Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 354 of 770
Found at i:108670044 original size:161 final size:163
Alignment explanation
Indices: 108669779--108670101 Score: 607
Period size: 161 Copynumber: 2.0 Consensus size: 163
108669769 GGAGAAACAA
108669779 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
*
108669844 TCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTAT-AAAGTGGTT-TGCTAGGCTT
66 TCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTT
108669907 AAGGTGAAAATAAATTGAATGAAAATTATTTTT
131 AAGGTGAAAATAAATTGAATGAAAATTATTTTT
108669940 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108670004 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCAT-AAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
108670069 TAAGGTGAAAATAAATTGAATGAAAATTATTTT
130 TAAGGTGAAAATAAATTGAATGAAAATTATTTT
108670102 ACAAGCCTAG
Statistics
Matches: 158, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
160 4 0.03
161 104 0.66
162 9 0.06
163 41 0.26
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.38
Consensus pattern (163 bp):
CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
TCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTT
AAGGTGAAAATAAATTGAATGAAAATTATTTTT
Found at i:108671483 original size:535 final size:541
Alignment explanation
Indices: 108669940--108674149 Score: 7601
Period size: 535 Copynumber: 7.9 Consensus size: 541
108669930 AATTATTTTT
108669940 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108670004 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
* *
108670069 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGG-AAAAGTGTAAATATGATG
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
108670133 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATG--AAAATTAGTAATTAAATGTTTAAAT
196 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
108670196 AAACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
261 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
* *
108670260 GGCTAGGGTTTTGTTTAAGCTTTACAAGCTTCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
326 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
108670325 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
391 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
108670390 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
456 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
108670455 TGTTTATGGTTGGAGAAACAA
521 TGTTTATGGTTGGAGAAACAA
108670476 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108670541 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
*
108670606 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGGCAAAAGTGTAAATATG--A
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
108670669 AAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAT--AA--AGTAATTAAATGTTTAAAT
196 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
108670729 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
261 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
108670794 GGCTAGGG-TTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
326 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
108670858 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
391 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
108670923 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
456 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
108670988 TGTTTATGGTTGGAGAAACAA
521 TGTTTATGGTTGGAGAAACAA
108671009 CTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAGGACTAATTTGTAAAAGTTAT-AAATTTG
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108671072 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
108671137 TAAGGTGAAAATAAATTGAATGAAAATTATTTT-CAAACCTA-GGG-AAAAGTGTAAATATGATA
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
108671199 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
196 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
108671264 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
261 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
108671329 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCT-CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
326 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
108671393 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
391 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
108671458 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
456 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
108671523 TGTTTATGGTTGGAGAAACAA
521 TGTTTATGGTTGGAGAAACAA
108671544 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT-
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108671607 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
* *
108671672 TAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCTAGGGGTAAAAGTGTAAATATGATG
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGAT-
108671736 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATG-TAAAATTTAGTAATTAAATGTTTAA
195 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA-TTAGTAATTAAATGTTTAA
108671800 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
259 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
108671865 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
324 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
108671930 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
389 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
*
108671995 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATATTGATGTTTAATGGTAGATTATG
454 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
108672060 CATGTTTATGGTTGGAGAAACAA
519 CATGTTTATGGTTGGAGAAACAA
108672083 CTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAA--ACTAATTTGTAAAAGTTATAAAATTT-
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108672144 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
* *
108672209 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-GGGTAAAAGTGTAAATATGATA
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
108672273 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT-AAATTAGTAATTAAATGTTTAAAT
196 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
108672337 AAAC--AA-AAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
261 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
108672399 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
326 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
*
108672464 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA-TTCTACCATTTATTTAAGTTATGAT
391 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
108672528 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
456 GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
108672593 TGTTTATGGTTGGAGAAACAA
521 TGTTTATGGTTGGAGAAACAA
108672614 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGT-AAAGTTATAAAATTTG
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108672678 -CATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
108672742 TAAGGTGAAAAT-AATTGAATG-AAATTATTTTACAAACCTA-GGG-AAAAGTGTAAATATGAT-
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
108672802 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
196 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA-TTAGTAATTAAATGTTTAAA
108672867 TAAACAAAATAAAAGCCAAATTTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
260 TAAACAAAATAAAAGCCAAA-TTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
108672932 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCG-TTTTAAT
324 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
108672996 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAG-T-TG
389 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
108673059 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA-TTTGATGTTTAATGGTAGATTATG
454 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
108673123 CATGTTTATGGTTGGAGAAACAA
519 CATGTTTATGGTTGGAGAAACAA
108673146 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGT-AAAGTTATAAATATTT
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAA-ATTT
108673210 -TCATAAAAGTGTGATTTAGTGGAAATTGTGGG-TTTTATAGTT-TGAAAGTGGTTC-GCTAGGC
65 GTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
108673271 TTAAGGTGAAAATAAATTGAATGAAAATTATTTTAC-AA-GTAGGGGCAAAAGTGTAAATATGAT
130 TTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGAT
108673334 AAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATT--TAAGATTAAATGTTTA
195 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGT-A-ATTAAATGTTTA
108673396 AATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCAC
258 AATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCAC
108673460 CATGGCTAGGGTTTTGTTTAAGC-TT-CAAGCT-CATAGTAAGTCCGTTCTTGCCCCG-TTTTAA
323 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
108673521 TGATTTTCACGTTTTTGAAATCCTTGTAAC-TGATCTACCTATTTCTACCATTTATTTGAGTTAT
388 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
108673585 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
453 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
108673650 GCATGTTTATGGTTGGAGAAACAA
518 GCATGTTTATGGTTGGAGAAACAA
108673674 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAA-TTGTAAAAGTTATAAAATTTG
1 CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
108673738 TCATAAAAGTGTGATTTAGTGGAAATTGT-GG--TTTATAGTTATGAAAGTGGTTCGGC-A-G-T
66 TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
108673797 TAAGGT-AAAATAAATTGAATGAAAATTA-TTTAC-AACCTAGGGGCAAAAGTGTAAATATGAT-
131 TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
*
108673858 AAATTTA-GGGCAAAAATGTAATTTTTGCCATAG--T-A-AAATTTAGTAATTAAATGTTTAAAT
196 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
108673918 -AACAAAAT-AAAGCC-AATTTTGGTCA--TTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
261 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
108673978 GGCTAGGGTTTTGTTTAAGC-TT-CAAGCT-CATAGTAAGT-CGTTCTTGCCCCG-TTTTAATGA
326 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
108674038 TTTTCACGTTTTTGAAAT-CTTGTAACAT-ATCTACCTATTTCTACCATTTA-TT-AGTTATGAT
391 TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
108674099 GAAGGTTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTA
456 GAAGG-TCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTA
108674150 GTTTTTTAGT
Statistics
Matches: 3603, Mismatches: 13, Indels: 140
0.96 0.00 0.04
Matches are distributed among these distances:
511 14 0.00
512 47 0.01
513 30 0.01
514 41 0.01
515 73 0.02
517 15 0.00
518 9 0.00
519 20 0.01
520 2 0.00
521 2 0.00
522 19 0.01
523 20 0.01
524 46 0.01
525 37 0.01
526 71 0.02
527 71 0.02
528 149 0.04
529 110 0.03
530 82 0.02
531 360 0.10
532 359 0.10
533 479 0.13
534 128 0.04
535 557 0.15
536 207 0.06
537 247 0.07
538 193 0.05
539 215 0.06
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (541 bp):
CTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG
TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCT
TAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGGCAAAAGTGTAAATATGATA
AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTAGTAATTAAATGTTTAAAT
AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCAT
GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
TTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGAT
GAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCA
TGTTTATGGTTGGAGAAACAA
Found at i:108674364 original size:397 final size:390
Alignment explanation
Indices: 108673773--108674553 Score: 1321
Period size: 397 Copynumber: 2.0 Consensus size: 390
108673763 TTGTGGTTTA
108673773 TAGTTATGAAAGTGGTTCGGCAGTTAAGGTAAAATAAATTGAATGAAAATTATTTACAACCTAGG
1 TAGTTATGAAAGTGGTTCGGCAGTTAAGGTAAAATAAATTGAATGAAAATTATTTACAACCTAGG
*
108673838 GGCAAAAGTGTAAATATGATAAATTTAGGGCAAAAATGTAATTTTTGCCATAGTAAAATTTAGTA
66 GGCAAAAGTGTAAATATGAAAAATTTAGGGCAAAAATGTAATTTTTGCCATAGTAAAATTTAGTA
108673903 ATTAAATGTTTAAATAACAAAATAAAGCCAATTTTGGTCATTCAACCCCTTGGCCGAAATTTTGA
131 ATTAAATGTTTAAATAACAAAATAAAGCCAATTTTGGTCATTCAACCCCTTGGCCGAAATTTTGA
108673968 AGACCACCATGGCTAGGGTTTTGTTTAAGC-TT-CAAGCT-CATAGTAAGT-CGTTCTTGCCCCG
196 AGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCG
108674029 -TTTTAATGATTTTCACGTTTTTGAAAT-CTTGTAACAT-ATCTACCTATTTCTACCATTTA-TT
261 TTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTT
108674090 -AGTTATGATGAAGGTTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAGTTT
326 GAGTTATGATGAAGG-TCTAGGGTTTGAACCATGTTATAAATTTGTGTA-TTTGATGTTTAGTTT
108674154 TT
389 TT
108674156 TAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAG
1 TAGTTATGAAAGTGGTTCGGC-A-G-TTAAGGT-AAAATAAATTGAATGAAAATTA-TTTACAA-
*
108674221 CCTAGGGGCAAAAGTGTAAATATGAGAAAATTTAGGGTAAAAATGTAATTTTT-CCATAGTATGA
60 CCTAGGGGCAAAAGTGTAAATATGA-AAAATTTAGGGCAAAAATGTAATTTTTGCCATAG--T-A
108674285 TAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAGCCAAATTTTGGTCATCTTCAACCCCT
121 -AAATTTAGTAATTAAATGTTTAAAT-AACAAAATAAAGCC-AATTTTGGTCA--TTCAACCCCT
108674350 TGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
181 TGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
108674415 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
246 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
108674480 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
311 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
108674545 TGATGTTTA
376 TGATGTTTA
108674554 ATGGTAGATT
Statistics
Matches: 372, Mismatches: 2, Indels: 27
0.93 0.00 0.07
Matches are distributed among these distances:
383 21 0.06
384 1 0.00
385 1 0.00
386 7 0.02
387 22 0.06
388 7 0.02
389 31 0.08
390 25 0.07
391 1 0.00
392 1 0.00
393 25 0.07
394 14 0.04
395 11 0.03
397 55 0.15
398 2 0.01
399 6 0.02
400 10 0.03
401 13 0.03
402 27 0.07
403 10 0.03
404 33 0.09
405 35 0.09
406 14 0.04
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (390 bp):
TAGTTATGAAAGTGGTTCGGCAGTTAAGGTAAAATAAATTGAATGAAAATTATTTACAACCTAGG
GGCAAAAGTGTAAATATGAAAAATTTAGGGCAAAAATGTAATTTTTGCCATAGTAAAATTTAGTA
ATTAAATGTTTAAATAACAAAATAAAGCCAATTTTGGTCATTCAACCCCTTGGCCGAAATTTTGA
AGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCG
TTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTT
GAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTGATGTTTAGTTTTT
Found at i:108678915 original size:536 final size:538
Alignment explanation
Indices: 108674150--108679307 Score: 9228
Period size: 535 Copynumber: 9.6 Consensus size: 538
108674140 TTGATGTTTA
108674150 GTTTTT-TAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
* *
108674214 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAGAAAATTTA-GGGTAAAAATGTAATTTTT-CCA
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGA-TAAATTTAGGGGCAAAAATGTAATTTTTGCCA
108674277 TAGTATGATAAATTTAGTAATTAAATGTTTAAATAAACAAAAT-AAAGCCAAATTTTGGTCATCT
130 TAGTATGATAAA-TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCT
108674341 TCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
194 TCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
108674406 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
259 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
108674471 TCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAAT
324 TCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAAT
108674536 TTGTGTA-TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAA
389 TTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAA
108674600 GTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG--ATAAAAGT
454 GTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAGT
108674663 GTGATTTAGTGGAAATTGTGG
518 GTGATTTAGTGGAAATTGTGG
108674684 G--TTTATAGTTATGAAAGTGGTTCGGCTAGG-TTAAGGTGAAAATAAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
*
