Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 352 of 770
Found at i:108023931 original size:40 final size:40
Alignment explanation
Indices: 108023804--108023933 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
108023794 ATGCTGGAAA
* * *
108023804 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
108023844 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
108023884 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
108023924 TTATATCCGG
1 TTATATCCGG
108023934 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:108031226 original size:39 final size:39
Alignment explanation
Indices: 108031169--108031312 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
108031159 GAATGTTCGA
108031169 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
108031208 GTGATATCCGGGCGAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
108031247 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
108031286 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
108031313 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:108031259 original size:78 final size:79
Alignment explanation
Indices: 108031170--108031352 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
108031160 AATGTTCGAG
108031170 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCGAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCGAAGTCCCGAAGGC
108031234 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
**
108031248 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCGAAGTCCCGAAGGC
** *
108031313 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
108031327 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
108031353 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCGAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:108034575 original size:40 final size:40
Alignment explanation
Indices: 108034511--108034701 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
108034501 GCTACTCGTT
* * * ***
108034511 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
108034551 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
108034591 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
108034630 CCATTGCCTTCGGG-CTTAGCCTGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
108034669 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
108034702 TTCGCAAATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:108034628 original size:39 final size:39
Alignment explanation
Indices: 108034547--108034711 Score: 251
Period size: 39 Copynumber: 4.2 Consensus size: 39
108034537 TATGGTAACC
* *
108034547 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
108034587 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
108034626 CGCACCATTGCCTTCGGGCTTAGCCTGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
108034665 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
108034704 CGCA-AATT
1 CGCACAATT
108034712 CATACACATC
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 4 0.04
39 93 0.82
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:108035047 original size:26 final size:25
Alignment explanation
Indices: 108035018--108035073 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 25
108035008 AATCCAAGGT
108035018 ACTTAGCCCTTATAAGGCCGCACAC
1 ACTTAGCCCTTATAAGGCCGCACAC
108035043 AACTTAGCCCTTATAAGGCCGCACAC
1 -ACTTAGCCCTTATAAGGCCGCACAC
108035069 ACTTA
1 ACTTA
108035074 CATCCACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.21
Consensus pattern (25 bp):
ACTTAGCCCTTATAAGGCCGCACAC
Found at i:108042550 original size:38 final size:38
Alignment explanation
Indices: 108042471--108042633 Score: 229
Period size: 39 Copynumber: 4.2 Consensus size: 38
108042461 TATGGTAACC
* * *
108042471 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTT-AGCCGGATATCACAACT
* *
108042510 CGCACAATTGCCTTCGGGCTTAGCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCGGATATCACAACT
*
108042548 CGCACCATTGCCTTCGGGCTTAGCCTGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCC-GGATATCACAACT
*
108042587 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAG-CCGGATATCACAACT
108042626 CGCA-AATT
1 CGCACAATT
108042634 CATACACATC
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 42 0.38
39 68 0.61
40 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCGGATATCACAACT
Found at i:108049022 original size:39 final size:39
Alignment explanation
Indices: 108048968--108049111 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
108048958 GAATGTTCGA
* *
108048968 GTGATATCCAGGCTAAGCCCGAAGGCAATAGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
108049007 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
108049046 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
108049085 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
108049112 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:108057818 original size:80 final size:80
Alignment explanation
Indices: 108057734--108057882 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
108057724 TATGGTAACC
* * * *
108057734 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
108057798 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
108057814 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
108057879 CCGG
66 CCGG
108057883 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:108057824 original size:40 final size:38
Alignment explanation
Indices: 108057775--108057882 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
108057765 ATCACGATTT
*
108057775 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
108057815 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
108057855 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
108057883 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:108065916 original size:40 final size:38
Alignment explanation
Indices: 108065867--108065973 Score: 135
Period size: 39 Copynumber: 2.7 Consensus size: 38
108065857 ATCACGATTT
*
108065867 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
108065907 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
*
108065946 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
108065974 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
38 3 0.05
39 29 0.48
40 29 0.48
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:108065973 original size:39 final size:39
Alignment explanation
Indices: 108065867--108066016 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
108065857 ATCACGATTT
*
108065867 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
108065907 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTA
* * * ** *
108065946 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
108065986 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
108066017 TCATTCAATT
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
38 3 0.03
39 30 0.33
40 58 0.64
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:108074577 original size:31 final size:31
Alignment explanation
Indices: 108074539--108074602 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
108074529 CCTTTTCATA
108074539 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
108074570 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
108074601 TT
1 TT
108074603 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:108074845 original size:24 final size:24
Alignment explanation
Indices: 108074794--108074960 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
108074784 GCTTTATCAT
* *
108074794 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
108074819 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
108074843 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
108074866 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108074890 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108074914 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108074938 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108074961 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:108074894 original size:71 final size:71
Alignment explanation
Indices: 108074793--108074960 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
108074783 TGCTTTATCA
*
108074793 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
108074857 AGCCCTTT
64 AGCCCTTT
* * **
108074865 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
108074930 CCCTTT
66 CCCTTT
108074936 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
108074961 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:108075036 original size:20 final size:20
Alignment explanation
Indices: 108075011--108075070 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
108075001 TATGATTACC
108075011 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
108075031 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
108075051 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
108075071 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:108075145 original size:25 final size:25
Alignment explanation
Indices: 108075113--108075160 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
108075103 ATACATAAAC
* * *
108075113 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
108075138 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
108075161 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:108076358 original size:26 final size:26
Alignment explanation
Indices: 108076317--108076381 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
108076307 GGGCATATTC
108076317 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACC-TACAGGGGCT-TTACG
*
108076344 GTCACTTTACCTACAGGGGCTTTACG
1 GTCATTTTACCTACAGGGGCTTTACG
*
108076370 GTCTTTTTACCT
1 GTCATTTTACCT
108076382 TTTAGGGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGCTTTACG
