Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 361 of 770
Found at i:110747036 original size:27 final size:27
Alignment explanation
Indices: 110746975--110747093 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
110746965 ACCCCTAGTT
** **
110746975 TGTAAAATTACCAAAATACCC-CTGATT
1 TGTAAAATTACTGAAATACCCTC-GACC
* *
110747002 TGTGAAATTACTGAAATACCCTTGACC
1 TGTAAAATTACTGAAATACCCTCGACC
*
110747029 TGTAAAATTATTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCTCGACC
* * *
110747056 TGTAAAATTATTGAAATACCCTCAACT
1 TGTAAAATTACTGAAATACCCTCGACC
110747083 TGTAAAATTAC
1 TGTAAAATTAC
110747094 CAAAGTACCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTCGACC
Found at i:110747102 original size:27 final size:27
Alignment explanation
Indices: 110747082--110747149 Score: 57
Period size: 27 Copynumber: 2.5 Consensus size: 27
110747072 TACCCTCAAC
*
110747082 TTGTAAAATTACCAAAGTACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
* * ***
110747109 TTATAGAATTACCATTTTA-CCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GAT
*
110747136 TTATAAAATTACCA
1 TTGTAAAATTACCA
110747150 TTTTACCCTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAT
Found at i:110747130 original size:54 final size:54
Alignment explanation
Indices: 110747072--110747186 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
110747062 ATTATTGAAA
* *
110747072 TACCCTCAACTTGTAAAATTACCAAAGTACCC-CTGATTTATAGAATTACCATTT
1 TACCCTCAACTTATAAAATTACCAAAGTACCCTC-GATTTACAGAATTACCATTT
* * *** * *
110747126 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCAACTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
110747180 TACCCTC
1 TACCCTC
110747187 GATTTATAGA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (54 bp):
TACCCTCAACTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
Found at i:110747150 original size:27 final size:27
Alignment explanation
Indices: 110747102--110747228 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
110747092 ACCAAAGTAC
110747102 CCCT-GATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
110747128 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
110747155 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
110747182 CCCTCGATTTATAGAATTGCCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
110747209 CGCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
110747229 TGAAATACCC
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 4 0.05
27 84 0.95
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:110747157 original size:81 final size:81
Alignment explanation
Indices: 110747072--110747228 Score: 176
Period size: 81 Copynumber: 1.9 Consensus size: 81
110747062 ATTATTGAAA
110747072 TACCCTCAACTTGTA-A-AATTACCAAAGTACCC-CTGATTTATAGAATTACCATTTTACCCTCG
1 TACCCTCAA-TT-TACAGAATTACCAAAGTACCCTC-GATTTATAGAATTACCATTTTACCCTCG
*
110747134 ATTTATAAAATTACCATTT
63 ATTTACAAAATTACCATTT
* * **** * * *
110747153 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTGCCGTTTTACGCTCGATT
1 TACCCTCAATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
110747218 TACAAAATTAC
66 TACAAAATTAC
110747229 TGAAATACCC
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
79 2 0.03
80 3 0.05
81 57 0.90
82 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCAATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:110747261 original size:27 final size:26
Alignment explanation
Indices: 110747223--110747417 Score: 149
Period size: 27 Copynumber: 7.3 Consensus size: 26
110747213 CGATTTACAA
* *
110747223 AATTACTGAAATACCCAGATAAGGTAG
1 AATTACCGAAATACCCTG-TAAGGTAG
* * *
110747250 AATTATCGAAATGCCCCTGTAGGGTAG
1 AATTACCGAAAT-ACCCTGTAAGGTAG
*
110747277 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAAGGTAG
*
110747304 AATTACCGGAATACCCCTGT-AGTGTAG
1 AATTACCGAAATA-CCCTGTAAG-GTAG
* * *
110747331 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAAGGTAG
** *
110747358 AATTACTAAAATACCCCTGTAAGGTGG
1 AATTACCGAAATA-CCCTGTAAGGTAG
* * * ** *
110747385 AATTACAGAGATACCTTGTGGGGTAA
1 AATTACCGAAATACCCTGTAAGGTAG
110747411 AATTACC
1 AATTACC
110747418 ATTTTGCCCC
Statistics
Matches: 138, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
26 15 0.11
27 118 0.86
28 5 0.04
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
AATTACCGAAATACCCTGTAAGGTAG
Found at i:110747281 original size:54 final size:54
Alignment explanation
Indices: 110747223--110747399 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 54
110747213 CGATTTACAA
* * *
110747223 AATTACTGAAATA-CCCAGATAAGGTAGAATTATCGAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCAG-TAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
110747277 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCAGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * ** * *
110747331 AATTATCAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTGG
1 AATTACCGAAATACCCCAGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
110747385 AATTACAGAGATACC
1 AATTACCGAAATACC
