Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 360 of 770
Found at i:110598204 original size:28 final size:28
Alignment explanation
Indices: 110598135--110598235 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
110598125 GACAAGATTG
* * * *
110598135 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
110598165 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
110598193 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
110598222 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
110598236 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:110604933 original size:46 final size:46
Alignment explanation
Indices: 110604878--110605058 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
110604868 TAGGATGGTT
110604878 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
110604924 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
110604970 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
110605017 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
110605059 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:110605039 original size:93 final size:93
Alignment explanation
Indices: 110604880--110605050 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
110604870 GGATGGTTGA
* *
110604880 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
110604945 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
110604973 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
110605038 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
110605051 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:110608050 original size:15 final size:15
Alignment explanation
Indices: 110608011--110608089 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
110608001 GTATCTTGGG
*
110608011 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
110608026 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
110608041 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
110608055 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
110608070 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
110608084 TTTCTT
1 TTTCTT
110608090 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:110608074 original size:29 final size:29
Alignment explanation
Indices: 110608002--110608088 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
110607992 CATAGTATCG
* * * *
110608002 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
110608032 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
110608061 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
110608089 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:110610519 original size:46 final size:46
Alignment explanation
Indices: 110610464--110610644 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
110610454 TAGGATGGTT
110610464 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
110610510 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
110610556 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
110610603 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
110610645 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:110610625 original size:93 final size:93
Alignment explanation
Indices: 110610466--110610636 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
110610456 GGATGGTTGA
* *
110610466 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
110610531 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
110610559 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
110610624 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
110610637 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:110618080 original size:229 final size:229
Alignment explanation
Indices: 110617679--110618381 Score: 1361
Period size: 229 Copynumber: 3.1 Consensus size: 229
110617669 AATTACAGCA
*
110617679 TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGAAAATTATAATAAATAT
1 TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGGAAATTATAATAAATAT
110617744 ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
66 ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
110617809 AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATTCTAGGTTCAAATCTAGT
131 AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATTCTAGGTTCAAATCTAGT
110617874 TTTCCGGGATCTAAAACATCATATTTTACTTATT
196 TTTCCGGGATCTAAAACATCATATTTTACTTATT
110617908 TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGGAAATTATAATAAATAT
1 TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGGAAATTATAATAAATAT
110617973 ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
66 ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
*
110618038 AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATCCTAGGTTCAAATCTAGT
131 AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATTCTAGGTTCAAATCTAGT
110618103 TTTCCGGGATCTAAAACATCATATTTTACTTATT
196 TTTCCGGGATCTAAAACATCATATTTTACTTATT
110618137 TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGGAAATTATAATAAATAT
1 TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGGAAATTATAATAAATAT
110618202 ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
66 ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
110618267 AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATTCTAGGTTCAAATCTAGT
131 AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATTCTAGGTTCAAATCTAGT
110618332 TTTCCGGGATCTAAAACATCATATTTTACTTATT
196 TTTCCGGGATCTAAAACATCATATTTTACTTATT
* * *
110618366 TAATTAATGTACTATT
1 TTATTACTGTATTATT
110618382 CAAAACAGTC
Statistics
Matches: 468, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
229 468 1.00
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (229 bp):
TTATTACTGTATTATTATCATACCAATTTACATACTTTCAACACCTCGGAAATTATAATAAATAT
ATTAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATATGAACTTACCTTGATACT
AAAACGGCCATTTTACCAACTTTCCCAATTTTCGATTTTTCTATCATTCTAGGTTCAAATCTAGT
TTTCCGGGATCTAAAACATCATATTTTACTTATT
Found at i:110622542 original size:19 final size:18
Alignment explanation
Indices: 110622509--110622544 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
110622499 AACTTGGCAC
*
110622509 CATAATCATTTAATTCAA
1 CATAATCAATTAATTCAA
110622527 CATAATTCAATTAATTCA
1 CATAA-TCAATTAATTCA
110622545 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (18 bp):
CATAATCAATTAATTCAA
Found at i:110624608 original size:47 final size:47
Alignment explanation
Indices: 110624537--110624692 Score: 213
Period size: 47 Copynumber: 3.3 Consensus size: 47
110624527 CCCTTCGGGA
* * * * * * *
110624537 CTTATCAAATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
110624584 CCTATCACATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
110624631 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
110624680 CTTATCACATATA
1 CTTATCACATATA
110624693 CTATCATGTA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 50 0.52
49 46 0.48
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:110624659 original size:49 final size:49
Alignment explanation
Indices: 110624548--110624692 Score: 213
Period size: 49 Copynumber: 3.0 Consensus size: 49
110624538 TTATCAAATT
* * * * * *
110624548 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
110624595 TATACACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
110624644 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
110624693 CTATCATGTA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 37 0.42
49 51 0.58
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:110628838 original size:40 final size:40
Alignment explanation
Indices: 110628806--110629037 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
110628796 CCAGCATGAT
* * * *
110628806 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
110628846 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGAACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
110628886 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
110628926 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
110628966 TGCTCTTCGAGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
110629006 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
110629038 CTCAATTCTC
Statistics
Matches: 170, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:110630521 original size:47 final size:47
Alignment explanation
Indices: 110630450--110630605 Score: 213
Period size: 47 Copynumber: 3.3 Consensus size: 47
110630440 CCCTTCGGGA
* ** * * * *
110630450 CTTATCACATTTATACACTTTCACAACCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
110630497 CCTATCACATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
110630544 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
110630593 CTTATCACATATA
1 CTTATCACATATA
110630606 CTATCATGTA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 50 0.52
49 46 0.48
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:110630572 original size:49 final size:49
Alignment explanation
Indices: 110630450--110630605 Score: 212
Period size: 49 Copynumber: 3.3 Consensus size: 49
110630440 CCCTTCGGGA
** * * * *
110630450 CTTATCACAT-T-TATACACTTTCACAACCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
110630497 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
110630544 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
110630593 CTTATCACATATA
1 CTTATCACATATA
110630606 CTATCATGTA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 43 0.45
49 51 0.54
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:110637509 original size:40 final size:40
Alignment explanation
Indices: 110637422--110637534 Score: 106
Period size: 40 Copynumber: 2.8 Consensus size: 40
110637412 GATTATGTTC
* *
110637422 GGCACTAAGTGTGTGGTTCGAAATAGTTTTGGCTACAAATG
1 GGCACTAAGTGTGTGGTTCGAAATAGCTTCGGCTA-AAATG
* *
110637463 GG-ACTAAGTGTGTGAGTT-GGAATAGCTTCGGCT-ATATG
1 GGCACTAAGTGTGTG-GTTCGAAATAGCTTCGGCTAAAATG
* * *
110637501 AGGCACTAAGTGTGCGATATCGAGATAGCTTCGG
1 -GGCACTAAGTGTGTGGT-TCGAAATAGCTTCGG
110637535 TTTATTGAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
38 4 0.07
39 3 0.05
40 36 0.61
41 16 0.27
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (40 bp):
GGCACTAAGTGTGTGGTTCGAAATAGCTTCGGCTAAAATG
Found at i:110645607 original size:32 final size:32
Alignment explanation
Indices: 110645560--110645626 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
110645550 TACTCAATTA
* *
110645560 AATTTCCGTACATACCTGTACCATATTGTACC
1 AATTTCCATACATACCTGTACCATATCGTACC
* * *
110645592 AATTTCCATAGATACCTGTATCATCTCGTACC
1 AATTTCCATACATACCTGTACCATATCGTACC
110645624 AAT
1 AAT
110645627 CTCATACTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (32 bp):
AATTTCCATACATACCTGTACCATATCGTACC
Found at i:110645760 original size:27 final size:27
Alignment explanation
Indices: 110645720--110645774 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
110645710 TAAGTGCTGT
*
110645720 TCTGGATGTTTCGCACACTAAGTGCCA
