Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 358 of 770
Found at i:109919971 original size:54 final size:54
Alignment explanation
Indices: 109919913--109920052 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
109919903 ATTACTATTT
* ** * *
109919913 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
* * *
109919967 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
109920021 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
109920053 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
Found at i:109919999 original size:81 final size:80
Alignment explanation
Indices: 109919913--109920165 Score: 201
Period size: 81 Copynumber: 3.1 Consensus size: 80
109919903 ATTACTATTT
*
109919913 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTT-CAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
109919978 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** *** *
109919994 TACCCTTGGCTTGT-GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GA
1 TACCCTT-GATT-TCAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGT
109920057 TT-TACAAAGTTA-CAGAAA
64 TTGTA-AAA-TTACCA-AAA
* ** ** ***
109920075 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACTTTTA
1 TACCCTTGA-TTTC--AAAATTACTA-AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTA
* *
109920139 GTTTGTAGATTTACCAAAA
62 GTTTGTAAAATTACCAAAA
*
109920158 CACCCTTG
1 TACCCTTG
109920166 TAGGATGAAA
Statistics
Matches: 131, Mismatches: 28, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
79 2 0.02
80 10 0.08
81 62 0.47
82 3 0.02
83 46 0.35
84 6 0.05
85 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
TACCCTTGATTTCAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTT
GTAAAATTACCAAAA
Found at i:109920075 original size:54 final size:52
Alignment explanation
Indices: 109919913--109920080 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 52
109919903 ATTACTATTT
* ** * * *
109919913 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTA-CAGAAA
* * * *
109919967 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTACAGAAA
*
109920021 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTT-CAAA-TTACAGAAA
109920075 TACCCT
1 TACCCT
109920081 TGACTTTCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 86 0.90
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTCAAATTACAGAAA
Found at i:109920254 original size:27 final size:26
Alignment explanation
Indices: 109920204--109920286 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
109920194 TAGGTAAAAA
109920204 GACCGTAAAGCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTGTAGGGTAAAGT
*
109920230 GATCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
* * *
109920257 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
109920284 GAC
1 GAC
109920287 GAATATGCCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.24
27 34 0.68
28 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:109923063 original size:40 final size:40
Alignment explanation
Indices: 109922978--109923128 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
109922968 AATTGAATGA
* * * **
109922978 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
109923018 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
109923059 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
109923098 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
109923129 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:109923142 original size:40 final size:40
Alignment explanation
Indices: 109923015--109923144 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
109923005 ATGCTGGAAA
* * *
109923015 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
109923055 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
109923095 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
109923135 TTATATCCGG
1 TTATATCCGG
109923145 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:109931005 original size:123 final size:120
Alignment explanation
Indices: 109930788--109931006 Score: 280
Period size: 123 Copynumber: 1.8 Consensus size: 120
109930778 AATTATGTGG
* * * *
109930788 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATCCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
* * * **
109930853 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
109930908 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATAT-CCG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAAT-A-ATCCCG
*
109930971 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
61 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
109931007 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
120 15 0.18
122 29 0.35
123 37 0.45
124 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:109931050 original size:40 final size:40
Alignment explanation
Indices: 109930965--109931115 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
109930955 AATTGAATGA
* * * *
109930965 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
109931005 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
109931046 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
109931085 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
109931116 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:109931129 original size:40 final size:40
Alignment explanation
Indices: 109931002--109931131 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
109930992 ATGCTGGAAA
* * *
109931002 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
109931042 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
109931082 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
109931122 TTATATCCGG
1 TTATATCCGG
109931132 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:109931130 original size:80 final size:80
Alignment explanation
Indices: 109930964--109931131 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
109930954 AAATTGAATG
* *
109930964 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
109931029 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
109931044 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
109931107 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
109931124 ATATCCGG
1 ATATCCGG
109931132 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:109933572 original size:55 final size:55
Alignment explanation
Indices: 109933459--109933573 Score: 124
Period size: 55 Copynumber: 2.1 Consensus size: 55
109933449 CAAAGTTGTA
* *
109933459 CACGGGTAGGCCACACGGGCGTACACCATGGCCATGTTAAAAAGACAGTGTCGTC
1 CACGGGTAGGCCACACGGGCGTACACCATGGCCATGTTAAAAAGACAGTATCGCC
* ** * * * * *
109933514 CACGGGTAGG-CAGCACGGGTGTGTACCATGGCCTTGTTGATAAGTCAGTATTGCC
1 CACGGGTAGGCCA-CACGGGCGTACACCATGGCCATGTTAAAAAGACAGTATCGCC
109933569 CACGG
1 CACGG
109933574 CTGAAGGGCA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
54 2 0.04
55 47 0.96
ACGTcount: A:0.23, C:0.25, G:0.31, T:0.20
Consensus pattern (55 bp):
CACGGGTAGGCCACACGGGCGTACACCATGGCCATGTTAAAAAGACAGTATCGCC
Found at i:109938087 original size:48 final size:48
Alignment explanation
Indices: 109938018--109938462 Score: 773
Period size: 48 Copynumber: 9.3 Consensus size: 48
109938008 AGATAAATAT
* *
109938018 ATATGTATGTGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
109938066 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
109938114 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
109938162 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
109938210 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
109938258 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
109938306 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
109938354 ATATATATGAGATATGTATATGGGGTAAAGCCGAATGACTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
109938402 ATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
109938450 ATATGTAGGAGAT
1 ATATGTATGAGAT
109938463 GTGTGTATAT
Statistics
Matches: 382, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 382 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:109938653 original size:37 final size:37
Alignment explanation
Indices: 109938603--109938702 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
109938593 GGAAATATAT
109938603 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
109938640 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
109938677 TCCGGGTAAGACCCGATAACTACGTG
1 TCCGGGTAAGACCCGATGACTACGTG
109938703 CGGGGACTAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:109953461 original size:46 final size:46
Alignment explanation
Indices: 109953405--109953580 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
109953395 TGGTTGAGCA
*
109953405 TCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAAG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAAG
* * *** * *
109953451 TCCGAACTCGTTGAGTTGAGCCCGAGTTCGAGAGATGTAACTAG-G-CA-
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GCGAAAG
* *
109953498 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAAG
* *
109953544 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
109953581 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 67 0.63
47 30 0.28
48 2 0.02
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAAG
Found at i:109953561 original size:93 final size:93
Alignment explanation
Indices: 109953402--109953572 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
109953392 GGATGGTTGA
*
109953402 GCATCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAAGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
109953467 TGAGCCCGAGTTCGAGAGATGTAACTAG
66 TGAGCCCGAGTTCGAGAGATGTAACTAG
* * * *
109953495 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
* *
109953560 TGAGTCTGAGTTC
66 TGAGCCCGAGTTC
109953573 ACTTATGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCGGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGAGAGATGTAACTAG
Found at i:109958933 original size:46 final size:45