Found at i:108076464 original size:27 final size:27
Alignment explanation
Indices: 108076442--108076635 Score: 140
Period size: 27 Copynumber: 7.1 Consensus size: 27
108076432 ACAAACCAAA
* *
108076442 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAATCAAG
*
108076469 GGTACTTCTA-TAATTTT-TAAAAGTCAAG
1 GGTATTTC-AGTAATTTTGT-AAA-TCAAG
* * *
108076497 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCAGTAATTTTGTAAATCAAG
** ** **
108076524 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*
108076551 GGTATTTCGGTAATTTTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** *
108076578 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** * * *
108076605 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
108076632 GGTA
1 GGTA
108076636 AAATGGTAAT
Statistics
Matches: 135, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 113 0.84
28 20 0.15
29 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAATCAAG
Found at i:108076591 original size:54 final size:54
Alignment explanation
Indices: 108076495--108076888 Score: 242
Period size: 54 Copynumber: 7.4 Consensus size: 54
108076485 TTAAAAGTCA
* * **** *
108076495 AGGGTATTTCTGTAACTTTGTAAATC-AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTGTAAATCGA-GGGTAAAACGGTAATTTTACAAATCG
* * * ** *
108076549 AGGGTATTTCGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
*** * * * * * **
108076603 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
*** * * * * **
108076657 AGGGTAAAACGGTAATTCTGTAAGTCGAGGGT-AAACGATAATTATGTAAATC-
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
*** * * * *
108076709 AGGGTAAAACGGTAATTATGTAAAT-TAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
** * * * *
108076762 AGGGTAAAAT-AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTTTACAAATCG
*** ** *
108076816 AGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAGTCG
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
**
108076870 AGGGTATTTCAATAATTTT
1 AGGGTATTTCGGTAATTTT
108076889 ACAGGTCGAG
Statistics
Matches: 281, Mismatches: 51, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
51 5 0.02
52 40 0.14
53 37 0.13
54 197 0.70
55 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCG
Found at i:108076608 original size:81 final size:81
Alignment explanation
Indices: 108076531--108076888 Score: 283
Period size: 81 Copynumber: 4.5 Consensus size: 81
108076521 AGGGGTATTT
* * *
108076531 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTG
1 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
108076596 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
** * * * ** *
108076612 CAGTAATTCTATAAATCGAGGGTAAAAT-GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCT
1 TGGTAATTTTACAAATTGAGGGT-ATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT
* * *
108076676 GTAAGTCGAGGGT-AAA
65 ATAAATCAAGGGTAAAA
* * * ** * *** * *
108076692 CGATAATTATGTAAA-TCAGGGTAAAACGGTAATTATGTAAAT-TAGGGTAAAACGGTAATTCTA
1 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
*
108076755 TAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * ** * *** * * *
108076771 TAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTA
1 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
* *
108076836 CAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * **
108076852 CGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTT
1 TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTT
108076889 ACAGGTCGAG
Statistics
Matches: 225, Mismatches: 47, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
78 33 0.15
79 33 0.15
80 38 0.17
81 119 0.53
82 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
TGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTA
TAAATCAAGGGTAAAA
Found at i:108076636 original size:27 final size:27
Alignment explanation
Indices: 108076558--108076875 Score: 396
Period size: 27 Copynumber: 11.9 Consensus size: 27
108076548 GAGGGTATTT
* *
108076558 CGGTAATTTTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
108076585 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
108076612 CAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
108076639 TGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
108076666 CGGTAATTCTGTAAGTCGAGGGT-AAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
108076692 CGATAATTATGTAAATC-AGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
108076718 CGGTAATTATGTAAAT-TAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
108076744 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
**
108076771 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CGGTAATTCTGTAAATC-GAGGGTAAAA
*
108076798 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* **
108076825 CGGTAATTTTACAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
108076852 CGGTAATT-T-TACAAGTCGAGGGTA
1 CGGTAATTCTGTA-AA-TCGAGGGTA
108076876 TTTCAATAAT
Statistics
Matches: 259, Mismatches: 25, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
25 6 0.02
26 62 0.24
27 190 0.73
28 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:108077031 original size:26 final size:27
Alignment explanation
Indices: 108076827--108077046 Score: 143
Period size: 27 Copynumber: 8.3 Consensus size: 27
108076817 GGGTAAAACG
* *****
108076827 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTACAAAGCGAGGGTATTTTA
*
108076854 GTAATTTTAC-AAGTCGAGGGTATTTCA
1 GTAATTTTACAAAG-CGAGGGTATTTTA
* * *
108076881 ATAATTTTAC-AGGTCGAGGGTATTTCA
1 GTAATTTTACAAAG-CGAGGGTATTTTA
* ** *
108076908 GTAATTTCACAAA-TTAGGGGTATTTTG
1 GTAATTTTACAAAGCGA-GGGTATTTTA
*
108076935 GTAATTTTACAAA-CTAGGGGTATTTT-
1 GTAATTTTACAAAGCGA-GGGTATTTTA
* *
108076961 GATAATTTTACAAA-CTAGGGTA-TTTG
1 G-TAATTTTACAAAGCGAGGGTATTTTA
* * *
108076987 GTAA-TTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAAGCGAGGGTATTTTA
*
108077013 GTAATTTTACAAAGC-AGGGTATTTTG
1 GTAATTTTACAAAGCGAGGGTATTTTA
108077039 GTAATTTT
1 GTAATTTT
108077047 GTAAACCAAA
Statistics
Matches: 163, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
24 7 0.04
25 13 0.08
26 35 0.21
27 107 0.66
28 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAAGCGAGGGTATTTTA
Found at i:108077039 original size:52 final size:52
Alignment explanation
Indices: 108076897--108077064 Score: 191
Period size: 51 Copynumber: 3.2 Consensus size: 52
108076887 TTACAGGTCG
* * * * *
108076897 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAA-CA-GGGTATTTTGGTAATTTTATAAACCA
*
108076951 GGGGTATTTT-GATAATTTTACAAACTAGGGTA-TTTGGTAA-TTTATAAACCA
1 AGGGTATTTTAG-TAATTTTACAAAC-AGGGTATTTTGGTAATTTTATAAACCA
*
108077002 AGGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAA-CAGGGTATTTTGGTAATTTTATAAACCA
*
108077055 A-AGTATTTTA
1 AGGGTATTTTA
108077065 AACATGGATA
Statistics
Matches: 99, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
51 36 0.36
52 26 0.26
53 17 0.17
54 20 0.20
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (52 bp):
AGGGTATTTTAGTAATTTTACAAACAGGGTATTTTGGTAATTTTATAAACCA
Found at i:108077060 original size:26 final size:26
Alignment explanation
Indices: 108076926--108077063 Score: 127
Period size: 26 Copynumber: 5.3 Consensus size: 26
108076916 ACAAATTAGG
* * *
108076926 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
108076953 GGTATTTTGATAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTATAAACCAA
108076979 GGTA-TTTGGTAA-TTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
108077003 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
108077030 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
108077056 AGTATTTT
1 GGTATTTT
108077064 AAACATGGAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
24 9 0.10
25 11 0.12
26 40 0.43
27 33 0.35
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:108079885 original size:31 final size:31
Alignment explanation
Indices: 108079847--108079910 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
108079837 CCTTTTCATA
108079847 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
108079878 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
108079909 TT
1 TT
108079911 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:108080153 original size:24 final size:24
Alignment explanation
Indices: 108080102--108080268 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
108080092 GCTTTATCAT
* *
108080102 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
108080127 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
108080151 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
108080174 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108080198 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108080222 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108080246 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108080269 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:108080202 original size:71 final size:71
Alignment explanation
Indices: 108080101--108080268 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
108080091 TGCTTTATCA
*
108080101 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
108080165 AGCCCTTT
64 AGCCCTTT
* * **
108080173 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
108080238 CCCTTT
66 CCCTTT
108080244 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
108080269 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:108080344 original size:20 final size:20
Alignment explanation
Indices: 108080319--108080378 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
108080309 TATGATTACC
108080319 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
108080339 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
108080359 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
108080379 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:108080453 original size:25 final size:25