1 TCTGGATGTATCGCACACTAAGTGCCA
110645747 TCTGGATGTATCGCACACTAAGTGCCA
1 TCTGGATGTATCGCACACTAAGTGCCA
110645774 T
1 T
110645775 GACCGATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (27 bp):
TCTGGATGTATCGCACACTAAGTGCCA
Found at i:110651771 original size:32 final size:32
Alignment explanation
Indices: 110651735--110651833 Score: 144
Period size: 32 Copynumber: 3.1 Consensus size: 32
110651725 TACTTAATTG
110651735 AATTTTTGTACATACCTGTACCATATTGTACC
1 AATTTTTGTACATACCTGTACCATATTGTACC
110651767 AATTTTTGTACATACCTGTACCATATTGTACC
1 AATTTTTGTACATACCTGTACCATATTGTACC
** * * * *
110651799 AATTTCCGTAGATACCTGTATCATCTCGTACC
1 AATTTTTGTACATACCTGTACCATATTGTACC
110651831 AAT
1 AAT
110651834 CTCATATTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (32 bp):
AATTTTTGTACATACCTGTACCATATTGTACC
Found at i:110651999 original size:28 final size:28
Alignment explanation
Indices: 110651916--110652010 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
110651906 ACCTTGCACC
* * *
110651916 CTAAGTGTCGTTCTGGATGTTTCACACA
1 CTAAGTGCCATTCTGGATGTATCACACA
* * **
110651944 CTAAGTGCCATCCTCG-T-TACTTTGCACA
1 CTAAGTGCCATTCTGGATGTA--TCACACA
110651972 CTAAGTGCCATTCTGGATGTATCACACA
1 CTAAGTGCCATTCTGGATGTATCACACA
110652000 CTAAGTGCCAT
1 CTAAGTGCCAT
110652011 CACCGATATC
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 47 0.90
29 1 0.02
30 2 0.04
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (28 bp):
CTAAGTGCCATTCTGGATGTATCACACA
Found at i:110652024 original size:28 final size:27
Alignment explanation
Indices: 110651937--110652033 Score: 79
Period size: 28 Copynumber: 3.5 Consensus size: 27
110651927 TCTGGATGTT
*
110651937 TCACACACTAAGTGCCATCCTCGTTA-C
1 TCACACACTAAGTGCCATCC-CGATATC
** ** * *
110651964 TTTGCACACTAAGTGCCATTCTGGATGTA
1 -TCACACACTAAGTGCCA-TCCCGATATC
110651993 TCACACACTAAGTGCCATCACCGATATC
1 TCACACACTAAGTGCCATC-CCGATATC
*
110652021 TCACACATTAAGT
1 TCACACACTAAGT
110652034 ACCACATATA
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
27 2 0.04
28 48 0.92
29 2 0.04
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.28
Consensus pattern (27 bp):
TCACACACTAAGTGCCATCCCGATATC
Found at i:110652033 original size:56 final size:56
Alignment explanation
Indices: 110651876--110652026 Score: 152
Period size: 56 Copynumber: 2.7 Consensus size: 56
110651866 TGAACATTCA
* * * * *
110651876 ATGTATCGCACACT-AGATACCATACC-CGATAC-CTTGCACCCTAAGTGTCGTTCTGG
1 ATGTATCACACACTAAG-TGCCAT-CCTCGATACTC-TGCACACTAAGTGCCATTCTGG
* * *
110651932 ATGTTTCACACACTAAGTGCCATCCTCGTTACTTTGCACACTAAGTGCCATTCTGG
1 ATGTATCACACACTAAGTGCCATCCTCGATACTCTGCACACTAAGTGCCATTCTGG
110651988 ATGTATCACACACTAAGTGCCATCAC-CGATA-TCT-CACAC
1 ATGTATCACACACTAAGTGCCATC-CTCGATACTCTGCACAC
110652027 ATTAAGTACC
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
54 5 0.06
55 4 0.05
56 68 0.85
57 3 0.04
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (56 bp):
ATGTATCACACACTAAGTGCCATCCTCGATACTCTGCACACTAAGTGCCATTCTGG
Found at i:110657170 original size:27 final size:27
Alignment explanation
Indices: 110657140--110657322 Score: 235
Period size: 27 Copynumber: 6.8 Consensus size: 27
110657130 ATTACCAAAG
* * *
110657140 TACCCCCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* **
110657167 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
110657193 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
110657220 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
110657247 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
110657274 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
110657301 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
110657323 AGAAATACCC
Statistics
Matches: 139, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.17
27 116 0.83
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:110657253 original size:54 final size:54
Alignment explanation
Indices: 110657140--110657322 Score: 262
Period size: 54 Copynumber: 3.4 Consensus size: 54
110657130 ATTACCAAAG
* * * **
110657140 TACCCCCGATTTACAGAATTA-TCGTTTTACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTACAGAATTACTATTT
*
110657193 TACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
110657247 TACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
110657301 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
110657323 AGAAATACCC
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
53 28 0.24
54 89 0.76
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:110657332 original size:54 final size:54
Alignment explanation
Indices: 110657086--110657387 Score: 211
Period size: 54 Copynumber: 5.6 Consensus size: 54
110657076 AATACTGAAA
** * * ***
110657086 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTA-A-AATTACCAAAG
1 TACCCTCGATTTACAAAATTACAGAAATACCCTCGA-TT-TACAGAATTACCATTT
* * *** * *
110657140 TACCCCCGATTTACAGAATTATC-GTTTTACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CAGAAATACCCTCGATTTACAGAATTACCATTT
* *** * *
110657193 TACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACAGAAATACCCTCGATTTACAGAATTACCATTT
* *** * *
110657247 TACCCTCGATTTATAAAATTACTA-TTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTAC-AGAAATACCCTCGATTTACAGAATTACCATTT
* ** * ***
110657301 TACCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACAGAAATACCCTCGATTTACAGAATTACCATTT
*
110657355 TACCC-CTGATTTACAAAGTTACAGAAATACCCT
1 TACCCTC-GATTTACAAAATTACAGAAATACCCT
110657388 TGACTTTCTA
Statistics
Matches: 204, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
51 2 0.01
52 4 0.02
53 40 0.20
54 157 0.77
55 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACAGAAATACCCTCGATTTACAGAATTACCATTT
Found at i:110657332 original size:81 final size:81
Alignment explanation
Indices: 110657167--110657351 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
110657157 ATTATCGTTT
* * * *
110657167 TACCC-CGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCAATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
* ***
110657231 TACAGAATTACTATTT
66 TACAAAATTACTAAAA
* * * *
110657247 TACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
110657312 TACAAAATTAC-AGAAA
66 TACAAAATTACTA-AAA
* *
110657328 TACCCTCAATTTGTAAAATTACCA
1 TACCCTCGATTTATAAAATTACCA
110657352 AAATACCCCT
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 6 0.07
81 82 0.93
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
TACAAAATTACTAAAA
Found at i:110657359 original size:81 final size:81
Alignment explanation
Indices: 110657193--110657376 Score: 208
Period size: 81 Copynumber: 2.3 Consensus size: 81
110657183 ATTACCGTTT
* * * *** *
110657193 TACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTAAAATACCCTCAATT
* ***
110657258 TATAAAATTACTATTT
66 TATAAAATTACCAAAA
* *
110657274 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC-AGAAATACCCTCAAT
1 TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTA-AAATACCCTCAAT
*
110657338 TTGTAAAATTACCAAAA
65 TTATAAAATTACCAAAA
* *
110657355 TACCCCTGATTTACAAAGTTAC
1 TACCCTTGATTTACAAAATTAC
110657377 AGAAATACCC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 84 0.99
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACTATTTTACCCTCAATTTACAAAATTACTAAAATACCCTCAATT
TATAAAATTACCAAAA
Found at i:110657425 original size:56 final size:55
Alignment explanation
Indices: 110657308--110657445 Score: 163
Period size: 56 Copynumber: 2.5 Consensus size: 55
110657298 TTTTACCCTC
* * *
110657308 GATTTACAAAATTACAGAAATACCC-TCAATTTGTAAAATTACCAAAATACCCCT
1 GATTTACAAAATTACAGAAATACCCTTGAATTTCTAAAATTACCAAAATACCACT
* * * *
110657362 GATTTACAAAGTTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATT
1 GATTTACAAAATTACAGAAATACCCTTGAATTTCT-AAAATTACCA-AAATACCACT
* *
110657418 GGTTTACAAAATTACTGAAATACCCTTG
1 GATTTACAAAATTACAGAAATACCCTTG
110657446 GTTTGTAGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
54 24 0.34
55 7 0.10
56 40 0.56
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (55 bp):
GATTTACAAAATTACAGAAATACCCTTGAATTTCTAAAATTACCAAAATACCACT
Found at i:110657449 original size:27 final size:27
Alignment explanation
Indices: 110657040--110657445 Score: 168
Period size: 27 Copynumber: 15.0 Consensus size: 27
110657030 AATACTTTAC
* *
110657040 TTTACTAAAATTACCGAAATACCCTTAGT
1 TTTAC-AAAATTACTGAAATACCCTT-GA
*
110657069 TTGTA-AAAA-TACTGAAATACCCTCGA
1 TT-TACAAAATTACTGAAATACCCTTGA
**
110657095 TTTGTAAAATTACTGAAATA-CCTTCGA
1 TTTACAAAATTACTGAAATACCCTT-GA
* ** * **
110657122 CTTGTAAAATTAC-CAAAGTACCCCCGA
1 TTTACAAAATTACTGAAA-TACCCTTGA
* *** *
110657149 TTTACAGAATTA-TCGTTTTACCC-CGA
1 TTTACAAAATTACT-GAAATACCCTTGA
* * *** *
110657175 TTTACATAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTTGA
*** **
110657202 TTTACAAAATTACTGTTTTACCCTCAA
1 TTTACAAAATTACTGAAATACCCTTGA
* ** *
110657229 TTTACAGAATTACT-ATTTTACCCTCGA
1 TTTACAAAATTACTGA-AATACCCTTGA
* **
110657256 TTTATAAAATTACT-ATTTTACCCTTGA
1 TTTACAAAATTACTGA-AATACCCTTGA
* ** *
110657283 TTTACAGAATTACT-ATTTTACCCTCGA
1 TTTACAAAATTACTGA-AATACCCTTGA
* **
110657310 TTTACAAAATTACAGAAATACCCTCAA
1 TTTACAAAATTACTGAAATACCCTTGA
** ** *
110657337 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACTGAAATACCCTTGA
* *
110657364 TTTACAAAGTTACAGAAATACCCTTGA
1 TTTACAAAATTACTGAAATACCCTTGA
* *
110657391 CTTT-CTAAAAATTA-TAGAAATACCATTGG
1 -TTTAC--AAAATTACT-GAAATACCCTTGA
110657420 TTTACAAAATTACTGAAATACCCTTG
1 TTTACAAAATTACTGAAATACCCTTG
110657446 GTTTGTAGAT
Statistics
Matches: 305, Mismatches: 54, Indels: 38
0.77 0.14 0.10
Matches are distributed among these distances:
25 1 0.00
26 36 0.12
27 232 0.76
28 14 0.05
29 20 0.07
30 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGA
Found at i:110657533 original size:27 final size:27
Alignment explanation
Indices: 110657502--110657594 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
110657492 TACCCCTATT
*
110657502 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
110657529 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
110657556 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
110657583 TGGTAAAATGAC
1 AGGTAAAATGAC
110657595 GAATATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:110658853 original size:9 final size:9
Alignment explanation
Indices: 110658841--110658897 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
110658831 TTTGATAAAC
110658841 ATGATATGT
1 ATGATATGT
110658850 ATGATATGT
1 ATGATATGT
*
110658859 ACATGACATGT
1 --ATGATATGT
*
110658870 ATGATATGCAC
1 ATGATATG--T
110658881 ATGATATGT
1 ATGATATGT
110658890 ATGATATG
1 ATGATATG
110658898 CACACGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:110658864 original size:20 final size:20
Alignment explanation
Indices: 110658839--110658901 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
110658829 ATTTTGATAA
*
110658839 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
*
110658859 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