Alignment explanation
Indices: 109958883--109959058 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
109958873 TGGTTGAGCA
109958883 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
*** * *
109958928 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAT
* * * *
109958977 T-CGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
* *
109959021 ACTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
109959059 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 67 0.63
47 29 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:109959048 original size:93 final size:93
Alignment explanation
Indices: 109958880--109959050 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
109958870 GGATGGTTGA
* * **
109958880 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAAACTCCGAACTCGTTGAGT
109958945 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
109958973 GCATTCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACT-CGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAA-ACTCCGAACTCGTTGAG
109959037 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
109959051 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAAACTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:109972258 original size:30 final size:30
Alignment explanation
Indices: 109972222--109972282 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
109972212 ACATAACAAG
109972222 AAGGAACAATATGCCATTGACGAATATTTT
1 AAGGAACAATATGCCATTGACGAATATTTT
109972252 AAGGAACAATATGCCATTGACGAATATTTT
1 AAGGAACAATATGCCATTGACGAATATTTT
109972282 A
1 A
109972283 GAGATAGAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (30 bp):
AAGGAACAATATGCCATTGACGAATATTTT
Found at i:109973160 original size:27 final size:27
Alignment explanation
Indices: 109973130--109973280 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
109973120 TGCAGGGTAG
* **
109973130 AATTACCAAAATACCTTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
109973157 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
109973184 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* ** *
109973211 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
* **
109973238 AATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
109973265 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
109973281 CTGATTTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:109973295 original size:27 final size:27
Alignment explanation
Indices: 109973130--109973337 Score: 159
Period size: 27 Copynumber: 7.7 Consensus size: 27
109973120 TGCAGGGTAG
** *
109973130 AATTACCAAAATACCTTTGGTTTACAA
1 AATTACCAAAATACCCCTGATTTACAA
* **
109973157 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTACAA
* * **
109973184 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTACAA
* ***
109973211 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTGATTTACAA
* **
109973238 AATTACCAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTACAA
* *
109973265 AATTACCAAAGTACCCCTGATTTACAG
1 AATTACCAAAATACCCCTGATTTACAA
****
109973292 AATTACCGTTTTA-CCCTCGATTTACAA
1 AATTACCAAAATACCCCT-GATTTACAA
**
109973319 AATTATTAAAATACCCCTG
1 AATTACCAAAATACCCCTG
109973338 TAGGGTAGAA
Statistics
Matches: 149, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 8 0.05
27 133 0.89
28 8 0.05
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTACAA
Found at i:109973349 original size:27 final size:27
Alignment explanation
Indices: 109973327--109973594 Score: 302
Period size: 27 Copynumber: 9.9 Consensus size: 27
109973317 AAAATTATTA
*
109973327 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
109973354 AAATATCCCTATAAGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
*
109973381 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
109973408 AAATACTCCTGTAGGGTAGAGTTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
109973435 AAATACCTCTGTAGGGTAAAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
109973462 AAATACCCCTGTAGGGTAGAAGTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* **
109973489 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
109973516 AAATACCCTTGTAGGGTAAAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
109973543 AAATACTCCTGTAAGGTAGAATAACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
109973570 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
109973595 CATTTTGCCC
Statistics
Matches: 201, Mismatches: 40, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 201 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:109974035 original size:22 final size:22
Alignment explanation
Indices: 109973983--109974047 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
109973973 GCCAATTATT
* *
109973983 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTATGTGCCAAC
* *
109974005 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
*
109974027 CTGATTATGGCTATATGCCAA
1 CTGATTATGGCTATGTGCCAA
109974048 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:109974436 original size:25 final size:25
Alignment explanation
Indices: 109974389--109974437 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
109974379 TTTGATTTTG
* * *
109974389 ATTCTGTTACCTGATACTGATTCTA
1 ATTCTGTCACCTAATACTAATTCTA
*
109974414 ATTCTGTCACCTAATTCTAATTCT
1 ATTCTGTCACCTAATACTAATTCT
109974438 GATTTTGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.45
Consensus pattern (25 bp):
ATTCTGTCACCTAATACTAATTCTA
Found at i:109974440 original size:37 final size:37
Alignment explanation
Indices: 109974399--109974477 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
109974389 ATTCTGTTAC
*
109974399 CTGATACTGATTCTAATTCTGTCACCTAATTCTAATT
1 CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
** * * *
109974436 CTGATTTTGATTATGATTCTGTCACCTGATTCTGATT
1 CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
109974473 CTGAT
1 CTGAT
109974478 TGTCATTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.46
Consensus pattern (37 bp):
CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
Found at i:109974471 original size:19 final size:19
Alignment explanation
Indices: 109974405--109974475 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
109974395 TTACCTGATA
109974405 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
* *
109974424 CTAATTCTAATTCTG--ATT
1 CTGATTCTAATTCTGTCA-C
* * *
109974442 TTGATTATGATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
109974461 CTGATTCTGATTCTG
1 CTGATTCTAATTCTG
109974476 ATTGTCATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
17 1 0.03
18 11 0.28
19 27 0.68
20 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:109974478 original size:37 final size:37
Alignment explanation
Indices: 109974414--109974492 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
109974404 ACTGATTCTA
* *
109974414 ATTCTGTCACCTAATTCTAATTCTGATTTTGATTATG
1 ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
* * *
109974451 ATTCTGTCACCTGATTCTGATTCTGATTGTCATTTTG
1 ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
109974488 ATTCT
1 ATTCT
109974493 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (37 bp):
ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
Found at i:109976582 original size:48 final size:49
Alignment explanation
Indices: 109976509--109976621 Score: 194
Period size: 48 Copynumber: 2.3 Consensus size: 49
109976499 GTCATTAGGG
*
109976509 GATACATTGAGTTGGC-TTCAGGCCATGATATTGGCACTTCGAGTGCGA
1 GATACATTGAGTTGGCTTTCAGGCCATGATATTGCCACTTCGAGTGCGA
*
109976557 GATACATTGAGTTGGCTTTGA-GCCATGATATTGCCACTTCGAGTGCGA
1 GATACATTGAGTTGGCTTTCAGGCCATGATATTGCCACTTCGAGTGCGA
109976605 GATACATTGAGTTGGCT
1 GATACATTGAGTTGGCT
109976622 ACCCCGTGGT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
48 59 0.95
49 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (49 bp):
GATACATTGAGTTGGCTTTCAGGCCATGATATTGCCACTTCGAGTGCGA
Found at i:109978324 original size:74 final size:74
Alignment explanation
Indices: 109978192--109978339 Score: 244
Period size: 74 Copynumber: 2.0 Consensus size: 74
109978182 ATAAGTAATA
*
109978192 TGTGACAGCCCAAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACTGAGTCATAAAA
1 TGTGACAGCCCAAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCATAAAA
109978257 ATAATTAAC
66 ATAATTAAC
* * *
109978266 TGTGACAGCCCTAAAT-TGACCCTAGTCGGAAAGTGGTTTTGGGACCGCTAAACCGAGTCATAAA
1 TGTGACAGCCC-AAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCATAAA
109978330 AATAATTAAC
65 AATAATTAAC
109978340 CGTCATAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
74 65 0.94
75 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (74 bp):
TGTGACAGCCCAAATGTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCATAAAA
ATAATTAAC
Found at i:109981367 original size:29 final size:29
Alignment explanation
Indices: 109981334--109981464 Score: 192
Period size: 29 Copynumber: 4.5 Consensus size: 29
109981324 GTGACGAGAT
*
109981334 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
109981363 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109981392 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ***
109981421 TGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
109981450 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
109981465 GAGCTCGAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:109981465 original size:29 final size:29
Alignment explanation
Indices: 109981390--109981524 Score: 146
Period size: 29 Copynumber: 4.7 Consensus size: 29
109981380 GCTGGAAATA
* ***
109981390 TATGGCACTAAGTGTGC-ATGCTGGAAATA
1 TATGGCACTAAGTGTGCGA-GCTCGAAGGG
109981419 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCGAAGGG
109981448 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCGAAGGG
** * ** **
109981477 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCGAAGGG
*
109981506 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