Alignment explanation
Indices: 108080421--108080468 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
108080411 ATACATAAAC
* * *
108080421 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
108080446 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
108080469 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:108081666 original size:26 final size:26
Alignment explanation
Indices: 108081625--108081689 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
108081615 GGGCATATTC
108081625 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACC-TACAGGGGCT-TTACG
*
108081652 GTCACTTTACCTACAGGGGCTTTACG
1 GTCATTTTACCTACAGGGGCTTTACG
*
108081678 GTCTTTTTACCT
1 GTCATTTTACCT
108081690 TTTAGGGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 23 0.68
27 11 0.32
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGCTTTACG
Found at i:108081772 original size:27 final size:26
Alignment explanation
Indices: 108081742--108081797 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
108081732 GTAAATCAAC
*
108081742 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
108081769 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
108081795 AAA
1 AAA
108081798 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:108081838 original size:27 final size:27
Alignment explanation
Indices: 108081750--108081888 Score: 95
Period size: 27 Copynumber: 5.0 Consensus size: 27
108081740 ACAAACCAAA
* * **
108081750 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCTGTAATTTTGTAAATCAGG
* * *
108081777 GGTACTTCTATAATTTT-TAAAAAGTCAAG
1 GGTATTTCTGTAATTTTGT--AAA-TCAGG
*
108081806 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAATTTTGTAAATCAGG
** *
108081833 GGTATTT-TGGTAATTTTACAAAT-TGAG
1 GGTATTTCT-GTAATTTTGTAAATCAG-G
*
108081860 GGTATTTCGGTAATTTTGTAAATCGAGG
1 GGTATTTCTGTAATTTTGTAAATC-AGG
108081888 G
1 G
108081889 TAAAACAGTA
Statistics
Matches: 86, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
26 3 0.03
27 56 0.65
28 8 0.09
29 18 0.21
30 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTGTAAATCAGG
Found at i:108081889 original size:27 final size:27
Alignment explanation
Indices: 108081804--108082365 Score: 181
Period size: 27 Copynumber: 20.9 Consensus size: 27
108081794 TAAAAAGTCA
* * * *
108081804 AGGGTATTTCTGTAACTTTGTAAATC-
1 AGGGTAATTCGGTAATTTTATAAATCG
* * * *
108081830 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTAATTCGGTAATTTTATAAATCG
* *
108081858 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTAATTCGGTAATTTTATAAATCG
** * * * *
108081885 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAATTCGGTAATTTTATAAATCG
** * *
108081912 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAATTCGGTAATTTTATAAATCG
** * * *
108081939 AGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTAATTCGGTAATTTTATAAATCG
** * * *
108081966 AGGGTAAAACGGTAATTCTGTAAGTCG
1 AGGGTAATTCGGTAATTTTATAAATCG
** * * *
108081993 AGGGTAAAACGATAATTATGTAAATC-
1 AGGGTAATTCGGTAATTTTATAAATCG
** * * *
108082019 AGGGGTAAAACGGTAATTATGTAAAT-T
1 A-GGGTAATTCGGTAATTTTATAAATCG
** *
108082046 AGGGGTAAAACGGTAATTCTATAAATCG
1 A-GGGTAATTCGGTAATTTTATAAATCG
* * * *
108082074 AGGGTAAAAT-AGTAATTCTGTAAA-CTG
1 AGGGT-AATTCGGTAATTTTATAAATC-G
** *
108082101 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAATTCGGTAATTTTATAAATCG
** *
108082128 AGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAATTCGGTAATTTTATAAATCG
** * *
108082155 AGGGTAAAACGGTAATTTTACAAGTCG
1 AGGGTAATTCGGTAATTTTATAAATCG
* ** * **
108082182 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTAATTCGGTAATTTTATAAATCG
* * * * *
108082209 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTAATTCGGTAATTTTATAAATCG
* * * *
108082235 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTAATTCGGTAATTTTATAAATCG
* * * * *
108082262 AGGGGTATTTTGATAATTTTACAAA-CT
1 A-GGGTAATTCGGTAATTTTATAAATCG
* * *
108082289 AGGGGTATTTTGGTAATTTTATAAA-CC
1 A-GGGTAATTCGGTAATTTTATAAATCG
* * ** * *
108082316 AAGGTATTTTAGTAATTTTACAAAGC-
1 AGGGTAATTCGGTAATTTTATAAATCG
* * *
108082342 AGGGTATTTTGGTAATTTTGTAAA
1 AGGGTAATTCGGTAATTTTATAAA
108082366 CCAAAGTATT
Statistics
Matches: 460, Mismatches: 64, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
26 47 0.10
27 407 0.88
28 6 0.01
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (27 bp):
AGGGTAATTCGGTAATTTTATAAATCG
Found at i:108081900 original size:54 final size:54
Alignment explanation
Indices: 108081867--108082187 Score: 387
Period size: 54 Copynumber: 5.9 Consensus size: 54
108081857 GAGGGTATTT
* * *
108081867 CGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * * *
108081921 CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * * *
108081975 CGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA-GGGTAAAA
* *
108082029 CGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
** *
108082083 TAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
** * * *
108082137 CGGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAGTCGAGGGTA
1 CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
108082188 TTTCAATAAT
Statistics
Matches: 231, Mismatches: 30, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
53 2 0.01
54 226 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (54 bp):
CGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
Found at i:108081927 original size:81 final size:81
Alignment explanation
Indices: 108081842--108082171 Score: 387
Period size: 81 Copynumber: 4.1 Consensus size: 81
108081832 GGGTATTTTG
* * *** * * *
108081842 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
108081907 AATCAAGGGTAAAACA
66 AATCGAGGGTAAAACA
* * *
108081923 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
108081988 AGTCGAGGGTAAAAC-
66 AATCGAGGGTAAAACA
* * * * *
108082003 GATAATTATGTAAA-TCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCT
1 G-TAATTCTATAAATTGA-GGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCT
*
108082066 ATAAATCGAGGGTAAAATA
63 ATAAATCGAGGGTAAAACA
* * * * *
108082085 GTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
108082150 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACA
108082166 GTAATT
1 GTAATT
108082172 TTACAAGTCG
Statistics
Matches: 214, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
80 3 0.01
81 207 0.97
82 4 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAACA
Found at i:108082374 original size:26 final size:26
Alignment explanation
Indices: 108082238--108082377 Score: 145
Period size: 26 Copynumber: 5.3 Consensus size: 26
108082228 ACAAATTAGG
* * *
108082238 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
108082265 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
108082292 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
108082318 GGTATTTTAGTAATTTTACAAAGCAG
1 GGTATTTTGGTAATTTTATAAACCAA
*
108082344 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
108082370 AGTATTTT
1 GGTATTTT
108082378 AAACATGGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 50 0.51
27 48 0.49
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:108087074 original size:47 final size:47
Alignment explanation
Indices: 108087011--108087162 Score: 286
Period size: 47 Copynumber: 3.2 Consensus size: 47
108087001 CCCTTCGGGA
* *
108087011 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
108087058 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
108087105 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
108087152 CTTATCACATA
1 CTTATCACATA
108087163 ATTAATACTA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 103 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:108094111 original size:40 final size:39
Alignment explanation
Indices: 108093943--108094113 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
108093933 AGAAATTGAA
* *
108093943 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
108093983 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
108094023 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
108094063 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
108094103 TGATATCCGGG
1 TGATATCCGGG
108094114 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:108102008 original size:39 final size:40
Alignment explanation
Indices: 108101950--108102050 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
108101940 AAATTGAATG
* *
108101950 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
108101989 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
108102029 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
108102051 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:108102043 original size:40 final size:40
Alignment explanation
Indices: 108101950--108102100 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
108101940 AAATTGAATG
* * * * *
108101950 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108101989 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108102029 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
108102069 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
108102101 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:108102115 original size:40 final size:38
Alignment explanation
Indices: 108101946--108102117 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
108101936 TGAGAAATTG
* *
108101946 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
108101985 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
108102022 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
108102062 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
108102102 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
108102118 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:108105323 original size:29 final size:28
Alignment explanation