110658879 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
110658899 ACA
1 ACA
110658902 CGAGATGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:110659011 original size:24 final size:23
Alignment explanation
Indices: 110658955--110659121 Score: 210
Period size: 24 Copynumber: 7.0 Consensus size: 23
110658945 GAGGAAGTGA
*
110658955 AAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
110658978 TAAAGGGCTTATGCCGCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
110659001 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
110659025 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
110659049 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
110659072 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
110659097 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
110659121 A
1 A
110659122 TGATAAAGCA
Statistics
Matches: 127, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
23 41 0.32
24 75 0.59
25 11 0.09
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:110659054 original size:47 final size:46
Alignment explanation
Indices: 110658956--110659121 Score: 208
Period size: 47 Copynumber: 3.5 Consensus size: 46
110658946 AGGAAGTGAA
* * * *
110658956 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCGCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-T
*
110659003 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
110659050 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
110659097 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
110659122 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
47 65 0.61
48 30 0.28
49 11 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:110659071 original size:71 final size:71
Alignment explanation
Indices: 110658955--110659120 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
110658945 GAGGAAGTGA
* * * *
110658955 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCGCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
110659020 GTTATC
66 GTTATC
*
110659026 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
110659091 GTTATT
66 GTTATC
*
110659097 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
110659121 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:110659348 original size:31 final size:31
Alignment explanation
Indices: 110659313--110659376 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
110659303 CGTTTACAGT
*
110659313 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
110659344 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
110659375 AA
1 AA
110659377 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:110663949 original size:37 final size:37
Alignment explanation
Indices: 110663841--110663952 Score: 161
Period size: 37 Copynumber: 3.0 Consensus size: 37
110663831 CTTTAGCTCG
* * **
110663841 AATAATCCCCACACGTAGTTATCGGGTCTTACCTAGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
*
110663878 AAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
* *
110663915 CATAATCTCCACACGTAGTCATCGGGTTTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
110663952 A
1 A
110663953 TATATTTCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
Found at i:110664150 original size:48 final size:48
Alignment explanation
Indices: 110664092--110664237 Score: 229
Period size: 48 Copynumber: 3.0 Consensus size: 48
110664082 ATATACACAC
* *
110664092 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
110664140 ATCTCATACATACTTCACATTAGCCATTCGGGTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
110664188 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
110664236 AT
1 AT
110664238 TTATCTTGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:110664982 original size:28 final size:28
Alignment explanation
Indices: 110664942--110664999 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
110664932 AGTTTAAGAC
110664942 ATATCATGGCCACATCATATCTTATTAA
1 ATATCATGGCCACATCATATCTTATTAA
110664970 ATATCATGGCCACATCATATCTTATTAA
1 ATATCATGGCCACATCATATCTTATTAA
110664998 AT
1 AT
110665000 CAACTCATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (28 bp):
ATATCATGGCCACATCATATCTTATTAA
Found at i:110668113 original size:29 final size:30
Alignment explanation
Indices: 110668071--110668151 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 30
110668061 GCTTGGTTGA
*
110668071 AGAACTCGCTCACACAGTGCCTCAATT-AC
1 AGAACTCGCACACACAGTGCCTCAATTAAC
* * *
110668100 TGAACTCGCACACATAGTG-CTCGATTAAC
1 AGAACTCGCACACACAGTGCCTCAATTAAC
* *
110668129 AGAATTTGCACACACAGTGCCTC
1 AGAACTCGCACACACAGTGCCTC
110668152 TAATCATTCG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 6 0.14
29 33 0.79
30 3 0.07
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (30 bp):
AGAACTCGCACACACAGTGCCTCAATTAAC
Found at i:110670631 original size:124 final size:124
Alignment explanation
Indices: 110670409--110670633 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
110670399 GAATTATGTG
* * * * * * *
110670409 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
110670474 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
110670533 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
110670598 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
110670634 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:110670755 original size:40 final size:40
Alignment explanation
Indices: 110670628--110670757 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
110670618 TTGCTGGAAA
* * *
110670628 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
110670668 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
110670708 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
110670748 TTATATCCGG
1 TTATATCCGG
110670758 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:110678832 original size:40 final size:40
Alignment explanation
Indices: 110678705--110678834 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
110678695 ATGCTGGAAA
* * *
110678705 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
110678745 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
110678785 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
110678825 TTATATCCGG
1 TTATATCCGG
110678835 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:110686625 original size:78 final size:81
Alignment explanation
Indices: 110686505--110686686 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
110686495 TACTCGTTCA
* *
110686505 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
110686568 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
110686584 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
110686647 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
110686663 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
110686687 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:110686686 original size:40 final size:40
Alignment explanation
Indices: 110686484--110686686 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
110686474 CGGAATTTAA
** *
110686484 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
110686524 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
110686564 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
110686602 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
110686642 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
110686682 CCGGA
1 CCGGA
110686687 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:110694615 original size:39 final size:40
Alignment explanation
Indices: 110694530--110694712 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
110694520 GCTACTCGTT
* *
110694530 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATT-TAGTAACTCGCA
110694570 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
* * *
110694609 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
* * * *
110694648 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGACCGGATTTAGTAAC-TCGCA
*
110694689 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGACCGGA
110694713 CATCATTCGA
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
38 6 0.05
39 67 0.53
40 45 0.36
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
Found at i:110694673 original size:79 final size:79
Alignment explanation
Indices: 110694532--110694712 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 79
110694522 TACTCGTTCA
* *
110694532 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGAT
1 AATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGAT
* *
110694596 TTAGTAAC-TCGCACC
65 ATAGTAACTTAGCA-C
*
110694611 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACCGGA
*
110694674 TATAGTCACTTAGCAC
64 TATAGTAACTTAGCAC
* *
110694690 AAAGCCTTCGGACTTAGCCCGGA
1 AATGCCTTCGGGCTTAGCCCGGA
110694713 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 36 0.40
79 47 0.52
80 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCGGATA
TAGTAACTTAGCAC
Found at i:110699901 original size:24 final size:24
Alignment explanation
Indices: 110699869--110699955 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
110699859 AATCTCAAAT
110699869 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
110699893 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
110699917 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
110699941 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
110699956 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:110699921 original size:48 final size:48
Alignment explanation
Indices: 110699869--110699977 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
110699859 AATCTCAAAT
** *
110699869 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
110699917 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
110699965 GCACTATGTGTGC
1 GCACTATGTGTGC
110699978 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:110699968 original size:24 final size:24
Alignment explanation
Indices: 110699869--110699977 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
110699859 AATCTCAAAT
*
110699869 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
110699893 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
110699917 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
110699941 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
110699965 GCACTATGTGTGC
1 GCACTATGTGTGC
110699978 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:110707773 original size:24 final size:24
Alignment explanation
Indices: 110707741--110707827 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
110707731 AATCTCAAAT
110707741 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
110707765 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
110707789 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
110707813 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
110707828 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:110707793 original size:48 final size:48