109981525 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCGAAGGG
Found at i:109981481 original size:58 final size:59
Alignment explanation
Indices: 109981334--109981524 Score: 167
Period size: 58 Copynumber: 3.3 Consensus size: 59
109981324 GTGACGAGAT
* * * * **
109981334 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAAA-TATA
1 TGGCACTAAGTGTGCGATGCTCGAAAGATATGGCACTAAGTGTGCGA-GCT-CAAAGCGTA
* * * *
109981392 TGGCACTAAGTGTGC-ATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGATGCTCGAAAGATATGGCACTAAGTGTGCGAGCTCAAAGCGTA
* * ** * * * *
109981450 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAGATATGGCACTAAGTGTGCGAGCTCAAAGCGTA
109981508 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
109981525 AATCGAGTAT
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
57 2 0.02
58 108 0.96
59 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAGATATGGCACTAAGTGTGCGAGCTCAAAGCGTA
Found at i:109989372 original size:29 final size:29
Alignment explanation
Indices: 109989339--109989440 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
109989329 GTGACGAGAT
*
109989339 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
109989368 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109989397 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
109989426 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
109989441 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:109989456 original size:29 final size:29
Alignment explanation
Indices: 109989339--109989500 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
109989329 GTGACGAGAT
* **
109989339 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
109989368 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
109989397 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
109989426 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
109989455 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
109989484 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
109989501 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:109989469 original size:58 final size:59
Alignment explanation
Indices: 109989335--109989461 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
109989325 TACGGTGACG
* * *
109989335 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
109989392 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
109989450 GGGTATGGCACT
1 AGATATGGCACT
109989462 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:109990970 original size:29 final size:30
Alignment explanation
Indices: 109990937--109991014 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
109990927 GGGTGTTACA
* *
109990937 CACTAAGTGTGCG-GGCTTGAAA-TGCATGG
1 CACTAAGTGTGCGTAG-TTGAAAGTACATGG
*
109990966 CACTAAGTGTG-GTAGTTTAAAGTACATGG
1 CACTAAGTGTGCGTAGTTGAAAGTACATGG
*
109990995 CACTAAGTGTGCGTGGTTGA
1 CACTAAGTGTGCGTAGTTGA
109991015 TTATTAAGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.15
29 29 0.71
30 6 0.15
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (30 bp):
CACTAAGTGTGCGTAGTTGAAAGTACATGG
Found at i:109998412 original size:93 final size:93
Alignment explanation
Indices: 109998300--109998471 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
109998290 GCCCATAAGT
* *
109998300 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109998365 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
109998393 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109998458 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
109998472 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:109998467 original size:46 final size:46
Alignment explanation
Indices: 109998292--109998467 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
109998282 TGTAACCCGC
* * *
109998292 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
109998338 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
109998388 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
109998431 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
109998468 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:110000892 original size:30 final size:30
Alignment explanation
Indices: 110000848--110000936 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
110000838 CAAAGATAAC
110000848 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
110000877 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
110000907 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
110000937 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:110000896 original size:15 final size:15
Alignment explanation
Indices: 110000848--110000927 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
110000838 CAAAGATAAC
*
110000848 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
110000862 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
110000877 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
110000892 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
110000907 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
110000922 AAGAAA
1 AAGAAA
110000928 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:110000936 original size:15 final size:15
Alignment explanation
Indices: 110000859--110000936 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
110000849 AGAAAACCGA
110000859 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
110000874 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
110000888 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
110000903 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
110000919 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
110000934 ATA
1 ATA
110000937 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:110003554 original size:93 final size:93
Alignment explanation
Indices: 110003442--110003613 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
110003432 GCCCATAAGT
* *
110003442 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
110003507 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
110003535 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
110003600 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
110003614 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:110003609 original size:46 final size:46
Alignment explanation
Indices: 110003434--110003609 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
110003424 TGTAACCCGC
* * *
110003434 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
110003480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
110003530 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
110003573 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
110003610 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:110009013 original size:30 final size:30
Alignment explanation
Indices: 110008979--110009039 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
110008969 CCCTTAACTC
110008979 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
110009009 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
110009039 A
1 A
110009040 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:110014790 original size:30 final size:28
Alignment explanation
Indices: 110014756--110014815 Score: 93
Period size: 30 Copynumber: 2.1 Consensus size: 28
110014746 GCATAGTATC
*
110014756 GTATCTTGGGTTTCTTTATTCTGGATTTCT
1 GTATCTTGGATTTCTTTATTC-GG-TTTCT
110014786 GTATCTTGGATTTCTTTATTCGGTTTCT
1 GTATCTTGGATTTCTTTATTCGGTTTCT
110014814 GT
1 GT
110014816 GACACCCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 7 0.24
29 2 0.07
30 20 0.69
ACGTcount: A:0.10, C:0.13, G:0.20, T:0.57
Consensus pattern (28 bp):
GTATCTTGGATTTCTTTATTCGGTTTCT
Found at i:110014795 original size:15 final size:15
Alignment explanation
Indices: 110014756--110014800 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
110014746 GCATAGTATC
*
110014756 GTATCTTGGGTTTCT
1 GTATCTTGGATTTCT
*
110014771 TTAT-TCTGGATTTCT
1 GTATCT-TGGATTTCT
110014786 GTATCTTGGATTTCT
1 GTATCTTGGATTTCT
110014801 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.13, G:0.20, T:0.56
Consensus pattern (15 bp):
GTATCTTGGATTTCT
Found at i:110016991 original size:48 final size:48
Alignment explanation
Indices: 110016923--110017106 Score: 323
Period size: 48 Copynumber: 3.8 Consensus size: 48
110016913 GATAAATAAG
*
110016923 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTGATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
110016971 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
110017019 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
110017067 TATATGTGTGATATGTATATATGTGATAAAGCCTAATGGC
1 TATATGTGTGATATG--TATATGTGGTAAAGCCGAATGGC
110017107 CCGTGTGATG
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
48 110 0.84
50 21 0.16
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.34
Consensus pattern (48 bp):
TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:110017122 original size:48 final size:47
Alignment explanation
Indices: 110016926--110017263 Score: 241
Period size: 47 Copynumber: 7.1 Consensus size: 47
110016916 AAATAAGTAT
* **
110016926 ATGTGTGATATG-TATATGTGGTAAAGCCGAATGGCTGATGTGAAAT-A
1 ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTG--ATGA
* *
110016973 TATGTGTGATATG-TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-A
1 -ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTG--ATGA
* *
110017021 TATGTGTGATATG-TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-A
1 -ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTG--ATGA
* **
110017069 TATGTGTGATATGTATATATGTGATAAAGCCTAATGGCCCGTGTGATGA
1 -ATGTGTGATATG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
* * * *
110017118 A--TGTGAAAGTGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGA
1 ATGTGTGATA-TG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
* * * * *
110017165 A--CGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGTGATA-TG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