Indices: 108105221--108105324 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
108105211 GTGACAAGAT
*
108105221 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
108105250 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
108105279 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
108105308 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
108105325 AATCGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:108113313 original size:29 final size:28
Alignment explanation
Indices: 108113211--108113314 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
108113201 GTGACAAGAT
*
108113211 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
108113240 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
108113269 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
108113298 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
108113315 AATCGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:108117313 original size:29 final size:28
Alignment explanation
Indices: 108117211--108117314 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
108117201 GTGACAAGAT
*
108117211 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
108117240 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
108117269 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
108117298 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
108117315 AATCGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:108123573 original size:27 final size:28
Alignment explanation
Indices: 108123532--108123637 Score: 139
Period size: 27 Copynumber: 3.9 Consensus size: 28
108123522 CTGCCAAAAT
* *
108123532 AGATA-TTGTGACAGAGTCACCAGATAC
1 AGATATTTGTGGCAGAGCCACCAGATAC
*
108123559 AGATA-TTGTGGCAGAGCCACCATA-ACC
1 AGATATTTGTGGCAGAGCCACCAGATA-C
*
108123586 AGATATTTGTGGCAGAGCCACTAGAT-C
1 AGATATTTGTGGCAGAGCCACCAGATAC
108123613 AGATATTTGTGGCAGAGCCACCAGA
1 AGATATTTGTGGCAGAGCCACCAGA
108123638 ACGCTTCCTC
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.01
27 52 0.74
28 17 0.24
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (28 bp):
AGATATTTGTGGCAGAGCCACCAGATAC
Found at i:108123623 original size:55 final size:54
Alignment explanation
Indices: 108123532--108123635 Score: 156
Period size: 55 Copynumber: 1.9 Consensus size: 54
108123522 CTGCCAAAAT
*
108123532 AGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCACCATAACC
1 AGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCATAACC
* *
108123586 AGATATTTGTGGCAGAGCCACTAGAT-CAGATATTTGTGGCAGAGCCACCA
1 AGATA-TTGTGACAGAGCCACCAGATACAGATA-TTGTGGCAGAGCCACCA
108123636 GAACGCTTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
54 11 0.24
55 34 0.76
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (54 bp):
AGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCATAACC
Found at i:108127562 original size:28 final size:28
Alignment explanation
Indices: 108127489--108127622 Score: 157
Period size: 27 Copynumber: 4.9 Consensus size: 28
108127479 GGCTGCCAGG
* * * * *
108127489 ACAGATA-TTGTGACAGAGTCATCAGAT
1 ACAGATATTTGTGGCAGAGCCACCATAA
108127516 ACAGATA-TTGTGGCAGAGCCACCATAA
1 ACAGATATTTGTGGCAGAGCCACCATAA
*
108127543 ACAGATATTTTTGGCAGAGCCACCATAA
1 ACAGATATTTGTGGCAGAGCCACCATAA
*
108127571 ACAGATATTTGTGGCAGAGCCACCA-GA
1 ACAGATATTTGTGGCAGAGCCACCATAA
* * *
108127598 TCAAATATTTGTGGTAGAGCCACCA
1 ACAGATATTTGTGGCAGAGCCACCA
108127623 GAACGCTTCC
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 52 0.55
28 43 0.45
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCATAA
Found at i:108127575 original size:55 final size:55
Alignment explanation
Indices: 108127516--108127622 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
108127506 GTCATCAGAT
* *
108127516 ACAGATA-TTGTGGCAGAGCCACCATAAACAGATATTTTTGGCAGAGCCACCATAA
1 ACAGATATTTGTGGCAGAGCCACCA-AAACAAATATTTGTGGCAGAGCCACCATAA
* * *
108127571 ACAGATATTTGTGGCAGAGCCACCAGATCAAATATTTGTGGTAGAGCCACCA
1 ACAGATATTTGTGGCAGAGCCACCAAAACAAATATTTGTGGCAGAGCCACCA
108127623 GAACGCTTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 29 0.63
56 17 0.37
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.22
Consensus pattern (55 bp):
ACAGATATTTGTGGCAGAGCCACCAAAACAAATATTTGTGGCAGAGCCACCATAA
Found at i:108127756 original size:27 final size:26
Alignment explanation
Indices: 108127726--108127791 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
108127716 GTCAAAATTA
*
108127726 ACCTTAGGGGTATAATGGTAATTTTGC
1 ACCTTAGGGGTATAATGGTAATATT-C
108127753 ACC-TAGGGGTATAATGGTAATATTC
1 ACCTTAGGGGTATAATGGTAATATTC
*
108127778 ATACTTAGGGGTAT
1 A-CCTTAGGGGTAT
108127792 TTTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 2 0.06
26 21 0.60
27 12 0.34
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.35
Consensus pattern (26 bp):
ACCTTAGGGGTATAATGGTAATATTC
Found at i:108128726 original size:20 final size:20
Alignment explanation
Indices: 108128701--108128743 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
108128691 CTAAAAGATA
108128701 TGAAGAAAATAGAAGGATTT
1 TGAAGAAAATAGAAGGATTT
108128721 TGAAGAAAATAGAAGGATTT
1 TGAAGAAAATAGAAGGATTT
108128741 TGA
1 TGA
108128744 CTAGAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (20 bp):
TGAAGAAAATAGAAGGATTT
Found at i:108142693 original size:40 final size:40
Alignment explanation
Indices: 108142585--108142794 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
108142575 CGGGATTTAA
* * * * *
108142585 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
108142625 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108142665 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108142705 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108142745 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108142785 CCGGATATAT
1 CCGGATATAT
108142795 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:108150826 original size:40 final size:40
Alignment explanation
Indices: 108150718--108150927 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
108150708 CGGGATTTAA
* * * * *
108150718 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
108150758 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108150798 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108150838 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108150878 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
108150918 CCGGATATAT
1 CCGGATATAT
108150928 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:108156906 original size:21 final size:21
Alignment explanation
Indices: 108156863--108156918 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
108156853 GTGGGGGTCT
* **
108156863 ACATGCCCATGTGAAGGTTAC
1 ACATGCCCGTGTGAAGGGGAC
*
108156884 ACATGCCCGTGTGGAGGGGAC
1 ACATGCCCGTGTGAAGGGGAC
* *
108156905 ACACGCCTGTGTGA
1 ACATGCCCGTGTGA
108156919 CAACCTATGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (21 bp):
ACATGCCCGTGTGAAGGGGAC
Found at i:108160612 original size:15 final size:15
Alignment explanation
Indices: 108160580--108160608 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
108160570 ATTTTCTGTG
108160580 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
108160595 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
108160609 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:108160738 original size:151 final size:153
Alignment explanation
Indices: 108160553--108160858 Score: 598
Period size: 151 Copynumber: 2.0 Consensus size: 153
108160543 TTCGAGTCAA
108160553 AAAAATATTTAAAAATGATTTTCTGTGTTTATTATGTGTGAATTTATTTGTGTGAAATTTTCGTG
1 AAAAATATTTAAAAATGATTTTCTGTGTTTATTATGTGTGAATTTATTTGTGTGAAATTTTCGTG
108160618 ATTTAATTTTTTCGTTTGAGTTCTCGATTTAATAAAA-GGCTTAATCGCGTAAAATGAAAATTTG
66 ATTTAATTTTTTCGTTTGAGTTCTCGATTTAATAAAAGGGCTTAATCGCGTAAAATGAAAATTTG
108160682 ATGGTTAATTTTACAAAAGGCCG
131 ATGGTTAATTTTACAAAAGGCCG
108160705 AAAAATATTTAAAAATGA-TTTCTGTGTTTATTATGTGTGAATTTATTTGTGTGAAATTTTCGTG
1 AAAAATATTTAAAAATGATTTTCTGTGTTTATTATGTGTGAATTTATTTGTGTGAAATTTTCGTG
108160769 ATTTAATTTTTTCGTTTGAGTTCTCGATTTAATAAAAGGGCTTAATCGCGTAAAATGAAAATTTG
66 ATTTAATTTTTTCGTTTGAGTTCTCGATTTAATAAAAGGGCTTAATCGCGTAAAATGAAAATTTG
108160834 ATGGTTAATTTTACAAAAGGCCG
131 ATGGTTAATTTTACAAAAGGCCG
108160857 AA
1 AA
108160859 TTAATGATGT
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
151 83 0.54
152 70 0.46
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (153 bp):
AAAAATATTTAAAAATGATTTTCTGTGTTTATTATGTGTGAATTTATTTGTGTGAAATTTTCGTG
ATTTAATTTTTTCGTTTGAGTTCTCGATTTAATAAAAGGGCTTAATCGCGTAAAATGAAAATTTG
ATGGTTAATTTTACAAAAGGCCG
Found at i:108160763 original size:15 final size:15
Alignment explanation
Indices: 108160731--108160759 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
108160721 GATTTCTGTG
108160731 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
108160746 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
108160760 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:108160886 original size:16 final size:17
Alignment explanation
Indices: 108160862--108160895 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
108160852 GGCCGAATTA
*
108160862 ATGATGTATTTAT-TGC
1 ATGAGGTATTTATGTGC
108160878 ATGAGGTATTTATGTGC
1 ATGAGGTATTTATGTGC
108160895 A
1 A
108160896 AATAGACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.26, C:0.06, G:0.24, T:0.44
Consensus pattern (17 bp):
ATGAGGTATTTATGTGC
Found at i:108163327 original size:28 final size:27
Alignment explanation
Indices: 108163251--108163328 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
108163241 GCAATAAGCC
* *
108163251 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTT-ATAATCAAACT
108163279 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCT-TATAATCAAACT
*
108163307 TGCACACTTAGTGCTGTATAAT
1 CGCACACTTAGTGCT-TATAAT
108163329 TTGAACCCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:108170912 original size:28 final size:27