Alignment explanation
Indices: 110707741--110707849 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
110707731 AATCTCAAAT
** *
110707741 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
110707789 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
110707837 GCACTATGTGTGC
1 GCACTATGTGTGC
110707850 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:110707840 original size:24 final size:24
Alignment explanation
Indices: 110707741--110707849 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
110707731 AATCTCAAAT
*
110707741 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
110707765 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
110707789 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
110707813 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
110707837 GCACTATGTGTGC
1 GCACTATGTGTGC
110707850 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:110708573 original size:14 final size:14
Alignment explanation
Indices: 110708554--110708582 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
110708544 AGCTGCAGTG
110708554 AGGTGGATGTGAAA
1 AGGTGGATGTGAAA
110708568 AGGTGGATGTGAAA
1 AGGTGGATGTGAAA
110708582 A
1 A
110708583 ATCACTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.21
Consensus pattern (14 bp):
AGGTGGATGTGAAA
Found at i:110713605 original size:40 final size:40
Alignment explanation
Indices: 110713568--110713748 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
110713558 GCTACTCGTT
*
110713568 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
110713608 CAAATGCCTTAGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
110713648 CCAATGCCTTC-GG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
110713686 CAAATGCCTTC--GA-TCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACT-TAGCCCGGTTATAGTAAC-TCGCA
110713725 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
110713749 ACATCATTCG
Statistics
Matches: 118, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
37 2 0.02
38 50 0.42
39 11 0.09
40 52 0.44
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:110713679 original size:38 final size:39
Alignment explanation
Indices: 110713568--110713749 Score: 194
Period size: 38 Copynumber: 4.6 Consensus size: 39
110713558 GCTACTCGTT
*
110713568 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
* *
110713608 CAAATGCCTTAGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTT-CGGACTTAGCCCGGATTTAGTAACTCGCA
* *
110713648 CCAATGCCTTCGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
110713686 CAAATGCCTTC-GA-TCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGACT-TAGCCCGGATTTAGTAAC-TCGCA
110713725 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
110713750 CATCATTCGA
Statistics
Matches: 120, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
37 2 0.02
38 53 0.44
39 10 0.08
40 52 0.43
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:110713743 original size:78 final size:80
Alignment explanation
Indices: 110713568--110713749 Score: 198
Period size: 78 Copynumber: 2.3 Consensus size: 80
110713558 GCTACTCGTT
* * *
110713568 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTAGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTA-CGACTTAACCCG
* *
110713632 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
110713649 CAATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTT-CGA-TCTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTACGACT-TAACCCGG
*
110713709 ATATAGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
110713725 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
110713750 CATCATTCGA
Statistics
Matches: 86, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
75 1 0.01
76 25 0.29
77 6 0.07
78 42 0.49
79 3 0.03
80 6 0.07
81 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTACGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:110717139 original size:40 final size:40
Alignment explanation
Indices: 110717088--110717184 Score: 160
Period size: 40 Copynumber: 2.4 Consensus size: 40
110717078 CTAAGACGGT
110717088 ATCGCACACTTAGTGCCTCACATAG-TCAAAGCTAGTTTAA
1 ATCGCACACTTAGTGCCTCACATAGCT-AAAGCTAGTTTAA
* *
110717128 ATCGCACACTTAATGCCTCATATAGCTAAAGCTAGTTTAA
1 ATCGCACACTTAGTGCCTCACATAGCTAAAGCTAGTTTAA
110717168 ATCGCACACTTAGTGCC
1 ATCGCACACTTAGTGCC
110717185 AAATACTATT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
40 52 0.98
41 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTCACATAGCTAAAGCTAGTTTAA
Found at i:110721403 original size:33 final size:33
Alignment explanation
Indices: 110721361--110721426 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
110721351 CATAATATCT
110721361 AAAATAGACTCAAACCATTATTTAACCAAAACA
1 AAAATAGACTCAAACCATTATTTAACCAAAACA
110721394 AAAATAGACTCAAACCATTATTTAACCAAAACA
1 AAAATAGACTCAAACCATTATTTAACCAAAACA
110721427 TACTCAAGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (33 bp):
AAAATAGACTCAAACCATTATTTAACCAAAACA
Found at i:110729451 original size:22 final size:22
Alignment explanation
Indices: 110729399--110729465 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
110729389 TTAAAGCCTT
* * *
110729399 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAA
* *
110729421 CT-ACATATGGCTCTGTGCCAAA
1 CTGA-TTATGGCTATGTGCCAAA
110729443 CTGATTATGGCTATGTGCCAAA
1 CTGATTATGGCTATGTGCCAAA
110729465 C
1 C
110729466 GTTTTTGCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAA
Found at i:110729658 original size:26 final size:27
Alignment explanation
Indices: 110729622--110729694 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
110729612 ATTCTATTAA
* *
110729622 GTGGCTTTGCCACATTATCTAT-TCTG
1 GTGGCTCTGCCACAATATCTATATCTG
*
110729648 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
110729675 GTGACTCTGTCACAATATCT
1 GTGGCTCTGCCACAATATCT
110729695 GATAACTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:110729875 original size:12 final size:12
Alignment explanation
Indices: 110729858--110729889 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
110729848 CTGTTACCTG
110729858 ATTCTGATTCTA
1 ATTCTGATTCTA
110729870 ATTCTGATTCTA
1 ATTCTGATTCTA
*
110729882 GTTCTGAT
1 ATTCTGAT
110729890 AATGTTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:110731842 original size:27 final size:27
Alignment explanation
Indices: 110731812--110731990 Score: 241
Period size: 27 Copynumber: 6.6 Consensus size: 27
110731802 TTAGTTTACC
* * *
110731812 AAATTATCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * **
110731839 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
110731866 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
110731893 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
110731920 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* **
110731947 AAATTATCAAAATTTCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
110731974 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
110731991 TCGACCTATA
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:110732002 original size:27 final size:27
Alignment explanation
Indices: 110731972--110732024 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
110731962 CCCTAGTTTG
110731972 TAAAATTACCAAAATACCCTCGACCTA
1 TAAAATTACCAAAATACCCTCGACCTA
**
110731999 TAAAATTACTGAAATACCCTCGACCT
1 TAAAATTACCAAAATACCCTCGACCT
110732025 GCCGATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.28, G:0.06, T:0.25
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGACCTA
Found at i:110732003 original size:81 final size:81
Alignment explanation
Indices: 110731837--110732017 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
110731827 CTCTGGTTTG
* *
110731837 TAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
1 TAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
*** *
110731902 AAATACCCCTGGTTTG
66 AAATACCCCTGACCTA
* ** * ** *
110731918 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATTTCCCTAGTTTGTAAAATTACCA
1 TAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
110731983 AAATA-CCCTCGACCTA
66 AAATACCCCT-GACCTA
*
110731999 TAAAATTACTGAAATACCC
1 TAAAATTACTAAAATACCC
110732018 TCGACCTGCC
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 4 0.05
81 80 0.95
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (81 bp):
TAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
AAATACCCCTGACCTA
Found at i:110732058 original size:27 final size:27
Alignment explanation
Indices: 110732027--110732257 Score: 252
Period size: 27 Copynumber: 8.6 Consensus size: 27
110732017 CTCGACCTGC
*
110732027 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* * *
110732054 TGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* *
110732081 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* * * *
110732108 CGATTAATAAAATTACCGTTTT-CCCT
1 CGATTTACAGAATTACCATTTTACCCT
* *
110732134 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
* * *
110732161 CGATTTATAGGACTA-CAGTTTTACCCT
1 CGATTTACAGAATTACCA-TTTTACCCT
*
110732188 CGATTTACAGAATTA-TAGTTTTACCCT
1 CGATTTACAGAATTACCA-TTTTACCCT
* *
110732215 CGATTTATAGATTTACCATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
*
110732242 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
110732258 TGAAATACCC
Statistics
Matches: 176, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.13
27 152 0.86
28 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCATTTTACCCT
Found at i:110732120 original size:54 final size:54
Alignment explanation
Indices: 110732027--110732257 Score: 302
Period size: 54 Copynumber: 4.3 Consensus size: 54
110732017 CTCGACCTGC
* * * *
110732027 CGATTTATAGAATTACCATTTTACCCTTGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCT
* *
110732081 CGATTTACAAAATTACCGTTTTACCCTCGATTAATAAAATTACCGTTTT-CCCT
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCT
* ** * *
110732134 CGATTTACAGAATTATCGTTTTACCCTCGATTTATAGGACTACAGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCT
** * * *
110732188 CGATTTACAGAATTATAGTTTTACCCTCGATTTATAGATTTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCT
*
110732242 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
110732258 TGAAATACCC
Statistics
Matches: 155, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 46 0.30
54 109 0.70
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCT
Found at i:110732167 original size:107 final size:108
Alignment explanation
Indices: 110732027--110732257 Score: 302
Period size: 107 Copynumber: 2.1 Consensus size: 108
110732017 CTCGACCTGC
* * * *
110732027 CGATTTATAGAATTACCATTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTACAAA
1 CGATTTACAGAATTACCATTTTACCCTCGATTTACAAAACTACAGTTTTACCCTCGATTTACAAA
* *
110732092 ATTACCGTTTTACCCTCGATTAATAAAATTACCGTTTT-CCCT
66 ATTACAGTTTTACCCTCGATTAATAAAATTACCATTTTACCCT
* * * ** *
110732134 CGATTTACAGAATTATCGTTTTACCCTCGATTTATAGGACTACAGTTTTACCCTCGATTTACAGA
