA-ATAT
107660558 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107660573 GATTCACTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
26 24 0.38
27 7 0.11
28 33 0.52
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGAAAATAT
Found at i:107664432 original size:29 final size:28
Alignment explanation
Indices: 107664398--107664500 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
107664388 TACTCAATCA
*
107664398 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
107664427 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
107664456 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
107664485 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
107664501 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:107672434 original size:29 final size:28
Alignment explanation
Indices: 107672400--107672502 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
107672390 TACTCAATCA
*
107672400 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
107672429 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
107672458 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
107672487 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
107672503 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:107677033 original size:40 final size:40
Alignment explanation
Indices: 107676974--107677142 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
107676964 CGGGACTTTA
* * *
107676974 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
107677014 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
107677054 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
107677094 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
107677134 CCCGGATAT
1 CCCGGATAT
107677143 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:107680249 original size:13 final size:13
Alignment explanation
Indices: 107680231--107680255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107680221 AAGTAATCGC
107680231 ACACGGGCATGTT
1 ACACGGGCATGTT
107680244 ACACGGGCATGT
1 ACACGGGCATGT
107680256 CCCTGTCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
ACACGGGCATGTT
Found at i:107683036 original size:40 final size:39
Alignment explanation
Indices: 107682871--107683054 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
107682861 AAATTGAATG
* * *
107682871 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
107682911 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
107682951 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
107682991 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
107683030 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
107683055 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:107683079 original size:80 final size:81
Alignment explanation
Indices: 107682911--107683099 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
107682901 GCTGGAAATT
* * * *
107682911 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
107682976 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
107682992 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
107683055 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
107683071 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
107683100 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:107707570 original size:28 final size:28
Alignment explanation
Indices: 107707519--107707627 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
107707509 CTGCCAGAAC
* * * *
107707519 AGATA-TTGTGACAGAGTCACCAGATAC
1 AGATATTTGTGGCAGAGCCACCAGAAAT
* * *
107707546 AGATAATCGTGGCAGGGCCACCAGAAAT
1 AGATATTTGTGGCAGAGCCACCAGAAAT
**
107707574 AGATATTTGTGATAGAGCCACCAGAAAT
1 AGATATTTGTGGCAGAGCCACCAGAAAT
107707602 AGATATTTGTGGCAGAGCCACCAGAA
1 AGATATTTGTGGCAGAGCCACCAGAA
107707628 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 5 0.07
28 63 0.93
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (28 bp):
AGATATTTGTGGCAGAGCCACCAGAAAT
Done.