Alignment explanation
Indices: 108170836--108170913 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
108170826 GCAATAAGCC
* *
108170836 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTT-ATAATCAAACT
108170864 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCT-TATAATCAAACT
*
108170892 TGCACACTTAGTGCTGTATAAT
1 CGCACACTTAGTGCT-TATAAT
108170914 TTGAACCCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:108172367 original size:41 final size:42
Alignment explanation
Indices: 108172266--108172373 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
108172256 ATATGTGTTC
* * * *
108172266 TCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGATATATGAT
1 TCGTGTAAGACC-CTGTCTAGGACATCGGCATCGATATATAAT
* * *
108172308 TATGTGTAAGACCATGTCTAGGACATCGGCATCG-TATTTAAT
1 T-CGTGTAAGACCCTGTCTAGGACATCGGCATCGATATATAAT
108172350 TCGTGTAAGACCCTGTCTAGGACA
1 TCGTGTAAGACCCTGTCTAGGACA
108172374 GTGGCACCAA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 21 0.38
42 8 0.15
43 26 0.47
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCCTGTCTAGGACATCGGCATCGATATATAAT
Found at i:108179162 original size:15 final size:15
Alignment explanation
Indices: 108179130--108179158 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
108179120 ATTTTTTTTG
108179130 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
108179145 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
108179159 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:108180343 original size:43 final size:42
Alignment explanation
Indices: 108180282--108180450 Score: 198
Period size: 43 Copynumber: 4.0 Consensus size: 42
108180272 TAGGGTTTTT
* *
108180282 GATATGTGTTCTCATGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGAT-TCATGTAAGACCACGTCTGGGACATTGGCATC
* * *
108180325 GATATGTGATTACATGTAAGACCATGTTTGGGACATCGGCATC
1 GATATGTGATT-CATGTAAGACCACGTCTGGGACATTGGCATC
* * * *
108180368 G-TATTTAATTCGTGTAAGA-CACTGTCTGGGACAGTGGCATC
1 GATATGTGATTCATGTAAGACCAC-GTCTGGGACATTGGCATC
*
108180409 GATATGTGATTGCATGTAAGACCACGTCTAGGACATTGGCAT
1 GATATGTGATT-CATGTAAGACCACGTCTGGGACATTGGCAT
108180451 TGTACGATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
40 2 0.02
41 24 0.23
42 15 0.14
43 60 0.58
44 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGATTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:108180443 original size:84 final size:84
Alignment explanation
Indices: 108180296--108180450 Score: 233
Period size: 84 Copynumber: 1.8 Consensus size: 84
108180286 TGTGTTCTCA
* * *
108180296 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCATGTTTGGGACAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGACAT
108180361 CGGCATCGTATTTAATTCG
66 CGGCATCGTATTTAATTCG
*
108180380 TGTAAGA-CACTGTCTGGGACAG-TGGCATCGATATGTGATTGCATGTAAGACCACGTCTAGGAC
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGAC
*
108180443 ATTGGCAT
64 ATCGGCAT
108180451 TGTACGATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 3 0.05
84 60 0.94
85 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (84 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGACAT
CGGCATCGTATTTAATTCG
Found at i:108184780 original size:33 final size:33
Alignment explanation
Indices: 108184743--108184815 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
108184733 CTGAAAAATG
108184743 TATGATTATTGATGACTATATATGTTAGTGGAT
1 TATGATTATTGATGACTATATATGTTAGTGGAT
108184776 TATGATTATTGATGACTATATATGTTAGTGGAT
1 TATGATTATTGATGACTATATATGTTAGTGGAT
108184809 TAGTGAT
1 TA-TGAT
108184816 GAAATTACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
33 35 0.90
34 4 0.10
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45
Consensus pattern (33 bp):
TATGATTATTGATGACTATATATGTTAGTGGAT
Found at i:108187252 original size:31 final size:30
Alignment explanation
Indices: 108187216--108187319 Score: 124
Period size: 29 Copynumber: 3.5 Consensus size: 30
108187206 CCTTCGAGCT
**
108187216 TGCACACCCAGTGCCGTATTTTTTTCCAGCA
1 TGCACACTTAGTGCC-TATTTTTTTCCAGCA
* *
108187247 TGCACACTTAGTGCC-ATATATTTCCAGCA
1 TGCACACTTAGTGCCTATTTTTTTCCAGCA
*
108187276 TGCACACTTAGTGCC-ATATATTTT-CAGCA
1 TGCACACTTAGTGCCTAT-TTTTTTCCAGCA
108187305 TGCACACTTAGTGCC
1 TGCACACTTAGTGCC
108187320 AATCTCGTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
29 49 0.75
30 3 0.05
31 13 0.20
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
TGCACACTTAGTGCCTATTTTTTTCCAGCA
Found at i:108187260 original size:60 final size:58
Alignment explanation
Indices: 108187188--108187320 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 58
108187178 ATTTAAGCCC
* * * * * *
108187188 GCACACATAGTGCCATACCCTTCGAGCTTGCACACCCAGTGCCGTATTTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATA-TATTTT-CAGCAT
* * **
108187248 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTTCAGCAT
108187306 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
108187321 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
58 21 0.33
59 5 0.08
60 37 0.59
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTTCAGCAT
Found at i:108187279 original size:29 final size:29
Alignment explanation
Indices: 108187238--108187320 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
108187228 GCCGTATTTT
108187238 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
108187267 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
108187296 TTTTCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
108187321 ATCTCGTCAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:108192174 original size:40 final size:39
Alignment explanation
Indices: 108192047--108192176 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
108192037 ATGCTGGAAA
* *
108192047 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
108192087 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
108192127 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
108192167 TTATATCCGG
1 TTATATCCGG
108192177 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:108200223 original size:40 final size:39
Alignment explanation
Indices: 108200096--108200225 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
108200086 ATGCTGGAAA
* *
108200096 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
108200136 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
108200176 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
108200216 TTATATCCGG
1 TTATATCCGG
108200226 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:108202983 original size:20 final size:19
Alignment explanation
Indices: 108202923--108202988 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
108202913 ATTGAACTTG
108202923 AAAATTGGACCTGAGA-TCA
1 AAAATTGGA-CTGAGACTCA
* *
108202942 AAAGTTGGAACCGAGAAC-CA
1 AAAATTGG-ACTGAG-ACTCA
108202962 AAAATTGAGACTGAGACTC-
1 AAAATTG-GACTGAGACTCA
108202981 AAAATTGG
1 AAAATTGG
108202989 TCTAACTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
18 1 0.03
19 20 0.53
20 16 0.42
21 1 0.03
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (19 bp):
AAAATTGGACTGAGACTCA
Found at i:108204299 original size:15 final size:15
Alignment explanation
Indices: 108204279--108204347 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
108204269 GTATCTTGGG
108204279 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
108204294 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
108204309 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
108204324 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
108204339 TTTCTTTAT
1 TTTCTTTAT
108204348 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:108204348 original size:30 final size:30
Alignment explanation
Indices: 108204270--108204357 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
108204260 CATAGTATCG
* * * *
108204270 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
108204300 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
108204330 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
108204358 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:108206794 original size:46 final size:46
Alignment explanation
Indices: 108206741--108206916 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
108206731 TATTTGGGCA
108206741 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
108206787 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
108206834 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
108206880 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
108206917 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:108206896 original size:93 final size:93
Alignment explanation
Indices: 108206737--108206908 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
108206727 GGGATATTTG
* *
108206737 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
108206802 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
108206830 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
108206895 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
108206909 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:108208787 original size:34 final size:34
Alignment explanation
Indices: 108208747--108208823 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
108208737 GCTTGAAGCA
108208747 TTTCTCTAGTCCTCTCTAACCTAGCCTCGAAA-AC
1 TTTCTCTAGTCCTCTCTAACCTAGCCTC-AAACAC
108208781 TTTCTCTAGTCCTCTCTAACCTAGCCTCAAACAC
1 TTTCTCTAGTCCTCTCTAACCTAGCCTCAAACAC
108208815 TTTCTCTAG
1 TTTCTCTAG
108208824 CATTTCCCTC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 3 0.07
34 39 0.93
ACGTcount: A:0.22, C:0.35, G:0.08, T:0.35
Consensus pattern (34 bp):
TTTCTCTAGTCCTCTCTAACCTAGCCTCAAACAC
Found at i:108218266 original size:21 final size:21
Alignment explanation
Indices: 108218241--108218288 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