1 CGATTTACAGAATTACCATTTTACCCTCGATTTACAAAACTACAGTTTTACCCTCGATTTACAAA
* * * *
110732199 ATTATAGTTTTACCCTCGATTTATAGATTTACCATTTTACCCT
66 ATTACAGTTTTACCCTCGATTAATAAAATTACCATTTTACCCT
*
110732242 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
110732258 TGAAATACCC
Statistics
Matches: 105, Mismatches: 18, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
107 87 0.83
108 18 0.17
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (108 bp):
CGATTTACAGAATTACCATTTTACCCTCGATTTACAAAACTACAGTTTTACCCTCGATTTACAAA
ATTACAGTTTTACCCTCGATTAATAAAATTACCATTTTACCCT
Found at i:110732283 original size:27 final size:27
Alignment explanation
Indices: 110732252--110732525 Score: 340
Period size: 27 Copynumber: 10.3 Consensus size: 27
110732242 CGATTTACAA
* * *
110732252 AATTACTGAAATACCCATGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
110732279 CATTACTGAAATACCCATGT-GAGGTAG
1 AATTACCGAAATACCCCTGTAG-GGTAG
*
110732306 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
110732333 AGTTACCGAAATA-CCCTGTAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
*
110732359 AGTTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
110732386 AATTACCGAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
110732412 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
110732439 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
110732466 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
110732493 AATTACAGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
110732519 AATTACC
1 AATTACC
110732526 ATTTTGCATG
Statistics
Matches: 221, Mismatches: 22, Indels: 9
0.88 0.09 0.04
Matches are distributed among these distances:
26 65 0.29
27 155 0.70
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:110732379 original size:53 final size:53
Alignment explanation
Indices: 110732252--110732524 Score: 343
Period size: 53 Copynumber: 5.1 Consensus size: 53
110732242 CGATTTACAA
* * * *
110732252 AATTACTGAAATACCCATGTAAGGTAGCATTACTGAAATACCCATGT-GAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCC-TGTAG-GGTAG
* *
110732306 AATTACTGAAATACCCCTGTAGGGTAGAGTTACCGAAATACCCTGTAGGGTAC
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAG
* *
110732359 AGTTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTA-GGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTAGGGTAG
* *
110732412 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTAGGGTAG
* * * * * * *
110732466 AATTACTAAAATACCCCTGTAGGGTGGAATTACAGAGATACCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAG
110732519 AATTAC
1 AATTAC
110732525 CATTTTGCAT
Statistics
Matches: 195, Mismatches: 21, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
53 110 0.56
54 85 0.44
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (53 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGGTAG
Found at i:110732386 original size:80 final size:79
Alignment explanation
Indices: 110732252--110732517 Score: 338
Period size: 80 Copynumber: 3.3 Consensus size: 79
110732242 CGATTTACAA
* * * *
110732252 AATTACTGAAATACCCATGTAAGGTAGCATTACTGAAATACCCATGT-GAGGTAGAATTACTGAA
1 AATTACCGAAATACCC-TGTAGGGTA-CATTACCGAAATACCCCTGTAG-GGTAGAATTACTGAA
110732316 ATACCCCTGTAGGGTAG
63 ATACCCCTGTAGGGTAG
* *
110732333 AGTTACCGAAATACCCTGTAGGGTACAGTTACCGAAATACCCCTGTAGGGTAGAATTACCGAAAT
1 AATTACCGAAATACCCTGTAGGGTACA-TTACCGAAATACCCCTGTAGGGTAGAATTACTGAAAT
110732398 ACCCCTGTA-GGTAG
65 ACCCCTGTAGGGTAG
* * *
110732412 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAA
1 AATTACCGAAATA-CCCTGTAGGGTA-CATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAA
*
110732477 TACCCCTGTAGGGTGG
64 TACCCCTGTAGGGTAG
* * * *
110732493 AATTACAGAGATACCTTGTGGGGTA
1 AATTACCGAAATACCCTGTAGGGTA
110732518 AAATTACCAT
Statistics
Matches: 163, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
79 18 0.11
80 115 0.71
81 30 0.18
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (79 bp):
AATTACCGAAATACCCTGTAGGGTACATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATA
CCCCTGTAGGGTAG
Found at i:110732795 original size:22 final size:22
Alignment explanation
Indices: 110732743--110732807 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
110732733 TTAAAGCCTT
* *
110732743 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
110732765 CT-ACGTATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
110732787 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110732808 ATGTATTGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110733001 original size:26 final size:27
Alignment explanation
Indices: 110732965--110733037 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
110732955 ATTCTGTGAA
* *
110732965 GTGGCTTTGCCACATTATCTAT-TCTG
1 GTGGCTCTGCCACAATATCTATATCTG
*
110732991 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
110733018 GTGACTCTGTCACAATATCT
1 GTGGCTCTGCCACAATATCT
110733038 GATAATTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 19 0.46
27 22 0.54
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:110733225 original size:31 final size:31
Alignment explanation
Indices: 110733183--110733285 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
110733173 ACATTCTAAT
*
110733183 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTAATACTGATTCTGA
* *
110733214 TTTTGAGTCTGTTACCTAATACTGATTCTGC
1 TTTTGATTCTGTTACCTAATACTGATTCTGA
* * * *
110733245 TTCTGATTCTGTCACCTAATTCTGATTTTGA
1 TTTTGATTCTGTTACCTAATACTGATTCTGA
*
110733276 TTCTGATTCT
1 TTTTGATTCT
110733286 AGTTCTGATA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTAATACTGATTCTGA
Found at i:110735246 original size:27 final size:26
Alignment explanation
Indices: 110735216--110735384 Score: 187
Period size: 27 Copynumber: 6.3 Consensus size: 26
110735206 TTAGTTTACC
*
110735216 AAATTATCAAAATACCCCTGGTTTCTA
1 AAATTA-CAAAATACCCCTGGTTTGTA
* * *
110735243 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTAC-AAAATACCCCTGGTTTGTA
*
110735270 AAATTACCAAAAATACCCCTAGTTTGTA
1 AAATTA-C-AAAATACCCCTGGTTTGTA
110735298 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTA-CAAAATACCCCTGGTTTGTA
110735325 AAATTATCAAAATACCCCTAGG-TTGTA
1 AAATTA-CAAAATACCCCT-GGTTTGTA
* * * *
110735352 AAATTACCAAATACCCCTGATTTTTG
1 AAATTACAAAATACCCCTGGTTTGTA
110735378 AAATTAC
1 AAATTAC
110735385 TGAAATAGGC
Statistics
Matches: 126, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
25 1 0.01
26 22 0.17
27 75 0.60
28 28 0.22
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (26 bp):
AAATTACAAAATACCCCTGGTTTGTA
Found at i:110735281 original size:54 final size:53
Alignment explanation
Indices: 110735206--110735367 Score: 200
Period size: 55 Copynumber: 3.0 Consensus size: 53
110735196 TTAGAATACT
** *
110735206 TTAGTTTACCAAATTATCAAAATACCCCTGGTTTCTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTATCAAAATACCCCTGGTTTGTAAAATTAC-AAAATACCC
* *
110735260 TTAGTTTATAAAATTACCAAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTATC-AAAATACCCCTGGTTTGTAAAATTA-CAAAATACCC
* * * *
110735315 CTGGTTTGTAAAATTATCAAAATACCCCTAGG-TTGTAAAATTACCAAATACCC
1 TTAGTTTATAAAATTATCAAAATACCCCT-GGTTTGTAAAATTACAAAATACCC
110735368 CTGATTTTTG
Statistics
Matches: 94, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
53 9 0.10
54 37 0.39
55 47 0.50
56 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TTAGTTTATAAAATTATCAAAATACCCCTGGTTTGTAAAATTACAAAATACCC
Found at i:110735354 original size:82 final size:80
Alignment explanation
Indices: 110735216--110735369 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 80
110735206 TTAGTTTACC
* * *
110735216 AAATTATCAAAATACCCCTGGTTTCTAAAATTACTAAAATACCCTTAGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTCTAAAATTACTAAAATACCCCTAGGTTATAAAATTACC--A
110735281 AATACCCCTAGTTTGTA
64 AATACCCCTAGTTTGTA
* *
110735298 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAGGTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTCTAAAATTACT-AAAATACCCCTAGGTTATAAAATTACCAA
110735362 ATACCCCT
65 ATACCCCT
110735370 GATTTTTGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 10 0.15
81 1 0.02
82 55 0.83
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTCTAAAATTACTAAAATACCCCTAGGTTATAAAATTACCAAA
TACCCCTAGTTTGTA
Found at i:110735408 original size:27 final size:27
Alignment explanation
Indices: 110735378--110735465 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
110735368 CTGATTTTTG
**
110735378 AAATTACTGAAATAGGCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
110735405 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* * * * *
110735432 AAATTATTAAAATACCATCAACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
110735459 AAATTAC
1 AAATTAC
110735466 CAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:110735491 original size:54 final size:52
Alignment explanation
Indices: 110735293--110735492 Score: 157
Period size: 54 Copynumber: 3.7 Consensus size: 52
110735283 TACCCCTAGT
* * * * **
110735293 TTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGG
1 TTGTAAAATTACC-AAATACCCCCGATTTGTAAAATTATTAAAATACCTC-AAC
* * * * * * *
110735347 TTGTAAAATTACCAAATACCCCTGATTTTTGAAATTACTGAAATAGGCTCGAC
1 TTGTAAAATTACCAAATACCCCCGATTTGTAAAATTATTAAAATA-CCTCAAC
* ** * **
110735400 CTGTAAAATTATTGAAATACCCTCGACCTGTAAAATTATTAAAATACCATCAAC
1 TTGTAAAATTA-CCAAATACCCCCGATTTGTAAAATTATTAAAATACC-TCAAC
* *
110735454 TTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTAT
1 TTGTAAAATTACCAAA-TACCCCCGATTTGTAAAATTAT
110735493 CGTTTTTCCC
Statistics
Matches: 110, Mismatches: 32, Indels: 8
0.73 0.21 0.05
Matches are distributed among these distances:
53 40 0.36
54 70 0.64
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (52 bp):
TTGTAAAATTACCAAATACCCCCGATTTGTAAAATTATTAAAATACCTCAAC
Found at i:110735509 original size:27 final size:27
Alignment explanation
Indices: 110735471--110735618 Score: 206
Period size: 27 Copynumber: 5.5 Consensus size: 27
110735461 ATTACCAAAG
*
110735471 TACCCCCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
* * * * *
110735498 TTCCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTATCGTTT
* * *
110735525 TACCCTTGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
110735552 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
110735579 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
110735606 TACCCTCGATTTA
1 TACCCTCGATTTA
110735619 CAAAATTACT
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTATCGTTT
Found at i:110735515 original size:54 final size:54
Alignment explanation
Indices: 110735458--110735637 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
110735448 ATCAACTTGT
* * * * *
110735458 AAAATTACCAAAGTACCCCCGATTTATAGAATTATCGTTTTTCCCTCAATTTAT
1 AAAATTACCAAATTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTAC
** * * *
110735512 AAAATTACCATTTTACCCTTGATTTATAAAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTAC
* * ***