* * * *
110017212 A--TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGG
1 ATGTGTGATA-TG-ATATATGTGATAAAGCCGAATGGCCAATGTGATGA
110017259 ATGTG
1 ATGTG
110017264 AAAGTGTATA
Statistics
Matches: 259, Mismatches: 25, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
46 6 0.02
47 115 0.44
48 110 0.42
49 3 0.01
50 25 0.10
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
ATGTGTGATATGATATATGTGATAAAGCCGAATGGCCAATGTGATGA
Found at i:110017122 original size:96 final size:96
Alignment explanation
Indices: 110016926--110017216 Score: 298
Period size: 96 Copynumber: 3.1 Consensus size: 96
110016916 AAATAAGTAT
*
110016926 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTGATGTGAAATATATGTGTGATATG--TAT
1 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
* * ***
110016989 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT-A
66 ATGTGATAAAGCCTAATGGCCCGTGTG--ATGA
110017021 TATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
1 -ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
110017086 TATGTGATAAAGCCTAATGGCCCGTGTGATGA
65 TATGTGATAAAGCCTAATGGCCCGTGTGATGA
* * * * * * *
110017118 A--TGTGAAAGTGCATATGTGTGATAAGGCTGAATGGCCAATGTG--ATGA-A--CGTGAAAGTG
1 ATGTGTGATA-TGTATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAT-ATATGTGTGATA-TG
*
110017176 TATATATGTGATAAGGCCTAATGG-CCGATGTGATGA
61 TATATATGTGATAAAGCCTAATGGCCCG-TGTGATGA
110017212 ATGTG
1 ATGTG
110017217 AAAGTGTATA
Statistics
Matches: 170, Mismatches: 14, Indels: 22
0.83 0.07 0.11
Matches are distributed among these distances:
93 8 0.05
94 40 0.24
95 12 0.07
96 66 0.39
97 19 0.11
98 25 0.15
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (96 bp):
ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATAT
ATGTGATAAAGCCTAATGGCCCGTGTGATGA
Found at i:110017152 original size:47 final size:46
Alignment explanation
Indices: 110017080--110017284 Score: 275
Period size: 47 Copynumber: 4.4 Consensus size: 46
110017070 ATGTGTGATA
* **
110017080 TGTATATATGTGATAAAGCCTAATGGCCCGTGTGATGAATGTGAAAG
1 TGTATATATGTGAT-AAGGCTAATGGCCAATGTGATGAATGTGAAAG
* * *
110017127 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGAACGTGAAAG
1 TGTATATATGTGATAAGGCT-AATGGCCAATGTGATGAATGTGAAAG
*
110017174 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGG-CTAATGGCCAATGTGATGAATGTGAAAG
* * *
110017221 TGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGG-CTAATGGCCAATGTGATGAATGTGAAAG
*
110017268 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
110017285 TCCCGAAGGG
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 5 0.04
47 134 0.95
48 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (46 bp):
TGTATATATGTGATAAGGCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:110017284 original size:94 final size:94
Alignment explanation
Indices: 110017080--110017284 Score: 322
Period size: 94 Copynumber: 2.2 Consensus size: 94
110017070 ATGTGTGATA
* *
110017080 TGTATATATGTGATAAAGCCTAATGGCCCGTGTGATGAATGTGAAAGTGCATATGTGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATGGCCCGTGTGATGAATGTGAAAGTGCATATATGTGATAAGG
*
110017145 CTGAATGGCCAATGTGATGAACGTGAAAG
66 CCGAATGGCCAATGTGATGAACGTGAAAG
*
110017174 TGTATATATGTGATAAGGCCTAATGG-CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 TGTATATATGTGATAAGGCCTAATGGCCCG-TGTGATGAATGTGAAAGTGCATATATGTGATAAG
* * *
110017238 GCCGAGTGGCCAATGTGATGGATGTGAAAG
65 GCCGAATGGCCAATGTGATGAACGTGAAAG
*
110017268 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
110017285 TCCCGAAGGG
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
93 3 0.03
94 99 0.97
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TGTATATATGTGATAAGGCCTAATGGCCCGTGTGATGAATGTGAAAGTGCATATATGTGATAAGG
CCGAATGGCCAATGTGATGAACGTGAAAG
Found at i:110019692 original size:40 final size:40
Alignment explanation
Indices: 110019629--110019829 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
110019619 AAGTCTCGAC
*
110019629 GATG-ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
110019668 GATGTATTCGGGCTAGGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
110019708 GATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
110019748 GATGTATCCGTGCTAAGTTCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* ** * *
110019788 GATGTATCCGTGCTAAACCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
110019828 GA
1 GA
110019830 CGTGTATTCG
Statistics
Matches: 145, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 4 0.03
40 141 0.97
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:110023115 original size:50 final size:48
Alignment explanation
Indices: 110022972--110023107 Score: 200
Period size: 48 Copynumber: 2.8 Consensus size: 48
110022962 GATAAATAAG
* * *
110022972 TATAGGTGTGATATGTATATGTGGTAACGCCGAATGGCTGATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
110023020 TATCTGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
110023068 TATATGTGTGATATGTATATATGTGATAAAGCCTAATGGC
1 TATATGTGTGATATG--TATATGTGGTAAAGCCGAATGGC
110023108 CCATGTGATG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 58 0.73
50 21 0.27
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (48 bp):
TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:110023153 original size:47 final size:47
Alignment explanation
Indices: 110023081--110023285 Score: 302
Period size: 47 Copynumber: 4.4 Consensus size: 47
110023071 ATGTGTGATA
* * *
110023081 TGTATATATGTGATAAAGCCTAATGGCCCATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * *
110023128 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * *
110023175 TGTATATATGTGATAAGGCCAAATGGCCGATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
110023222 TGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
110023269 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
110023286 TCCCGAAGGG
Statistics
Matches: 142, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
Found at i:110027338 original size:46 final size:45
Alignment explanation
Indices: 110027285--110027457 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
110027275 TTGGGCATCT
*
110027285 GAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
* *** * *
110027331 GAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCC
*
110027378 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCC
* *
110027423 TGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
110027458 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 61 0.59
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCC
Found at i:110027437 original size:93 final size:93
Alignment explanation
Indices: 110027278--110027449 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
110027268 GGGATATTTG
* *
110027278 GGCATCTGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
110027343 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
110027371 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTTGTTGA
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
110027435 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
110027450 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:110032018 original size:40 final size:40
Alignment explanation
Indices: 110031963--110032107 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
110031953 AATGATACCC
* * * *
110031963 GGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCG
110032003 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
* *
110032043 GGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
* *
110032083 GGTTAAGACCCGAAGGCAATTGTGC
1 GGCTAAGACCCGAAGGCATTTGTGC
110032108 TTGTGGTTAT
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
40 95 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
Found at i:110032119 original size:80 final size:80
Alignment explanation
Indices: 110031966--110032123 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 80
110031956 GATACCCGGC
* * * * *
110031966 TAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
*
110032031 TTGCTATATCCGGGT
66 TGGCTATATCCGGGT
* * **
110032046 TAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTT
1 TAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGCAATTGTGCGA
*
110032110 GTGGTTATATCCGG
65 GTGGCTATATCCGG
110032124 CTAAATTCCG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 64 0.97
81 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAG
TGGCTATATCCGGGT
Found at i:110040082 original size:40 final size:39
Alignment explanation
Indices: 110040024--110040147 Score: 124
Period size: 40 Copynumber: 3.1 Consensus size: 39
110040014 TGATACCCGA
* * *
110040024 GCTAAGCCCCGAAAGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATATCCGG
* * *
110040064 GCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATATCCGG
* * * *
110040104 GTTAAGACCCGAAGGCAATTGCGCTTGTGGTTATATCC-G
1 GCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATATCCGG
110040143 GCTAA
1 GCTAA
110040148 ATTCCGAAGA
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
39 6 0.09
40 60 0.88
41 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
GCTAAGACCCGAAGGCATTTGTGCTAGTGTTATATCCGG
Found at i:110042540 original size:22 final size:22
Alignment explanation
Indices: 110042515--110042556 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
110042505 TCTGAAATTG
*
110042515 TTGATGAATTCGTGAGTTTTCA
1 TTGATGAATGCGTGAGTTTTCA
*
110042537 TTGATGAATGCTTGAGTTTT
1 TTGATGAATGCGTGAGTTTT
110042557 TGAATGTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48
Consensus pattern (22 bp):
TTGATGAATGCGTGAGTTTTCA
Found at i:110043021 original size:43 final size:43
Alignment explanation
Indices: 110042961--110043082 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 43
110042951 ATTGAGATGT
* * * *
110042961 GATTACATGTAAGACCATATCTGGGACATTGGCATTG-TATTAC
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
* *
110043004 GATTTCGTGTAGGACCATGTCTGGGACATTGGCATCGTTAATC