108674746 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTTGCC
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAT-AAATTTAGGGGCAAAAATGTAA-TTTTTGCC
108674811 ATAGTATGATAATAATTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTTGGTCA
129 ATAGTATGAT-A-AATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAA-TTTTGGTCA
108674875 TCTTCAA-CCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTT-CAAG
191 TCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
* * *
108674938 CT-CATAGTAAGGTCCGTTCTTCCCCCATTTATAATGATTTTCACGTTTTTGAAATCCTTGTAAC
256 CTCCATAGTAA-GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
* * *
108675002 ATTATCTGCCTATTTCTACCATTTATTTAAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
320 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
*
108675067 AAATTTTTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTG
385 AAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTG
* *
108675132 CTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAGAGTTATAACATTTTTCATAA
450 CTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAA-ATTTGTCATAA
* *
108675197 AAGTGTGATTGAATGGAAATTGTGG
514 AAGTGTGATTTAGTGGAAATTGTGG
* *
108675222 GTTTTTATAGTCT-TGAAAGTGGTTTGGCTCGGCTTAAGGTGAAAATAAATTGAATG-AAATTAT
1 GTTTTTATAGT-TATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTAT
* **
108675285 TTTACAAGCCTAGGGGCAAAAGTGTAAATATGAGAAAATTTAGGGTAAAAAATGTAATTTTTGCC
65 TTTACAAGCCTAGGGGCAAAAGTGTAAATATGA-TAAATTTAGGGGCAAAAATGTAATTTTTGCC
* *
108675350 ATAGTATGAGAAAATGTAGTAATTAAATGTTTAAATAAACAAAATAAAATCCAAATTTTGGTCAT
129 ATAGTATGA-TAAAT-TAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
* * *
108675415 CTTCAAGCCCTTGGCCGAAATTTTGAAGACCACCGTGGCTAGGGTTTGGTTTAAGCTTTCCAAGC
192 CTTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
108675480 TCCATAGTAAGTCCGTTCTTTG-CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
257 TCCATAGTAAGTCCGTTC-TTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
108675544 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
321 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
108675609 AATTTGTGTATATTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTG
386 AATTTGTGTAT-TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTG
108675674 CTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAA
450 CTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAA
108675739 AGTGTGATTTAGTGGAAATTGTGG
515 AGTGTGATTTAGTGGAAATTGTGG
108675763 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAA-AAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
108675827 TTACAAG-CTA-GGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAA-TTTTGCCAT
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
*
108675889 AGTATGATAATTTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTGTGTCATCTT
131 AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTG-GTCATCTT
108675953 CAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
195 CAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
*
108676018 ATAGTAAGTCCGTTCTGTGCCCCGTTTTTAATGATTTT-ACATTTTTGAAATCCTTGTAACATGA
260 ATAGTAAGTCCGTTCT-TGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
108676082 TCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAAT
324 TCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAAT
108676147 TTGTGTA-TTTGATGTTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
389 TTGTGTATTTTGATG-TTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
108676211 AGTGATTTTCAATGAAAATGCT-AAAAGGACTAATTTGT-AAAGTTATAAAATTTGTCATAAAAG
453 AGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAG
108676274 TGTGATTTAGTGGAAATTGTGG
517 TGTGATTTAGTGGAAATTGTGG
108676296 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
*
108676361 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAT-AAATTTAGGGGCAAAAATGTAATTTTTGCCA
** *
108676426 TAGTATGATGTATGTAGTAATTAAATGTTTTAAAT-AACAAAATAAAAGCAAAATTTTGGTCATC
130 TAGTATGATAAAT-TAGTAATTAAATG-TTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
108676490 TTCAA-CCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
193 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
108676554 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
258 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
*
108676619 ATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTTTAGGGTTTGAACCATGTTATAAA
323 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
108676683 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
388 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
108676748 AGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAAAGT
453 AGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAAAGT
108676813 GTGATTTAGTGGAAATTGTGG
518 GTGATTTAGTGGAAATTGTGG
108676834 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
108676898 TTACAAGCCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAT-AAATTTAGGGGCAAAAATGTAATTTTTGCCA
**
108676963 TAGTATGATAAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTATCAT-T
130 TAGTATGAT-AAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCT
108677027 TCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTT-CAAGCT-
194 TCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
*
108677090 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATTA
259 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
108677155 TCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAAAT
324 TCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAAT
108677219 TT-TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAA
389 TTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAA
108677283 GTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGT
454 GTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAGT
108677347 GTGATTTAGTGGAAATTGTGG
518 GTGATTTAGTGGAAATTGTGG
108677368 GTTTTTATAG-T-TGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
* * *
108677431 TTACAAGCCTA-GGGTAAAAGTGTAAATATGAGAAATTTA-GGGTAAAAATGTAATTTTTGCCAT
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
*
108677494 AGTATGATAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTC
131 AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTC
108677559 AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
196 AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
108677624 TAGTAAGTCCGTTCTTGCCCCG-TTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
261 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
108677688 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
326 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
*
108677753 TTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
391 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
* *
108677818 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAGAGTTATAACATTTTTCATAAAAGTGT
456 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAA-ATTTGTCATAAAAGTGT
* *
108677883 GATTGAATGGAAATTGTGG
520 GATTTAGTGGAAATTGTGG
108677902 GTTTTTATAGTT-TGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
*
108677965 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAGAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
108678030 AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAA--CAAATTTTGGTCATCTTC
131 AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTC
108678093 AA-CCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT-CA
196 AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
108678156 TAGTAAGTCCGTTCTTGCCCCG-TTTT--TGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
261 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
108678218 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
326 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
108678283 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
391 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
108678348 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCAT-AAAGTGTG
456 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAAAGTGTG
108678412 ATTTAGTGGAAATTGTGG
521 ATTTAGTGGAAATTGTGG
108678430 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
*
108678495 TTACAAACCTAGGGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
108678560 AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAAT-AAAGCCAAATTTTGGTCATCTTC
131 AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTC
108678624 AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
196 AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
108678689 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
261 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
108678754 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
326 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
108678819 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
391 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
108678884 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAAAGTGTG
456 GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAAAGTGTG
108678949 ATTTAGTGGAAATTGTGG
521 ATTTAGTGGAAATTGTGG
108678967 GTTTTT-TAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
1 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
108679031 TTACAAGCCTA-GGG-AAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
66 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAT-AAATTTAGGGGCAAAAATGTAATTTTTGCCA
*
108679094 TAGTATGATTAATGTAGT--TTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCT
130 TAGTATGATAAAT-TAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCT
108679157 TCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTT-CAAGCT-
194 TCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
108679220 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
259 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
108679285 TCTACCTATTTCTACCATTTATT
324 TCTACCTATTTCTACCATTTATT
108679308 ATTTAATTTT
Statistics
Matches: 4466, Mismatches: 83, Indels: 151
0.95 0.02 0.03
Matches are distributed among these distances:
528 36 0.01
529 104 0.02
530 412 0.09
531 112 0.03
532 282 0.06
533 447 0.10
534 407 0.09
535 683 0.15
536 619 0.14
537 386 0.09
538 325 0.07
539 113 0.03
540 186 0.04
541 239 0.05
542 115 0.03
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (538 bp):
GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
TTACAAGCCTAGGGGCAAAAGTGTAAATATGATAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
AGTATGATAAATTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTC
AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTT
GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
GATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTGTCATAAAAGTGTG
ATTTAGTGGAAATTGTGG
Found at i:108680870 original size:27 final size:28
Alignment explanation
Indices: 108680839--108680934 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
108680829 ATTTAAACCC
*
108680839 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
108680866 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
108680893 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
108680921 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
108680935 TGATCTACGC
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
26 6 0.10
27 20 0.32
28 37 0.59
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.46
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:108681584 original size:27 final size:27
Alignment explanation
Indices: 108681554--108681615 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
108681544 GGGCAAAATG
108681554 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
108681581 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
108681608 GTAATTTT
1 GTAATTTT
108681616 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:108681727 original size:27 final size:27
Alignment explanation
Indices: 108681598--108681720 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
108681588 TACCCTACAG
*
108681598 GGGTATTTTAGTAATTTT-TCAAACC-A
1 GGGTATTTTGGTAATTTTAT-AAACCAA
* *
108681624 TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
108681651 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
108681678 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
108681705 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
108681721 CTGTAAATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.24
27 62 0.76
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:108681734 original size:27 final size:27
Alignment explanation
Indices: 108681704--108681774 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
108681694 TTATAAACCA
* *
108681704 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
108681731 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
108681758 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
108681775 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:108681736 original size:54 final size:54
Alignment explanation
Indices: 108681598--108681720 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
108681588 TACCCTACAG
* *
108681598 GGGTATTTTAGTAATTTTTCAAACCA-TGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
108681651 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
108681705 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
108681721 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
53 25 0.39
54 39 0.61
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:108685032 original size:28 final size:28
Alignment explanation
Indices: 108684985--108685081 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
108684975 ATTTAAACCC
*
108684985 TAGGGGT-ATATT-GGTAATTTTGCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
108685012 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
108685040 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
108685068 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
108685082 TGATCTACGC
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 9 0.14
28 56 0.86
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:108685732 original size:27 final size:27
Alignment explanation
Indices: 108685702--108685763 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
108685692 GGGCAAAATG
108685702 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
108685729 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
108685756 GTAATTTT
1 GTAATTTT
108685764 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:108685777 original size:54 final size:54
Alignment explanation
Indices: 108685719--108685869 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
108685709 TACCCCACAA
** * * *
108685719 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
108685773 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
108685827 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
108685870 CTGTAAATTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:108685835 original size:81 final size:81
Alignment explanation
Indices: 108685717--108685869 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
108685707 TTTACCCCAC
** *
108685717 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
108685781 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
108685798 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
108685862 TGGTAATT
65 TGGTAATT
108685870 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:108685876 original size:27 final size:27
Alignment explanation
Indices: 108685746--108685869 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
108685736 TACCCTACAG
* *
108685746 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
108685773 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
108685800 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
