Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 357 of 770
Found at i:109674267 original size:46 final size:46
Alignment explanation
Indices: 109674217--109674392 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
109674207 TGGTTGAGCA
*
109674217 TCCGAACTCGTTGAGTTGAGT-TCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCAAACG
* * * * * *
109674263 TCCGAACTCGTTGAGTTTAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--A--CG
* * *
109674310 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
* * *
109674356 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
109674393 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
Found at i:109674383 original size:93 final size:93
Alignment explanation
Indices: 109674214--109674385 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
109674204 GGATGGTTGA
* ***
109674214 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
*
109674279 TTAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
109674307 GCATCCGAACTCGTTGAGTTGAG-TCTGAGTTCACTCATGGATGCGAACACCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAG
*
109674371 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
109674386 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:109677280 original size:2 final size:2
Alignment explanation
Indices: 109677275--109677308 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
109677265 TCAAACACCT
*
109677275 CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
109677309 TATATATCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:109678172 original size:41 final size:43
Alignment explanation
Indices: 109678127--109678229 Score: 99
Period size: 43 Copynumber: 2.4 Consensus size: 43
109678117 CCGCTACCCT
109678127 AAACAGGGTCTTACATGAATCG-A-ATA-CGATGTCAATGTCCC
1 AAACAGGGTCTTACATGAA-CGAATATATCGATGTCAATGTCCC
** * *
109678168 AAACATTGTCTTACGT-AACGACATATATTGATGTCAATGTCCC
1 AAACAGGGTCTTACATGAACGA-ATATATCGATGTCAATGTCCC
*
109678211 AGAC-GTGGTCTTACATGAA
1 AAACAG-GGTCTTACATGAA
109678230 AACACATATC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
39 2 0.04
40 2 0.04
41 14 0.29
42 3 0.06
43 25 0.52
44 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (43 bp):
AAACAGGGTCTTACATGAACGAATATATCGATGTCAATGTCCC
Found at i:109678812 original size:15 final size:15
Alignment explanation
Indices: 109678789--109678819 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
109678779 TCAAAAATTC
109678789 CAATACAAAACATAT
1 CAATACAAAACATAT
*
109678804 CAATCCAAAACATAT
1 CAATACAAAACATAT
109678819 C
1 C
109678820 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:109682949 original size:6 final size:6
Alignment explanation
Indices: 109682939--109682972 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
109682929 AGAAAATAAT
* *
109682939 AAAATT AAAATG AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
109682973 GATAGGAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:109689821 original size:47 final size:47
Alignment explanation
Indices: 109689761--109689882 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
109689751 GCATTGGCAC
*
109689761 TAAGACAAGGATACCATGTAAGACCATGTATGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTATAGAACATGGCATTTGG
* * *
109689808 TAAGACAATGATACCATGTAAAACCATGTTTAGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTATAGAACATGGCATTTGG
* * * *
109689855 TATGATAAGGATATCATGCAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
109689883 CCAAGGCATG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTATAGAACATGGCATTTGG
Found at i:109689925 original size:54 final size:56
Alignment explanation
Indices: 109689861--109690007 Score: 201
Period size: 54 Copynumber: 2.7 Consensus size: 56
109689851 TTGGTATGAT
* *
109689861 AAGGATATCATGCAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATATGGC-
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
* * *
109689915 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
** *
109689971 AAGG-TCCCATGTAAGACCATGCCAAGGCATAGCATTG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
109690008 GTGATGTAAC
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
54 41 0.51
55 36 0.44
56 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (56 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGCA
Found at i:109689990 original size:55 final size:54
Alignment explanation
Indices: 109689869--109690007 Score: 181
Period size: 55 Copynumber: 2.6 Consensus size: 54
109689859 ATAAGGATAT
* * *
109689869 CATGCAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATATGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAC
* * **
109689923 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC-AAGGAAAC
*
109689978 CATGTAAGACCATGCCAAGGCATAGCATTG
1 CATGTAAGACCATGCCAAGGCATGGCATTG
109690008 GTGATGTAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.46
55 36 0.49
56 4 0.05
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAC
Found at i:109694110 original size:46 final size:46
Alignment explanation
Indices: 109694055--109694235 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
109694045 TAGGATGGTT
109694055 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
109694101 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
109694147 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
109694194 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
109694236 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:109694216 original size:93 final size:93
Alignment explanation
Indices: 109694057--109694227 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
109694047 GGATGGTTGA
* *
109694057 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109694122 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
109694150 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109694215 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
109694228 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:109697205 original size:15 final size:15
Alignment explanation
Indices: 109697185--109697253 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
109697175 GTATCTTGGG
109697185 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
109697200 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
109697215 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
109697230 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
109697245 TTTCTTTAT
1 TTTCTTTAT
109697254 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:109697254 original size:30 final size:30
Alignment explanation
Indices: 109697176--109697263 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
109697166 CATAGTATCG
* * * *
109697176 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
109697206 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
109697236 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
109697264 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:109699677 original size:46 final size:46
Alignment explanation
Indices: 109699622--109699802 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
109699612 TAGGATGGTT
109699622 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
109699668 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
109699714 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
109699761 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
109699803 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:109699783 original size:93 final size:93
Alignment explanation
Indices: 109699624--109699794 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
109699614 GGATGGTTGA
* *
109699624 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109699689 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
109699717 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
109699782 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
109699795 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:109701340 original size:26 final size:26
Alignment explanation
Indices: 109701311--109701363 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
109701301 TCAAACATGC
109701311 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
109701337 ATTTCGGTAGTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
109701363 A
1 A
109701364 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:109702494 original size:21 final size:21
Alignment explanation
Indices: 109702456--109702495 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
109702446 CTATGGAGGA
109702456 GAAGAAGAAAAAGAAAAAGTT
1 GAAGAAGAAAAAGAAAAAGTT
*
109702477 GAAG-AGAAAATGAGAAAAG
1 GAAGAAGAAAAAGA-AAAAG
109702496 AAAGAAGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.28, T:0.07
Consensus pattern (21 bp):
GAAGAAGAAAAAGAAAAAGTT
Found at i:109702629 original size:12 final size:12
Alignment explanation
Indices: 109702612--109702706 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
109702602 GCTAACTCCT
*
109702612 GCTCCTTGATCA
1 GCTCCTTAATCA
* *
109702624 GCTCCTAAATCT
1 GCTCCTTAATCA
* *
109702636 TCTCCTTTATCA
1 GCTCCTTAATCA
* *
109702648 GCTCCTAAATCC
1 GCTCCTTAATCA
*
109702660 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
* *
109702672 GCTCCTAAATCC
1 GCTCCTTAATCA
*
109702684 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
109702696 GCTCCTAAATC
1 GCTCCTTAATC
109702707 TTCTCCTGAC
Statistics
Matches: 57, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.11
12 45 0.79
13 6 0.11
ACGTcount: A:0.21, C:0.38, G:0.06, T:0.35
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:109702669 original size:24 final size:24
Alignment explanation
Indices: 109702615--109702712 Score: 160
Period size: 24 Copynumber: 4.0 Consensus size: 24
109702605 AACTCCTGCT
*
109702615 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCCTCTC
*
109702640 CTTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
109702664 CCTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
109702688 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
109702712 C
1 C
109702713 TGACAGCCTC
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.20, C:0.39, G:0.05, T:0.36
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:109710484 original size:24 final size:24
Alignment explanation
Indices: 109710456--109710523 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
109710446 GCTTCTTGAC
109710456 CAGCTCCTAAATCTTCTCCTTTAT
1 CAGCTCCTAAATCTTCTCCTTTAT
* *
109710480 CAGCTCCTAAATCCTCTCCCTTAT
1 CAGCTCCTAAATCTTCTCCTTTAT
*
109710504 CAGCTCTTAAATCTTCTCCT
1 CAGCTCCTAAATCTTCTCCT
109710524 GACAGCCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.37, G:0.04, T:0.38
Consensus pattern (24 bp):
CAGCTCCTAAATCTTCTCCTTTAT
Found at i:109712171 original size:16 final size:18
Alignment explanation
Indices: 109712152--109712187 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
109712142 ATTAAATACT
109712152 ATGTCAA-TTGATT-ATA
1 ATGTCAATTTGATTAATA
109712168 ATGTCAATTTGATTAATA
1 ATGTCAATTTGATTAATA
109712186 AT
1 AT
109712188 TAATTCATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (18 bp):
ATGTCAATTTGATTAATA
Found at i:109720455 original size:29 final size:28
Alignment explanation
Indices: 109720400--109720503 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
109720390 ATGAGCATGA
* * *
109720400 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
109720428 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
109720457 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
109720486 ATATGAATATGATTGGGC
1 ATATAAATGTGATTGGGC
109720504 TTACTATGCC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
28 17 0.26
29 49 0.74
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:109724789 original size:29 final size:29
Alignment explanation
Indices: 109724737--109724836 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 29
109724727 GTGAGCATGA
* *
109724737 ATATGAATGTGA-CTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
109724765 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
109724794 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
109724823 ATATGAATATGATT
1 ATATAAATGTGATT
109724837 GGGATTACTG
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 11 0.17
29 52 0.83
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:109724818 original size:58 final size:57
Alignment explanation
Indices: 109724750--109724860 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
109724740 TGAATGTGAC
* * *
109724750 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGACTAATGGGCCAAATACAGGTGATT
* * *
109724808 TGGGCCTAATGGGCCATATGAATATGATTGGGATTACTGGGCCAAATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGACTAATGGGCCAAATACAGGT
109724861 ATGCAAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGACTAATGGGCCAAATACAGGTGATT
Found at i:109726081 original size:37 final size:37
Alignment explanation
Indices: 109726031--109726101 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
109726021 TGATGCTAGG
109726031 GTTATTATGAACTTTTTGCAGAAACACGTATTCAAAA
1 GTTATTATGAACTTTTTGCAGAAACACGTATTCAAAA
109726068 GTTATTATGAACTTTTTGCAGAAACACGTATTCA
1 GTTATTATGAACTTTTTGCAGAAACACGTATTCA
109726102 CAAGGTTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (37 bp):
GTTATTATGAACTTTTTGCAGAAACACGTATTCAAAA
Found at i:109727580 original size:23 final size:23
Alignment explanation
Indices: 109727549--109727598 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