108218231 GGGAGGATGT
*
108218241 ACATGGCCGTGTG-GCTAAGGC
1 ACATGGCCATGTGAGCT-AGGC
* *
108218262 ACATGCCCATGTGAGCTAGGG
1 ACATGGCCATGTGAGCTAGGC
108218283 ACATGG
1 ACATGG
108218289 TTCTTTGAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (21 bp):
ACATGGCCATGTGAGCTAGGC
Found at i:108219190 original size:22 final size:22
Alignment explanation
Indices: 108219164--108219222 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
108219154 CTTTTTTTTT
108219164 AAAATAAAAATAAAAATAACT-A
1 AAAAT-AAAATAAAAATAACTAA
*
108219186 AAAATAAAATAAAAAATAATTAA
1 AAAATAAAAT-AAAAATAACTAA
108219209 AAAATGAAAATAAA
1 AAAAT-AAAATAAA
108219223 TATTTAAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 5 0.15
22 14 0.42
23 9 0.27
24 5 0.15
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (22 bp):
AAAATAAAATAAAAATAACTAA
Found at i:108222748 original size:82 final size:82
Alignment explanation
Indices: 108222587--108222767 Score: 199
Period size: 82 Copynumber: 2.2 Consensus size: 82
108222577 AAAAAATTAA
* *
108222587 AAATTC-TCTTAAAAATAAGTACACCAATGAACCTTGACAAACGGTTGTTCAAATTCATTTGAAT
1 AAATTCATTTTAAAAATAAGTACACCAATGAACCTTGACAAACGATTGTTCAAATTCATTTGAAT
108222651 TTAGATAAATATTATTTT
66 TTAGATAAATATTA-TTT
* * * * * *
108222669 AAATT-ATTTTAAAAATAAGTATATCAATGAA-CTTGAAGAAATGATTGTTGAAGTTCATTTGAA
1 AAATTCATTTTAAAAATAAGTACACCAATGAACCTTG-ACAAACGATTGTTCAAATTCATTTGAA
* *
108222732 TTTGGATACCAT-TTATTT
65 TTTAGATA-AATATTATTT
* *
108222750 AGATTCATTCTAAAAATA
1 AAATTCATTTTAAAAATA
108222768 TAAAAGAACA
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
81 11 0.13
82 70 0.84
83 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (82 bp):
AAATTCATTTTAAAAATAAGTACACCAATGAACCTTGACAAACGATTGTTCAAATTCATTTGAAT
TTAGATAAATATTATTT
Found at i:108226696 original size:16 final size:16
Alignment explanation
Indices: 108226670--108226705 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
108226660 AATCACAATG
108226670 ATAACATGCGTAATAAA
1 ATAACATGCGTAA-AAA
108226687 ATAA-ATGCGTAAAAA
1 ATAACATGCGTAAAAA
108226702 ATAA
1 ATAA
108226706 TAAAAGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 8 0.42
17 4 0.21
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.22
Consensus pattern (16 bp):
ATAACATGCGTAAAAA
Found at i:108227048 original size:12 final size:12
Alignment explanation
Indices: 108227025--108227065 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
108227015 AAAGAAATAA
108227025 AATAATTAGTAAT
1 AATAA-TAGTAAT
108227038 AATAATAGTAAT
1 AATAATAGTAAT
* *
108227050 GATAATAATAAT
1 AATAATAGTAAT
108227062 AATA
1 AATA
108227066 CAAATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 20 0.80
13 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (12 bp):
AATAATAGTAAT
Found at i:108227194 original size:3 final size:3
Alignment explanation
Indices: 108227186--108227241 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
108227176 AATGTATTTA
*
108227186 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
108227234 AAT AAT AA
1 AAT AAT AA
108227242 GTAAATAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:108228800 original size:51 final size:51
Alignment explanation
Indices: 108228739--108228909 Score: 130
Period size: 51 Copynumber: 3.5 Consensus size: 51
108228729 GACCTATTCT
* *
108228739 ACTGCTACTTCAAAGAGATAAGATC-CGTAACTTGTAGCTTCAATCTGCTCC
1 ACTGCAACTTCAAAGAAATAAGATCTCGTAACTT-TAGCTTCAATCTGCTCC
*
108228790 ACTGCAACTTC-AAGAAAATAAGATTCTC-TATCTTTAG--T---T-TGCTCC
1 ACTGCAACTTCAAAG-AAATAAGA-TCTCGTAACTTTAGCTTCAATCTGCTCC
* * ** * *
108228835 TATTGCAACTTTAGGGAGA-AAGA-CTCGCAACTTTTAGCTTCAATCTGCTCC
1 -ACTGCAACTTCAAAGAAATAAGATCTCGTAAC-TTTAGCTTCAATCTGCTCC
*
108228886 ACTGCAACTTCAAGGAAATAAGAT
1 ACTGCAACTTCAAAGAAATAAGAT
108228910 TTGTCATCTT
Statistics
Matches: 91, Mismatches: 14, Indels: 29
0.68 0.10 0.22
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 15 0.16
46 12 0.13
47 2 0.02
49 1 0.01
50 18 0.20
51 30 0.33
52 7 0.08
53 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (51 bp):
ACTGCAACTTCAAAGAAATAAGATCTCGTAACTTTAGCTTCAATCTGCTCC
Found at i:108228962 original size:96 final size:97
Alignment explanation
Indices: 108228745--108228963 Score: 266
Period size: 96 Copynumber: 2.3 Consensus size: 97
108228735 TTCTACTGCT
* * *
108228745 ACTTCAAAGAGATAAGATCCGTAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATA
1 ACTTCAAGGAGATAAGATCTGCAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATA
* * * * *
108228810 AGATTCTCTATCTTTAGTTTGCTCCTATTGCA
66 AGATTCTCTATCTTCAGTCTACTCCTACTACA
* * * *
108228842 ACTTTAGGGAGA-AAGA-CTCGCAACTTTTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAAAT
1 ACTTCAAGGAGATAAGATCT-GCAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAAT
*
108228905 AAGATT-TGTCATCTTCAGTCTACTCC-ACTACA
65 AAGATTCTCT-ATCTTCAGTCTACTCCTACTACA
*
108228937 ACTTCAAGGAGATAAGATCTACAACTT
1 ACTTCAAGGAGATAAGATCTGCAACTT
108228964 CAATTTGCTC
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
95 17 0.17
96 74 0.73
97 11 0.11
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (97 bp):
ACTTCAAGGAGATAAGATCTGCAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATA
AGATTCTCTATCTTCAGTCTACTCCTACTACA
Found at i:108228985 original size:44 final size:45
Alignment explanation
Indices: 108228872--108228998 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
108228862 CAACTTTTAG
* * * *
108228872 CTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGTCAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
* * *
108228917 CTTCAGTCTACTCCACTACAACTTCAAGGAGATAAGATCT-ACAA
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
* * * *
108228961 CTTCAATTTGCTCCACTGCTACTTCAGGGAGATGAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGAT
108228999 TTGTGGATTC
Statistics
Matches: 68, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 33 0.49
45 35 0.51
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
Found at i:108231870 original size:40 final size:40
Alignment explanation
Indices: 108231826--108232131 Score: 426
Period size: 40 Copynumber: 7.7 Consensus size: 40
108231816 GCTACTTGCT
*
108231826 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
108231866 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
108231906 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
108231945 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
108231985 CAAATTCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
108232024 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
108232064 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
108232103 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
108232132 CATCCGAATA
Statistics
Matches: 236, Mismatches: 21, Indels: 18
0.86 0.08 0.07
Matches are distributed among these distances:
38 3 0.01
39 100 0.42
40 130 0.55
41 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:108232128 original size:79 final size:79
Alignment explanation
Indices: 108231826--108232131 Score: 524
Period size: 79 Copynumber: 3.9 Consensus size: 79
108231816 GCTACTTGCT
* * * *
108231826 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
*
108231890 GATATAGTAACTCGCA
64 GTTATAGTAACTCGCA
108231906 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
108231971 TATAGTAACTCGCA
66 TATAGTAACTCGCA
*
108231985 CAAATTCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
108232050 TATAGTAACTCGCA
66 TATAGTAACTCGCA
*
108232064 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
108232129 TAT
66 TAT
108232132 CATCCGAATA
Statistics
Matches: 217, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
79 202 0.93
80 15 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
TATAGTAACTCGCA
Found at i:108242555 original size:27 final size:28
Alignment explanation
Indices: 108242498--108242567 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
108242488 AAATTTGTAC
**
108242498 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
108242526 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
108242553 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
108242568 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:108242576 original size:27 final size:27
Alignment explanation
Indices: 108242498--108242579 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
108242488 AAATTTGTAC
* *
108242498 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
108242526 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
108242553 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
108242580 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:108250481 original size:27 final size:28
Alignment explanation
Indices: 108250424--108250493 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
108250414 AAATTTGTAC
**
108250424 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
108250452 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
108250479 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
108250494 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:108250502 original size:27 final size:27
Alignment explanation
Indices: 108250424--108250505 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
108250414 AAATTTGTAC
* *
108250424 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
108250452 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
108250479 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
108250506 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:108263507 original size:39 final size:39
Alignment explanation
Indices: 108263455--108263580 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
108263445 TATGAGATTG
108263455 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
108263494 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