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
*
110043047 GATTTCATGTAAGACCTTGTCTGGGAC-TGTGGCATC
1 GATTTCATGTAAGACCATGTCTGGGACAT-TGGCATC
110043083 AATATGTAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 64 0.94
44 3 0.04
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
Found at i:110048298 original size:14 final size:15
Alignment explanation
Indices: 110048279--110048307 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
110048269 TATTTAACTA
110048279 GTTCTTAATT-TTGT
1 GTTCTTAATTCTTGT
110048293 GTTCTTAATTCTTGT
1 GTTCTTAATTCTTGT
110048308 TTTGATATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.10, G:0.14, T:0.62
Consensus pattern (15 bp):
GTTCTTAATTCTTGT
Found at i:110052055 original size:55 final size:55
Alignment explanation
Indices: 110051938--110052081 Score: 135
Period size: 55 Copynumber: 2.6 Consensus size: 55
110051928 TGCTATATGG
* * * * *
110051938 CCGTGGTCAAGCTTGCCAAAACAACACGGGTGTGCGACACGCCCGTGTGAAAGAA
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACACCCGTGTGAAACAA
* * ** * * *
110051993 CCATGGTCGAGCCTGCCAAAACAGCACGGGCGTTTGACATACCCGTGTGGAACAC
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACACCCGTGTGAAACAA
* ** **
110052048 CCGTGGTCGAACCTGTTAAATTAACACGGGCGTG
1 CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTG
110052082 GGGCTTGCAC
Statistics
Matches: 69, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.17
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACACCCGTGTGAAACAA
Found at i:110052140 original size:13 final size:13
Alignment explanation
Indices: 110052122--110052146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110052112 AATGAAGCTA
110052122 GACACGGTCGTGC
1 GACACGGTCGTGC
110052135 GACACGGTCGTG
1 GACACGGTCGTG
110052147 TGAACCTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
GACACGGTCGTGC
Found at i:110065251 original size:40 final size:40
Alignment explanation
Indices: 110065221--110065444 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 40
110065211 GCTACTCGTT
*
110065221 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
110065261 CAAATACCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
110065301 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
**
110065340 CAAATGCCTTC-GGATCTTAGTTCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCA
* * * *
110065380 CAAATGCCTTC-GGATCTTAGCCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
110065421 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
110065445 ACATCATTCG
Statistics
Matches: 156, Mismatches: 18, Indels: 20
0.80 0.09 0.10
Matches are distributed among these distances:
38 2 0.01
39 32 0.21
40 109 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:110065332 original size:79 final size:79
Alignment explanation
Indices: 110065221--110065445 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 79
110065211 GCTACTCGTT
* * * *
110065221 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
110065286 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* **
110065301 CCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
110065364 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * *
110065380 CAAATGCCTTCGGATCTTAGCCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
110065444 GA
64 GA
110065446 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 44 0.35
81 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:110068512 original size:18 final size:18
Alignment explanation
Indices: 110068483--110068517 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
110068473 ACATGGCTAA
110068483 TATCATAACTCA-AAACT
1 TATCATAACTCACAAACT
110068500 TATCATCAACTCACAAAC
1 TATCAT-AACTCACAAAC
110068518 CTATACATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.26
Consensus pattern (18 bp):
TATCATAACTCACAAACT
Found at i:110069004 original size:43 final size:43
Alignment explanation
Indices: 110068956--110069083 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 43
110068946 ATATAATGCC
* * * ** *
110068956 ATATCCCAGATATGGTCTTTCATGTTATCACATATCGATCCCA
1 ATATCCCAGACATGGTCTTACACGAAATCACATAACGATCCCA
*
110068999 ATATCCCAGACATGGTCTTACACGAAATCACATAACGATGCCA
1 ATATCCCAGACATGGTCTTACACGAAATCACATAACGATCCCA
* *
110069042 ATGTCCCAGACATGG--TTACACAAAATCACATAACGATGCCCA
1 ATATCCCAGACATGGTCTTACACGAAATCACATAACGAT-CCCA
110069084 TGTCCCAATA
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
41 21 0.28
42 3 0.04
43 50 0.68
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (43 bp):
ATATCCCAGACATGGTCTTACACGAAATCACATAACGATCCCA
Found at i:110069073 original size:41 final size:42
Alignment explanation
Indices: 110068982--110069090 Score: 157
Period size: 41 Copynumber: 2.6 Consensus size: 42
110068972 CTTTCATGTT
* * * *
110068982 ATCACATATCGATCCCAATATCCCAGACATGGTCTTACACGAA
1 ATCACATAACGATGCCAATGTCCCAGACATGG-CTTACACAAA
110069025 ATCACATAACGATGCCAATGTCCCAGACATGG-TTACACAAA
1 ATCACATAACGATGCCAATGTCCCAGACATGGCTTACACAAA
*
110069066 ATCACATAACGATGCCCATGTCCCA
1 ATCACATAACGATGCCAATGTCCCA
110069091 ATATGATGCC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 32 0.52
43 29 0.48
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.21
Consensus pattern (42 bp):
ATCACATAACGATGCCAATGTCCCAGACATGGCTTACACAAA
Found at i:110069664 original size:29 final size:26
Alignment explanation
Indices: 110069617--110069675 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
110069607 CCTTTCATTT
110069617 ATTTCACATTTAAACCCCTCAATTTGCAC
1 ATTTCACATTTAAACCCCT--ATTTG-AC
*
110069646 ATTTCACAATTT-AATCCCTATTTGAC
1 ATTTCAC-ATTTAAACCCCTATTTGAC
110069672 ATTT
1 ATTT
110069676 TTGTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 5 0.18
29 13 0.46
30 4 0.14
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (26 bp):
ATTTCACATTTAAACCCCTATTTGAC
Found at i:110076030 original size:46 final size:46
Alignment explanation
Indices: 110075963--110076134 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
110075953 AACCCGCCCC
* *
110075963 TAAGTGAATTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
110076009 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
110076057 TCA-CGAACTCGTACTCAACTCAACGAGTTCAGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
110076102 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
110076135 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 25 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:110076590 original size:30 final size:30
Alignment explanation
Indices: 110076556--110076615 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
110076546 ATTTAATACG
110076556 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
110076586 AACTTTTGCATAATTACGCTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
110076616 GGCTCAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:110081783 original size:37 final size:37
Alignment explanation
Indices: 110081728--110081803 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
110081718 AGTTTAATGT
*
110081728 GTTGAATTTATGACACAAATGAGTTGATGGCCTAGTG
1 GTTGAATTTATGACACAAATCAGTTGATGGCCTAGTG
*
110081765 GTTGGATTTATGACACAAATCAGTTGATGGCCTAGTG
1 GTTGAATTTATGACACAAATCAGTTGATGGCCTAGTG
110081802 GT
1 GT
110081804 GGTGGCGTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (37 bp):
GTTGAATTTATGACACAAATCAGTTGATGGCCTAGTG
Found at i:110082705 original size:2 final size:2
Alignment explanation
Indices: 110082698--110082735 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
110082688 GCTTCGCCAC
110082698 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
110082736 CTGTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:110088768 original size:29 final size:26
Alignment explanation
Indices: 110088721--110088779 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
110088711 CCTTTCATTT
110088721 ATTTCACATTTAAACCCCTCAATTTGCAC
1 ATTTCACATTTAAACCCCT--ATTTG-AC
*
110088750 ATTTCACAATTT-AATCCCTATTTGAC
1 ATTTCAC-ATTTAAACCCCTATTTGAC
110088776 ATTT
1 ATTT
110088780 TTGTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 5 0.18
29 13 0.46
30 4 0.14
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (26 bp):
ATTTCACATTTAAACCCCTATTTGAC
Found at i:110099461 original size:30 final size:30
Alignment explanation
Indices: 110099425--110099555 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
110099415 GACAAGATTG
* * * * *
110099425 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
110099455 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
110099483 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
110099513 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
110099542 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
110099556 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:110099516 original size:58 final size:58
Alignment explanation
Indices: 110099425--110099555 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
110099415 GACAAGATTG
* * * * * *
110099425 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
110099483 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
110099542 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
110099556 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:110108653 original size:63 final size:62
Alignment explanation
Indices: 110108585--110108704 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 62
110108575 CACGGGATGA
*
110108585 TAGACGGGTGTGTGTCCAGGCCTTGTAACTCACTGACTTTAGATTTAGATCACATAAATAAGC
1 TAGACGGGTGTGTGTCCAGGACTTGTAACTCACTGACTTTAGATTTAGATCAC-TAAATAAGC
* *
110108648 TAGACGGGTGTGTGTCTAGGACTTGTAACTCACTGACTTTGGATTTAGATCACTAAA
1 TAGACGGGTGTGTGTCCAGGACTTGTAACTCACTGACTTTAGATTTAGATCACTAAA
110108705 ATTCTTTTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
62 4 0.07
63 50 0.93
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (62 bp):
TAGACGGGTGTGTGTCCAGGACTTGTAACTCACTGACTTTAGATTTAGATCACTAAATAAGC