110735566 AGAATTATCGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTAC
* *
110735620 AAAATTACTAAAATACCC
1 AAAATTACCAAATTACCC
110735638 ATGTAAGGTA
Statistics
Matches: 103, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTAC
Found at i:110735542 original size:81 final size:81
Alignment explanation
Indices: 110735457--110735637 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
110735447 CATCAACTTG
* * *
110735457 TAAAATTACCAAAGTACCCCCGATTTATAGAATTATCGTTTTTCCCTCAATTTATAAAATTACCA
1 TAAAATTACCAAAATACCCCCGATTTACAGAATTATCGTTTTACCCTCAATTTATAAAATTACCA
*
110735522 TTTTACCCTTGATTTA
66 TTTTACCCTCGATTTA
**** * * * * *
110735538 TAAAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTATCG
1 TAAAATTACCAAAATACCCCCGATTTACAGAATTATCGTTTTACCCTCAATTTATAAAATTACCA
110735603 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* *
110735619 CAAAATTACTAAAATACCC
1 TAAAATTACCAAAATACCC
110735638 ATGTAAGGTA
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCCGATTTACAGAATTATCGTTTTACCCTCAATTTATAAAATTACCA
TTTTACCCTCGATTTA
Found at i:110735652 original size:27 final size:27
Alignment explanation
Indices: 110735630--110735851 Score: 221
Period size: 27 Copynumber: 8.2 Consensus size: 27
110735620 AAAATTACTA
*
110735630 AAATACCCATGTAAGGTAGAATTACCG
1 AAATACCCATGTAGGGTAGAATTACCG
* * *
110735657 AAATACCCATGTAAGGTAGAACTACCA
1 AAATACCCATGTAGGGTAGAATTACCG
* *
110735684 AAATACCCTTGTAGGGTTGAATTACCG
1 AAATACCCATGTAGGGTAGAATTACCG
* *
110735711 GAATA-CCACTGTAGGGTAGAATTACTG
1 AAATACCCA-TGTAGGGTAGAATTACCG
* * *
110735738 GAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCATGTAGGGTAGAATTACCG
* * *
110735765 GAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCATGTAGGGTAGAATTACCG
* * * **
110735792 AAATACCCCTGTAGGATAGTATTACTA
1 AAATACCCATGTAGGGTAGAATTACCG
* * *
110735819 AAATACCCCTTTAGGGTGGAATTACCG
1 AAATACCCATGTAGGGTAGAATTACCG
*
110735846 AGATAC
1 AAATAC
110735852 ATTGTGGGGT
Statistics
Matches: 164, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 160 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCATGTAGGGTAGAATTACCG
Found at i:110735827 original size:81 final size:80
Alignment explanation
Indices: 110735630--110735851 Score: 246
Period size: 81 Copynumber: 2.7 Consensus size: 80
110735620 AAAATTACTA
* * * * * * * *
110735630 AAATACCCATGTAAGGTAGAATTACCGAAATACCCATGTAAGGTAGAACTACCAAAATACCCTTG
1 AAATACCCCTGT-AGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
*
110735695 TAGGGTTGAATTACCG
65 TAGGGTAGAATTACCG
* * * *
110735711 GAATACCACTGTAGGGTAGAATTACTGGAATACCCCTATAGGGTAGAATTACCGGAATACCCCTG
1 AAATACCCCTGTA-GGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
*
110735776 TAGGGTAGAATTATCG
65 TAGGGTAGAATTACCG
* * * * *
110735792 AAATACCCCTGTAGGATAGTATTACTAAAATACCCCTTTAGGGTGGAATTACCGAGATAC
1 AAATACCCCTGTAGG-TAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATAC
110735852 ATTGTGGGGT
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 3 0.03
81 113 0.97
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (80 bp):
AAATACCCCTGTAGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGT
AGGGTAGAATTACCG
Found at i:110736347 original size:22 final size:22
Alignment explanation
Indices: 110736295--110736359 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
110736285 TTAAAGCCTT
* *
110736295 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
110736317 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
110736339 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110736360 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110736555 original size:26 final size:27
Alignment explanation
Indices: 110736519--110736591 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
110736509 TTCTGTTAAG
* *
110736519 TGGCTTTGCCACATTATCTGT-TCTGC
1 TGGCTCTGCCACAATATCTGTATCTGC
*
110736545 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTCTGCCACAATATCTGTATCTGC
* * *
110736572 TGACTCTGTCACAGTATCTG
1 TGGCTCTGCCACAATATCTG
110736592 ATAACTGAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (27 bp):
TGGCTCTGCCACAATATCTGTATCTGC
Found at i:110736766 original size:6 final size:6
Alignment explanation
Indices: 110736728--110736838 Score: 75
Period size: 6 Copynumber: 17.8 Consensus size: 6
110736718 TTGCATTCAC
* * *
110736728 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
110736777 TTTACCTG ATACTG ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
110736828 ATTCTG ATTCT
1 ATTCTG ATTCT
110736839 ATCGACCTGT
Statistics
Matches: 81, Mismatches: 14, Indels: 20
0.70 0.12 0.17
Matches are distributed among these distances:
5 6 0.07
6 59 0.73
7 13 0.16
8 3 0.04
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:110736792 original size:37 final size:31
Alignment explanation
Indices: 110736728--110736838 Score: 195
Period size: 31 Copynumber: 3.5 Consensus size: 31
110736718 TTGCATTCAC
110736728 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
110736760 ATTCTGATTTTGATTCTTTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
110736791 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
110736822 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
110736839 ATCGACCTGT
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
31 69 0.91
32 7 0.09
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:110736938 original size:27 final size:27
Alignment explanation
Indices: 110736876--110737126 Score: 279
Period size: 27 Copynumber: 9.3 Consensus size: 27
110736866 CTCAACTAGT
** * *
110736876 AAAATTACCAAATTACCCCCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* * *
110736903 AGAACTACCATTTTACCCTCGATTTAG
1 AAAATTACCATTTTACCCTCGATTTAC
*
110736930 AAAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
* * *
110736957 AAAATTACCATTTTACCCTCGACTAAT
1 AAAATTACCATTTTACCCTCGATTTAC
*
110736984 AAAATTA-CAGTTTTACCCTTGATTTAC
1 AAAATTACCA-TTTTACCCTCGATTTAC
* * *
110737011 AGAATTATCATTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
* * *
110737038 AGAACTACCGTTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
* * * *
110737065 AGAATTATCGTTTTACCCTCGATTTAT
1 AAAATTACCATTTTACCCTCGATTTAC
*
110737092 AAAATTTCCATTTTACCCTCGATTTAC
1 AAAATTACCATTTTACCCTCGATTTAC
110737119 AAAATTAC
1 AAAATTAC
110737127 TCAAATACCC
Statistics
Matches: 188, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 184 0.98
28 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (27 bp):
AAAATTACCATTTTACCCTCGATTTAC
Found at i:110736946 original size:54 final size:54
Alignment explanation
Indices: 110736888--110737126 Score: 325
Period size: 54 Copynumber: 4.4 Consensus size: 54
110736878 AATTACCAAA
* * * *
110736888 TTACCCCCGATTTATAGAACTACCATTTTACCCTCGATTTAGAAAATTACCGTT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCGTT
* * * *
110736942 TTACCCTCGATTTACAAAATTACCATTTTACCCTCGACTAATAAAATTACAGTT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCGTT
* * * *
110736996 TTACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTATAGAACTACCGTT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCGTT
* * * *
110737050 TTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTTCCATT
1 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCGTT
*
110737104 TTACCCTCGATTTACAAAATTAC
1 TTACCCTCGATTTACAGAATTAC
110737127 TCAAATACCC
Statistics
Matches: 161, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 161 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (54 bp):
TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCGTT
Found at i:110737151 original size:27 final size:27
Alignment explanation
Indices: 110737121--110737330 Score: 271
Period size: 27 Copynumber: 7.8 Consensus size: 27
110737111 CGATTTACAA
*
110737121 AATTACTC-AAATACCCATGTAAGGTAG
1 AATTAC-CGAAATACCCCTGTAAGGTAG
* * *
110737148 AATTACTGAAATACCCATGTGAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
110737175 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
110737202 AGTTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
110737229 AATTACCAAAATTCCCCTGTAGGGT-G
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
110737255 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
110737282 AATTACCGAAATACCGCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
110737309 AATTACTAAAATACCCCTGTAA
1 AATTACCGAAATACCCCTGTAA
110737331 CGTGGAAATA
Statistics
Matches: 162, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.14
27 139 0.86
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:110737273 original size:80 final size:82
Alignment explanation
Indices: 110737121--110737329 Score: 291
Period size: 80 Copynumber: 2.6 Consensus size: 82
110737111 CGATTTACAA
* * *
110737121 AATTACTC-AAATACCCATGTAAGGTAGAATTACTGAAATACCCATGT-GAGGTAGAATTACCGA
1 AATTAC-CGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGAGGTAGAATTACCGA
110737184 AATACCCCTGTAAGGTAG
65 AATACCCCTGTAAGGTAG
* * * * *
110737202 AGTTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATTCCCCTGTAG-GGT-GAATTACCGGA
1 AATTACCGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGAGGTAGAATTACCGAA
*
110737265 ATACCCCTGTAGGGTAG
66 ATACCCCTGTAAGGTAG
*
110737282 AATTACCGAAATACCGCTGTAAGGTAGAATTACTAAAATACCCCTGTA
1 AATTACCGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTA
110737330 ACGTGGAAAT
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 70 0.62
81 41 0.37
82 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (82 bp):
AATTACCGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGAGGTAGAATTACCGAA
ATACCCCTGTAAGGTAG
Found at i:110737356 original size:80 final size:78
Alignment explanation
Indices: 110737121--110737368 Score: 241
Period size: 80 Copynumber: 3.1 Consensus size: 78
110737111 CGATTTACAA
* * *
110737121 AATTACTC-AAATACCCATGTAAGGTAGAATTACTGAAATACCCATGTGAGGTAGAATTACCGAA
1 AATTAC-CGAAATACCC-TGTAAGGTAGAATTACTAAAATACCCCTGTAAGGT-GAATTA-C-AA
*
110737185 -ATACCCCTGTAAGGTAG
61 GATACCCCTGTAGGGTAG
* * * * * **
110737202 AGTTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATTCCCCTGTAGGGTGAATTACCGGAAT
1 AATTACCGAAATA-CCCTGTAAGGTAGAATTACTAAAATACCCCTGTAAGGTGAATTACAAG-AT
110737267 ACCCCTGTAGGGTAG
64 ACCCCTGTAGGGTAG
* *
110737282 AATTACCGAAATACCGCTGTAAGGTAGAATTACTAAAATACCCCTGTAACGTGGAAATACAAAGA
1 AATTACCGAAATACC-CTGTAAGGTAGAATTACTAAAATACCCCTGTAAGGT-GAATTAC-AAGA
** *
110737347 TA-CTTTGTAGGGTAA
63 TACCCCTGTAGGGTAG
110737362 AATTACC
1 AATTACC
110737369 ATTTTGCCGC
Statistics
Matches: 137, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
79 3 0.02
80 83 0.61
81 47 0.34
82 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (78 bp):
AATTACCGAAATACCCTGTAAGGTAGAATTACTAAAATACCCCTGTAAGGTGAATTACAAGATAC
CCCTGTAGGGTAG
Found at i:110737846 original size:22 final size:22
Alignment explanation
Indices: 110737794--110737858 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
110737784 TTAAAGCCTT
* *
110737794 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