110747400 TTGTGGGGTA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 99 0.96
55 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
AATTACCGAAATACCCCAGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:110747308 original size:81 final size:80
Alignment explanation
Indices: 110747223--110747399 Score: 221
Period size: 81 Copynumber: 2.2 Consensus size: 80
110747213 CGATTTACAA
* * * *
110747223 AATTACTGAAATACCCAGATAAG-GTAGAATTATCGAAATGCCCCTGTAGGGTAGAATTACCGAA
1 AATTACAGAAATACCCAG-T-AGTGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTACCAAA
*
110747287 ATACCCCTGTAGGGTAG
64 ATACCCCTGTAAGGTAG
* * * *
110747304 AATTACCGGAATACCCCTGTAGTGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTACTAAAA
1 AATTACAGAAATA-CCCAGTAGTGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTACCAAAA
*
110747369 TACCCCTGTAAGGTGG
65 TACCCCTGTAAGGTAG
*
110747385 AATTACAGAGATACC
1 AATTACAGAAATACC
110747400 TTGTGGGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 4 0.05
81 74 0.90
82 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (80 bp):
AATTACAGAAATACCCAGTAGTGTAGAATTATCAAAATACCCCTGTAGGGTAGAATTACCAAAAT
ACCCCTGTAAGGTAG
Found at i:110747896 original size:22 final size:22
Alignment explanation
Indices: 110747844--110747908 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
110747834 TTAAAGCCTT
*
110747844 CTGATTATGGCTCTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
110747866 CT-ACATATGGCTCAGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
110747888 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110747909 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110748103 original size:26 final size:27
Alignment explanation
Indices: 110748067--110748137 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
110748057 ATTCTATTAA
* *
110748067 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
110748093 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
110748120 GTGACTCTGTCACAATAT
1 GTGGCTCTGCCACAATAT
110748138 TTGATAACTG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 20 0.50
27 20 0.50
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:110748127 original size:27 final size:26
Alignment explanation
Indices: 110748074--110748137 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
110748064 TAAGTGGCTT
* *
110748074 TGCCACATTATCTGTTCTGGTGGCTC
1 TGCCACAATATCTGTTCTGGTGACTC
110748100 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
*
110748127 TGTCACAATAT
1 TGCCACAATAT
110748138 TTGATAACTG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 14 0.41
27 20 0.59
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:110748319 original size:30 final size:31
Alignment explanation
Indices: 110748277--110748378 Score: 143
Period size: 31 Copynumber: 3.3 Consensus size: 31
110748267 TTGCATTCAC
110748277 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
110748309 ATTCT-ATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
110748339 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
110748370 ATTTTGATT
1 ATTCTGATT
110748379 CTAATTCTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
30 29 0.45
31 30 0.47
32 5 0.08
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:110748345 original size:6 final size:6
Alignment explanation
Indices: 110748277--110748356 Score: 58
Period size: 6 Copynumber: 13.0 Consensus size: 6
110748267 TTGCATTCAC
* * *
110748277 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCT- ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
110748326 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
110748357 TCACCTAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
5 8 0.14
6 37 0.64
7 11 0.19
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:110751214 original size:40 final size:40
Alignment explanation
Indices: 110751159--110751326 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
110751149 TGAATGATAC
* *
110751159 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
110751199 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
110751239 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
110751279 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
110751319 CC-GGCTAA
1 CCGGGCTAA
110751327 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:110774328 original size:27 final size:27
Alignment explanation
Indices: 110774298--110774354 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
110774288 ATACAAGAGC
*
110774298 ATATA-GTGAATC-CGCACTTAGTGCT
1 ATATATGTGAATCGCACACTTAGTGCT
* **
110774323 ATATATTTTCATCGCACACTTAGTGCT
1 ATATATGTGAATCGCACACTTAGTGCT
110774350 ATATA
1 ATATA
110774355 ATTTTCAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 5 0.19
26 4 0.15
27 17 0.65
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (27 bp):
ATATATGTGAATCGCACACTTAGTGCT
Found at i:110774370 original size:30 final size:29
Alignment explanation
Indices: 110774312--110774409 Score: 119
Period size: 30 Copynumber: 3.3 Consensus size: 29
110774302 AGTGAATCCG