109727539 GCAGTAGCAT
* *
109727549 TGCCCAGCTAATTGGCTAGCACA
1 TGCCAAGCTAATTGGCCAGCACA
* *
109727572 TGCCAAGCTGATTGGCCAGTACA
1 TGCCAAGCTAATTGGCCAGCACA
109727595 TGCC
1 TGCC
109727599 CAGTAGCCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (23 bp):
TGCCAAGCTAATTGGCCAGCACA
Found at i:109731188 original size:47 final size:47
Alignment explanation
Indices: 109731134--109731634 Score: 867
Period size: 47 Copynumber: 10.7 Consensus size: 47
109731124 GATTTTATGC
* * *
109731134 GATGAATGTGAATGTGTATATATGAGATAAGCCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* * *
109731181 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCTATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
109731228 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
109731275 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
109731322 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCGGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
109731369 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
109731416 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
109731463 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
*
109731510 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
109731557 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
* *
109731604 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
109731635 TCCCGAAGGG
Statistics
Matches: 435, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 435 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGT
Found at i:109733120 original size:40 final size:40
Alignment explanation
Indices: 109733061--109733522 Score: 649
Period size: 40 Copynumber: 11.8 Consensus size: 40
109733051 GAGAATTGAG
* * *
109733061 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
109733101 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
109733141 AGTGATGTCTCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
109733181 AGTGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
109733221 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGC-
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
109733260 --T-A-G--T---GACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
109733291 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
109733331 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTTCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
109733371 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
109733411 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* **
109733451 AGTGATATATCCGTG-CTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCG-GACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
109733491 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
109733523 ATCATGCTGG
Statistics
Matches: 381, Mismatches: 29, Indels: 24
0.88 0.07 0.06
Matches are distributed among these distances:
30 25 0.07
33 2 0.01
34 1 0.00
35 2 0.01
36 1 0.00
37 2 0.01
39 1 0.00
40 346 0.91
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:109733270 original size:30 final size:30
Alignment explanation
Indices: 109733234--109733295 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
109733224 GATGTATCCG
*
109733234 GACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GACTAAGTCCCGAAGAGCATTCGTGCTAGT
109733264 GACTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GACTAAGTCCCGAAGAGCATTCGTGCTAGT
109733294 GA
1 GA
109733296 TGTATCCGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (30 bp):
GACTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:109733307 original size:70 final size:70
Alignment explanation
Indices: 109733194--109733415 Score: 309
Period size: 70 Copynumber: 3.0 Consensus size: 70
109733184 GATGTATCCG
* *
109733194 GACTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTG
1 GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTG
109733259 CTAGT
66 CTAGT
109733264 GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTG
1 GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTG
109733329 CTAGTGATGTAT
66 C---T-A-G--T
* * *
109733341 CCGGACTAAGTCTCGAAGAGCATTCGTTCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTC
1 ---GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC
109733406 GTGCTAGT
63 GTGCTAGT
109733414 GA
1 GA
109733416 TGTATCCGGA
Statistics
Matches: 137, Mismatches: 5, Indels: 20
0.85 0.03 0.12
Matches are distributed among these distances:
70 66 0.48
73 2 0.01
74 1 0.01
75 2 0.01
76 1 0.01
77 2 0.01
80 63 0.46
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (70 bp):
GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTG
CTAGT
Found at i:109733402 original size:190 final size:190
Alignment explanation
Indices: 109733076--109733455 Score: 724
Period size: 190 Copynumber: 2.0 Consensus size: 190
109733066 TATACCCGGG
109733076 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
109733141 AGTGATGTCTCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCA
66 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCA
109733206 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
131 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
109733266 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
109733331 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTTCTAGTGATGTATCCGGACTAAGTCCCG
66 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCA
109733396 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
131 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
109733456 TATATCCGTG
Statistics
Matches: 186, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
190 186 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (190 bp):
CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCA
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
Found at i:109735605 original size:66 final size:68
Alignment explanation
Indices: 109735527--109735713 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
109735517 TAGTACCACT
*
109735527 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
109735589 CACG
65 CACG
109735593 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
109735658 ATCACG
63 ATCACG
109735664 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
109735714 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:109735638 original size:71 final size:71
Alignment explanation
Indices: 109735550--109735713 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
109735540 CGATTTGTCT
109735550 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
109735615 CTTTCA
66 CTTTCA
109735621 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
109735686 CTTTCA
66 CTTTCA
109735692 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
109735714 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:109735751 original size:71 final size:70
Alignment explanation
Indices: 109735550--109735747 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
109735540 CGATTTGTCT
* * * *
109735550 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
109735615 CTTTCA
65 CTTTCA
* * * *
109735621 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
109735686 CTTTCA
65 CTTTCA
* *
109735692 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
109735748 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:109743176 original size:71 final size:71
Alignment explanation
Indices: 109743090--109743253 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
109743080 CGATTTGTCT
109743090 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
109743155 CTTTCA
66 CTTTCA
109743161 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
109743226 CTTTCA
66 CTTTCA
109743232 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
109743254 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:109743291 original size:71 final size:70
Alignment explanation
Indices: 109743090--109743287 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
109743080 CGATTTGTCT
* * * *
109743090 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
109743155 CTTTCA
65 CTTTCA
* * * *
109743161 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
109743226 CTTTCA
65 CTTTCA
* *
109743232 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
109743288 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:109747158 original size:47 final size:47
Alignment explanation
Indices: 109747107--109747582 Score: 812
Period size: 47 Copynumber: 10.2 Consensus size: 47
109747097 GATTTTATGC
* * *
109747107 ATGAATGTGAATGTGTATATATGAGATAAGGTCGAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747154 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
109747201 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747248 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747295 ATGAACGTGAAAGTGTATATATGTGATAAGG-CGAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747341 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747387 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747434 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747481 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
* * *
109747528 ATGAATGTGAAAGTGTATATATGTGATAGGGCCGAATGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
*
109747575 ATGGATGT
1 ATGAATGT
109747583 CAGTACTATA
Statistics
Matches: 408, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 89 0.22
47 319 0.78
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTG
Found at i:109758633 original size:39 final size:40
Alignment explanation
Indices: 109758533--109758714 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
109758523 TCGAATGATG
* * *
109758533 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
109758573 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
109758613 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
109758651 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
109758692 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
109758715 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:109758678 original size:78 final size:80
Alignment explanation
Indices: 109758533--109758714 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
109758523 TCGAATGATG
* * * *
109758533 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
109758598 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
109758613 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
109758675 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
109758692 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
109758715 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:109767001 original size:42 final size:41
Alignment explanation
Indices: 109766890--109767041 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 41
109766880 TTTCAAGATG
* *
109766890 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
109766931 TGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 T--GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * *
109766975 TGATTTCGTGTAAGACCCTATTTGGGACAATGG-ATCGATAT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* ** *
109767016 GTGATAATATGTAAGACCATATCTGG
1 -TGATTACGTGTAAGACCATGTCTGG
109767042 AATATGGCAT
Statistics
Matches: 93, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 8 0.09
42 46 0.49
43 35 0.38
44 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:109768741 original size:24 final size:24
Alignment explanation
Indices: 109768712--109768760 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
109768702 TGAATCAAGC
109768712 TTGAGAATAGCTGAACCTAAGCTT
1 TTGAGAATAGCTGAACCTAAGCTT
109768736 TTGAGAATAGCTGAACCTAAGCTT
1 TTGAGAATAGCTGAACCTAAGCTT
109768760 T
1 T
109768761 CTTAATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (24 bp):
TTGAGAATAGCTGAACCTAAGCTT
Found at i:109772192 original size:14 final size:14
Alignment explanation
Indices: 109772173--109772199 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
109772163 ATTTTTTAGG
109772173 TCATTTTCATTTTT
1 TCATTTTCATTTTT
109772187 TCATTTTCATTTT
1 TCATTTTCATTTT
109772200 AGAGAAAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (14 bp):
TCATTTTCATTTTT
Found at i:109773699 original size:24 final size:23
Alignment explanation
Indices: 109773667--109773767 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 23
109773657 TATCGATATA
*
109773667 CTAGCTCATAAGAGCTTATTGTT
1 CTAGCTCATAAGAGCTTACTGTT
**
109773690 CTTAGCTCATGTGAGCTTACTGTT
1 C-TAGCTCATAAGAGCTTACTGTT
* * *
109773714 C-AGCTCGTTAGAGCTTACTG-C
1 CTAGCTCATAAGAGCTTACTGTT
* *
109773735 CCAACTCA-ATAGAGCTTACTGTT
1 CTAGCTCATA-AGAGCTTACTGTT
109773758 CATCAGCTCA
1 C-T-AGCTCA
109773768 AAAGGAACTT
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
21 1 0.02
22 31 0.53
23 2 0.03
24 20 0.34
25 5 0.08
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (23 bp):
CTAGCTCATAAGAGCTTACTGTT
Found at i:109778289 original size:57 final size:58
Alignment explanation
Indices: 109778181--109778310 Score: 244
Period size: 57 Copynumber: 2.3 Consensus size: 58
109778171 GTGACGAGAT
109778181 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
*
109778239 TGGCACTAAGTGTGCATGCTGGAAA-ATATGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
109778296 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
109778311 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
57 46 0.65
58 25 0.35
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:109778331 original size:29 final size:29