Found at i:110110856 original size:13 final size:13
Alignment explanation
Indices: 110110838--110110862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110110828 TAATGGTATA
110110838 TTGAATCCATGAT
1 TTGAATCCATGAT
110110851 TTGAATCCATGA
1 TTGAATCCATGA
110110863 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:110112430 original size:48 final size:48
Alignment explanation
Indices: 110112371--110112818 Score: 586
Period size: 48 Copynumber: 9.6 Consensus size: 48
110112361 AAAGTGTAAT
*
110112371 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGGA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
110112419 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACAAGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
110112467 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
110112515 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
110112563 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* ** * *
110112611 TATGTGGTAAAGCCGAAT-AC--ATGTGTGAT--ATGTAT-ATGTGGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT-GTA
* ** * * * * * *
110112654 -AAGCCG-AATGGCTAAT-G-TGAA-AT-ACAT--GTGTGT--TATGTA
1 TATGTGGTAAAGCCGAATGGCT-AATGTGAAATACATGTGTGATATGTA
110112693 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
110112741 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
110112789 TATGTAGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
110112819 TGTTGTAACA
Statistics
Matches: 351, Mismatches: 35, Indels: 28
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.01
40 5 0.01
41 20 0.06
42 10 0.03
43 11 0.03
44 3 0.01
45 7 0.02
46 5 0.01
47 1 0.00
48 286 0.81
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:110112630 original size:34 final size:34
Alignment explanation
Indices: 110112592--110112662 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
110112582 GCTAATGTGA
110112592 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
110112626 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
110112660 AAT
1 AAT
110112663 GGCTAATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (34 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:110112641 original size:82 final size:82
Alignment explanation
Indices: 110112544--110112806 Score: 355
Period size: 82 Copynumber: 3.0 Consensus size: 82
110112534 GCTAATGTGA
110112544 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
110112609 TATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCG
*
110112626 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
110112691 TATATGTGGTAAAGCCGAATGGCTAATG
66 TATATGTGGTAAAG-C------C----G
* *
110112719 TGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGAT
1 ---AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGAT
* *
110112784 ATGAATATGTAGTAAAGCCG
63 ATGTATATGTGGTAAAGCCG
110112804 AAT
1 AAT
110112807 GGCTAATGTG
Statistics
Matches: 161, Mismatches: 6, Indels: 28
0.83 0.03 0.14
Matches are distributed among these distances:
82 81 0.50
83 1 0.01
85 1 0.01
89 2 0.01
93 1 0.01
95 1 0.01
96 74 0.46
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (82 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCG
Found at i:110112646 original size:130 final size:130
Alignment explanation
Indices: 110112496--110112758 Score: 508
Period size: 130 Copynumber: 2.0 Consensus size: 130
110112486 GCTAATGTGA
110112496 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
110112561 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
*
110112626 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
110112691 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
110112756 AAT
1 AAT
110112759 GGCTAATGTG
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (130 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
Found at i:110112658 original size:178 final size:178
Alignment explanation
Indices: 110112448--110112806 Score: 664
Period size: 178 Copynumber: 2.0 Consensus size: 178
110112438 GCTAATGTGA
110112448 AATACAAGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACAAGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
110112513 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
* *
110112578 AATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
131 AATGGCTAATGTGAAATACATGTGTGATATGAATATGTAGTAAAGCCG
* *
110112626 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACAAGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
110112691 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
*
110112756 AATGGCTAATGTGAAATATATGTGTGATATGAATATGTAGTAAAGCCG
131 AATGGCTAATGTGAAATACATGTGTGATATGAATATGTAGTAAAGCCG
110112804 AAT
1 AAT
110112807 GGCTAATGTG
Statistics
Matches: 175, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
178 175 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.31
Consensus pattern (178 bp):
AATACAAGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
AATGGCTAATGTGAAATACATGTGTGATATGAATATGTAGTAAAGCCG
Found at i:110112720 original size:226 final size:226
Alignment explanation
Indices: 110112400--110112818 Score: 775
Period size: 226 Copynumber: 1.9 Consensus size: 226
110112390 GCTAATGTGA
110112400 AATACATGTGTGATATGGATATGTGGTAAAGCCGAATGGCTAATGTGAAATACAAGTGTGATATG
1 AATACATGTGTGATATGGATATGTGGTAAAGCCGAATGGCTAATGTGAAATACAAGTGTGATATG
*
110112465 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
* *
110112530 AATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
131 AATGGCTAATGTGAAATACATGTGTGATATGAATATGTAGTAAAGCCGAATGGCTAATGTGAAAT
110112595 ACATGTGTGATATGTATATGTGGTAAAGCCG
196 ACATGTGTGATATGTATATGTGGTAAAGCCG
* * *
110112626 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGGATATGTGGTAAAGCCGAATGGCTAATGTGAAATACAAGTGTGATATG
110112691 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
*
110112756 AATGGCTAATGTGAAATATATGTGTGATATGAATATGTAGTAAAGCCGAATGGCTAATGTGAA
131 AATGGCTAATGTGAAATACATGTGTGATATGAATATGTAGTAAAGCCGAATGGCTAATGTGAA
110112819 TGTTGTAACA
Statistics
Matches: 186, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
226 186 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (226 bp):
AATACATGTGTGATATGGATATGTGGTAAAGCCGAATGGCTAATGTGAAATACAAGTGTGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
AATGGCTAATGTGAAATACATGTGTGATATGAATATGTAGTAAAGCCGAATGGCTAATGTGAAAT
ACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:110112915 original size:37 final size:37
Alignment explanation
Indices: 110112865--110112948 Score: 159
Period size: 37 Copynumber: 2.3 Consensus size: 37
110112855 AAATGTATTT
*
110112865 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTAGAGATTATGTC
110112902 CGGGTAAGACCCGATGACTACGTGTAGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTAGAGATTATGTC
110112939 CGGGTAAGAC
1 CGGGTAAGAC
110112949 TTCATAATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTAGAGATTATGTC
Found at i:110120688 original size:29 final size:27
Alignment explanation
Indices: 110120588--110120688 Score: 98
Period size: 28 Copynumber: 3.6 Consensus size: 27
110120578 GTATAATAAG
110120588 CCCGCACACTTAGTGCT-TAATAGTCG-A
1 CCCGCACACTTAGTGCTATAA-A-TCGAA
* *
110120615 CCTCGTACACTTAGTGCTATATAATCAAA
1 CC-CGCACACTTAGTGCTATA-AATCGAA
* *
110120644 CTCGCACACTTAGTGCTATACAATTTGAA
1 CCCGCACACTTAGTGCTATA-AA-TCGAA
110120673 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
110120689 CAATCTCATG
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
27 2 0.03
28 35 0.57
29 23 0.38
30 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CCCGCACACTTAGTGCTATAAATCGAA
Found at i:110131503 original size:28 final size:29
Alignment explanation
Indices: 110131471--110131569 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
110131461 ATAATAAGCC
*
110131471 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
110131499 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
110131527 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
110131556 CGCACACTTAGTGC
1 CGCACACTTAGTGC
110131570 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:110134252 original size:19 final size:21
Alignment explanation
Indices: 110134213--110134253 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
110134203 TGTTTCCTCA
110134213 TAGCCTCCTCAAACTCCCATG
1 TAGCCTCCTCAAACTCCCATG
*
110134234 TAGCCTCGTC-AAC-CCCATG
1 TAGCCTCCTCAAACTCCCATG
110134253 T
1 T
110134254 CTTTTCCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 3 0.16
21 9 0.47
ACGTcount: A:0.22, C:0.41, G:0.12, T:0.24
Consensus pattern (21 bp):
TAGCCTCCTCAAACTCCCATG
Found at i:110145140 original size:17 final size:18
Alignment explanation
Indices: 110145098--110145146 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
110145088 AGTTGAAAAG
110145098 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
110145117 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
110145134 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
110145147 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:110146035 original size:40 final size:40
Alignment explanation
Indices: 110145969--110146135 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
110145959 AAATTGAATG
* * *
110145969 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
110146008 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
110146048 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
110146088 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
110146128 ATATCCGG
1 ATATCCGG
110146136 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:110161080 original size:30 final size:30
Alignment explanation
Indices: 110161044--110161104 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
110161034 TCCTTAACTC
110161044 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
110161074 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
110161104 A
1 A
110161105 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:110163872 original size:27 final size:27