108685827 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
108685854 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
108685870 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:108685883 original size:27 final size:27
Alignment explanation
Indices: 108685853--108685923 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
108685843 TTATAAACCA
* *
108685853 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
108685880 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
108685907 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
108685924 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:108685885 original size:54 final size:54
Alignment explanation
Indices: 108685746--108685869 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
108685736 TACCCTACAG
* *
108685746 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
108685800 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
108685854 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
108685870 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:108685895 original size:81 final size:81
Alignment explanation
Indices: 108685743--108685896 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
108685733 TTTTACCCTA
* * ***
108685743 CAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
*
108685808 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* * * ***
108685824 CAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTGTAAATTGAGGGTAAA
1 CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAA
*
108685888 ACGGTAATT
65 ACAGTAATT
108685897 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:108688620 original size:541 final size:540
Alignment explanation
Indices: 108686970--108689460 Score: 4310
Period size: 540 Copynumber: 4.6 Consensus size: 540
108686960 GGGTGTTACA
108686970 ACCATGGCTA-GGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTT
1 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTT
* * *
108687034 AATGATTTTCACATTCTTGAAATCCTTGTAACATGATCTACCAATTTCTACCATTTATTTGAGTT
66 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
108687099 ATGATGAAGGTCTAGGGTTTG-ACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
131 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
* *
108687163 ATGCATGTTAATGGTTGGAGAAACAAGTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
196 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
* *
108687228 CTAATTTGCAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
261 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
* *
108687293 GTTATGAAAGTGGATCGGCTAGGCTTAAATTGAAAATAAATTGAAAGAAAATTATTTTAAAAGCT
326 GTTATGAAAGTGGATCGGCTAGGCTTAAAGTGAAAATAAATTGAAAGAAAATTATTTTAAAAGCC
108687358 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATA
391 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
108687422 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
456 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
108687487 CGGCCGAAATTTTGAAGACC
521 CGGCCGAAATTTTGAAGACC
*
108687507 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCGAGCTCCATAGTAAG-TCTGTTCTTGCCCCGTTTT
1 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTC-GTTCTTGCCCCGTTTT
*
108687571 TAATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTTATTTGAGT
65 TAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGT
* *
108687636 TATGATGGAGGTCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGAT
130 TATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGAT
*
108687701 TATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGG
195 TATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGG
108687766 ACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTA
260 ACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGGGTTTTTA
* * * *
108687830 TAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAT
324 TAGTTATGAAAGTGGATCGGCTAGGCTTAAAGTGAAAATAAATTGAAAGAAAATTATTTTAAAAG
** * * * * *
108687895 CCTAGCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAGTTTTTGACGTAGTATGA
389 CCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
*
108687960 TAAAATTTAGTGATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
454 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
108688025 CTCGGCCGAAATTTTGAAGACC
519 CTCGGCCGAAATTTTGAAGACC
* * *
108688047 ACCATGGCTAGGGTTTTGGTTAAGCTTTCCAAGCTCCGTAGTAAGTTCGTTCTTGCCCCGATTTT
1 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTT
* * * * * *
108688112 AATGATTTTCACATTCTTGAAATCCTTGTAACATGATCTATCTCTTTCTCCCATTTATTTGACTT
66 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
*
108688177 ATGATGAAGGTCTAGGGTTTGATCCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
131 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
* *
108688242 ATGCAAGTTTATGGTTTGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
196 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
**
108688307 CTAATTTGTAAAAGTTATAAAATTTGTGTTAACAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
261 CTAATTTGTAAAAGTTATAAAATTTGTCATAA-AGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
* * * *
108688372 AGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGC
325 AGTTATGAAAGTGGATCGGCTAGGCTTAAAGTGAAAATAAATTGAAAGAAAATTATTTTAAAAGC
* * *
108688437 CTAGGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAATAACGTAATTTTTGCCATAGTATGA
390 CTA-GGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
* *
108688501 TAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCAACCC
454 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
*
108688566 CTTGGCCGAAATTTTGAAGACC
519 CTCGGCCGAAATTTTGAAGACC
* * * *
108688588 ACCATGGCTAGGGTTTTGTTTAAGCGTTCCAAGCTCCATAATAAGTCCGTTTTTGCCCCGTTTTT
1 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTT
108688653 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
66 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
* *
108688718 ATGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTTTATTTTGATGTTTAATGGTAGATT
131 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
* *
108688783 ATGCATGTATATGGTTGGAGAAACAACTTTTGCTAAGTTATTTTCAATGAAAATGCTAAAAAGGA
196 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
108688848 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
261 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
* *
108688913 GTTATGAAAGTGGATCAGCTAGGCTTAAATTGAAAATAAATTGAAAGAAAATTATTTTAAAAGCC
326 GTTATGAAAGTGGATCGGCTAGGCTTAAAGTGAAAATAAATTGAAAGAAAATTATTTTAAAAGCC
108688978 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
391 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
108689043 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
456 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
*
108689108 CGACCGAAATTTTGAAGACC
521 CGGCCGAAATTTTGAAGACC
* * *
108689128 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCTATAGTAAGTCCGTTCTTGCCCCGTTTTT
1 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTT
*
108689193 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTAGTTGAGTT
66 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
108689258 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
131 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
108689323 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
196 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
*
108689388 CTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
261 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
108689453 GTTATGAA
326 GTTATGAA
108689461 TGTAGCACCC
Statistics
Matches: 1837, Mismatches: 107, Indels: 17
0.94 0.05 0.01
Matches are distributed among these distances:
537 12 0.01
538 141 0.08
539 275 0.15
540 899 0.49
541 498 0.27
542 12 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (540 bp):
ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTCGTTCTTGCCCCGTTTTT
AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
CTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
GTTATGAAAGTGGATCGGCTAGGCTTAAAGTGAAAATAAATTGAAAGAAAATTATTTTAAAAGCC
TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
CGGCCGAAATTTTGAAGACC
Found at i:108690446 original size:137 final size:136
Alignment explanation
Indices: 108690175--108690460 Score: 527
Period size: 137 Copynumber: 2.1 Consensus size: 136
108690165 TATTGGGCCT
**
108690175 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
108690240 AGCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
66 AGCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
108690305 ATATGC
131 ATATGC
*
108690311 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGTCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
108690376 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGGAACATCAGTAAA
66 AG-CCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108690441 CATATGC
130 CATATGC
108690448 AAGCCCATTTGGG
1 AAGCCCATTTGGG
108690461 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 64 0.44
137 81 0.56
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
ATATGC
Found at i:108692294 original size:27 final size:26
Alignment explanation
Indices: 108692249--108692359 Score: 170
Period size: 27 Copynumber: 4.2 Consensus size: 26
108692239 ACATGAATTC
108692249 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
108692275 TTATCATGAAAACATTTACCTAACCCA
1 TTATCATG-AAACATTTACCTAACCCA
*
108692302 TTATCATGGAACA-TTACCTAACCCTA
1 TTATCATGAAACATTTACCTAACCC-A
* *
108692328 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
108692354 TTATCA
1 TTATCA
108692360 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
25 11 0.14
26 33 0.41
27 36 0.45
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:108692341 original size:52 final size:53
Alignment explanation
Indices: 108692249--108692359 Score: 172
Period size: 52 Copynumber: 2.1 Consensus size: 53
108692239 ACATGAATTC
108692249 TTATCATGAAACATTTACCTAACCCATTATCATGAAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAAACATTTACCTAACCCA
* * *
108692302 TTATCATGGAACA-TTACCTAACCCTATTATCATG-GAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCC-ATTATCATGAAAACATTTACCTAACCCA
108692354 TTATCA
1 TTATCA
108692360 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
52 33 0.61
53 21 0.39
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.32
Consensus pattern (53 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAAACATTTACCTAACCCA
Found at i:108694734 original size:537 final size:541
Alignment explanation
Indices: 108692704--108704039 Score: 21025
Period size: 538 Copynumber: 21.1 Consensus size: 541
108692694 GGCGGTTACA
* * * *
108692704 ATGAAAGTGGATCGGCTAGGCTTAAATTGAAAATAAATTTAATGAAAATTATTTTAAAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108692769 GGTAAAAGTGTAAATATGATAAAATTTA-GGGCAAAAAT-TAATTTTTGCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108692832 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108692897 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT--ATAGTAAGTCC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108692960 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108693025 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108693090 ATGTTTAATGGTAGATTATGCATG-TTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108693154 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108693219 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
*
108693240 ATGAAAGTGGTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT--
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108693302 --TAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTT-CCGTAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108693363 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108693428 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-C
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
*
108693492 GTTCTTGCCCCGTTTTTAATGATTTTCAC-ATTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108693556 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108693621 ATGTTTAATGGTAGATTATGCATG-TTATGGTTGGAGAAACAACTTTTGCTAAGT-ATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108693684 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108693749 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
*
108693770 ATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108693834 GGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
**
108693898 TTTAGT-ATTAAATGTTTAAATAAACAAAATAAAAGAAAAATTTTGGTCATCTTCAACCCCT-GG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108693961 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108694026 GTTCTTGCCCCGTTTTTAATGATTTTCAC-TTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108694090 TACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108694154 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
*
108694219 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108694284 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
108694305 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTA-TTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108694369 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108694433 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
*
108694498 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCT
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108694563 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108694628 TACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAA-CATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108694691 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108694756 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108694821 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
108694842 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108694907 GGTAAAAGTGTAAATAAGATAAAATTTAGGGGC-AAAAT-TAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108694969 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108695034 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT--ATAGTAAGTCC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108695097 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108695162 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108695227 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108695292 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCAT-AAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108695355 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
* *
108695376 ATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108695441 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108695506 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108695571 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-C
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108695635 GTTCTTGCCCCG-TTTTAATGATTTTCA--TTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108695697 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108695762 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108695827 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108695892 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
108695913 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108695978 GGTTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTTGCCATAGTATGATAAA
66 GG-TAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAA
108696042 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
130 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
108696107 GCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-
195 GCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTC
108696171 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
260 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