Alignment explanation
Indices: 109778181--109778310 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
109778171 GTGACGAGAT
109778181 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109778210 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109778239 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
109778267 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109778296 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
109778311 GAGCTCGAAG
Statistics
Matches: 98, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
28 27 0.28
29 71 0.72
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:109786160 original size:29 final size:29
Alignment explanation
Indices: 109786009--109786139 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
109785999 GTGACGAGAT
109786009 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109786038 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
109786067 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
109786096 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109786125 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
109786140 GAGCTCGAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:109786186 original size:87 final size:87
Alignment explanation
Indices: 109786009--109786197 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
109785999 GTGACGAGAT
* *
109786009 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
109786074 AAGTGTGCATGCTGGAAAAATA
66 AAGTGTGCAGGCTGGAAAAACA
* * *
109786096 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * * **
109786160 TGTGTGTGCGGGCT-TAAATCGCA
65 TAAGTGTGCAGGCTGGAAA-AACA
109786183 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
109786198 GAAATCGAGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.03
87 82 0.95
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGGAAAAACA
Found at i:109791582 original size:16 final size:16
Alignment explanation
Indices: 109791554--109791588 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
109791544 TTTTCATATA
109791554 TCATTTGTCATGTATCT
1 TCATTTGTCATGTAT-T
109791571 TCATTT-TCATGTATT
1 TCATTTGTCATGTATT
109791586 TCA
1 TCA
109791589 AACGGATACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 8 0.44
17 6 0.33
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (16 bp):
TCATTTGTCATGTATT
Found at i:109794638 original size:27 final size:27
Alignment explanation
Indices: 109794574--109794758 Score: 153
Period size: 27 Copynumber: 6.9 Consensus size: 27
109794564 ATAAATACCT
* * *
109794574 CACAT-AGGGCAAAACAGTGAATTTAC
1 CACATAAGGGCAAATCAGTCATTTTAC
** * **
109794600 CATGTAAAGGCATTTCAGTCATTTTAC
1 CACATAAGGGCAAATCAGTCATTTTAC
*
109794627 CACATAAGGGCAAAAT-AGTCGTTTTAC
1 CACATAAGGGC-AAATCAGTCATTTTAC
* *
109794654 CAAATTAGGGCAAAAT-AGTCATTTTAC
1 CACATAAGGGC-AAATCAGTCATTTTAC
* * *
109794681 CACATAGGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAATCAGTCATTTTAC
* * *
109794708 CACATAGGGGCAAAACAGTCATTTCAC
1 CACATAAGGGCAAATCAGTCATTTTAC
*
109794735 CATATAAGGGCAAAAT-AGTCATTT
1 CACATAAGGGC-AAATCAGTCATTT
109794759 CATCAAATTA
Statistics
Matches: 128, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
26 6 0.05
27 117 0.91
28 5 0.04
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAATCAGTCATTTTAC
Found at i:109794655 original size:54 final size:54
Alignment explanation
Indices: 109794574--109794754 Score: 170
Period size: 54 Copynumber: 3.4 Consensus size: 54
109794564 ATAAATACCT
* ** * **
109794574 CACAT-AGGGCAAAACAGT-GAATTTACCATGTAAAGGCATTTCAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCG-TTTTACCAAATAAGGGCAAATCAGTCATTTTAC
* *
109794627 CACATAAGGGCAAAATAGTCGTTTTACCAAATTAGGGCAAAAT-AGTCATTTTAC
1 CACATAAGGGCAAAACAGTCGTTTTACCAAATAAGGGC-AAATCAGTCATTTTAC
* * * * * * *
109794681 CACATAGGGGCAAAACAATCATTTTACCACATAGGGGCAAAACAGTCATTTCAC
1 CACATAAGGGCAAAACAGTCGTTTTACCAAATAAGGGCAAATCAGTCATTTTAC
* *
109794735 CATATAAGGGCAAAATAGTC
1 CACATAAGGGCAAAACAGTC
109794755 ATTTCATCAA
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
53 8 0.08
54 92 0.89
55 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (54 bp):
CACATAAGGGCAAAACAGTCGTTTTACCAAATAAGGGCAAATCAGTCATTTTAC
Found at i:109794760 original size:27 final size:27
Alignment explanation
Indices: 109794616--109794758 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
109794606 AAGGCATTTC
109794616 AGTCATTTTACCACATAAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* * *
109794643 AGTCGTTTTACCAAATTAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* *
109794670 AGTCATTTTACCACATAGGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAT
* * *
109794697 AATCATTTTACCACATAGGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAT
* *
109794724 AGTCATTTCACCATATAAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
109794751 AGTCATTT
1 AGTCATTT
109794759 CATCAAATTA
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
AGTCATTTTACCACATAAGGGCAAAAT
Found at i:109798412 original size:34 final size:34
Alignment explanation
Indices: 109798369--109798440 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
109798359 TTTGTTTGCA
*
109798369 TACTGTTACTATAATGGGCTCAGGCCCAAATTAC
1 TACTGTTACTATAATGGGCTCAGGCCCAAACTAC
* *
109798403 TACTGTTACTGTAATGGGCTCAGGCCCAGACTAC
1 TACTGTTACTATAATGGGCTCAGGCCCAAACTAC
109798437 TACT
1 TACT
109798441 ATTATTGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (34 bp):
TACTGTTACTATAATGGGCTCAGGCCCAAACTAC
Found at i:109802058 original size:27 final size:27
Alignment explanation
Indices: 109802027--109802130 Score: 100
Period size: 27 Copynumber: 3.9 Consensus size: 27
109802017 CATATATCAC
*
109802027 ATAGGGGCAAAACAGTCAATTTACCAT
1 ATAGGGGCAAAACAGTCATTTTACCAT
* ***
109802054 GTAGGGGCATTTCAGTCATTTTACCAT
1 ATAGGGGCAAAACAGTCATTTTACCAT
* * *
109802081 ATAAGGGCAAAATAGTCATTTTACCAC
1 ATAGGGGCAAAACAGTCATTTTACCAT
** * *
109802108 ATAAAGGAAAAACATTCATTTTA
1 ATAGGGGCAAAACAGTCATTTTA
109802131 TCAATTAGGG
Statistics
Matches: 61, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
ATAGGGGCAAAACAGTCATTTTACCAT
Found at i:109803772 original size:39 final size:40
Alignment explanation
Indices: 109803729--109803895 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
109803719 CGGAATATAA
109803729 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTC-TAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
109803768 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
109803808 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
109803848 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
109803888 CCGGATAT
1 CCGGATAT
109803896 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
38 1 0.01
39 30 0.28
40 75 0.71
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:109810939 original size:40 final size:40
Alignment explanation
Indices: 109810894--109811023 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
109810884 CGGAATATAA
109810894 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
109810934 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
109810974 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
109811014 CCGGATATAA
1 CCGGATATAA
109811024 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:109811038 original size:40 final size:39
Alignment explanation
Indices: 109810910--109811060 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
109810900 ATAACCATGT
* * *
109810910 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
109810950 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
109810990 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
109811029 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
109811061 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:109811044 original size:80 final size:79
Alignment explanation
Indices: 109810894--109811060 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
109810884 CGGAATATAA
*
109810894 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
109810959 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
109810974 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
109811036 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
109811053 CCGGATAT
1 CCGGATAT
109811061 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:109812915 original size:61 final size:61
Alignment explanation
Indices: 109812820--109812953 Score: 250
Period size: 61 Copynumber: 2.2 Consensus size: 61
109812810 ATGCTGATTC
109812820 TGGAGTGTAGAGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTGGATGGAGA
1 TGGAGTGTAGAGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTGGATGGAGA
* *
109812881 TGGAGTGTAGGGATGGTTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTGGATGGAGA
1 TGGAGTGTAGAGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTGGATGGAGA
109812942 TGGAGTGTAGAG
1 TGGAGTGTAGAG
109812954 GCTAGATGGG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.22, C:0.07, G:0.42, T:0.28
Consensus pattern (61 bp):
TGGAGTGTAGAGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTGGATGGAGA
Found at i:109813003 original size:18 final size:18
Alignment explanation
Indices: 109812976--109813012 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
109812966 AGACTTGCGT
*
109812976 ACTGTTTACTATTACTGC
1 ACTGTATACTATTACTGC
*
109812994 ACTGTATACTGTTACTGC
1 ACTGTATACTATTACTGC
109813012 A
1 A
109813013 ATAGGCCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.41
Consensus pattern (18 bp):
ACTGTATACTATTACTGC
Found at i:109817581 original size:28 final size:28
Alignment explanation
Indices: 109817540--109817602 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
109817530 GTCATTATCA
*
109817540 ACCCCATAAGTTATAAAACTCTTCATAT
1 ACCCCATAAATTATAAAACTCTTCATAT
* * * *
109817568 ACCCCATAAATTATGAGACTTTTCTTAT
1 ACCCCATAAATTATAAAACTCTTCATAT
109817596 ACCCCAT
1 ACCCCAT
109817603 TAATATGGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.33
Consensus pattern (28 bp):
ACCCCATAAATTATAAAACTCTTCATAT
Found at i:109817917 original size:16 final size:15
Alignment explanation
Indices: 109817892--109817925 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
109817882 AAAGTTGATA
*
109817892 ATAATTGATATATATT
1 ATAATGGATATA-ATT
109817908 ATAATGGATATAATT
1 ATAATGGATATAATT
109817923 ATA
1 ATA
109817926 TATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (15 bp):
ATAATGGATATAATT
Found at i:109818041 original size:29 final size:30
Alignment explanation
Indices: 109817984--109818041 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
109817974 CTTTTGAAAA
*** *
109817984 TATTTACAAAAAGAGGCATTTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
109818014 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
109818042 AAAAGTACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:109818510 original size:25 final size:25
Alignment explanation
Indices: 109818476--109818525 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
109818466 TAAATGGACC
109818476 GGACCAACGTGATTTTAATTTACCT
1 GGACCAACGTGATTTTAATTTACCT
109818501 GGACCAACGTGATTTTAATTTACCT
1 GGACCAACGTGATTTTAATTTACCT
109818526 AGAAAGAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (25 bp):
GGACCAACGTGATTTTAATTTACCT
Found at i:109831623 original size:2 final size:2
Alignment explanation
Indices: 109831616--109831647 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
109831606 TGAAATTACG
109831616 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
109831648 CACTAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:109836423 original size:30 final size:30
Alignment explanation
Indices: 109836379--109836447 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
109836369 CAAAGATAAC
*
109836379 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
109836408 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
109836438 AAGAAACCCA
1 AAGAAACCCA
109836448 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:109836452 original size:15 final size:15
Alignment explanation
Indices: 109836390--109836452 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
109836380 AGAAAACCGA
*
109836390 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
109836405 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
109836419 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
109836435 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
109836450 ATA
1 ATA
109836453 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:109839441 original size:93 final size:93
Alignment explanation
Indices: 109839329--109839500 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
109839319 GCCCATAAGT
* *
109839329 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109839394 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
109839422 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109839487 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
109839501 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:109839496 original size:46 final size:46
Alignment explanation
Indices: 109839321--109839496 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
109839311 TGTAACCCGC
* * *
109839321 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
109839367 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
109839417 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
109839460 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