108263533 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
108263572 AAAATATCC
1 AAAATATCC
108263581 AGGTTAAAGA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:108263596 original size:78 final size:76
Alignment explanation
Indices: 108263454--108263608 Score: 204
Period size: 78 Copynumber: 2.0 Consensus size: 76
108263444 GTATGAGATT
* * *
108263454 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
*
108263519 GGCTATATGCTA
66 GGCT-TACGCTA
* * **
108263531 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCAGGTTA-AAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCC-GGACATAAGACCCG
108263595 CAGGCTTACGCTA
64 CAGGCTTACGCTA
108263608 G
1 G
108263609 TAATGTATTC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 11 0.16
78 54 0.79
79 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
GGCTTACGCTA
Found at i:108267016 original size:19 final size:19
Alignment explanation
Indices: 108266992--108267031 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
108266982 AGGGGGCACG
108266992 CCCGTGTGCTCTTGACACA
1 CCCGTGTGCTCTTGACACA
*
108267011 CCCGTGTGCTCTTGCCACA
1 CCCGTGTGCTCTTGACACA
108267030 CC
1 CC
108267032 TGGGTCCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.42, G:0.20, T:0.25
Consensus pattern (19 bp):
CCCGTGTGCTCTTGACACA
Found at i:108272387 original size:40 final size:40
Alignment explanation
Indices: 108272302--108272452 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
108272292 AATTGAATGA
* * *
108272302 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
108272342 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
108272383 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
108272422 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
108272453 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:108272466 original size:40 final size:40
Alignment explanation
Indices: 108272338--108272468 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
108272328 TATGCTGGAA
* * *
108272338 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
108272378 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
108272418 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
108272458 ATTATATCCGG
1 ATTATATCCGG
108272469 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:108281726 original size:40 final size:39
Alignment explanation
Indices: 108281681--108281809 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
108281671 CGGAATATAA
108281681 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
108281721 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
108281759 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
108281799 CCGGATATAAT
1 CCGGATATAAT
108281810 TTCCAGCATA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
38 32 0.44
40 41 0.56
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:108281746 original size:38 final size:37
Alignment explanation
Indices: 108281697--108281805 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 37
108281687 ATAATCACGT
*
108281697 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCAA-CTA
*
108281735 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TAGCAACTA
*
108281775 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
108281806 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
38 30 0.48
39 2 0.03
40 30 0.48
41 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:108281823 original size:40 final size:40
Alignment explanation
Indices: 108281681--108281845 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
108281671 CGGAATATAA
* ** *
108281681 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
*
108281721 CCGGATAGAATCT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * *
108281759 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
108281799 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
108281838 CCGGATAT
1 CCGGATAT
108281846 CATTCAATTT
Statistics
Matches: 101, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
38 29 0.29
39 16 0.16
40 56 0.55
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:108289708 original size:40 final size:40
Alignment explanation
Indices: 108289663--108289830 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
108289653 CGGAATATAA
108289663 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
108289703 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
108289743 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
108289783 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
108289823 CCGGATAT
1 CCGGATAT
108289831 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:108289813 original size:80 final size:80
Alignment explanation
Indices: 108289679--108289828 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
108289669 ATAATCACGT
*
108289679 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
108289743 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
108289759 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
108289822 CCCGGAT
64 CCCGGAT
108289829 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:108292420 original size:29 final size:29
Alignment explanation
Indices: 108292387--108292451 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
108292377 GTGACGAGAT
108292387 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
108292416 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
108292445 CGGCACT
1 TGGCACT
108292452 GGGTCTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:108298903 original size:24 final size:25
Alignment explanation
Indices: 108298832--108298901 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
108298822 GAGGAAGTGC
* * *
108298832 AAAAGGGCTTTTGCCCTAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTATCA
*
108298858 AAAAGGGATTT-CCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
108298882 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
108298902 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 20 0.53
25 11 0.29
26 7 0.18
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:108298914 original size:24 final size:24
Alignment explanation
Indices: 108298882--108298928 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
108298872 CAGTTTATCA
**
108298882 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAAGCCTCCAGTTATT
108298905 AAAAGAGGCTAAGCCTCCAGTTAT
1 AAAAG-GGCTAAGCCTCCAGTTAT
108298929 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAAGCCTCCAGTTATT
Found at i:108299157 original size:30 final size:31
Alignment explanation
Indices: 108299121--108299203 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
108299111 CATTTATAGC
*
108299121 AAAGGCTTCAGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
108299151 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
108299182 AAAGGCTTCGGGCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
108299204 TTGAGATTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 25 0.53
31 22 0.47
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:108306277 original size:25 final size:24
Alignment explanation
Indices: 108306233--108306317 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 24
108306223 GGAGGAAGTG
108306233 CAAAAGGGCTTTTGCCCCAGTTTACT
1 CAAAAGGGC-TTTGCCCCAGTTTA-T
*
108306259 GAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTGCCCCAGTTTAT
108306283 CAAGAAGGGCTTTGCCCCAG-TTAT
1 CAA-AAGGGCTTTGCCCCAGTTTAT
*
108306307 TAAAAGAGGCT
1 CAAAAG-GGCT
108306318 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
23 3 0.06
24 13 0.24
25 30 0.56
26 8 0.15
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:108306559 original size:30 final size:31
Alignment explanation
Indices: 108306525--108306607 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
108306515 CGTTTACAGT
108306525 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
108306555 AAAGGCTTCGGCCCAGTGACATGAATAATGG
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
108306586 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
108306608 TTGAGATTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 26 0.53
31 23 0.47
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:108306590 original size:31 final size:30
Alignment explanation
Indices: 108306525--108306602 Score: 129
Period size: 31 Copynumber: 2.6 Consensus size: 30
108306515 CGTTTACAGT
*
108306525 AAAGGCTTCGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
108306555 AAAGGCTTCGGCCCAGTGACATGAATAATGG
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
108306586 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
108306603 ATATGTTGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 22 0.49
31 23 0.51
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:108320679 original size:40 final size:40
Alignment explanation
Indices: 108320622--108320806 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
108320612 TCGAATGATG
* * * *
108320622 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
108320662 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
108320702 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
108320741 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
108320782 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
108320807 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 40 0.31
40 80 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:108320828 original size:79 final size:78
Alignment explanation
Indices: 108320656--108320829 Score: 185
Period size: 79 Copynumber: 2.2 Consensus size: 78
108320646 GTGCTAAGTG
* *
108320656 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGACTAAGATCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGACTAAGATCCGAAGG
**
108320721 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* * *