108696236 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
325 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
108696301 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
390 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
108696366 TGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTG-CATAAAAGTGTGATTTAGTG
455 TGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTG
108696430 GAAATTGTGGGTTTTTATAGTT
520 GAAATTGTGGGTTTTTATAGTT
108696452 ATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108696516 GGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-TAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108696579 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108696644 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT--ATAGTAAGTCC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108696707 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA-C-----C
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108696766 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108696831 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108696896 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108696961 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
*
108696982 ATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAATAAATTGAATGAAAATTATTTTA-AAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108697046 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108697111 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108697176 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-C
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108697240 GTTCTTGCCCCGTTTTTAATGATTTTCA--TTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108697303 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108697368 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108697433 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108697498 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
108697519 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108697584 GGCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-TAATTTTTGCCATAGTATGATAA
66 GG--TAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
108697648 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
129 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
108697713 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAAGT
194 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
108697777 -CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATT
259 CCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATT
108697841 TCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTT
324 TCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTT
108697906 TGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCA
389 TGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCA
*
108697971 ATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAAGTGTGATTTAGT
454 ATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGT
108698036 GGAAATTGTGGGTTTTTATAGTT
519 GGAAATTGTGGGTTTTTATAGTT
108698059 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108698124 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108698188 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
*
108698253 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCT
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108698318 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
*
108698383 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
*
108698448 ATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108698513 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108698578 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
108698599 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108698664 GGTAAAAGTGTAAATAAGATAAAATTTAGGGGC-AAAAT-TAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108698726 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108698791 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108698856 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108698921 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108698986 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108699051 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTGTCAT-AAAGTGTGATTTAGTG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TTTGTCATAAAAGTGTGATTTAGTG
108699115 GAAATTGTGGGTTTTTATAGTT
520 GAAATTGTGGGTTTTTATAGTT
108699137 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTA-AAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108699201 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108699265 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108699330 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-C
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108699394 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108699459 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAA-CATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108699523 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108699588 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108699653 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
108699674 ATGAAAGTGGTTCGGCTAGGCTTAAAGTG-AAATAAATTGAATGAAAATTATTTTACAAGCCTA-
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
* *
108699737 GCTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-TAATTTTTGCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108699801 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
*
108699866 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
* *
108699931 GTTCTTGCCCCGTTTTTAATGATTTTCAC-ATTTTGAAATCCTTGTAACATGATCTA-CTCTTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108699994 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108700059 ATGTTTAATGGTAGATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108700123 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108700188 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
* *
108700209 ATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAG-CT--
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
* *
108700271 --TAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAA-TTTTACCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
* *
108700333 TTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108700397 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108700462 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108700527 TACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108700591 ATGTTTAATGGTAGATTATGCATG-TTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108700655 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108700720 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
*
108700741 ATGAAAGTGGTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT--
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108700803 --TAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-TAATTTTT-CCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108700864 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
108700929 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-C
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
*
108700993 GTTCTTGCCCCGTTTTTAATGATTTTCAC-ATTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108701057 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
108701122 ATGTTTAATGGTAGATTATGCATG-TTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108701186 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108701251 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
*
108701272 ATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA-AAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-
*
108701336 GGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAA
65 GGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAA
* *
108701400 ATTTAGCAGTTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
130 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
* * * *
108701465 GCCGAAATTTTGAAGACCACCATGGCTAGGATTTTATTTAAGCTTTCCAAGGTCTATAGTAAGTC
195 GCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTC
108701530 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
260 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
108701595 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
325 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
108701660 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
390 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
*
108701725 TGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAATTTTGTCAT-AAAGTGTGATTTAGTG
455 TGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTG
108701789 GAAATTGTGGGTTTTTATAGTT
520 GAAATTGTGGGTTTTTATAGTT
* * *
108701811 ATGAAAGTGG-TCGGCTAGGCTTAAATTGAAAATAAATTGAAAGAAAATTATTTTAAAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108701875 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108701940 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
*
108702005 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTT-CAAGCTCCATAGTAAGTCT
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
108702069 GTTCTTGCCCCG-TTTTAATGA-TTTCA--TTTTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
* *
108702130 TACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
*
108702195 ATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108702260 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108702324 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
*
108702345 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAATCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
** * *
108702410 CTTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCGTAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
* *
108702475 ATTAGTAATT-AATGTTTAAATAAACAAAATAGAAGCCAAATTTTGGTCATCTTCAA-CCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
* *
108702538 CCGAAATTTTGAAAACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTTC
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
* *
108702603 GTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTGTAACATGATCTACCTATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
*
108702668 TACCATTTATTTGACTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
* *
108702733 ATGTTTAATTGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTTATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
108702798 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108702863 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
* * *
108702884 ATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-
*
108702949 GGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAA
65 GGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAA
* * ** *
108703013 ATTTAGCAGTTAAATGTTTAAATAAACAAAATAAAAGAAAAATTTTGGTCATCTTCAACCCCTTG
130 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
*
108703078 GCCGAATTTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTC
195 GCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTC
108703143 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
260 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
*
108703208 CTACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
325 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
108703273 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
390 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
* *
108703338 TGAAAATGCTAAAAAGGACTAATTTGTAAAACTTATAAAATTTTTCATAAAAGTGTGATTTAGTG
455 TGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTG
108703403 GAAATTGTGGGTTTTTATAGTT
520 GAAATTGTGGGTTTTTATAGTT
* * *
108703425 ATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAATAAATTTAATGAAAATTATTGTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
*
108703490 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAA
66 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
108703555 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
131 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
* *
108703620 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG--CCATAGCAAGTCT
196 CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
*
108703683 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTT-AAATCCTTGTAACATGATCTACCAATTTC
261 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
108703747 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
326 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
*
108703812 ATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAAT
391 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
* *
108703877 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGCCATAAAAGTGTGATTTAATGG
456 GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
108703942 AAATTGTGGGTTTTTATAGTT
521 AAATTGTGGGTTTTTATAGTT
* *
108703963 ATGAAAGTGGTTCGGCTCGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTGACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
108704028 GGTAAAAGTGTA
66 GGTAAAAGTGTA
108704040 TGTAACACCC
Statistics
Matches: 10545, Mismatches: 159, Indels: 190
0.97 0.01 0.02
Matches are distributed among these distances:
529 174 0.02
530 318 0.03
531 849 0.08
532 665 0.06
533 285 0.03
534 763 0.07
535 872 0.08
536 899 0.09
537 1481 0.14
538 1647 0.16
539 944 0.09
540 1091 0.10
541 557 0.05
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (541 bp):
ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAA
TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
CCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
GAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
AAATTGTGGGTTTTTATAGTT
Found at i:108706652 original size:20 final size:20
Alignment explanation
Indices: 108706629--108706666 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
108706619 CACATCCAAA
*
108706629 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
108706649 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
108706667 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:108712982 original size:28 final size:28
Alignment explanation
Indices: 108712936--108713004 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
108712926 TTTAAAACCC
*
108712936 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
108712963 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
108712991 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
108713005 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:108713825 original size:12 final size:12
Alignment explanation
Indices: 108713808--108713832 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108713798 TATGTATGTT
108713808 TGAAAATTTTTA
1 TGAAAATTTTTA
108713820 TGAAAATTTTTA
1 TGAAAATTTTTA
108713832 T
1 T
108713833 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:108718900 original size:20 final size:20
Alignment explanation
Indices: 108718867--108718919 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
108718857 GGAAGAATAA
108718867 AGAAATGAAAAAAAA-AAAG
1 AGAAATGAAAAAAAACAAAG
*
108718886 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAACAAAG
108718907 A-AAA-GAAAAAAAA
1 AGAAATGAAAAAAAA
108718920 AGTGTTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (20 bp):
AGAAATGAAAAAAAACAAAG
Found at i:108720106 original size:29 final size:29
Alignment explanation
Indices: 108720073--108720155 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
108720063 GTGACGAGAT
108720073 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
108720102 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
108720131 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