Alignment explanation
Indices: 110163761--110163872 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
110163751 AGCATGGCTG
* ** *
110163761 CCAGAACAGATAA-TGTGATAGAGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
* *
110163787 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
* * *
110163815 CCAAAACA-AAAATATGTGGCAGAGCCA
1 CCAGATCAGATAAT-TGTGGCAGAGCCA
*
110163842 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
110163869 CCAG
1 CCAG
110163873 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
26 9 0.13
27 41 0.61
28 17 0.25
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:110165140 original size:22 final size:22
Alignment explanation
Indices: 110165113--110165155 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
110165103 ACAGAAGAAG
* *
110165113 AAAAGAATAACAAATGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
*
110165135 AAAAGAAAAATAAAAGGAGAG
1 AAAAGAAAAACAAAAGGAGAG
110165156 GAAGAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.07
Consensus pattern (22 bp):
AAAAGAAAAACAAAAGGAGAGA
Found at i:110168093 original size:40 final size:40
Alignment explanation
Indices: 110167991--110168173 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
110167981 AAATTGAATG
* * * * * *
110167991 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
110168031 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
110168071 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
110168110 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
110168150 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
110168174 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 35 0.29
40 85 0.71
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:110168126 original size:39 final size:38
Alignment explanation
Indices: 110168033--110168142 Score: 148
Period size: 39 Copynumber: 2.8 Consensus size: 38
110168023 TGGAAATTAT
* *
110168033 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTAGCTAA
* *
110168073 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTAGCTAA
110168112 ATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
110168143 AATCGTGATA
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
39 37 0.58
40 27 0.42
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAGTAGCTAA
Found at i:110176049 original size:40 final size:41
Alignment explanation
Indices: 110175990--110176091 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 41
110175980 AAATTGAATG
* *
110175990 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGGAAACT
* * * * **
110176030 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGGAAACT
110176071 ATATCCGGGCTAAGACCCGAA
1 ATATCCGGGCTAAGACCCGAA
110176092 NNNNNNNNNN
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
40 29 0.56
41 23 0.44
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.22
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGGAAACT
Found at i:110183963 original size:40 final size:39
Alignment explanation
Indices: 110183918--110184084 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 39
110183908 CGGAATATAA
110183918 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
110183958 CCGGATAGAATAACCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
** * *
110183997 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
110184037 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
110184077 CCGGATAT
1 CCGGATAT
110184085 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 33 0.31
40 70 0.67
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:110189986 original size:40 final size:40
Alignment explanation
Indices: 110189907--110190068 Score: 200
Period size: 40 Copynumber: 4.0 Consensus size: 40
110189897 CGAATGATAA
* * * * * *
110189907 CCGGACTAAGATCCGAAGGTATTCGTGCGACTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
110189947 CTGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
110189987 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
110190027 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
110190067 CC
1 CC
110190069 AGCTAAATCC
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 98 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:110190351 original size:22 final size:22
Alignment explanation
Indices: 110190311--110190352 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
110190301 GAATGTGCAT
*
110190311 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
110190333 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
110190353 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:110195453 original size:47 final size:44
Alignment explanation
Indices: 110195349--110195561 Score: 162
Period size: 47 Copynumber: 4.6 Consensus size: 44
110195339 TATGCATGCT
** * * *
110195349 GATGCATGTCCCAGACATATCTTACACTAGCACAACTCT-TGGTC
1 GATGCATGTCCCAGACACGTCTTACACTGGC-TATCTCTGTGGTC
*
110195393 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGTC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGT---GGTC
* * *
110195440 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACACGTCTTACACTGG--CT-ATCTCTGTGGTC
* * * *
110195486 GATGCCATGTCCCAGACATGGTCTTACACTGGCTAACATAATATGG-C
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTATC-T-CTGTGGTC
**
110195533 TGATGCATGTCCCAGACATATCTTACACT
1 -GATGCATGTCCCAGACACGTCTTACACT
110195562 AGCCCTCGTT
Statistics
Matches: 139, Mismatches: 17, Indels: 24
0.77 0.09 0.13
Matches are distributed among these distances:
43 5 0.04
44 28 0.20
45 2 0.01
46 18 0.13
47 60 0.43
48 16 0.12
49 2 0.01
50 8 0.06
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTGGTC
Found at i:110195546 original size:94 final size:94
Alignment explanation
Indices: 110195297--110195612 Score: 344
Period size: 94 Copynumber: 3.4 Consensus size: 94
110195287 GGATAAATTA
* * *
110195297 CCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATATGCATGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATATG-A-GCTGATGCATGTCCCA
*
110195362 GACATATCTTACACTAGCA--CAACTCT-TGG
64 GACATATCTTACACTAGCACTCATCTCTGT-G
* * * * * *
110195391 TCGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGTCGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAT-GAGCT-GATGCATGTCCCA
* * *
110195453 GACATGTCTTACTCTGGCACTCATCTCTGTG
64 GACATATCTTACACTAGCACTCATCTCTGTG
*
110195484 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAACATAATATG-GCTGATGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-ATATGAGCTGATGCATGTCCCAG
* *
110195548 ACATATCTTACACTAGCCCTCGT-T-TGGATG
65 ACATATCTTACACTAGCACTCATCTCT-G-TG
*
110195578 CCAATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
110195613 GCACAAATCA
Statistics
Matches: 185, Mismatches: 26, Indels: 22
0.79 0.11 0.09
Matches are distributed among these distances:
90 2 0.01
91 33 0.18
92 18 0.10
93 24 0.13
94 86 0.46
95 18 0.10
96 2 0.01
97 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATATGAGCTGATGCATGTCCCAGA
CATATCTTACACTAGCACTCATCTCTGTG
Found at i:110198390 original size:24 final size:24
Alignment explanation
Indices: 110198362--110198431 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 24
110198352 TCAACTCGTA
**
110198362 AGAGCTTACTGTTTTCAGCTCGTT
1 AGAGCTTACTGTTTTCAGCTCAAT
* *
110198386 GGAGCTTACCG-TTTCAGCTCAAT
1 AGAGCTTACTGTTTTCAGCTCAAT
*
110198409 AGAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT-TTCAGCTCA
110198432 GGAGGATCTT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 19 0.51
24 10 0.27
25 8 0.22
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (24 bp):
AGAGCTTACTGTTTTCAGCTCAAT
Found at i:110200524 original size:40 final size:40
Alignment explanation
Indices: 110200469--110200693 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
110200459 CTAACGGGGT
* * *
110200469 TAAGTCCCGAAGGCATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
110200509 TAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
110200549 TAAGTCCTGAAGGAATTGGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
110200589 TAAGTCCCGAAGACATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
110200629 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
110200669 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
110200694 GGTTATATCC
Statistics
Matches: 164, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 11 0.07
40 153 0.93
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:110200702 original size:39 final size:40
Alignment explanation
Indices: 110200469--110200719 Score: 260
Period size: 40 Copynumber: 6.3 Consensus size: 40
110200459 CTAACGGGGT
* *
110200469 TAAGTCCCGAAGGCATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* * *
110200509 TAAGTCCTGAAGGCATTTGTGCGAGTTACTA-ATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* * * *
110200549 TAAGTCCTGAAGGAATTGGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* *
110200589 TAAGTCCCGAAGACATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* *
110200629 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
110200669 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* *
110200707 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
110200720 TACTTGGTTT
Statistics
Matches: 183, Mismatches: 27, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
38 12 0.07
39 16 0.09
40 154 0.84
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:110202130 original size:20 final size:20
Alignment explanation
Indices: 110202084--110202131 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
110202074 TGTGCATAAA
110202084 TACTGTTTATATGGATGAAG
1 TACTGTTTATATGGATGAAG
*
110202104 TATTGTTTATATGGATG-AG
1 TACTGTTTATATGGATGAAG
110202123 CTACTGTTT
1 -TACTGTTT
110202132 GCGAATGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.46
Consensus pattern (20 bp):
TACTGTTTATATGGATGAAG
Found at i:110204125 original size:24 final size:24
Alignment explanation