109839497 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:109841912 original size:30 final size:30
Alignment explanation
Indices: 109841868--109841936 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
109841858 CAAAGATAAC
*
109841868 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
109841897 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
109841927 AAGAAACCCA
1 AAGAAACCCA
109841937 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:109841941 original size:15 final size:15
Alignment explanation
Indices: 109841879--109841941 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
109841869 AGAAAACCGA
*
109841879 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
109841894 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
109841908 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
109841924 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
109841939 ATA
1 ATA
109841942 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:109844956 original size:93 final size:93
Alignment explanation
Indices: 109844844--109845014 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
109844834 CGCCCAAAGT
*
109844844 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
109844908 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
109844937 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
109845002 CGAGTTCGGATGC
66 CGAGCTCGGATGC
109845015 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:109845011 original size:46 final size:45
Alignment explanation
Indices: 109844840--109845010 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 45
109844830 AACCCGCCCA
*
109844840 AAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCATCCAT
* *
109844886 AAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTTACAT
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--TCCAT
*** *
109844932 CTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 AAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCAT
*
109844979 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGTGAACTCGGACTCAACTCAACGAGCTCGG
109845011 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 63 0.59
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCAT
Found at i:109845030 original size:46 final size:46
Alignment explanation
Indices: 109844841--109845030 Score: 137
Period size: 46 Copynumber: 4.1 Consensus size: 46
109844831 ACCCGCCCAA
* * *
109844841 AGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GGATGCTCAACCATCC-T
109844886 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * * *
109844936 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCT
*
109844980 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
109845026 AGTGA
1 AGTGA
109845031 CATGTCACTT
Statistics
Matches: 116, Mismatches: 12, Indels: 32
0.73 0.08 0.20
Matches are distributed among these distances:
44 9 0.08
45 3 0.03
46 63 0.54
47 30 0.26
49 4 0.03
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:109853353 original size:14 final size:15
Alignment explanation
Indices: 109853334--109853362 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
109853324 GACCTAGATG
109853334 TTTAAA-AATTGAAA
1 TTTAAATAATTGAAA
109853348 TTTAAATAATTGAAA
1 TTTAAATAATTGAAA
109853363 ACTGTTAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (15 bp):
TTTAAATAATTGAAA
Found at i:109865463 original size:18 final size:18
Alignment explanation
Indices: 109865440--109865475 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
109865430 AATTGGTAGT
109865440 TTAGATATAAGTCATGCA
1 TTAGATATAAGTCATGCA
109865458 TTAGATATAAGTCATGCA
1 TTAGATATAAGTCATGCA
109865476 ACTAGGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (18 bp):
TTAGATATAAGTCATGCA
Found at i:109868238 original size:29 final size:29
Alignment explanation
Indices: 109868205--109868278 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
109868195 CCTTCGAGCT
109868205 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
109868234 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
109868263 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
109868279 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:109868239 original size:58 final size:58
Alignment explanation
Indices: 109868146--109868278 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
109868136 ATACTCGATT
* * * * *
109868146 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
109868204 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
109868262 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
109868279 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:109876057 original size:29 final size:29
Alignment explanation
Indices: 109876023--109876154 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
109876013 TACTCGATTT
** * *
109876023 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
109876052 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
109876081 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
109876110 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
109876139 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
109876155 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:109879200 original size:540 final size:540
Alignment explanation
Indices: 109878182--109882827 Score: 7979
Period size: 540 Copynumber: 8.6 Consensus size: 540
109878172 TAGAGTTATG
*
109878182 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCGGCCAAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
* *
109878247 TGAAGATGACCAAACTTTTGCTTTTCTTTTGTTTATGTAAAAATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
109878312 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
* *
109878377 TAAAATAATTTTCATTCAATTTATTTTCAGCTTAAGCCTAGCCAAACCACTTTCATAACTATAAA
196 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
* *
109878442 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAAATTTTACAAATTAGTCATTT
261 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
* *
109878507 TTAGCATTTTCATTGAAAATCACTTAGCACAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
*
109878572 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTCCATCATAACTCA
391 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
109878637 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
456 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
109878702 GGGGCAAGAACGGACTTACT
521 GGGGCAAGAACGGACTTACT
109878722 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
109878787 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
109878852 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
*
109878917 TAAAATAATTTTCATTCAATTTATTTTTACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
196 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
* *
109878982 AATGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTCTACAAATTAGTCCTTT
261 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
109879047 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
* * * *
109879112 CCATTAAACATCAAAATACACAAATTTATAACATGGTTGAAACCCTAGACCTTCATCATAAGTCA
391 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
* * * * *
109879177 AATCAATGGTAGAAAGAGGTAGATCATGTTATAAGGATTTCAAGAATGTGAAAATCATTAAAAAC
456 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
*
109879242 GGGGCAAGAACGAACTTACT
521 GGGGCAAGAACGGACTTACT
** * *
109879262 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAAATTCGGCCGAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
* * *
109879327 TGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
* * * * * * *
109879392 ACTACGGCAAAAATTAAATTTTTGCCCGTAAATTTTATCTTATTTACACTTTTAAGCCC--A-GA
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCAT-TTTACACTTTT--GCCCATAGGC
* *
109879454 TTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTAT
193 TTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTAT
* *
109879519 AAAAAC-CAACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAACTAGT
258 AAAAACGC-ACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAACTTTTACAAATTAGT
*
109879583 CCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATA
321 CCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATA
109879648 ATCTACCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACC-TCTATCAT
386 ATCTACCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTC-ATCAT
109879712 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
450 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
109879777 AAAAACGGGGCAAGAACGGACTTACT
515 AAAAACGGGGCAAGAACGGACTTACT
109879803 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
109879868 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
*
109879933 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTTCCCATAGGCTTT
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
*
109879998 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCAAACCACTTTCATAACTATAAA
196 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
109880063 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCC-TT
261 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
*
109880127 TTAGCATTTTCATTGAAAATCACTTAGCACAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
* *
109880192 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAAACCTCCATCATAACT-A
391 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
109880256 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
456 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
109880321 GGGGCAAGAACGGACTTACT
521 GGGGCAAGAACGGACTTACT
109880341 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
*
109880406 TGAAGATGACCAAACATTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
*
109880471 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTACCCATAGGCTTT
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
109880536 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
196 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
109880601 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
261 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
109880666 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
* * * *
109880731 CCATTAAACATCAAAATACACAAATTTATAACATGGTTGAAACCCTAGACCTTCATCATAAGTCA
391 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
* * * * *
109880796 AATCAATGGTAGAAAGAGGTAGATCATGTTATAAGGATTTCAAGAATGTGAAAATCATTAAAAAC
456 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
*
109880861 GGGGCAAGAACGAACTTACT
521 GGGGCAAGAACGGACTTACT
* * *
109880881 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGATCTTC-AACATTTCGGCCGAGGGG
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAC-TTTCAGCCAAGGGG
* * * *
109880945 TTGAAGATGACCAAAATTTGGCTTTAATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCA
65 TTGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCA
* * * * * * *** *
109881010 TACTACGGCAAAAATTAAATTTTTGCCCTTAAATTTTATCTTATTTACACTTTTAAGC-TAGGAT
130 TACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCAT-TTTACACTTTTGCCCATAGGCT
*
109881074 TGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATA
194 TTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATA
* *
109881139 AAAAC-CAACAATTTCCACTAAATCACACTTTTATGATAAATTTTATAACTTTTACAAATTAGTC
259 AAAACGC-ACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAACTTTTACAAATTAGTC
*
109881203 CTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAA
322 CTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAA
109881268 TCTACCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACC-TCTATCATA
387 TCTACCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTC-ATCATA
109881332 ACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTA
451 ACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTA
109881397 AAAACGGGGCAAGAACGGACTTACT
516 AAAACGGGGCAAGAACGGACTTACT
* *
109881422 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAACCATGGTGGTCTTCAAACTTTCTGCCAAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
109881487 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
109881552 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
*
109881617 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCAAACCACTTTCATAACTATAAA
196 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
109881682 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
261 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
*
109881747 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
*
109881812 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTCCATCATAACTCA
391 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
*
109881877 AATAAATGGTAGAAATAGGTAGATAATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
456 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
109881942 GGGGCAAGAACGGACTTACT
521 GGGGCAAGAACGGACTTACT
109881962 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
*
109882027 TGAAGATGACCAAACATTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
66 TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
*
109882092 ACTATGGCGAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
131 ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
*
109882157 TAAAATAATTTTCATTCAATTTATTCTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
196 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
*
109882222 AACGCACAATTTCAACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
261 AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