110737816 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
110737838 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110737859 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110738053 original size:26 final size:27
Alignment explanation
Indices: 110738017--110738090 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
110738007 ATTCTATTAA
* *
110738017 GTGGCTGTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
110738043 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
110738070 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
110738091 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:110738265 original size:6 final size:6
Alignment explanation
Indices: 110738250--110738338 Score: 56
Period size: 6 Copynumber: 14.5 Consensus size: 6
110738240 ATTCTGTTAC
* * * *
110738250 CTGATA CTGATT CTGATT TTGATT CTG-TT ACTTGATA CTGATT GTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT -C-TGATT CTGATT CTGATT
* * * *
110738299 TTGATT CTG-TT ACCTGATA CTGATT TTGAAT CTGATT CTG
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTG
110738339 TCATCTAATA
Statistics
Matches: 63, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
5 4 0.06
6 51 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:110738272 original size:31 final size:31
Alignment explanation
Indices: 110738235--110738363 Score: 177
Period size: 31 Copynumber: 4.2 Consensus size: 31
110738225 ACATTTTGAT
110738235 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* *
110738266 TTTTGATTCTGTTACTTGATACTGATTGTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
110738297 TTTTGATTCTGTTACCTGATACTGATTTTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * * * * *
110738328 ATCTGATTCTGTCATCTAATAGTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
110738359 TTTTG
1 TTTTG
110738364 TAACACCCTG
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 85 1.00
ACGTcount: A:0.20, C:0.13, G:0.17, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:110738291 original size:19 final size:19
Alignment explanation
Indices: 110738238--110738292 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
110738228 TTTTGATTTT
*
110738238 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACTTGATAC
110738257 TGATTCTG--A-TT--T--
1 TGATTCTGTTACTTGATAC
110738269 TGATTCTGTTACTTGATAC
1 TGATTCTGTTACTTGATAC
110738288 TGATT
1 TGATT
110738293 GTGATTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 14
0.65 0.02 0.33
Matches are distributed among these distances:
12 8 0.29
14 2 0.07
15 2 0.07
16 1 0.04
17 2 0.07
19 13 0.46
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (19 bp):
TGATTCTGTTACTTGATAC
Found at i:110739212 original size:27 final size:27
Alignment explanation
Indices: 110739182--110739405 Score: 177
Period size: 27 Copynumber: 8.3 Consensus size: 27
110739172 TTAGTTTACC
* *
110739182 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
110739209 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* ** *
110739236 AAATTATCAAAATACCCCCAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
110739263 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* ** *
110739290 AAATTACTAAAATA-CCCTCGACCTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
** **
110739317 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** * *
110739344 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
110739371 AAATTACCAAAGTACCCC-GATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
110739397 GAATTACCA
1 AAATTACCA
110739406 TTTTACCATT
Statistics
Matches: 166, Mismatches: 29, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 17 0.10
27 146 0.88
28 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:110739247 original size:54 final size:54
Alignment explanation
Indices: 110739182--110739402 Score: 205
Period size: 54 Copynumber: 4.1 Consensus size: 54
110739172 TTAGTTTACC
*** * *
110739182 AAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
*
110739236 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
* * ** ** **
110739290 AAATTA-CTAAAATACCCTCGACCTATAAAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTATC-AAAATACCCCCAATTTATAAAATTACCAAAATACCCCT-GATTTGTA
** * * * * *
110739344 AAATTATTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCC-GATTTATA
1 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
*
110739397 GAATTA
1 AAATTA
110739403 CCATTTTACC
Statistics
Matches: 136, Mismatches: 27, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
53 15 0.11
54 118 0.87
55 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
Found at i:110739428 original size:27 final size:27
Alignment explanation
Indices: 110739383--110739618 Score: 287
Period size: 27 Copynumber: 8.8 Consensus size: 27
110739373 ATTACCAAAG
* * *
110739383 TACCC-CGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
110739409 TACCATTGATTTACAAAATTACCGTGT
1 TACCCTCGATTTACAAAATTACCGTTT
110739436 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
110739463 TACCCTCGATTAATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
110739490 T-CCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
110739516 TACCCTCGATTTATAAAACTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* **
110739543 TACCCTCGATTTACAGAATTATAGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
110739570 TACCCTCGATTTATAGAATTACCGTTG
1 TACCCTCGATTTACAAAATTACCGTTT
*
110739597 TACACTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
110739619 TAAAATACCC
Statistics
Matches: 177, Mismatches: 31, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
26 26 0.15
27 151 0.85
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:110739441 original size:80 final size:80
Alignment explanation
Indices: 110739356--110739522 Score: 174
Period size: 80 Copynumber: 2.1 Consensus size: 80
110739346 ATTATTGAAA
** * * *
110739356 TACCCTCAACTTGTAAAATTACCAAAGTACCC-CGATTTATAGAATTACCATTTTACCATTGATT
1 TACCCTCAACTTACAAAATTACCAAAGTACCCTCGATTAATAAAATTACCATTTT-CCATCGATT
110739420 TACAAAATTACCGTGT
65 TACAAAATTACCGTGT
* * **** * *
110739436 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTAATAAAATTACCGTTTTCCCTCGATTT
1 TACCCTCAACTTACAAAATTACCAAAGTACCCTCGATTAATAAAATTACCATTTTCCATCGATTT
* * *
110739501 ACAGAATTATCGTTT
66 ACAAAATTACCGTGT
110739516 TACCCTC
1 TACCCTC
110739523 GATTTATAAA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 51 0.73
81 19 0.27
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (80 bp):
TACCCTCAACTTACAAAATTACCAAAGTACCCTCGATTAATAAAATTACCATTTTCCATCGATTT
ACAAAATTACCGTGT
Found at i:110739467 original size:107 final size:107
Alignment explanation
Indices: 110739356--110739618 Score: 269
Period size: 107 Copynumber: 2.4 Consensus size: 107
110739346 ATTATTGAAA
* * *
110739356 TACCCTCAACTT-GTAAAATTACCAAAGTACCC-CGATTTATAGAATTACCATTTTACCATTGAT
1 TACCCTCAA-TTAATAAAATTACC-AAGTACCCTCGATTTACAGAATTACCATTTTACCATCGAT
* *
110739419 TTACAAAATTACCGTGTTACCCTCGATTTACAAAATTACCGTTT
64 TTACAAAACTACCGTGTTACCCTCGATTTACAAAATTACAGTTT
* *** * * * *
110739463 TACCCTCGATTAATAAAATTACCGTTTTCCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
1 TACCCTCAATTAATAAAATTACCAAGTACCCTCGATTTACAGAATTACCATTTTACCATCGATTT
* * * *
110739528 ATAAAACTACCGTTTTACCCTCGATTTACAGAATTATAGTTT
66 ACAAAACTACCGTGTTACCCTCGATTTACAAAATTACAGTTT
* * * ** * *
110739570 TACCCTCGATTTATAGAATTACCGTTGTACACTCGATTTACAAAATTAC
1 TACCCTCAATTAATAAAATTACC-AAGTACCCTCGATTTACAGAATTAC
110739619 TAAAATACCC
Statistics
Matches: 128, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
106 6 0.05
107 103 0.80
108 19 0.15
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (107 bp):
TACCCTCAATTAATAAAATTACCAAGTACCCTCGATTTACAGAATTACCATTTTACCATCGATTT
ACAAAACTACCGTGTTACCCTCGATTTACAAAATTACAGTTT
Found at i:110739644 original size:27 final size:27
Alignment explanation
Indices: 110739621--110739861 Score: 313
Period size: 27 Copynumber: 9.0 Consensus size: 27
110739611 AAAATTACTA
* * *
110739621 AAATACCCATGTAAGGTAGCATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110739648 AAATACCCATGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110739675 AAATACCTCTGTAGGGTAGAGTTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
110739702 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
110739729 AAATACCTCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110739756 GAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
110739783 AAATACCCCTGTAGGGTAGAATTACAA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110739810 AAATACCCCTATAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
110739837 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
110739862 ATTTTGCCCC
Statistics
Matches: 190, Mismatches: 24, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
26 15 0.08
27 175 0.92
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:110740312 original size:22 final size:22
Alignment explanation
Indices: 110740260--110740324 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
110740250 TTAAAGCCTT
* *
110740260 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
110740282 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
110740304 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110740325 ACGTTTTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110740726 original size:19 final size:18
Alignment explanation
Indices: 110740704--110740831 Score: 100
Period size: 19 Copynumber: 6.9 Consensus size: 18
110740694 TTCTGATTTT
*
110740704 TGATTCTGTTACCTGATAC
1 TGATTCTGTTA-CTGATTC
*
110740723 TGATTCTGATT-TTGATTC
1 TGATTCTG-TTACTGATTC
* *
110740741 TGTTTCCTGATACTGATTC
1 TGATT-CTGTTACTGATTC
* *
110740760 TGATTCTGTCACCTAATTC
1 TGATTCTGTTA-CTGATTC
* *
110740779 TGATTCTGTCACCTAATTC
1 TGATTCTGTTA-CTGATTC
110740798 TGATTCTGATT-CTGATTC
1 TGATTCTG-TTACTGATTC
110740816 TGATTCTAGTT-CTGAT
1 TGATTCT-GTTACTGAT
110740832 AATGTTTCTT
Statistics
Matches: 92, Mismatches: 11, Indels: 13
0.79 0.09 0.11
Matches are distributed among these distances:
18 34 0.37
19 55 0.60
20 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.47
Consensus pattern (18 bp):
TGATTCTGTTACTGATTC
Found at i:110740731 original size:6 final size:6
Alignment explanation
Indices: 110740693--110740831 Score: 88
Period size: 6 Copynumber: 22.3 Consensus size: 6
110740683 TTGCATTCAC
* * *
110740693 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
110740743 TTTCCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG -TCACCTA
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG AT--TCTG
110740794 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
110740832 AATGTTTCTT
Statistics
Matches: 102, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
5 5 0.05
6 77 0.75
7 17 0.17
8 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:110740739 original size:31 final size:31
Alignment explanation