Indices: 110204092--110204191 Score: 119
Period size: 24 Copynumber: 4.0 Consensus size: 24
110204082 CGACATTTTG
* *
110204092 CTAAGAGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
*
110204116 CTAAGTGAAATAACTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
110204143 GCTAAGTGAAAAAAGTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
110204168 CTAAGTGAAATAAGTCCACGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
110204192 TGAACTAAGT
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
24 41 0.63
25 2 0.03
27 2 0.03
28 20 0.31
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:110204168 original size:52 final size:52
Alignment explanation
Indices: 110204090--110204190 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
110204080 TACGACATTT
* *
110204090 TGCTAAGAGAAATAAGACCATGGCATCTAAGTGAAATAACTCCATGGCAATG
1 TGCTAAGAGAAAAAAGACCATGGCATCTAAGTGAAATAACTCCACGGCAATG
* * *
110204142 TGCTAAGTGAAAAAAGTCCATGGCATCTAAGTGAAATAAGTCCACGGCA
1 TGCTAAGAGAAAAAAGACCATGGCATCTAAGTGAAATAACTCCACGGCA
110204191 TTGAACTAAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.21
Consensus pattern (52 bp):
TGCTAAGAGAAAAAAGACCATGGCATCTAAGTGAAATAACTCCACGGCAATG
Found at i:110204200 original size:52 final size:52
Alignment explanation
Indices: 110204092--110204203 Score: 152
Period size: 52 Copynumber: 2.2 Consensus size: 52
110204082 CGACATTTTG
* * * **
110204092 CTAAGAGAAATAAGACCATGGCATCTAAGTGAAATAACTCCATGGCAATGTG
1 CTAAGTGAAAAAAGACCATGGCATCTAAGTGAAATAACTCCACGGCAATGAA
* * *
110204144 CTAAGTGAAAAAAGTCCATGGCATCTAAGTGAAATAAGTCCACGGCATTGAA
1 CTAAGTGAAAAAAGACCATGGCATCTAAGTGAAATAACTCCACGGCAATGAA
110204196 CTAAGTGA
1 CTAAGTGA
110204204 GAAATTTCCC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (52 bp):
CTAAGTGAAAAAAGACCATGGCATCTAAGTGAAATAACTCCACGGCAATGAA
Found at i:110209441 original size:48 final size:48
Alignment explanation
Indices: 110209263--110209441 Score: 250
Period size: 48 Copynumber: 3.7 Consensus size: 48
110209253 AGTGCTGAGA
* * * * *
110209263 CCATATCCTAGACATGGTCTTACACTAGCACAAATATCATCACCGATG
1 CCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCGATG
* *
110209311 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCAATG
1 CCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCGATG
* *
110209359 CTATGTCCTAGACATGGTCTTACACTGCCACACATATCAACGCCGATG
1 CCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCGATG
* * *
110209407 CCATGTCCTAGACATGGTCTCACATTGGCTCACAT
1 CCATGTCCTAGACATGGTCTTACACTGGCACACAT
110209442 TAACCATGGT
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (48 bp):
CCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCGATG
Found at i:110210323 original size:21 final size:21
Alignment explanation
Indices: 110210297--110210339 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
110210287 TAAACACACT
110210297 TCAATCTTTCATATTCTTCCA
1 TCAATCTTTCATATTCTTCCA
110210318 TCAATCTTTCATATTCTTCCA
1 TCAATCTTTCATATTCTTCCA
110210339 T
1 T
110210340 AAATATTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (21 bp):
TCAATCTTTCATATTCTTCCA
Found at i:110212323 original size:24 final size:24
Alignment explanation
Indices: 110212293--110212583 Score: 501
Period size: 24 Copynumber: 12.1 Consensus size: 24
110212283 GAATGTGACT
* *
110212293 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
110212317 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110212341 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110212365 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110212389 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110212413 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110212437 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110212461 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110212485 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110212509 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110212533 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110212557 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110212581 ATA
1 ATA
110212584 TGGTCTTTGC
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 261 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:110220379 original size:24 final size:24
Alignment explanation
Indices: 110220349--110220639 Score: 501
Period size: 24 Copynumber: 12.1 Consensus size: 24
110220339 GAATGTGACT
* *
110220349 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
110220373 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110220397 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110220421 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110220445 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110220469 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110220493 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110220517 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110220541 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110220565 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
110220589 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110220613 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
110220637 ATA
1 ATA
110220640 TGGTCTTTGC
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 261 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:110223711 original size:2 final size:2
Alignment explanation
Indices: 110223704--110223744 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
110223694 ATTTTAACTT
110223704 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
110223745 CACAAATCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:110231219 original size:2 final size:2
Alignment explanation
Indices: 110231212--110231236 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
110231202 CATTTTAACT
110231212 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
110231237 CACAAATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:110237936 original size:48 final size:47
Alignment explanation
Indices: 110237805--110237928 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 47
110237795 TAGTGCTGAT
* * *
110237805 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCATCGAT
1 GCCATGT-CCAGACATGGTCTTACACTAGCACACATATCAACACCGAA
* *
110237853 GCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCGAA
1 GCCATGTCC-AGACATGGTCTTACACTAGCACACATATCAACACCGAA
110237901 GCCATGTACCAGACATGGTCTTACACTA
1 GCCATGT-CCAGACATGGTCTTACACTA
110237929 CCTCACATTA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
47 2 0.03
48 64 0.94
49 2 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (47 bp):
GCCATGTCCAGACATGGTCTTACACTAGCACACATATCAACACCGAA
Found at i:110238443 original size:13 final size:13
Alignment explanation
Indices: 110238425--110238453 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
110238415 AGCACGACTT
110238425 ACACGGGTGGATC
1 ACACGGGTGGATC
110238438 ACACGGGTGGATC
1 ACACGGGTGGATC
110238451 ACA
1 ACA
110238454 TAGGAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.24, G:0.34, T:0.14
Consensus pattern (13 bp):
ACACGGGTGGATC
Found at i:110239109 original size:40 final size:40
Alignment explanation
Indices: 110239053--110239229 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
110239043 CGGATGATAA
* * * *
110239053 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTTCTATAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAT
* * * * * *
110239093 CCGGGCTATGTCCCGAAGGCATTTATCCTAGTGAT-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TTCTATAT
*
110239133 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAT
110239173 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGT-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTT-TCTATAT
110239213 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
110239230 ATACTTGGGT
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 100 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAT
Found at i:110239191 original size:80 final size:80
Alignment explanation
Indices: 110239053--110239229 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
110239043 CGGATGATAA
* * * * *
110239053 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTTCTATAACCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAACCGGGCTAAGACCCGAAGGCATTTA
*
110239118 TCCTAG-TGATTATAT
66 TCCGAGTTG-TTATAT
* * *
110239133 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAACCGGGCTAAGACCCGAAGGCATTTA
*
110239198 TGCGAGTTGTTATAT
66 TCCGAGTTGTTATAT
110239213 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
110239230 ATACTTGGGT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 69 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAACCGGGCTAAGACCCGAAGGCATTTA
TCCGAGTTGTTATAT
Found at i:110241940 original size:51 final size:51
Alignment explanation
Indices: 110241863--110241991 Score: 199
Period size: 51 Copynumber: 2.5 Consensus size: 51
110241853 TTCGGGATGT
*
110241863 TACAAGTGTA-GTACTACGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGAC
1 TACAAGTG-AGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGG-C
110241915 -ACAAGTGAGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGC
1 TACAAGTGAGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGC
* *
110241965 TACAAGGGTGGTACTATGTGAAGGCCA
1 TACAAGTGAGGTACTATGTGAAGGCCA
110241992 GTGCGTATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
50 2 0.03
51 70 0.97
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (51 bp):
TACAAGTGAGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGC
Found at i:110243012 original size:13 final size:13
Alignment explanation
Indices: 110242996--110243020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110242986 TGTGAGCAGA
110242996 CCGTGTGTCTAAC
1 CCGTGTGTCTAAC
110243009 CCGTGTGTCTAA
1 CCGTGTGTCTAA
110243021 ATAGGGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (13 bp):
CCGTGTGTCTAAC
Done.