109882287 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
* * * *
109882352 CCATTAAACATCAAAATACACAAATTTATAGCATGGTTGAAACCCTAGACCTTCATCATAAGTCA
391 CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
* * * * *
109882417 AATCAATGGTAGAAAGAGGTAGATCATGTTATAAGGATTTCAAGAATGTGAAAATCATTAAAAAC
456 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
*
109882482 GGGGCAAGAACGAACTTACT
521 GGGGCAAGAACGGACTTACT
* *
109882502 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC-AACATTTCGGCCGAGGGG
1 ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAC-TTTCAGCCAAGGGG
* * * *
109882566 TTGAAGATGACCAAAATTTGGCTTTAATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCA
65 TTGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCA
* * * * * * *** *
109882631 TACTACGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGC-TAGGAT
130 TACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCAT-TTTACACTTTTGCCCATAGGCT
* *
109882695 TGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATA
194 TTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATA
* *
109882760 AAAAC-CAACTATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTC
259 AAAACGC-ACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAACTTTTACAAATTAGTC
109882824 CTTT
322 CTTT
109882828 GTAACACCCC
Statistics
Matches: 3884, Mismatches: 196, Indels: 51
0.94 0.05 0.01
Matches are distributed among these distances:
538 408 0.11
539 256 0.07
540 2165 0.56
541 1046 0.27
542 5 0.00
543 4 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (540 bp):
ATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAACTTTCAGCCAAGGGGT
TGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTAAACATTTAATTACTAAATTTTATCAT
ACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATCATTTTACACTTTTGCCCATAGGCTTT
TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
AACGCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTT
TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
CCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTTCATCATAACTCA
AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
GGGGCAAGAACGGACTTACT
Found at i:109884250 original size:40 final size:40
Alignment explanation
Indices: 109884205--109884334 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
109884195 CGGAATACAA
109884205 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTA-GCACGAATGCCTTCGGGTCTTAGC
* ** *
109884245 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
109884285 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
109884325 CCGGATATAA
1 CCGGATATAA
109884335 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.03
40 73 0.97
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:109884349 original size:40 final size:40
Alignment explanation
Indices: 109884205--109884368 Score: 147
Period size: 40 Copynumber: 4.1 Consensus size: 40
109884195 CGGAATACAA
*
109884205 CCGGATATAACCA-CATGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCAC-AATTGCCTTCGGGTCTTAGC
* *
109884245 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
109884285 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
109884325 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
109884365 CCGG
1 CCGG
109884369 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.02
40 97 0.97
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:109893092 original size:40 final size:40
Alignment explanation
Indices: 109892965--109893094 Score: 158
Period size: 40 Copynumber: 3.2 Consensus size: 40
109892955 ATGCTGGAAA
*
109892965 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGG
* * **
109893005 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-ATGTGG
*
109893045 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
109893085 TTATATCCGG
1 TTATATCCGG
109893095 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
Found at i:109895884 original size:539 final size:540
Alignment explanation
Indices: 109894472--109902776 Score: 13705
Period size: 540 Copynumber: 15.4 Consensus size: 540
109894462 GGGGTGTTAC
*
109894472 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATAGTTG-G
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTG-TGCG
*
109894536 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTT
64 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
* * *** * * *
109894601 TACAATCCTA-GCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCGT
129 TAAAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
* *
109894665 AGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATTAAAGCCAAATTTTGGTCATCT
193 AGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCT
*
109894730 TCAACCCCTCGGCCGAAA-TGTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
258 TCAACCCCTTGGCCGAAAGT-TTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
* * * *
109894794 CCATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTATAACATG
322 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
* * * * *
109894859 ATCTACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGCTATAAA
387 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAA
*
109894924 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTA
452 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
109894989 AGTGATTTTCAATGAAAATGCTAA
517 AGTGATTTTCAATGAAAATGCTAA
* *
109895013 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTTGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
*
109895078 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAGAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * * *
109895143 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTCGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
*
109895208 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGC-AAATGTTTGGTCATCTTC
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAAT-TTTGGTCATCTTC
*
109895272 AACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
260 AACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
*
109895337 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATTATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* *
109895402 TACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTT
109895467 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
109895532 GATTTTCAATGAAAATGCTAA
520 GATTTTCAATGAAAATGCTAA
*
109895553 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGT-GAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
*
109895617 TTTATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * *
109895682 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
* *
109895747 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCA
* *
109895812 ACCCCTTGGCAGAAAGTTTGAAGACCACCATGGTTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
*
109895877 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATAT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
*
109895942 ACCTATTTCTACCATTTATTTGAGTTATGAT-AGAGGTCTAGGGTTTGAACTATGATATAAATTT
391 ACCTATTTCTACCATTTATTTGAGTTATGATGA-AGGTCTAGGGTTTGAACCATGATATAAATTT
* *
109896006 GTGTATTTTGATGTTTAATGGTAGATTATGAATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
*
109896071 GATTTTCAATGAAAATACT--
520 GATTTTCAATGAAAATGCTAA
*
109896090 --A--A--AA-TTGTAAAAGTTATAAAATTTATCATAAAAGTGTGATTTAGTGGAAATTGTTG-G
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTG-TGCG
109896147 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
64 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
* * *** * * *
109896212 TACAATCCTA-GCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCGT
129 TAAAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCAT
* *
109896276 AGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATTAAAGCCAAATTTTGGTCATCT
193 AGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCT
*
109896341 TCAACCCCTCGGCCGAAA-TGTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
258 TCAACCCCTTGGCCGAAAGT-TTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
* * * *
109896405 CCATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTATAACATG
322 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
* * * * *
109896470 ATCTACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGTTATAAA
387 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAA
*
109896535 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTA
452 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
109896600 AGTGATTTTCAATGAAAATGCTAA
517 AGTGATTTTCAATGAAAATGCTAA
*
109896624 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
109896689 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * * *
109896754 AAAGCCTATGGGTAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
*
109896819 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGC-AAATGTTTGGTCATCTTC
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAAT-TTTGGTCATCTTC
*
109896883 AACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
260 AACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
*
109896948 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGGTTTTGAAATCCTTGTAACATGATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* * * *
109897013 TACCTATTTCTACCATTTATTTTAGTTATGATGGAGGTTTAGGGTTTGAACTATGATATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTT
* *
109897078 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTGTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
109897143 GATTTTCAATGAAAATGCT-A
520 GATTTTCAATGAAAATGCTAA
*
109897163 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
*
109897228 TTTATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * * *
109897293 AAAGCCTATGGGAAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
* *
109897358 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCA
*
109897423 ACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
109897488 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
*
109897553 ACCTATTTCTACCATTTATTTGAGTTATGAT-AGAGGTCTAGGGTTTGAACTATGATATAAATTT
391 ACCTATTTCTACCATTTATTTGAGTTATGATGA-AGGTCTAGGGTTTGAACCATGATATAAATTT
*
109897617 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
*
109897682 GATTTTCAATGAAAATACTAA
520 GATTTTCAATGAAAATGCTAA
* *
109897703 AAAGGACTAGTTTGTAAAAGTTATAAAATTTATCATAAAAGTGTGATTTAGTGGAAATTGTTG-G
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTG-TGCG
*
109897767 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTT
64 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
* * * * *
109897832 TACAATCC---GGGCTTAAAAGTGTAAATAAGATAAAATTTACGGGCAAAAATTTAATTTTTGCC
129 TAAAAGCCTATGGGC--AAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCC
* *
109897894 GTAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
191 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCAT
* *
109897959 CTTCAACCCCTCGGCCG-AATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
256 CTTCAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
* * *
109898023 TCCATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTTTTGAAATCCTTATAACAT
321 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
* * * * *
109898088 GATCTACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGTTATAA
386 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAA
*
109898153 ATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCT
451 ATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCT
109898218 AAGTGATTTTCAATGAAAATGCTAA
516 AAGTGATTTTCAATGAAAATGCTAA
* *
109898243 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCATT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
109898308 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * *
109898373 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
* *
109898438 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCA
*
109898503 ACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
109898568 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
* *
109898633 ACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTTG
391 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTTG
109898698 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAAC-TTTGCTAAGTG
456 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
*
109898762 ATTTTCAATGAAAATGCTGA
521 ATTTTCAATGAAAATGCTAA
* *
109898782 AAATGACTAATTTGTAAAA-TTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
* *
109898846 TTTATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGCTGAAAATAAATTGAAT-AAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * *
109898910 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
* * *
109898975 ATGATAAAATTTAGTAATTAAAT-TTTACATAAACAAAAGAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCA
109899039 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
* * *
109899104 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTATAACATGATCT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
* * * * *
109899169 ACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGTTATAAATTTG
391 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTTG
109899234 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
456 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
109899299 ATTTTCAATGAAAATGCTAA
521 ATTTTCAATGAAAATGCTAA
* * *
109899319 AAAGGACTAATTTGTGAAAGTTATAAAATTTGTCCTAAAAGTGTGATTTAGTGGAAATTGTGGGT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGCGT
* *
109899384 TTTTATAGTTATGAAAGTGGTTCTGCTGGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