108720156 AAATACGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:108720195 original size:59 final size:58
Alignment explanation
Indices: 108720069--108720204 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 58
108720059 TACGGTGACG
* * *
108720069 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
108720126 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
108720185 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
108720205 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
59 40 0.61
60 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:108724587 original size:35 final size:34
Alignment explanation
Indices: 108724548--108724633 Score: 118
Period size: 35 Copynumber: 2.4 Consensus size: 34
108724538 GACCCACCCC
* *
108724548 ACACAACAACATTGCACATAAGTGCATCCATCTTT
1 ACACAACAA-ACTGCACATAAGTGCATCCATCCTT
108724583 ACACAACCAAACTGCACATAAGTGCATCCATCCTT
1 ACACAA-CAAACTGCACATAAGTGCATCCATCCTT
*
108724618 ACACAACCAATCTGCA
1 ACACAA-CAAACTGCA
108724634 TCGAAGTGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 44 0.94
36 3 0.06
ACGTcount: A:0.38, C:0.33, G:0.08, T:0.21
Consensus pattern (34 bp):
ACACAACAAACTGCACATAAGTGCATCCATCCTT
Found at i:108726351 original size:28 final size:28
Alignment explanation
Indices: 108726311--108726417 Score: 169
Period size: 28 Copynumber: 3.8 Consensus size: 28
108726301 GCAATCAAAT
108726311 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
108726339 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
108726367 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
108726395 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
108726418 CGAATGATTC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 74 1.00
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:108729677 original size:28 final size:28
Alignment explanation
Indices: 108729639--108729745 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
108729629 GAATCATTCG
* *
108729639 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
108729667 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
108729695 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
108729723 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
108729746 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:108731984 original size:13 final size:13
Alignment explanation
Indices: 108731966--108731990 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108731956 GTGAATTAAT
108731966 GTGTGAAAATTTC
1 GTGTGAAAATTTC
108731979 GTGTGAAAATTT
1 GTGTGAAAATTT
108731991 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:108737899 original size:24 final size:24
Alignment explanation
Indices: 108737847--108738012 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
108737837 GCTTTATCAT
*
108737847 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
108737872 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
108737896 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
108737919 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
108737943 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
108737967 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
108737990 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108738013 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:108737923 original size:47 final size:48
Alignment explanation
Indices: 108737846--108738012 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
108737836 TGCTTTATCA
* *
108737846 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
108737895 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
108737942 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
108737989 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
108738013 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:108737964 original size:71 final size:71
Alignment explanation
Indices: 108737847--108738013 Score: 264
Period size: 71 Copynumber: 2.3 Consensus size: 71
108737837 GCTTTATCAT
* * *
108737847 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
108737911 GCCCTTTA
64 GCCCTTTA
* *
108737919 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
108737984 CCTTTA
66 CCTTTA
108737990 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
108738014 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.87
72 12 0.13
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:108738084 original size:9 final size:9
Alignment explanation
Indices: 108738070--108738126 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
108738060 ATCTCATGTG
108738070 CATATCATA
1 CATATCATA
*
108738079 CATATCATGTG
1 CATATCA--TA
108738090 CATATCATA
1 CATATCATA
* *
108738099 CATGTCATGTG
1 CATATCA--TA
108738110 CATATCATA
1 CATATCATA
108738119 CATATCAT
1 CATATCAT
108738127 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:108738086 original size:20 final size:20
Alignment explanation
Indices: 108738058--108738128 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
108738048 GCATTTATGA
*
108738058 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
108738078 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
108738098 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
108738118 ACATATCATGT
1 ACATATCATGT
108738129 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:108738093 original size:11 final size:11
Alignment explanation
Indices: 108738063--108738117 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
108738053 TATGAACATC
108738063 TCATGTGCATA
1 TCATGTGCATA
*
108738074 TCA--TACATA
1 TCATGTGCATA
108738083 TCATGTGCATA
1 TCATGTGCATA
* *
108738094 TCA--TACATG
1 TCATGTGCATA
108738103 TCATGTGCATA
1 TCATGTGCATA
108738114 TCAT
1 TCAT
108738118 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:108738207 original size:25 final size:24
Alignment explanation
Indices: 108738165--108738212 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
108738155 ATATATAAAC
* * *
108738165 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
108738190 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
108738213 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:108739418 original size:27 final size:27
Alignment explanation
Indices: 108739388--108739473 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
108739378 TACCATACAG
* *
108739388 GGGTATTTTGGTAGTTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** * *
108739415 GGGTATTGCGGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* **
108739442 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
108739469 GGGTA
1 GGGTA
108739474 AAACAGTAAT
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:108739481 original size:27 final size:27
Alignment explanation
Indices: 108739452--108739790 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
108739442 GGGTATTTTA
* *
108739452 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
108739479 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
108739506 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
108739533 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
108739560 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
108739587 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
108739614 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
108739640 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
108739667 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
108739694 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
108739721 GTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
108739748 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
108739775 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
108739791 GGAGTACTTT
Statistics
Matches: 274, Mismatches: 33, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
26 27 0.10
27 243 0.89
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:108742874 original size:43 final size:43
Alignment explanation
Indices: 108742754--108742911 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
108742744 AGCTCGTACA
* *
108742754 ATGCCAACGTCCCAGACGTGGTCTTACA-TGT-AATCAAATATCG
1 ATGCCAACATCCCAGACGTGATCTTACACT-TAAATCAAATAT-G
* ** * *
108742797 ATGCC-ACTTTCCCAGACAAGATCTTACAC-GAAATCAAATATT
1 ATGCCAAC-ATCCCAGACGTGATCTTACACTTAAATCAAATATG
* * *
108742839 ATTCCAACATCCCAGACGTGGTCTTACACTTAAATCATAAGT-CG
1 ATGCCAACATCCCAGACGTGATCTTACACTTAAATCA-AA-TATG
*
108742883 ATGCCAACATCCCAGACGTGATCCTACAC
1 ATGCCAACATCCCAGACGTGATCTTACAC
108742912 AATAACACAT
Statistics
Matches: 91, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 23 0.25
43 39 0.43
44 28 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGATCTTACACTTAAATCAAATATG
Found at i:108746514 original size:45 final size:44
Alignment explanation
Indices: 108746401--108746565 Score: 267
Period size: 45 Copynumber: 3.7 Consensus size: 44
108746391 CTATTCAAGC
*
108746401 CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTCGGG
1 CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGG
*
108746445 CTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATACTATTCGGG
1 CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGG
* * *
108746489 CCTTTGAGCCTAGTAGGCTACAATGCCGGAGAGATACTATTCGGG
1 -CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGG
108746534 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 CTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
108746566 AAGGATATCG
Statistics
Matches: 110, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
44 46 0.42
45 64 0.58
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (44 bp):
CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGG
Found at i:108746577 original size:89 final size:89
Alignment explanation
Indices: 108746390--108746591 Score: 275
Period size: 89 Copynumber: 2.3 Consensus size: 89
108746380 ATCGTACGAA
** * *
108746390 ACTATTCAAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTCGGGCTTTGAGCCT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGAGAGACACTATTCGGGCTTTGAGCCT
* *
108746455 AGCAGGCTATAATGCCAGTGAGAT
66 AGCAGGCTATAATGCCAGTGAAAG
* *
108746479 ACTATTCGGGCCTTTGAGCCTAGTAGGCTACAATGCCGGAGAGATACTATTCGGGCTTTCGAGCC
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGAGAGACACTATTCGGGCTTT-GAGCC
*
108746544 TAGCAGGCTATAATGCCGGTGAAAGG
65 TAGCAGGCTATAATGCCAGTGAAA-G
*
108746570 A-TA-TCGGGCC-TCGAGCCTAGCA
1 ACTATTCGGGCCTTTGAGCCTAGCA
108746592 AGCGAAATGC
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
88 10 0.10
89 60 0.60
90 29 0.29
91 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (89 bp):
ACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGAGAGACACTATTCGGGCTTTGAGCCT
AGCAGGCTATAATGCCAGTGAAAG
Found at i:108755338 original size:40 final size:39
Alignment explanation
Indices: 108755253--108755338 Score: 91
Period size: 40 Copynumber: 2.2 Consensus size: 39
108755243 TAATGACTTA
** *
108755253 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGTT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * ** *
108755292 TTGGCTAAAAGTGGCACTTGGTGTGCAATTTTAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
108755332 TCGGCTA
1 TCGGCTA
108755339 TATAGATATA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
39 9 0.24
40 28 0.76
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:108755406 original size:28 final size:28
Alignment explanation
Indices: 108755349--108755416 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 28
108755339 TATAGATATA
* * *
108755349 AATGGCACTTAGTGTGCAAAGTATCGAG
1 AATGACACTTAGTGTGCAAAGCATCCAG
*
108755377 AATGACACTTAGTGTGTGAAA-CATCCAG
1 AATGACACTTAGTGTG-CAAAGCATCCAG
108755405 AAT-AGCACTTAG
1 AATGA-CACTTAG
108755417 CGCGTGAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 1 0.03
28 30 0.88
29 3 0.09
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (28 bp):
AATGACACTTAGTGTGCAAAGCATCCAG
Found at i:108758034 original size:27 final size:26
Alignment explanation
Indices: 108757986--108758036 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
108757976 ATGTTTAAAA
*
108757986 ACTTTTTATTTATTATTTTTATTTTC
1 ACTTTTTATTTATTATTCTTATTTTC
108758012 ACTTTTATATTTATT-TATCTTATTT
1 ACTTTT-TATTTATTAT-TCTTATTT
108758037 AAGTACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.71
Consensus pattern (26 bp):
ACTTTTTATTTATTATTCTTATTTTC
Found at i:108758087 original size:21 final size:21
Alignment explanation
Indices: 108758045--108758097 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
108758035 TTAAGTACTT
*
108758045 TTATTTTATTTTCCTTTATTA
1 TTATTTTATTTTACTTTATTA
*
108758066 TTATTTTAATTTTAGTTT-TTA
1 TTATTTT-ATTTTACTTTATTA
*
108758087 TAAATTTTATT
1 T-TATTTTATT
108758098 GAATAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.70
Consensus pattern (21 bp):
TTATTTTATTTTACTTTATTA
Found at i:108759594 original size:42 final size:43
Alignment explanation
Indices: 108759495--108759643 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 43
108759485 AATGCCGACA
* * *
108759495 TCCTAGACGTGGTCTTACATGTAATTCAATATCGACGCCTCTG
1 TCCTAGACATGGTCTTACATGTAAATCAATATCGACGCCTATG
* * *
108759538 TCCCAGACAGGGTCTTACATG-AAATCAGATAT-GATG-CTGATG
1 TCCTAGACATGGTCTTACATGTAAATCA-ATATCGACGCCT-ATG
* * *
108759580 TCCTAGACATGGTCTTATACT-TAAATCTCA-ATCGAGGCCTATG
1 TCCTAGACATGGTCTTACA-TGTAAATC-AATATCGACGCCTATG
**
108759623 TCCTAGACACAGTCTTACATG
1 TCCTAGACATGGTCTTACATG
108759644 ATGTCTCAGA
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
41 2 0.02
42 29 0.35
43 51 0.61
44 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
TCCTAGACATGGTCTTACATGTAAATCAATATCGACGCCTATG
Found at i:108773622 original size:18 final size:18
Alignment explanation
Indices: 108773599--108773671 Score: 110
Period size: 18 Copynumber: 4.1 Consensus size: 18
108773589 CTTGGCCCAT
*
108773599 TGCAGTAATAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
108773617 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAAACAG
*
108773635 TGTAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
108773653 TGCAGTAACAGTAAGCAG
1 TGCAGTAACAGTAAACAG
108773671 T
1 T
108773672 ATGCAAGTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:108773649 original size:36 final size:36
Alignment explanation
Indices: 108773602--108773671 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
108773592 GGCCCATTGC
* *
108773602 AGTAATAGTAAACAGTGCAGTAACAGTAATCAGTGT
1 AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGTGT
108773638 AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGT
1 AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGT
108773672 ATGCAAGTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (36 bp):
AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGTGT
Found at i:108774053 original size:27 final size:27
Alignment explanation
Indices: 108774021--108774207 Score: 170
Period size: 27 Copynumber: 7.0 Consensus size: 27
108774011 ATCATCCTAC
* *
108774021 CACATAAGGGTAAACTAGTCATTTTAT
1 CACATAAGGGAAAACTAGTCATTTTAA
* * *
108774048 CTCATAAGGGAAAGAC-CGTCATTTTAC
1 CACATAAGGGAAA-ACTAGTCATTTTAA
* *
108774075 CATATAAGGGCAAAACT-GTCAATTTAA
1 CACATAAGGG-AAAACTAGTCATTTTAA
* *
108774102 CACATAAGGGCAAAAC-AATCATTTT-G
1 CACATAAGGG-AAAACTAGTCATTTTAA
* *
108774128 CACATAAGGGCAAAACCA-TCATTTTAT
1 CACATAAGGG-AAAACTAGTCATTTTAA
*
108774155 CACATAAGGGTAAAA-TTGTCATTTTAA
1 CACATAAGGG-AAAACTAGTCATTTTAA
*
108774182 CACATAAGGGAAAAATAGTCATTTTA
1 CACATAAGGGAAAACTAGTCATTTTA
108774208 CCTTACAGGG
Statistics
Matches: 134, Mismatches: 18, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
26 27 0.20
27 102 0.76
28 5 0.04
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
CACATAAGGGAAAACTAGTCATTTTAA
Found at i:108774082 original size:54 final size:55
Alignment explanation
Indices: 108773992--108774207 Score: 219
Period size: 54 Copynumber: 4.0 Consensus size: 55