Indices: 110740693--110740764 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
110740683 TTGCATTCAC
110740693 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
110740725 ATTCTGATTTTGATTCTGTTTCCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
110740756 ATTCTGATT
1 ATTCTGATT
110740765 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:110740750 original size:25 final size:25
Alignment explanation
Indices: 110740722--110740811 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
110740712 TTACCTGATA
* **
110740722 CTGATTCTGATTTTGATTCTGTTTC
1 CTGATTCTGATTCTGATTCTGTCAC
*
110740747 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
110740772 CT-A-----ATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
110740791 CTAATTCTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
110740812 ATTCTGATTC
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
19 18 0.33
20 1 0.02
24 1 0.02
25 35 0.64
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:110743316 original size:27 final size:27
Alignment explanation
Indices: 110743286--110743510 Score: 177
Period size: 27 Copynumber: 8.3 Consensus size: 27
110743276 TTAGTTTACC
* *
110743286 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
110743313 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* ** *
110743340 AAATTATCAAAATACCCCCAATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
110743367 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* ** *
110743394 AAATTACTAAAATA-CCCTCGACCTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
** **
110743421 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** * *
110743448 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
110743475 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
110743502 GAATTACCA
1 AAATTACCA
110743511 TTTTACCATT
Statistics
Matches: 166, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.02
27 159 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:110743351 original size:54 final size:54
Alignment explanation
Indices: 110743286--110743507 Score: 205
Period size: 54 Copynumber: 4.1 Consensus size: 54
110743276 TTAGTTTACC
*** * *
110743286 AAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
*
110743340 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
* * ** ** **
110743394 AAATTA-CTAAAATACCCTCGACCTATAAAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTATC-AAAATACCCCCAATTTATAAAATTACCAAAATACCCCT-GATTTGTA
** * * * * * *
110743448 AAATTATTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTATA
1 AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
*
110743502 GAATTA
1 AAATTA
110743508 CCATTTTACC
Statistics
Matches: 136, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
53 5 0.04
54 128 0.94
55 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTATCAAAATACCCCCAATTTATAAAATTACCAAAATACCCCTGATTTGTA
Found at i:110743517 original size:27 final size:27
Alignment explanation
Indices: 110743487--110743723 Score: 287
Period size: 27 Copynumber: 8.8 Consensus size: 27
110743477 ATTACCAAAG
* * * *
110743487 TACCCCCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
110743514 TACCATTGATTTACAAAATTACCGTGT
1 TACCCTCGATTTACAAAATTACCGTTT
110743541 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
110743568 TACCCTCGATTAATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
110743595 T-CCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
110743621 TACCCTCGATTTATAAAACTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* **
110743648 TACCCTCGATTTACAGAATTATAGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
110743675 TACCCTCGATTTATAGAATTACCGTTG
1 TACCCTCGATTTACAAAATTACCGTTT
*
110743702 TACACTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
110743724 TAAAATACCC
Statistics
Matches: 177, Mismatches: 32, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.12
27 155 0.88
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:110743645 original size:107 final size:108
Alignment explanation
Indices: 110743493--110743723 Score: 311
Period size: 107 Copynumber: 2.1 Consensus size: 108
110743483 AAAGTACCCC
* * *
110743493 CGATTTATAGAATTACCATTTTACCATTGATTTACAAAATTACCGTGTTACCCTCGATTTACAAA
1 CGATTTACAGAATTACCATTTTACCATCGATTTACAAAACTACCGTGTTACCCTCGATTTACAAA
* * *
110743558 ATTACCGTTTTACCCTCGATTAATAAAATTACCGTT-TTCCCT
66 ATTACAGTTTTACCCTCGATTAATAAAATTACCGTTGTACACT
* * * * * *
110743600 CGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAACTACCGTTTTACCCTCGATTTACAGA
1 CGATTTACAGAATTACCATTTTACCATCGATTTACAAAACTACCGTGTTACCCTCGATTTACAAA
* * *
110743665 ATTATAGTTTTACCCTCGATTTATAGAATTACCGTTGTACACT
66 ATTACAGTTTTACCCTCGATTAATAAAATTACCGTTGTACACT
*
110743708 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
110743724 TAAAATACCC
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 88 0.83
108 18 0.17
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.38
Consensus pattern (108 bp):
CGATTTACAGAATTACCATTTTACCATCGATTTACAAAACTACCGTGTTACCCTCGATTTACAAA
ATTACAGTTTTACCCTCGATTAATAAAATTACCGTTGTACACT
Found at i:110743749 original size:27 final size:27
Alignment explanation
Indices: 110743726--110743966 Score: 313
Period size: 27 Copynumber: 9.0 Consensus size: 27
110743716 AAAATTACTA
* * *
110743726 AAATACCCATGTAAGGTAGCATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110743753 AAATACCCATGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110743780 AAATACCTCTGTAGGGTAGAGTTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
110743807 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
110743834 AAATACCTCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110743861 GAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
110743888 AAATACCCCTGTAGGGTAGAATTACAA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
110743915 AAATACCCCTATAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
110743942 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
110743967 ATTTTGCCCC
Statistics
Matches: 190, Mismatches: 24, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
26 15 0.08
27 175 0.92
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:110744417 original size:22 final size:22
Alignment explanation
Indices: 110744365--110744429 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
110744355 TTAAAGCCTT
* *
110744365 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
110744387 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
110744409 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110744430 ACGTTTTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110744836 original size:6 final size:6
Alignment explanation
Indices: 110744798--110744917 Score: 93
Period size: 6 Copynumber: 19.3 Consensus size: 6
110744788 TTGCATTCAC
* * *
110744798 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
110744848 TTTCCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
110744898 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
110744918 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.04
6 69 0.77
7 15 0.17
8 2 0.02
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:110744844 original size:31 final size:31
Alignment explanation
Indices: 110744798--110744869 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
110744788 TTGCATTCAC
110744798 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
110744830 ATTCTGATTTTGATTCTGTTTCCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
110744861 ATTCTGATT
1 ATTCTGATT
110744870 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:110744855 original size:25 final size:25
Alignment explanation
Indices: 110744827--110744917 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
110744817 TTACCTGATA
*
110744827 CTGATTCTGATTTTGATTCTGTTTC
1 CTGATTCTGATTCTGATTCTGTTTC
* **
110744852 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTTTC
* *
110744877 CTAATTCTGATTCTGATTCTGATT-
1 CTGATTCTGATTCTGATTCTGTTTC
110744901 CTGATTCT-AGTTCTGAT
1 CTGATTCTGA-TTCTGAT
110744918 AATGTTTCTT
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
23 1 0.02
24 14 0.25
25 40 0.73
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTTTC
Found at i:110746874 original size:27 final size:27
Alignment explanation
Indices: 110746844--110747022 Score: 250
Period size: 27 Copynumber: 6.6 Consensus size: 27
110746834 TTAGTTTACC
*
110746844 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
110746871 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
110746898 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
110746925 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
110746952 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
110746979 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
110747006 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
110747023 TTGACCTGTA
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:110746981 original size:81 final size:81
Alignment explanation
Indices: 110746844--110747106 Score: 255
Period size: 81 Copynumber: 3.2 Consensus size: 81
110746834 TTAGTTTACC
* ** * *
110746844 AAATTATCAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCTTTGGTTTATAAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAA
110746908 AATACCCCTAGTTTGTA
65 AATACCCCTAGTTTGTA
110746925 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
110746990 ATACCCCT-GATTTGTG
66 ATACCCCTAG-TTTGTA
** * *** ** * ** ***
110747006 AAATTACTGAAATACCCTTGACCTGTAAAATTATTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAA
**
110747070 AATA-CCCTCAACTTGTA
65 AATACCCCT-AGTTTGTA
*
110747087 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
110747107 ATTTATAGAA
Statistics
Matches: 150, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
80 10 0.07
81 139 0.93
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTAGTTTGTA
Found at i:110747004 original size:54 final size:54
Alignment explanation
Indices: 110746844--110747119 Score: 263
Period size: 54 Copynumber: 5.1 Consensus size: 54
110746834 TTAGTTTACC
* * ** * *
110746844 AAATTATCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTGGTTTATA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
* *
110746898 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
*
110746952 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * ** *** **
110747006 AAATTA-CTGAAATA-CCCTTGACCTGTAAAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTATC-AAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCT-GATTTGTA
** ** * *
110747060 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCCCTGATTTATA
1 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
*
110747114 GAATTA
1 AAATTA
110747120 CCATTTTACC
Statistics
Matches: 185, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
53 10 0.05
54 171 0.92
55 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
Done.