65 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
*
109899449 AAAAGCCTAGGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
130 AAAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
* * * *
109899514 TATGATAAAATATAGTAGTTAAATGTTTAAATGAACAAAATAAAAGTAAAATTTTGGTCATCTTC
195 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTC
*
109899579 AACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
260 AACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
*
109899644 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATTATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* *
109899709 TACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTT
109899774 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
109899839 GATTTTCAATGAAAATGCTAA
520 GATTTTCAATGAAAATGCTAA
*
109899860 AAAGGACTAATTTGTAAAAGTTAT-AAATTTTTCATAAAGTGTGATTTAGTGGAAATTGTG-GTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
* *
109899923 TTTATAGTTATGAAAGTGGTTTGGCTAGGGTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * *
109899988 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
* * *
109900053 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAACAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCA
* *
109900118 ACCCCTTGGCTGAAA-TTTGGAGACCACCATGG-TAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
109900181 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
* *
109900246 ACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTTG
391 ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTTG
*
109900311 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTG
456 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
*
109900376 ATTTTCAATGAAAATACTAA
521 ATTTTCAATGAAAATGCTAA
*
109900396 AAAGGACTAGTTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTG-GT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGCGT
*
109900460 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTT
65 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
* * *** * * *
109900525 ACAATCCTA-GCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCGTA
130 AAAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATA
*
109900589 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTT
194 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTT
* *
109900654 CAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
259 CAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
* * * *
109900719 ATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTTATAACATGAT
324 ATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGAT
* * * *
109900784 CTACCTATTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGTTATAAATT
389 CTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATT
109900849 TGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAG
454 TGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAG
109900914 TGATTTTCAATGAAAATGCTAA
519 TGATTTTCAATGAAAATGCTAA
* * * *
109900936 AAAGGACTAATTTGTGAAAGTTATAAAATTTATCCTAAAAGTGTGATTTAGTGGAAATTGTGGGT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGCGT
* *
109901001 TTTTATAGTTATGAAAGTGGTTCTGCTGGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
65 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
*
109901066 AAAAGCCTAAGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
130 AAAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
* *
109901131 TATGATAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAGTAAAATTTTGGTCATCTTC
195 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTC
*
109901196 AACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-T--A
260 AACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
* * *
109901258 -AGT---T-CGTTCTTG-CTCGTTTTTAATGATTTTCACATTCTTGAAATCCTTGTAACATGATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* * *
109901317 TACCTATTTCTACCATTTATTTGACTTATGATGAAGGTCTAGGATTTGAACCATGTTATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTT
*
109901382 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGCTTGGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
*
109901447 GATTTTCAATGAAAATACTAA
520 GATTTTCAATGAAAATGCTAA
* * *
109901468 AAAGGACTAATTTGTAAGAGTTATAAAATTTGTCGTAAACGTGTGATTTAGTGGAAATTGTGGGT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAA-GTGTGATTTAGTGGAAATTGTGCGT
*
109901533 TTTTATAGTTATGAAAGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
65 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
*
109901598 AAAAGCCTAGGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
130 AAAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
* *
109901663 TATGATAAAATTTAGTAGTTAACTGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTC
195 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTC
*
109901728 AACCCCTTGGCCGAAATTTTGAAGACCA-CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
260 AACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
109901792 TAGTAAGTCCGTTCTT-CCCCGTTTTTAATG-TTTTCACGTTTTTGAAATCCTTGTAACATGATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* *
109901855 TACCTA-TTCTACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTT
*
109901919 GTGTATTTTGATGTTGAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
109901984 GATTTTCAATGAAAATGCTAA
520 GATTTTCAATGAAAATGCTAA
* * *
109902005 AAAGGACTAATTTGTAAAAGTTATAAAATTT-TAATAAAATGTGATTTAGTGGAAATTGTGGGTT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
* **
109902069 TTTATAGTTATGAAAGTGGTTCGGCTATGCTTAAATTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
* * *
109902134 CAAGCCTA-GGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTTCCATAG
131 AAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAG
*
109902198 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGC-AAATTTTGGTCATCTTA
195 TATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTC
* *
109902262 AACCCATTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
260 AACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
109902327 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACG-TTTTGAAATCCTTGTAACATGATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
* * *
109902391 TACCTATTTCTACCA-TTATTTGAGTTATGATGAAGGTTTAGGGTCTGAACCATGTTATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTT
*
109902455 TTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGT
* *
109902520 TATTTTCAATGACAATGCTAA
520 GATTTTCAATGAAAATGCTAA
* * *
109902541 AAAGGACTAATTTGTAAAACTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGT
1 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCAT-AAAGTGTGATTTAGTGGAAATTGTGCGT
** *
109902606 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAATTGAAAATAAATTGAATGAAAATTGTTTT
65 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
* * * *
109902671 ACAAGCCTA-GGGTAAAAGTGTAAATATGATAAAATTTAAGGGCAAAAATGTAATTTTTTCCATA
130 AAAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATA
*
109902735 GTATGAAAAAATTTAGTAATTAAATGTTTAAATAAACAAAAT
194 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAAT
109902777 TGTAACGCCC
Statistics
Matches: 7339, Mismatches: 357, Indels: 139
0.94 0.05 0.02
Matches are distributed among these distances:
530 23 0.00
531 64 0.01
532 902 0.12
533 12 0.00
534 59 0.01
535 233 0.03
536 753 0.10
537 375 0.05
538 750 0.10
539 1390 0.19
540 1918 0.26
541 842 0.11
542 18 0.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (540 bp):
AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
AAAGCCTATGGGCAAAAGTGTAAAATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGT
ATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCA
ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
ACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGATATAAATTTG
TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTG
ATTTTCAATGAAAATGCTAA
Found at i:109903391 original size:12 final size:13
Alignment explanation
Indices: 109903363--109903395 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
109903353 TTATTTCTTT
109903363 TTCTCCATCTACC
1 TTCTCCATCTACC
*
109903376 TTCTCC-TCTTCC
1 TTCTCCATCTACC
109903388 TTCTCCAT
1 TTCTCCAT
109903396 AGGCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:109904492 original size:28 final size:28
Alignment explanation
Indices: 109904460--109904524 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
109904450 ATTTACTAGA
*
109904460 ATACCCCTATGTATGA-AAAATTACCATT
1 ATACCCCTATGTAT-ACAAAATGACCATT
* *
109904488 ATACCCCTATGTGTACAAAATGACCTTT
1 ATACCCCTATGTATACAAAATGACCATT
109904516 ATACCCCTA
1 ATACCCCTA
109904525 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATACAAAATGACCATT
Found at i:109904688 original size:27 final size:28
Alignment explanation
Indices: 109904630--109904719 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
109904620 AGGAATCGTC
109904630 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCCCTGCCACAAATTATCTGTT
**
109904658 CTGGTGGCCCTGCCACGTA-TATCTGTT
1 CTGGTGGCCCTGCCACAAATTATCTGTT
* * *
109904685 CTGGTGGCACTGCTACAAAATATCTGTAT
1 CTGGTGGCCCTGCCACAAATTATCTGT-T
109904714 CTGGTG
1 CTGGTG
109904720 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCCCTGCCACAAATTATCTGTT
Found at i:109907941 original size:543 final size:541
Alignment explanation
Indices: 109905667--109908105 Score: 4297
Period size: 542 Copynumber: 4.5 Consensus size: 541
109905657 GGTGTTACAG
109905667 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCC-AAATTTTGAAGACCACCATGGCTA
1 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
*
109905731 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAAAGATTTTC
66 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTC
109905796 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
131 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
109905861 TCTAGGG-TTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
196 TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
*
109905925 ATGGTTAAGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGT
261 ATGGTT-GGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGT
109905990 AAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAA
325 AAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAA
* * * *
109906055 AGTGGTTCTGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGGGCA
390 AGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-GGGTA
*
109906120 AAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCATAGTATGATAAAATTTA
454 AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTTCCATAGTATGATAAAATTTA
* *
109906184 GTAGTTTAATGTTTAAATAAACA
519 GTAATTAAATGTTTAAATAAACA
* *
109906207 AAATAAAAGCAAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTA
1 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
*
109906272 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAATCTGTTCTTGCCCCGTTTTTAATGATTTTC
66 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTC
*
109906337 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGG
131 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
* * *
109906402 TTTAGGGTTTTAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
196 TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
109906467 ATGGTTGGAGAAACAA-TTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
261 ATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
109906531 AAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAA
326 AAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAA
*
109906595 GTGGTTCGGCTAGGCTTAAATTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAA
391 GTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAA
*
109906660 AGTGTAAATATGATAAAATTTA-GGGCAAAAATGTAA--TTTTCCATAGTATGATAAAATTTAGT
456 AGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTTCCATAGTATGATAAAATTTAGT
109906722 AATTAAATGTTTAAAT-AA-A
521 AATTAAATGTTTAAATAAACA
109906741 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
1 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
109906806 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTT-TTGCCCCGTTTTTAATGATTTTC
66 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTC
109906870 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
131 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
*
109906935 TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTT
196 TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
*
109907000 ATGGTTAGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
261 ATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
*
109907065 AAAGTTATAAAATTTGTCATAAAAGTATGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAA
326 AAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAA
*
109907130 GTGGTTCGGCTCGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAA
391 GTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAA
* * * *
109907195 AGTGTAAATAAGATAAAATTTAGGGGCATAAATTTAATTTTTACCGTAGTATGATAAAATTTAGT
456 AGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTTCCATAGTATGATAAAATTTAGT
*
109907260 AATTACATGTTTAAATAAACA
521 AATTAAATGTTTAAATAAACA
*
109907281 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCTGAAATTTTGAAGACCACCATGGCTA
1 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
* * *
109907346 GGATTTTGTTTAAGCTTTCCAAGGTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTC
66 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTC
* * * * *