108773982 ATAAGCATAC
* * ** *
108773992 ATCACATAGGGGCAAAACAATCATCCTACCACATAAGGG-TAAACTAGTCATTTT
1 ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACTAGTCATTTT
* * * *
108774046 ATCTCATAAGGG-AAAGACCGTCATTTTACCATATAAGGGCAAAACT-GTCAATTT
1 ATCACATAAGGGCAAA-ACAGTCATTTTACCACATAAGGGCAAAACTAGTCATTTT
* * * *
108774100 AACACATAAGGGCAAAACAATCATTTT-GCACATAAGGGCAAAACCA-TCATTTT
1 ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACTAGTCATTTT
* ** * *
108774153 ATCACATAAGGGTAAAATTGTCATTTTAACACATAAGGG-AAAAATAGTCATTTT
1 ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACTAGTCATTTT
108774207 A
1 A
108774208 CCTTACAGGG
Statistics
Matches: 131, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
53 51 0.39
54 72 0.55
55 8 0.06
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (55 bp):
ATCACATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACTAGTCATTTT
Found at i:108774175 original size:80 final size:80
Alignment explanation
Indices: 108774050--108774206 Score: 217
Period size: 80 Copynumber: 2.0 Consensus size: 80
108774040 CATTTTATCT
* * *
108774050 CATAAGGGAAAGACCGTCATTTTACCATATAAGGGCAAAACTGTCAATTTAACACATAAGGGCAA
1 CATAAGGGAAAGACCATCATTTTACCACATAAGGGCAAAACTGTCAATTTAACACATAAGGGAAA
108774115 AACAATCATTTTGCA
66 AACAATCATTTTGCA
* * * *
108774130 CATAAGGGCAAA-ACCATCATTTTATCACATAAGGGTAAAATTGTCATTTTAACACATAAGGGAA
1 CATAAGGG-AAAGACCATCATTTTACCACATAAGGGCAAAACTGTCAATTTAACACATAAGGGAA
* *
108774194 AAATAGTCATTTT
65 AAACAATCATTTT
108774207 ACCTTACAGG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 64 0.96
81 3 0.04
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (80 bp):
CATAAGGGAAAGACCATCATTTTACCACATAAGGGCAAAACTGTCAATTTAACACATAAGGGAAA
AACAATCATTTTGCA
Found at i:108774228 original size:27 final size:26
Alignment explanation
Indices: 108774198--108774420 Score: 209
Period size: 27 Copynumber: 8.3 Consensus size: 26
108774188 AGGGAAAAAT
* *
108774198 AGTCATTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCCTA-AGGGGTATTTC
*
108774225 AGTCATTTTACCCTATGGAGGTATTTC
1 AGTCATTTTACCCTAAGG-GGTATTTC
* * *
108774252 -GATAATTTTACCTTATAAGGGTATTTC
1 AG-TCATTTTACCCTA-AGGGGTATTTC
* *
108774279 TGTCATTTTACCCTATGGGGGTA-TTC
1 AGTCATTTTACCCTA-AGGGGTATTTC
*
108774305 TGATCATTTTACCCTATAGGGGTATTTC
1 AG-TCATTTTACCCTA-AGGGGTATTTC
108774333 AGTCATTTTACCC-AATGAGGGTATTTC
1 AGTCATTTTACCCTAA-G-GGGTATTTC
*
108774360 AGTCATTTTACCCTATGGGGATATTTC
1 AGTCATTTTACCCTAAGGGG-TATTTC
* *
108774387 AGTTATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTA-AGGGGTATTTC
*
108774414 GGTCATT
1 AGTCATT
108774421 ATTCTGTTCC
Statistics
Matches: 167, Mismatches: 18, Indels: 22
0.81 0.09 0.11
Matches are distributed among these distances:
25 1 0.01
26 13 0.08
27 142 0.85
28 11 0.07
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (26 bp):
AGTCATTTTACCCTAAGGGGTATTTC
Found at i:108774260 original size:54 final size:54
Alignment explanation
Indices: 108774200--108774420 Score: 270
Period size: 54 Copynumber: 4.1 Consensus size: 54
108774190 GGAAAAATAG
* * *
108774200 TCATTTTACCTTACAGGGGTATTACAGTCATTTTACCCTATGGAGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGGAGGTATTTCGA
* * * * *
108774254 TAATTTTACCTTATAAGGGTATTTCTGTCATTTTACCCTATGGGGGTA-TTCTGA
1 TCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGGAGGTATTTC-GA
*
108774308 TCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCAAT-GAGGGTATTTC-A
1 TCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGGA-GGTATTTCGA
* * *
108774361 GTCATTTTACCCTAT-GGGGATATTTCAGTTATTTTACCCTATGGGGGTATTTCGG
1 -TCATTTTACCCTATAGGGG-TATTTCAGTCATTTTACCCTATGGAGGTATTTCGA
108774416 TCATT
1 TCATT
108774421 ATTCTGTTCC
Statistics
Matches: 144, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
53 9 0.06
54 131 0.91
55 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (54 bp):
TCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATGGAGGTATTTCGA
Found at i:108774419 original size:81 final size:80
Alignment explanation
Indices: 108774198--108774420 Score: 277
Period size: 81 Copynumber: 2.8 Consensus size: 80
108774188 AGGGAAAAAT
* * * * * *
108774198 AGTCATTTTACCTTACAGGGGTATTACAGTCATTTTACCCTATGGAGGTATTTCGATAATTTTAC
1 AGTCATTTTACCCTA-TGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAC
**
108774263 CTTATAAGGGTATTTC
65 CCAATAAGGGTATTTC
* * * *
108774279 TGTCATTTTACCCTATGGGGGTA-TTCTGATCATTTTACCCTATAGGGGTATTTCAGTCATTTTA
1 AGTCATTTTACCCTAT-GGGGTATTTCAG-TCATTTTACCCTATGGGGGTATTTCGGTCATTTTA
*
108774343 CCCAATGAGGGTATTTC
64 CCCAATAAGGGTATTTC
*
108774360 AGTCATTTTACCCTATGGGGATATTTCAGTTATTTTACCCTATGGGGGTATTTCGGTCATT
1 AGTCATTTTACCCTATGGGG-TATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATT
108774421 ATTCTGTTCC
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
80 7 0.06
81 109 0.91
82 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (80 bp):
AGTCATTTTACCCTATGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
CAATAAGGGTATTTC
Found at i:108778916 original size:40 final size:40
Alignment explanation
Indices: 108778831--108778981 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
108778821 AATTGAATGA
* * * *
108778831 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
108778871 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
108778912 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
108778951 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
108778982 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:108778995 original size:40 final size:40
Alignment explanation
Indices: 108778868--108778997 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
108778858 ATGCTGGAAA
* * *
108778868 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
108778908 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
108778948 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
108778988 TTATATCCGG
1 TTATATCCGG
108778998 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:108778996 original size:80 final size:80
Alignment explanation
Indices: 108778830--108778997 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
108778820 AAATTGAATG
* *
108778830 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
108778895 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
108778910 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
108778973 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
108778990 ATATCCGG
1 ATATCCGG
108778998 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:108786913 original size:40 final size:40
Alignment explanation
Indices: 108786828--108786978 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
108786818 AATTGAATGA
* * * *
108786828 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
108786868 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
108786909 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
108786948 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
108786979 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:108786992 original size:40 final size:40
Alignment explanation
Indices: 108786865--108786994 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
108786855 ATGCTGGAAA
* * *
108786865 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
108786905 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
108786945 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
108786985 TTATATCCGG
1 TTATATCCGG
108786995 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:108786993 original size:80 final size:80
Alignment explanation
Indices: 108786827--108786994 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
108786817 AAATTGAATG
* *
108786827 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
108786892 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
108786907 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
108786970 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
108786987 ATATCCGG
1 ATATCCGG
108786995 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:108791494 original size:39 final size:40
Alignment explanation
Indices: 108791436--108791536 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
108791426 AAATTGAATG
* *
108791436 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
108791475 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
108791515 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
108791537 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:108791529 original size:40 final size:40
Alignment explanation
Indices: 108791436--108791586 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
108791426 AAATTGAATG
* * * * *
108791436 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108791475 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108791515 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
108791555 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
108791587 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:108791601 original size:40 final size:38
Alignment explanation
Indices: 108791432--108791603 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
108791422 TGAGAAATTG
* *
108791432 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
108791471 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
108791508 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
108791548 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
108791588 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
108791604 TAAAGTCCGT
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:108799497 original size:40 final size:39
Alignment explanation
Indices: 108799329--108799508 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
108799319 AGAAATTGAA
* *
108799329 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
108799369 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
108799409 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
108799449 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
108799489 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
108799509 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:108803642 original size:39 final size:40
Alignment explanation
Indices: 108803584--108803684 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
108803574 AAATTGAATG
* *
108803584 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
108803623 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
108803663 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
108803685 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:108803677 original size:40 final size:40
Alignment explanation
Indices: 108803584--108803761 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
108803574 AAATTGAATG
* * * * *
108803584 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108803623 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108803663 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
108803703 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
108803743 ATATCCGGGTTAAGTCCCG
1 ATATCCGGGCTAAGACCCG
108803762 TGGCCTTGGT
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 32 0.27
40 83 0.71
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:108811751 original size:40 final size:39
Alignment explanation
Indices: 108811583--108811753 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
108811573 AGAAATTGAA
* *
108811583 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
108811623 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
108811663 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
108811703 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
108811743 TGATATCCGGG
1 TGATATCCGGG
108811754 TTAAAGTCCC
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:108815679 original size:37 final size:37
Alignment explanation
Indices: 108815638--108815716 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
108815628 AACCTTTAGT
* *
108815638 TCGGGGCTGACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGGCTGACCCGGACAAAATCTCCACACGTAGTCA
* * * *
108815675 TCGGGTCTTACTCGGACATAATCTCCACACGTAGTCA
1 TCGGGGCTGACCCGGACAAAATCTCCACACGTAGTCA
108815712 TCGGG
1 TCGGG
108815717 TTTTAAGCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.32, G:0.25, T:0.22
Consensus pattern (37 bp):
TCGGGGCTGACCCGGACAAAATCTCCACACGTAGTCA
Found at i:108815905 original size:47 final size:47
Alignment explanation
Indices: 108815836--108816038 Score: 325
Period size: 47 Copynumber: 4.3 Consensus size: 47
108815826 CCCTTCGGGA
* * * *
108815836 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
108815883 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
108815930 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
108815977 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
108816024 CTTATCACATATATA
1 CTTATCACATATATA
108816039 TATCTCATAC
Statistics
Matches: 146, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:108815914 original size:25 final size:25
Alignment explanation
Indices: 108815886--108815964 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
108815876 ACTCGGCCTT
*
108815886 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
108815911 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
108815933 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
108815958 ATCACAT
1 ATCACAT
108815965 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:108819184 original size:28 final size:28
Alignment explanation
Indices: 108819153--108819252 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
108819143 CTGACTGATT
*
108819153 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
108819181 TCGCACACATAGTGCTTCAACTACTGATC
1 TCGCACACATAGTGC-TCGATTAAAGAAC
* * *
108819210 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
108819238 TTGCACACACAGTGC
1 TCGCACACATAGTGC
108819253 CTCATAATTC
Statistics
Matches: 55, Mismatches: 16, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
28 33 0.60
29 22 0.40
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:108819317 original size:40 final size:41
Alignment explanation
Indices: 108819262--108819448 Score: 251
Period size: 40 Copynumber: 4.7 Consensus size: 41
108819252 CCTCATAATT
** *
108819262 CTAGCACGAATGCTCTTCGAG-GTTTCGCCCGAATATATCA
1 CTAGCACGAATGCTCTTCGAGAACTTAGCCCGAATATATCA
108819302 CTAGCACGAATGCTCTTCG-GAACTTAGCCCGAATATATCA
1 CTAGCACGAATGCTCTTCGAGAACTTAGCCCGAATATATCA
* * **
108819342 CTAGCACGAATGCTCTTCG-GAAGTTAGTCCGGTTATATCA
1 CTAGCACGAATGCTCTTCGAGAACTTAGCCCGAATATATCA
*
108819382 CTAGCACGAATGCTCTTC-AGAACTTAGTCC-AGATATATCA
1 CTAGCACGAATGCTCTTCGAGAACTTAGCCCGA-ATATATCA
108819422 CTAGCACGAATGCTCTTCGA-AACTTAG
1 CTAGCACGAATGCTCTTCGAGAACTTAG
108819449 TCCGGTTCTT
Statistics
Matches: 133, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (41 bp):
CTAGCACGAATGCTCTTCGAGAACTTAGCCCGAATATATCA
Found at i:108819460 original size:20 final size:20
Alignment explanation
Indices: 108819435--108819473 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
108819425 GCACGAATGC
108819435 TCTTCGAAACTTAGTCCGGT
1 TCTTCGAAACTTAGTCCGGT
*
108819455 TCTTCGGAACTTAGTCCGG
1 TCTTCGAAACTTAGTCCGG
108819474 ATATATCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (20 bp):
TCTTCGAAACTTAGTCCGGT
Found at i:108819485 original size:100 final size:100
Alignment explanation
Indices: 108819355--108819553 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 100
108819345 GCACGAATGC
* *
108819355 TCTTCGGAAGTTAGTCCGGTTATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATAT
1 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATAT
108819420 CACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
66 CACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
* * *