108320735 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCC-GACTAAGAT-CCG
*
108320797 AAGGTATTTGAACGAG-T
61 AAGGCATTTGAACGAGTT
108320814 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
108320830 ACTCCGAGGT
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
78 1 0.01
79 47 0.59
80 32 0.40
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGACTAAGATCCGAAGGC
ATTTGAACGAGTT
Found at i:108328721 original size:40 final size:40
Alignment explanation
Indices: 108328620--108328809 Score: 247
Period size: 40 Copynumber: 4.7 Consensus size: 40
108328610 TACTCGAATG
* *
108328620 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
108328661 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
*
108328701 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
108328741 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
108328781 ATAACCGGGTTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
108328810 AATGAGTAGC
Statistics
Matches: 132, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 102 0.77
41 28 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:108328823 original size:40 final size:40
Alignment explanation
Indices: 108328620--108328832 Score: 176
Period size: 40 Copynumber: 5.3 Consensus size: 40
108328610 TACTCGAATG
* * *
108328620 ATATCCGGGCTAAGTCCCGAAGGCTTTTG-TGCTAAG-CGACT
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGATGC--AGTAG-CT
* ** *
108328661 ACATCCGGACTAAGAT-CCGAAGGCATTTG-TGCTAGTAACT
1 ATATCCGGGTTAAG-TCCCGAAGGCATTTGATGC-AGTAGCT
*
108328701 ATATCCGGGCTAAGTCCCGAAGGCATTT-ATGCTAGT-GACT
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGATGC-AGTAG-CT
108328741 ATATCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTA-CT
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGATGC-AG-TAGCT
* *
108328781 ATAACCGGGTTATGTCCCGAAGGCATTTGAATG-AGTAGCT
1 ATATCCGGGTTAAGTCCCGAAGGCATTTG-ATGCAGTAGCT
108328821 ATATCC-GGTTAA
1 ATATCCGGGTTAA
108328833 ACTCCGAAGG
Statistics
Matches: 146, Mismatches: 15, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
39 8 0.05
40 107 0.73
41 28 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGTTAAGTCCCGAAGGCATTTGATGCAGTAGCT
Found at i:108328823 original size:80 final size:78
Alignment explanation
Indices: 108328624--108328832 Score: 226
Period size: 80 Copynumber: 2.6 Consensus size: 78
108328614 CGAATGATAT
* * * * *
108328624 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTATGC--AGTGACTATATCCGG-TTAAG-TCCCGAAGGCATT
* *
108328688 TGTGCTAGTAACTATAT
62 TGTGCGAGTAACTATAA
108328705 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTATGC-AGTGACTATATCC-GGTTAAGTCCCGAAGGCATTTG
*
108328770 TGCGAGTTACTATAA
64 TGCGAGTAACTATAA
* *
108328785 CCGGGTTATGTCCCGAAGGCATTTGAATG-AGT-AGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTT--ATGCAGTGA-CTATATCCGGTTAA
108328833 ACTCCGAAGG
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
79 8 0.07
80 73 0.65
81 28 0.25
82 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCAGTGACTATATCCGGTTAAGTCCCGAAGGCATTTGTG
CGAGTAACTATAA
Found at i:108331219 original size:40 final size:38
Alignment explanation
Indices: 108331171--108331392 Score: 264
Period size: 40 Copynumber: 5.9 Consensus size: 38
108331161 AGTTATATAG
* *
108331171 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-A-GTTGTAT
108331211 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT--TGTAT
* *
108331251 CTGGGCTAAGTTTCGAAGAGCATTCGTGCTAG-TG-AT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTGTAT
*
108331287 ----G-T-A-TTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT--TGTAT
108331320 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT--TGTAT
108331360 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
108331393 GATATATCCA
Statistics
Matches: 163, Mismatches: 6, Indels: 26
0.84 0.03 0.13
Matches are distributed among these distances:
29 22 0.13
30 1 0.01
31 1 0.01
32 3 0.02
33 2 0.01
36 2 0.01
37 3 0.02
38 3 0.02
39 2 0.01
40 124 0.76
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (38 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTGTAT
Found at i:108331303 original size:29 final size:29
Alignment explanation
Indices: 108331261--108331319 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
108331251 CTGGGCTAAG
108331261 TTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TTTCGAAGAGCATTCGTGCTAGTGATGTA
108331290 TTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TTTCGAAGAGCATTCGTGCTAGTGATGTA
108331319 T
1 T
108331320 CCGGGCTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.36
Consensus pattern (29 bp):
TTTCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:108331337 original size:69 final size:69
Alignment explanation
Indices: 108331224--108331359 Score: 236
Period size: 69 Copynumber: 2.0 Consensus size: 69
108331214 GGCTAAGTTC
* * *
108331224 CGAAGAGCATTCGTGCTAGTAATGTATCTGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGT
1 CGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
108331289 ATTT
66 ATTT
*
108331293 CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
1 CGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
108331358 AT
66 AT
108331360 CCGGGCTAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (69 bp):
CGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
ATTT
Found at i:108331377 original size:109 final size:109
Alignment explanation
Indices: 108331184--108331395 Score: 372
Period size: 109 Copynumber: 1.9 Consensus size: 109
108331174 GGCTAAGTCC
*
108331184 CGAAGAGCATTCGTGCTGATGTTATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
1 CGAAGAGCATTCGTGCTGATGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
* *
108331249 ATCTGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATTT
66 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTT
*
108331293 CGAAGAGCATTCGTGCT-AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 CGAAGAGCATTCGTGCTGA-TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
108331357 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
65 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
108331396 ATATCCAAGC
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 1 0.01
109 97 0.99
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (109 bp):
CGAAGAGCATTCGTGCTGATGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGT
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATTT
Found at i:108331521 original size:29 final size:28
Alignment explanation
Indices: 108331440--108331539 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
108331430 GAGTTATGAG
* * * *
108331440 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
**
108331468 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
* *
108331496 GGCACTATGTGTGTGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
108331525 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
108331540 AATCAGTCAG
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 34 0.60
29 23 0.40
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:108333719 original size:27 final size:29
Alignment explanation
Indices: 108333625--108333722 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
108333615 TCACAAATTG
* *
108333625 GCACTAAGTGTGCGGGTTC-AAATTATACA
1 GCACTAAGTGTGCGAGTTCGATA-TATACA
* * *
108333654 GCACTAAGTGTGCAAGTTTGAT-TATATA
1 GCACTAAGTGTGCGAGTTCGATATATACA
108333682 GCACTAAGTGTGCGAGTTCGATAT-TA-A
1 GCACTAAGTGTGCGAGTTCGATATATACA
108333709 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
108333723 GGCTTATTGC
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
27 15 0.25
28 27 0.45
29 17 0.28
30 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGATATATACA
Found at i:108337935 original size:47 final size:47
Alignment explanation
Indices: 108337876--108338801 Score: 1327
Period size: 47 Copynumber: 19.4 Consensus size: 47
108337866 GATGTACAAG
* * *
108337876 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
108337923 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
108337970 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
108338017 GTGTATATATGCGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
108338064 GTGTATATATGTGATAAGACCTAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
108338111 GTGTATATATGTGATAATGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
108338158 GTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
108338205 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
108338252 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
108338299 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
108338346 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
108338393 GTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
108338440 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAT
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
108338487 GTGATGAATGTGAAAGTGTATATATG-TGATAAGGCCGAATG-GCCAATGTGATGAATGTGAAA
1 GTG-T--ATAT--ATGTG-ATA-AGGCCGA-ATGGCC-AATGTG---ATG-A----ATGTGAAA
* *
108338549 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
108338596 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
108338643 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
108338690 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
108338737 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT-AGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATGTGAAA
*
108338784 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
108338802 TCCCGATGGG
Statistics
Matches: 800, Mismatches: 59, Indels: 40
0.89 0.07 0.04
Matches are distributed among these distances:
47 736 0.92
48 1 0.00
50 3 0.00
52 7 0.01
53 5 0.01
54 11 0.01
55 11 0.01
56 5 0.01
57 7 0.01
59 3 0.00
61 1 0.00
62 10 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Done.