109907411 ATGTTTTTGAAATCCTTGTAACATGATCTACCAATTTCTACCATTATATTTGAGTTATGGTGAAC
131 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATT-TATTTGAGTTATGATGGAG
* * * *
109907476 GTCAAGGGTTTGAACCATGTTATAAATTTTTGTATTTTGATGTTTAATAGTAGATTATGCATGTT
195 GTCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTT
* * *
109907541 TATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTGAATGACAATGCTAAAAAGGAATAATTTGT
260 TATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGT
* * *
109907606 AAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATAGTTGGTTTTTATAGTTATGAA
325 AAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAA
* * * *
109907671 AGTGGTTCGGCTAGGCTTAAATTTAAAAAAAAATTGAATGAAAATTATTTTACAAGCCTTGGGTA
390 AGTGGTTCGGCTAGGCTTAAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTA
109907736 AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTTCCATAGTATGATAAAATTTA
454 AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTTCCATAGTATGATAAAATTTA
109907801 GTAATTAAATGTTTAAATAAACA
519 GTAATTAAATGTTTAAATAAACA
109907824 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
1 AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
*
109907889 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATGATTTTC
66 GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTC
109907954 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
131 ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
*
109908019 TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGTTGTTTAATGGTAGATTATGCATGTTT
196 TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
109908084 ATGGTTGGAGAAACAACTTTTG
261 ATGGTTGGAGAAACAACTTTTG
109908106 TAACACCCCG
Statistics
Matches: 1803, Mismatches: 83, Indels: 24
0.94 0.04 0.01
Matches are distributed among these distances:
533 163 0.09
534 167 0.09
535 134 0.07
536 51 0.03
538 66 0.04
539 118 0.07
540 204 0.11
541 232 0.13
542 378 0.21
543 290 0.16
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (541 bp):
AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTA
GGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATGATTTTC
ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGG
TCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT
ATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTA
AAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAA
GTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAA
AGTGTAAATATGATAAAATTTAGGGGCAAAAATTTAATTTTTTCCATAGTATGATAAAATTTAGT
AATTAAATGTTTAAATAAACA
Found at i:109909127 original size:27 final size:27
Alignment explanation
Indices: 109909088--109909215 Score: 100
Period size: 27 Copynumber: 4.7 Consensus size: 27
109909078 TTAGAATACT
*
109909088 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACCGAAATACCC
* *
109909116 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACCGAAATACCC
* *
109909143 -TCGATTTGTAAATTTACCGAAATA-CC
1 TTAG-TTTGTAAAATTACCGAAATACCC
* *
109909169 TTCGACTTGTAAAATTACC-AAAGTACCC
1 TTAG-TTTGTAAAATTACCGAAA-TACCC
* * * *
109909197 TCAATTTATAGAATTACCG
1 TTAGTTTGTAAAATTACCG
109909216 TTTTACCCCT
Statistics
Matches: 80, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
26 7 0.09
27 63 0.79
28 10 0.12
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCGAAATACCC
Found at i:109909196 original size:54 final size:54
Alignment explanation
Indices: 109909097--109909215 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 54
109909087 TTTAGTTTAC
* * *
109909097 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
* * * *
109909151 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTTA
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTTG
*
109909205 TAGAATTACCG
1 TAAAATTACCG
109909216 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 8 0.15
54 46 0.85
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
Found at i:109909484 original size:27 final size:27
Alignment explanation
Indices: 109909192--109909483 Score: 315
Period size: 27 Copynumber: 10.9 Consensus size: 27
109909182 ATTACCAAAG
* * *
109909192 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
109909219 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
109909246 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
109909273 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109909300 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
109909327 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109909354 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109909381 TACCCTCGATTT-CAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
109909407 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109909434 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109909461 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
109909484 AAAATACCCT
Statistics
Matches: 231, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 22 0.10
27 206 0.89
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:109909491 original size:27 final size:27
Alignment explanation
Indices: 109909300--109909681 Score: 107
Period size: 27 Copynumber: 14.1 Consensus size: 27
109909290 ATTACCGTTT
** ****
109909300 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ***
109909327 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
109909354 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
**
109909381 TACCCTCGATTT-CAAAATTATCGT--TT
1 TACCCTCGATTTACAAAATTA-C-TAAAA
* * * ***
109909407 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
109909434 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
109909461 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
109909488 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
109909515 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
109909542 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
109909569 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
109909596 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
109909623 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
109909652 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
109909679 TAC
1 TAC
109909682 TTTTGGTTTG
Statistics
Matches: 295, Mismatches: 43, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.00
26 24 0.08
27 243 0.82
28 8 0.03
29 19 0.06
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:109909519 original size:54 final size:54
Alignment explanation
Indices: 109909461--109909600 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
109909451 ATTACTATTT
* ** * *
109909461 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGCTTGTAAAATTACCAAAA
* * * *
109909515 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTAGCTTGTAAAATTACCAAAA
109909569 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
109909601 CTGATTTACA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 72 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGCTTGTAAAATTACCAAAA
Found at i:109909519 original size:134 final size:134
Alignment explanation
Indices: 109909249--109909519 Score: 314
Period size: 134 Copynumber: 2.0 Consensus size: 134
109909239 ACCGTTTTAC
* *
109909249 CCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTAC
1 CCCTGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTAC
* * * * * *** * *
109909314 TGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTAT
66 AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCAA
**
109909379 TTTA
131 AATA
* * * * *
109909383 CCCTCGATTT-CAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATTTA
1 CCCT-GATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTA
*
109909447 CAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTA-A-AATTAC
65 CAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT-GATT-TACAGAATTAC
109909510 CAAAATA
128 CAAAATA
109909517 CCC
1 CCC
109909520 CTAGTTTGTA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
134 103 0.90
135 9 0.08
136 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (134 bp):
CCCTGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTAC
AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCAA
AATA
Found at i:109909623 original size:54 final size:54
Alignment explanation
Indices: 109909461--109909628 Score: 155
Period size: 54 Copynumber: 3.1 Consensus size: 54
109909451 ATTACTATTT
* ** * * * * *
109909461 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGGATTGTCAAATTA-CAGAAA
* * * * *
109909515 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTGGATTGTCAAATTACAGAAA
109909569 TACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGGATTGT-CAAA-TTACAGAAA
109909623 TACCCT
1 TACCCT
109909629 TGACTTTCTA
Statistics
Matches: 95, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 85 0.89
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGGATTGTCAAATTACAGAAA
Found at i:109909624 original size:81 final size:81
Alignment explanation
Indices: 109909476--109909630 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
109909466 TCGATTTACA
* * * *
109909476 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
109909541 ATACCCTTGGCTTGTG
66 ATACCCTTGGCTTGTG
*
109909557 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
109909619 GAAATACCCTTG
64 -AAATACCCTTG
109909631 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGCTTGTG
Found at i:109909687 original size:27 final size:27
Alignment explanation
Indices: 109909639--109909690 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
109909629 TGACTTTCTA
109909639 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
**
109909666 AAAATTACT-GAAATACTTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
109909691 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:109909774 original size:27 final size:27
Alignment explanation
Indices: 109909744--109909834 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
109909734 ACCCCTATTA
*
109909744 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
109909771 GGTAAAGTGATCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
109909798 GGTAAAGTG-CCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
109909824 GGTAAAATGAC
1 GGTAAAATGAC
109909835 GAATATGCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 20 0.37
27 34 0.63
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:109911137 original size:20 final size:20
Alignment explanation
Indices: 109911077--109911137 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
109911067 ATAAATATGG
*
109911077 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
109911097 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
109911117 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
109911137 T
1 T
109911138 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:109911214 original size:24 final size:24
Alignment explanation
Indices: 109911187--109911329 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
109911177 GAGGAAGTGA
109911187 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
109911211 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
109911235 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
109911258 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
109911282 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
109911306 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
109911330 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:109911280 original size:47 final size:47
Alignment explanation
Indices: 109911187--109911329 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
109911177 GAGGAAGTGA
109911187 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
109911235 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
109911282 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
109911330 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:109911303 original size:71 final size:72
Alignment explanation
Indices: 109911187--109911330 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
109911177 GAGGAAGTGA
*
109911187 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
109911250 CCAGTTAT
65 CCAGTTAT
** * *
109911258 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
109911323 CAGTTAT
66 CAGTTAT
109911330 A
1 A
109911331 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:109911556 original size:31 final size:31
Alignment explanation
Indices: 109911521--109911615 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
109911511 CGTTTACAGT
109911521 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
109911552 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
109911583 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
109911614 AA
1 AA
109911616 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:109914379 original size:27 final size:27
Alignment explanation
Indices: 109914340--109914467 Score: 100
Period size: 27 Copynumber: 4.7 Consensus size: 27
109914330 TTAGAATACT
*
109914340 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACCGAAATACCC
* *
109914368 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACCGAAATACCC
* *
109914395 -TCGATTTGTAAATTTACCGAAATA-CC
1 TTAG-TTTGTAAAATTACCGAAATACCC
* *
109914421 TTCGACTTGTAAAATTACC-AAAGTACCC
1 TTAG-TTTGTAAAATTACCGAAA-TACCC
* * * *
109914449 TCAATTTATAGAATTACCG
1 TTAGTTTGTAAAATTACCG
109914468 TTTTACCCCT
Statistics
Matches: 80, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
26 7 0.09
27 63 0.79
28 10 0.12
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCGAAATACCC
Found at i:109914448 original size:54 final size:54
Alignment explanation
Indices: 109914349--109914467 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 54
109914339 TTTAGTTTAC
* * *
109914349 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
* * * *
109914403 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTTA
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTTG
*
109914457 TAGAATTACCG
1 TAAAATTACCG
109914468 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 8 0.15
54 46 0.85
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
Found at i:109914736 original size:27 final size:27
Alignment explanation
Indices: 109914444--109914735 Score: 331
Period size: 27 Copynumber: 10.9 Consensus size: 27
109914434 ATTACCAAAG
* * *
109914444 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
109914471 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
109914498 TACCCT-GATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
109914524 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109914551 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109914578 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109914605 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109914632 TACCCTCGATTTTCAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
109914659 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109914686 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109914713 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
109914736 AAAATACCCT
Statistics
Matches: 229, Mismatches: 29, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
26 25 0.11
27 203 0.89
28 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:109914743 original size:27 final size:27
Alignment explanation
Indices: 109914605--109914933 Score: 114
Period size: 27 Copynumber: 12.1 Consensus size: 27
109914595 ATTACTGTTT
* * ***
109914605 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* **
109914632 TACCCTCGATTTTCAAAATTATCGT--TT
1 TACCCTCGATTTACAAAATTA-C-TAAAA
* * * ***
109914659 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
109914686 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
109914713 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
109914740 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
109914767 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
109914794 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
109914821 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
109914848 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
109914875 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
109914904 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
109914931 TAC
1 TAC
109914934 TTTTAGTTTG
Statistics
Matches: 243, Mismatches: 44, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 211 0.87
28 8 0.03
29 20 0.08
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:109914771 original size:54 final size:54
Alignment explanation
Indices: 109914713--109914852 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
109914703 ATTACTATTT
* ** * *
109914713 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
* * *
109914767 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
109914821 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
109914853 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
Found at i:109914798 original size:81 final size:80
Alignment explanation
Indices: 109914713--109914965 Score: 201
Period size: 81 Copynumber: 3.1 Consensus size: 80
109914703 ATTACTATTT
*
109914713 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTT-CAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
109914778 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** *** *
109914794 TACCCTTGGCTTGT-GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GA
1 TACCCTT-GATT-TCAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGT
109914857 TT-TACAAAGTTA-CAGAAA
64 TTGTA-AAA-TTACCA-AAA
* ** ** ***
109914875 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACTTTTA
1 TACCCTTGA-TTTC--AAAATTACTA-AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTA
* *
109914939 GTTTGTAGATTTACCAAAA
62 GTTTGTAAAATTACCAAAA
*
109914958 CACCCTTG
1 TACCCTTG
109914966 TAGGATGAAA
Statistics
Matches: 131, Mismatches: 28, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
79 2 0.02
80 10 0.08
81 62 0.47
82 3 0.02
83 46 0.35
84 6 0.05
85 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
TACCCTTGATTTCAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTT
GTAAAATTACCAAAA
Found at i:109914875 original size:54 final size:52
Alignment explanation
Indices: 109914713--109914880 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 52
109914703 ATTACTATTT
* ** * * *
109914713 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTA-CAGAAA
* * * *
109914767 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTACAGAAA
*
109914821 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTT-CAAA-TTACAGAAA
109914875 TACCCT
1 TACCCT
109914881 TGACTTTCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 86 0.90
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTCAAATTACAGAAA
Found at i:109915054 original size:27 final size:26
Alignment explanation
Indices: 109915004--109915086 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
109914994 TAGGTAAAAA
109915004 GACCGTAAAGCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTGTAGGGTAAAGT
*
109915030 GATCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
* * *
109915057 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
109915084 GAC
1 GAC
109915087 GAATATGCCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.24
27 34 0.68
28 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:109916383 original size:20 final size:20
Alignment explanation
Indices: 109916323--109916383 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
109916313 ATAAATATGG
*
109916323 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
109916343 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
109916363 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
109916383 T
1 T
109916384 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:109916477 original size:23 final size:24
Alignment explanation
Indices: 109916433--109916574 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
109916423 GAGGAAGTGA
109916433 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
109916457 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
109916480 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
109916503 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
109916527 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
109916551 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
109916575 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 52 0.48
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:109916502 original size:47 final size:47
Alignment explanation
Indices: 109916433--109916574 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
109916423 GAGGAAGTGA
109916433 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
109916480 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
109916527 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
109916575 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 13 0.15
47 52 0.60
48 11 0.13
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:109916801 original size:31 final size:31
Alignment explanation
Indices: 109916766--109916860 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
109916756 CGTTTACAGT
109916766 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
109916797 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
109916828 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
109916859 AA
1 AA
109916861 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:109919586 original size:28 final size:26
Alignment explanation
Indices: 109919538--109919653 Score: 85
Period size: 27 Copynumber: 4.3 Consensus size: 26
109919528 CCCTGTTTAG
* *
109919538 AATACTCTTAGTTTACTAAAATTATCGA
1 AATACCCTTAGTTT-GTAAAATTA-CGA
*
109919566 AATACCCTTAGTTTGTAAAAATACTGA
1 AATACCCTTAGTTTGTAAAATTAC-GA
*
109919593 AATACCC-TCGATTTGT-AAATTACCGA
1 AATACCCTTAG-TTTGTAAAATTA-CGA
* * *
109919619 AATA-CCTTCGACTTGTAAAATTACCA
1 AATACCCTTAG-TTTGTAAAATTACGA
109919645 AAGTACCCT
1 AA-TACCCT
109919654 CAATTTACAG
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
25 2 0.03
26 26 0.35
27 30 0.41
28 16 0.22
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (26 bp):
AATACCCTTAGTTTGTAAAATTACGA
Found at i:109919629 original size:26 final size:27
Alignment explanation
Indices: 109919554--109919651 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
109919544 CTTAGTTTAC
* *
109919554 TAAAATTATCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATA-CCTTCGATTTG
* * *
109919581 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTCGATTTG
*
109919608 T-AAATTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTCGATTTG
109919634 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
109919652 CTCAATTTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
26 29 0.49
27 30 0.51
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTCGATTTG
Found at i:109919652 original size:53 final size:53
Alignment explanation
Indices: 109919556--109919659 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 53
109919546 TAGTTTACTA
* * * *
109919556 AAATTATCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTGT
* *
109919609 AAATTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTT
1 AAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTT
109919660 ACAGAATTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
52 8 0.19
53 35 0.81
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTGT
Found at i:109919705 original size:53 final size:53
Alignment explanation
Indices: 109919648--109919935 Score: 307
Period size: 53 Copynumber: 5.4 Consensus size: 53
109919638 ATTACCAAAG
* * * * *
109919648 TACCCTCAATTTACAGAATTACCGTTTTACCCTAATTTACATAAATACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTGATTTACAGAATTACCGTTT
* *
109919701 TACCC-CTGATTTACATAATTA-TCGTTTTACCCTCGA-CTACAGAATTACCG-TT
1 TACCCTC-GATTTACAGAATTACT-GTTTTACCCT-GATTTACAGAATTACCGTTT
* * * *
109919753 TACCCTCGATTTACTGAATTACTGTTTTACCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTGATTTACAGAATTACCGTTT
* * * *
109919806 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTTCA-AATTATCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCT-GATTTACAGAATTACCGTTT
* * * **
109919859 TACCGTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCC-TGATTTACAGAATTACCGTTT
*
109919913 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
109919936 AAAATACCCT
Statistics
Matches: 194, Mismatches: 31, Indels: 19
0.80 0.13 0.08
Matches are distributed among these distances:
51 2 0.01
52 40 0.21
53 116 0.60
54 36 0.19
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (53 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTGATTTACAGAATTACCGTTT
Found at i:109919936 original size:27 final size:27
Alignment explanation
Indices: 109919648--109919935 Score: 304
Period size: 27 Copynumber: 10.9 Consensus size: 27
109919638 ATTACCAAAG
* *
109919648 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
109919675 TACCCT-AATTTACATAAATACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109919701 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
109919728 TACCCTCGA-CTACAGAATTACCG-TT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109919753 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109919780 TA-CCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109919806 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109919833 TACCCTCGATTTTCA-AATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
109919859 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
109919886 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
109919913 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
109919936 AAAATACCCT
Statistics
Matches: 222, Mismatches: 28, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
25 12 0.05
26 87 0.39
27 121 0.55
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:109919943 original size:27 final size:27
Alignment explanation
Indices: 109919859--109920133 Score: 110
Period size: 27 Copynumber: 10.1 Consensus size: 27
109919849 ATTATCGTTT
* * * ***
109919859 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
109919886 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
109919913 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
109919940 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
109919967 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
109919994 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
109920021 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
109920048 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
109920075 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
109920104 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
109920131 TAC
1 TAC
109920134 TTTTAGTTTG
Statistics
Matches: 200, Mismatches: 37, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
26 2 0.01
27 172 0.86
28 7 0.04
29 19 0.09
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Done.