108819455 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATAT
1 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATAT
* *
108819520 CACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
66 CACTAGCACGAATGCTCTTCGAAACTTAGTCCGG
108819554 ATATATCACT
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (100 bp):
TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATAT
CACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
Found at i:108819488 original size:60 final size:60
Alignment explanation
Indices: 108819395--108819515 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
108819385 GCACGAATGC
108819395 TCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
1 TCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
* * *
108819455 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
1 TCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
108819515 T
1 T
108819516 ATATCACTAG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (60 bp):
TCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGT
Found at i:108819510 original size:40 final size:40
Alignment explanation
Indices: 108819455--108819643 Score: 351
Period size: 40 Copynumber: 4.7 Consensus size: 40
108819445 TTAGTCCGGT
108819455 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
* *
108819495 TCTTCGGAACTTAGTCCGGTTATATCACTAGCATGAATGC
1 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
108819535 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
*
108819575 TCTTCGGAACTTAGTCCGGTTATATCACTAGCACGAATGC
1 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
108819615 TCTTCGGAACTTAGTCCGGATATATCACT
1 TCTTCGGAACTTAGTCCGGATATATCACT
108819644 CTCAATTCTC
Statistics
Matches: 143, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (40 bp):
TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGC
Found at i:108819567 original size:140 final size:140
Alignment explanation
Indices: 108819315--108819595 Score: 499
Period size: 140 Copynumber: 2.0 Consensus size: 140
108819305 GCACGAATGC
*
108819315 TCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGAAGTTAGTCCGGTTATAT
1 TCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATAT
108819380 CACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAAC
66 CACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAAC
108819445 TTAGTCCGGT
131 TTAGTCCGGT
* *
108819455 TCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATAT
1 TCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATAT
* * * *
108819520 CACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
66 CACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAAC
108819585 TTAGTCCGGT
131 TTAGTCCGGT
108819595 T
1 T
108819596 ATATCACTAG
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 134 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (140 bp):
TCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATAT
CACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACTAGCACGAATGCTCTTCGAAAC
TTAGTCCGGT
Found at i:108819601 original size:180 final size:180
Alignment explanation
Indices: 108819294--108819633 Score: 590
Period size: 180 Copynumber: 1.9 Consensus size: 180
108819284 TTTCGCCCGA
108819294 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTT
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTT
* *
108819359 CGGAAGTTAGTCCGGTTATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACT
66 CGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACT
108819424 AGCACGAATGCTCTTCGAAACTTAGTCCGGTTCTTCGGAACTTAGTCCGG
131 AGCACGAATGCTCTTCGAAACTTAGTCCGGTTCTTCGGAACTTAGTCCGG
* ** *
108819474 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATATCACTAGCATGAATGCTCTT
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTT
* * *
108819539 CGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATATCACT
66 CGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACT
*
108819604 AGCACGAATGCTCTTCGGAACTTAGTCCGG
131 AGCACGAATGCTCTTCGAAACTTAGTCCGG
108819634 ATATATCACT
Statistics
Matches: 150, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
180 150 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (180 bp):
ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGAATATATCACTAGCACGAATGCTCTT
CGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCAGATATATCACT
AGCACGAATGCTCTTCGAAACTTAGTCCGGTTCTTCGGAACTTAGTCCGG
Found at i:108821604 original size:37 final size:37
Alignment explanation
Indices: 108821563--108821639 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
108821553 TAGTTCGGGG
* *
108821563 CTTACCCGGACAAAATCTCCACCCGTGGTCATCAGGT
1 CTTACCCGGACAAAATCTCCACACGTAGTCATCAGGT
* *
108821600 CTTACCCGGACATAATCTCCACACGTAGTCATCGGGT
1 CTTACCCGGACAAAATCTCCACACGTAGTCATCAGGT
108821637 CTT
1 CTT
108821640 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (37 bp):
CTTACCCGGACAAAATCTCCACACGTAGTCATCAGGT
Found at i:108821826 original size:47 final size:47
Alignment explanation
Indices: 108821757--108822100 Score: 553
Period size: 47 Copynumber: 7.3 Consensus size: 47
108821747 CCCTTCGGGA
* * * * * *
108821757 CTTATCACATTTATACACTTTCATATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
108821804 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
108821851 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108821898 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108821945 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108821992 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
108822039 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108822086 CTTATCACATATATA
1 CTTATCACATATATA
108822101 TATCTCATAC
Statistics
Matches: 278, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 278 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:108821835 original size:25 final size:25
Alignment explanation
Indices: 108821807--108821885 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
108821797 ACTCGGCCTT
*
108821807 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * *
108821832 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCACTTTC-ACATTC
108821854 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
108821879 ATCACAT
1 ATCACAT
108821886 GGGCCATTAG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
22 11 0.26
23 6 0.14
24 7 0.17
25 18 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:108825249 original size:28 final size:28
Alignment explanation
Indices: 108825218--108825317 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
108825208 CTGACTGATT
*
108825218 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
108825246 TCGCACACATAGTGCTTCAACTACTGATC
1 TCGCACACATAGTGC-TCGATTAAAGAAC
* * *
108825275 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
108825303 TTGCACACACAGTGC
1 TCGCACACATAGTGC
108825318 CTCATAATTC
Statistics
Matches: 55, Mismatches: 16, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
28 33 0.60
29 22 0.40
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:108825629 original size:40 final size:40
Alignment explanation
Indices: 108825327--108825832 Score: 482
Period size: 40 Copynumber: 12.1 Consensus size: 40
108825317 CCTCATAATT
** * * *
108825327 CTAGCACGAATGCTCTTC-GAGGTTTCGCCCGAATATATCA
1 CTAGCACGAATGCTCTTCGGA-ACTTAGTCCGGATATATCA
*
108825367 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
* *
108825407 CTAGCACGAATGCTCTTCGGAAGTTAGTCCGGTTATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
* *
108825447 CTAGCACGAATGCTCTTTGGAACTTATTCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
* *
108825487 CTAGCACGAATGCTCTTCGAAACTTAGTCCGGTTATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
*
108825527 CTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
*
108825567 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
* * * * *
108825607 CTAGCACGAATGCTCTTTGGAACTTAGTCATGAATGCTCTTCGGAA
1 CTAGCACGAATGCTCTTCGGAACTTAGTC-CGGAT-AT-ATC---A
* * * *
108825653 CTTAGTC-CGGATATATCACTAGCACGAA--T-GCTCTTCGGAACTTAGTTCGGTTATATCA
1 C-TAG-CAC-GA-AT-GCTCT-TC-GGAACTTAG-TC--CGGA------------TATATCA
*
108825711 CTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
*
108825751 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGTTATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
*
108825791 CTAGCACGAATGCTCTTCGGAACTTAGTCTGGATATATCA
1 CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
108825831 CT
1 CT
108825833 CTCAATTCTC
Statistics
Matches: 389, Mismatches: 45, Indels: 64
0.78 0.09 0.13
Matches are distributed among these distances:
40 329 0.85
41 5 0.01
42 1 0.00
43 2 0.01
46 2 0.01
47 4 0.01
48 3 0.01
49 3 0.01
50 6 0.02
51 2 0.01
52 10 0.03
53 1 0.00
54 6 0.02
55 3 0.01
56 3 0.01
57 3 0.01
58 2 0.01
61 2 0.01
62 1 0.00
63 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (40 bp):
CTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCA
Found at i:108825646 original size:24 final size:24
Alignment explanation
Indices: 108825614--108825659 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
108825604 TCACTAGCAC
*
108825614 GAATGCTCTTTGGAACTTAGTCAT
1 GAATGCTCTTCGGAACTTAGTCAT
108825638 GAATGCTCTTCGGAACTTAGTC
1 GAATGCTCTTCGGAACTTAGTC
108825660 CGGATATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (24 bp):
GAATGCTCTTCGGAACTTAGTCAT
Found at i:108825675 original size:64 final size:64
Alignment explanation
Indices: 108825574--108825698 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
108825564 TCACTAGCAC
*
108825574 GAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAACTTAGTCAT
1 GAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCAT
*
108825638 GAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 GAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGT
108825699 TCGGTTATAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (64 bp):
GAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCAT
Found at i:108825711 original size:104 final size:104
Alignment explanation
Indices: 108825531--108825739 Score: 373
Period size: 104 Copynumber: 2.0 Consensus size: 104
108825521 ATATCACTAG
108825531 CATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
1 CATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
*
108825596 CGGATATATCACTAGCACGAATGCTCTTTGGAACTTAGT
66 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGT
**
108825635 CATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTT
1 CATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
* *
108825700 CGGTTATATCACTAGCATGAATGCTCTTCGGAACTTAGT
66 CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGT
108825739 C
1 C
108825740 CGGATATATC
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (104 bp):
CATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCC
CGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGT
Found at i:108825754 original size:144 final size:144
Alignment explanation
Indices: 108825494--108825779 Score: 500
Period size: 144 Copynumber: 2.0 Consensus size: 144
108825484 TCACTAGCAC
* *
108825494 GAATGCTCTTCGAAACTTAGTCCGGTTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
1 GAATGCTCTTCGAAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
108825559 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTT
66 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTT
*
108825624 TGGAACTTAGTCAT
131 CGGAACTTAGTCAT
* *
108825638 GAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTTCGG
1 GAATGCTCTTCGAAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* * *
108825703 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTT
66 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTT
108825768 CGGAACTTAGTC
131 CGGAACTTAGTC
108825780 CGGTTATATC
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
144 134 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (144 bp):
GAATGCTCTTCGAAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTT
CGGAACTTAGTCAT
Found at i:108825763 original size:184 final size:184
Alignment explanation
Indices: 108825454--108825819 Score: 669
Period size: 184 Copynumber: 2.0 Consensus size: 184
108825444 TCACTAGCAC
* *
108825454 GAATGCTCTTTGGAACTTATTCCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGG
1 GAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGG
108825519 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTT
66 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTT
*
108825584 CGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAACTTAGTCAT
131 CGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCAT
* *
108825638 GAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTTCGG
1 GAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGG
108825703 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTT
66 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTT
* *
108825768 CGGAACTTAGTCCGGTTATATCACTAGCACGAATGCTCTTCGGAACTTAGTC
131 CGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTC
108825820 TGGATATATC
Statistics
Matches: 175, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
184 175 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (184 bp):
GAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGG
TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATGCTCTT
CGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCAT
Found at i:108827782 original size:37 final size:37
Alignment explanation
Indices: 108827741--108827817 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
108827731 TAGTTCGGGG
* * *
108827741 CTTACCCGGACAAAATCTCCACCCGTGGTCATCAGGT
1 CTTACCCAGACAAAATCTCCACACGTAGTCATCAGGT
* *
108827778 CTTACCCAGACATAATCTCCACACGTAGTCATCGGGT
1 CTTACCCAGACAAAATCTCCACACGTAGTCATCAGGT
108827815 CTT
1 CTT
108827818 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (37 bp):
CTTACCCAGACAAAATCTCCACACGTAGTCATCAGGT
Found at i:108828004 original size:47 final size:47
Alignment explanation
Indices: 108827935--108828472 Score: 844
Period size: 47 Copynumber: 11.4 Consensus size: 47
108827925 CCCTTCGGGA
* * * * * *
108827935 CTTATCACATTTATACACTTTCACATCCATTACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
108827982 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
108828029 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108828076 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
108828123 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
108828170 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108828217 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108828264 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
108828311 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
108828358 CTTGTCACTTATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108828405 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
108828456 CGTATCACATATATACA
1 CTTATCACATATATACA
108828473 TCTCATACAT
Statistics
Matches: 460, Mismatches: 25, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 413 0.90
48 1 0.00
51 45 0.10
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:108828013 original size:25 final size:25
Alignment explanation
Indices: 108827985--108828063 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
108827975 ACTCGGCCTT
*
108827985 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
108828010 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
108828032 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
108828057 ATCACAT
1 ATCACAT
108828064 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:108833913 original size:40 final size:40
Alignment explanation
Indices: 108833858--108834030 Score: 219
Period size: 40 Copynumber: 4.4 Consensus size: 40
108833848 TGATAACCGG
* *
108833858 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-TCCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGA
108833898 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
* *
108833938 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
* * *
108833978 GCTATGTCCCGAAGGCA-TTGAGTGAG-TAGCTATATCC-A
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGA
* *
108834016 GCTAAATCTCGAAGG
1 GCTAAGTCCCGAAGG
108834031 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 14 0.12
39 15 0.13
40 90 0.76
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
Found at i:108838721 original size:68 final size:68
Alignment explanation
Indices: 108838643--108838769 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
108838633 GCTACATTTA
* * *
108838643 TCTCGTAGCTCTCTTGT-CTACATGGTGTACA-CATAGTATCACCCATGTGACCTAGCTACCTCA
1 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATCACA-TATCACACATGTGACCTAGCTACCTCA
108838706 TAATG
64 TAATG
* *
108838711 TCTCGTAGCTCTCTTGTACACATGGTATACATCCCATATTACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGTACACATGGTATACATCACATATCACACATGTGACCTAGCTAC
108838770 ATACCATCTG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
68 49 0.94
69 3 0.06
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.32
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTACACATGGTATACATCACATATCACACATGTGACCTAGCTACCTCATA
ATG
Found at i:108840998 original size:129 final size:129
Alignment explanation
Indices: 108840768--108841030 Score: 508
Period size: 129 Copynumber: 2.0 Consensus size: 129
108840758 AAATAATATC
108840768 ATAACATCAAACATAAGTTCCAAATGCATAAATTCATCATTTTATCACCTACTAAATCAACCATT
1 ATAACATCAAACATAAGTTCCAAATGCATAAATTCATCATTTTATCACCTACTAAATCAACCATT
* *
108840833 TTTCACAAAGCCCTTTTGTACACATCAAAATATAGCATATAGACACTATTGCATCACATAGATT
66 TTTCACAAAGCCCTTTTATACACATCAAAATATAGCATATAGACAATATTGCATCACATAGATT
108840897 ATAACATCAAACATAAGTTCCAAATGCATAAATTCATCATTTTATCACCTACTAAATCAACCATT
1 ATAACATCAAACATAAGTTCCAAATGCATAAATTCATCATTTTATCACCTACTAAATCAACCATT
108840962 TTTCACAAAGCCCTTTTATACACATCAAAATATAGCATATAGACAATATTGCATCACATAGATT
66 TTTCACAAAGCCCTTTTATACACATCAAAATATAGCATATAGACAATATTGCATCACATAGATT
108841026 ATAAC
1 ATAAC
108841031 CATACTTCAT
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 132 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (129 bp):
ATAACATCAAACATAAGTTCCAAATGCATAAATTCATCATTTTATCACCTACTAAATCAACCATT
TTTCACAAAGCCCTTTTATACACATCAAAATATAGCATATAGACAATATTGCATCACATAGATT
Found at i:108841671 original size:40 final size:40
Alignment explanation
Indices: 108841623--108841712 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
108841613 TCGATATTGT
*
108841623 ACACTTAGTGCCTA-GTATAGCCAAAGCTATTCCAATTCGC
1 ACACTTAGTGCCTATGTATAACCAAAGCTATTCCAA-TCGC
* * **
108841663 ACACTTAGTG-CTATTTATAATCAAAGCTATTTGAATCGC
1 ACACTTAGTGCCTATGTATAACCAAAGCTATTCCAATCGC
*
108841702 ACATTTAGTGC
1 ACACTTAGTGC
108841713 TGAACATAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
39 16 0.38
40 26 0.62
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.32
Consensus pattern (40 bp):
ACACTTAGTGCCTATGTATAACCAAAGCTATTCCAATCGC
Found at i:108846480 original size:42 final size:42
Alignment explanation
Indices: 108846401--108846489 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
108846391 GGATTACTAG
* *
108846401 GATATTAGATTCATGTAAGACCATGTCTGAGACATTGGCATT
1 GATATGAGATTCATGTAAGACCATGTCTGAGACATTGGCATC
* * **
108846443 GATATGAGATTCGTGTAAGACCATAG-CTGGGTTATTGGCATC
1 GATATGAGATTCATGTAAGACCAT-GTCTGAGACATTGGCATC
108846485 GATAT
1 GATAT
108846490 ACTATAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
GATATGAGATTCATGTAAGACCATGTCTGAGACATTGGCATC
Found at i:108849190 original size:46 final size:47
Alignment explanation
Indices: 108849015--108849180 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 47
108849005 TGTAACCCGC
* * *
108849015 CCATAAGTGAATTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGACATTTGCAT
* * * *
108849061 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG--GAC-ATTTGCAT
* * *
108849111 CTC-T---CGAACTCAGACTCAACTCAACGAGTTC-GGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGACATTTGCAT
108849154 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
108849181 TGAGTTCGGA
Statistics
Matches: 96, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 2 0.02
46 53 0.55
47 23 0.24
48 1 0.01
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGACATTTGCAT
Found at i:108853468 original size:40 final size:40
Alignment explanation
Indices: 108853424--108853506 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
108853414 TCATTGTAAA
* *
108853424 CAAAATGTCCATCATTTTATTGTCCATATAGGTTTTAAGT
1 CAAAACGTCCATCATTTTATTGTCCATAGAGGTTTTAAGT
* *
108853464 CAAAACGTGCATCATTTTATTGTCTATAGAGGTTTTAAGT
1 CAAAACGTCCATCATTTTATTGTCCATAGAGGTTTTAAGT
108853504 CAA
1 CAA
108853507 TCATTCAAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (40 bp):
CAAAACGTCCATCATTTTATTGTCCATAGAGGTTTTAAGT
Found at i:108856165 original size:11 final size:10
Alignment explanation
Indices: 108856133--108856186 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
108856123 CATGAGATTT
108856133 TGATAT-ACA
1 TGATATGACA
*
108856142 TGATTTGACA
1 TGATATGACA
108856152 TGATATGCACA
1 TGATATG-ACA
*
108856163 TGATATG-TA
1 TGATATGACA
108856172 TGATATGTACA
1 TGATATG-ACA
108856183 TGAT
1 TGAT
108856187 GTATTCATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:108856261 original size:25 final size:25
Alignment explanation
Indices: 108856233--108856316 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
108856223 GAGGAAGTGC
*
108856233 AAAAGGTCTATGCCCCAGTTTACCGA
1 AAAAGG-CTATGCCCCAGTTTACCAA
* *
108856259 AAAAGGCTTTGCCCCAGTTTATCAA
1 AAAAGGCTATGCCCCAGTTTACCAA
* * **
108856284 AAAGGGCT-TCGCCCTAG-TTATTAA
1 AAAAGGCTAT-GCCCCAGTTTACCAA
108856308 AAAAGGCTA
1 AAAAGGCTA
108856317 GGCCTCCAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
24 14 0.29
25 29 0.59
26 6 0.12
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAAGGCTATGCCCCAGTTTACCAA
Found at i:108856304 original size:24 final size:24
Alignment explanation
Indices: 108856244--108856315 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
108856234 AAAGGTCTAT
* *
108856244 GCCCCAGTTTACCGAAAAAGGCTTT
1 GCCCCAGTTTATC-AAAAAGGCTTC
108856269 GCCCCAGTTTATCAAAAAGGGCTTC
1 GCCCCAGTTTATCAAAAA-GGCTTC
* *
108856294 GCCCTAG-TTATTAAAAAAGGCT
1 GCCCCAGTTTA-TCAAAAAGGCT
108856316 AGGCCTCCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 12 0.29
25 29 0.71
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
GCCCCAGTTTATCAAAAAGGCTTC
Found at i:108858320 original size:11 final size:11
Alignment explanation
Indices: 108858304--108858334 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
108858294 TCTTAGGCCT
108858304 AAATTTTCGAA
1 AAATTTTCGAA
108858315 AAATTTTCGAA
1 AAATTTTCGAA
108858326 AAATTTTCG
1 AAATTTTCG
108858335 GACCCGATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (11 bp):
AAATTTTCGAA
Found at i:108859130 original size:31 final size:31
Alignment explanation
Indices: 108859089--108859152 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
108859079 CCTTTTCATA
*
108859089 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
108859120 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
108859151 TT
1 TT
108859153 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:108859396 original size:24 final size:24
Alignment explanation
Indices: 108859344--108859509 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
108859334 GCTTTATCAT
*
108859344 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
108859369 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
108859393 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
108859416 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
108859440 ATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
108859464 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
108859487 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108859510 TCACTTCCTC
Statistics
Matches: 128, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
23 43 0.34
24 73 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:108859420 original size:47 final size:48
Alignment explanation
Indices: 108859343--108859509 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
108859333 TGCTTTATCA
* *
108859343 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
108859392 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
108859439 GATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
108859486 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
108859510 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:108859444 original size:71 final size:71
Alignment explanation
Indices: 108859344--108859509 Score: 271
Period size: 71 Copynumber: 2.3 Consensus size: 71
108859334 GCTTTATCAT
*
108859344 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
108859408 GCCCTTTA
64 GCCCTTTA
* * *
108859416 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGC
108859481 CCTTTA
66 CCTTTA
108859487 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108859510 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
71 77 0.87
72 12 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTA
Found at i:108859582 original size:9 final size:9
Alignment explanation
Indices: 108859568--108859644 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
108859558 ATCTCGTGTG
108859568 CATATCATA
1 CATATCATA
*
108859577 CATATCATGTG
1 CATATCA--TA
108859588 CATATCATA
1 CATATCATA
* *
108859597 CATGTCATGTG
1 CATATCA--TA
108859608 CATATCATA
1 CATATCATA
*
108859617 CATATCATGTG
1 CATATCA--TA
108859628 CATATCATA
1 CATATCATA
108859637 CATATCAT
1 CATATCAT
108859645 GCGTTAAGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:108859587 original size:20 final size:20
Alignment explanation
Indices: 108859564--108859645 Score: 155
Period size: 20 Copynumber: 4.1 Consensus size: 20
108859554 GAACATCTCG
108859564 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
108859584 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
108859604 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
108859624 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
108859644 TG
1 TG
108859646 CGTTAAGTTC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:108859593 original size:11 final size:11
Alignment explanation
Indices: 108859564--108859635 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
108859554 GAACATCTCG
108859564 TGTGCATATCA
1 TGTGCATATCA
*
108859575 --TACATATCA
1 TGTGCATATCA
108859584 TGTGCATATCA
1 TGTGCATATCA
* *
108859595 --TACATGTCA
1 TGTGCATATCA
108859604 TGTGCATATCA
1 TGTGCATATCA
*
108859615 --TACATATCA
1 TGTGCATATCA
108859624 TGTGCATATCA
1 TGTGCATATCA
108859635 T
1 T
108859636 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:108859694 original size:25 final size:25
Alignment explanation
Indices: 108859666--108859713 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
108859656 ATATATAAAC
* * *
108859666 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
108859691 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
108859714 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:108860969 original size:27 final size:27
Alignment explanation
Indices: 108860949--108861394 Score: 539
Period size: 27 Copynumber: 16.6 Consensus size: 27
108860939 AGGGTATTTT
*
108860949 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
108860976 AGTAATTTTATAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
108861003 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
108861030 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
108861057 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
108861084 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
108861111 -GATAATTATGTAAATTG-GGGTAAAA-
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
108861136 TGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
108861163 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
108861190 GGTAATTCTGTAAATCGA-GGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
108861216 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
108861243 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
108861270 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
108861297 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
108861324 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
108861351 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
108861378 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
108861395 GGAGTACTTT
Statistics
Matches: 372, Mismatches: 36, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
25 12 0.03
26 44 0.12
27 313 0.84
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:108863478 original size:11 final size:11
Alignment explanation
Indices: 108863462--108863492 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
108863452 TCTTAGGCCT
108863462 AAATTTTCGAA
1 AAATTTTCGAA
108863473 AAATTTTCGAA
1 AAATTTTCGAA
108863484 AAATTTTCG
1 AAATTTTCG
108863493 GACCCGATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (11 bp):
AAATTTTCGAA
Found at i:108864287 original size:31 final size:31
Alignment explanation
Indices: 108864246--108864309 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
108864236 CCTTTTCATA
*
108864246 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
108864277 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
108864308 TT
1 TT
108864310 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:108864553 original size:24 final size:24
Alignment explanation
Indices: 108864501--108864666 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
108864491 GCTTTATCAT
*
108864501 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
108864526 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
108864550 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
108864573 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
108864597 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
108864621 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
108864644 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108864667 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:108864577 original size:47 final size:48
Alignment explanation
Indices: 108864500--108864666 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
108864490 TGCTTTATCA
* *
108864500 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
108864549 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
108864596 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
108864643 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
108864667 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:108864601 original size:71 final size:71
Alignment explanation
Indices: 108864501--108864666 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
108864491 GCTTTATCAT
* *
108864501 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
108864565 GCCCTTTA
64 GCCCTTTA
* * *
108864573 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
108864638 CCTTTA
66 CCTTTA
108864644 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
108864667 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:108864738 original size:9 final size:9
Alignment explanation
Indices: 108864724--108864800 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
108864714 ATCTCGTGTG
108864724 CATATCATA
1 CATATCATA
*
108864733 CATATCATGTG
1 CATATCA--TA
108864744 CATATCATA
1 CATATCATA
* *
108864753 CATGTCATGTG
1 CATATCA--TA
108864764 CATATCATA
1 CATATCATA
*
108864773 CATATCATGTG
1 CATATCA--TA
108864784 CATATCATA
1 CATATCATA
108864793 CATATCAT
1 CATATCAT
108864801 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Done.