110774312 CACTTAGTGCTATAT-ATTTTCA-TCGCA
1 CACTTAGTGCTATATAATTTTCACTCGCA
110774339 CACTTAGTGCTATATAATTTTCAGCTCGCA
1 CACTTAGTGCTATATAATTTTCA-CTCGCA
* * * *
110774369 CACTTAGTGCTGTACAATTTTAAAACCCGCA
1 CACTTAGTGCTATATAATTTT--CACTCGCA
110774400 CACTTAGTGC
1 CACTTAGTGC
110774410 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
27 15 0.24
28 7 0.11
30 24 0.39
31 15 0.24
32 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (29 bp):
CACTTAGTGCTATATAATTTTCACTCGCA
Found at i:110777031 original size:32 final size:32
Alignment explanation
Indices: 110776994--110777090 Score: 167
Period size: 32 Copynumber: 3.0 Consensus size: 32
110776984 AATGCTTGCC
*
110776994 ATGCCCGTCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
110777026 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
* *
110777058 ATCCCCATCATCCATTAACTACTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
110777090 A
1 A
110777091 AATGCATACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:110781888 original size:12 final size:12
Alignment explanation
Indices: 110781871--110781901 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
110781861 AGTACTACCT
110781871 CGGCCTCGACCA
1 CGGCCTCGACCA
110781883 CGGCCTCGACCA
1 CGGCCTCGACCA
110781895 CGGCCTC
1 CGGCCTC
110781902 TTCCCGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:110785068 original size:32 final size:32
Alignment explanation
Indices: 110785018--110785123 Score: 176
Period size: 32 Copynumber: 3.2 Consensus size: 32
110785008 ATATGCCCAT
110785018 AATGCTACCATGCCCATCATCCATTAACTATTAA
1 AATGCTA--ATGCCCATCATCCATTAACTATTAA
*
110785052 AATACTAATGCCCATCATCCATTAACTATTAA
1 AATGCTAATGCCCATCATCCATTAACTATTAA
*
110785084 AATGCTAATGCCCATTATCCATTAACTATTAA
1 AATGCTAATGCCCATCATCCATTAACTATTAA
110785116 AATGCTAA
1 AATGCTAA
110785124 AATGCATACA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 63 0.91
34 6 0.09
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
AATGCTAATGCCCATCATCCATTAACTATTAA
Found at i:110797612 original size:33 final size:32
Alignment explanation
Indices: 110797554--110797616 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
110797544 CTGATTGCAT
110797554 ACTGTACTGGTACTATAATGGGCTTAGGCCCC
1 ACTGTACTGGTACTATAATGGGCTTAGGCCCC
* *
110797586 ACTGATACTGTTACTGA-AATGTGCTTAGGCC
1 ACTG-TACTGGTACT-ATAATGGGCTTAGGCC
110797617 TTGACTACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 4 0.15
33 22 0.81
34 1 0.04
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (32 bp):
ACTGTACTGGTACTATAATGGGCTTAGGCCCC
Found at i:110801653 original size:28 final size:28
Alignment explanation
Indices: 110801584--110801684 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
110801574 GACAAGATTG
* * * *
110801584 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
110801614 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
110801642 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
110801671 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
110801685 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:110801678 original size:29 final size:28
Alignment explanation
Indices: 110801613--110801684 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
110801603 AAAATTGTAC
*
110801613 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
110801641 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
110801670 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
110801685 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:110809720 original size:28 final size:28
Alignment explanation
Indices: 110809651--110809751 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
110809641 GACAAGATTG
* * * *
110809651 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
110809681 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
110809709 GCACTAAGTGTGTGAG-CTGCATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
110809738 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
110809752 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 19 0.31
30 18 0.29
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:110809744 original size:29 final size:28
Alignment explanation
Indices: 110809680--110809751 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
110809670 AAAATTGTAC
*
110809680 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
*
110809708 AGCACTAAGTGTGTGAG-CTGCATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
110809737 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
110809752 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.46
29 19 0.49
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:110829442 original size:17 final size:17
Alignment explanation
Indices: 110829420--110829452 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
110829410 TCATGAAATC
110829420 ATGCCATAGACCTTAAA
1 ATGCCATAGACCTTAAA
*
110829437 ATGCCATAGACTTTAA
1 ATGCCATAGACCTTAA
110829453 CTAATAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (17 bp):
ATGCCATAGACCTTAAA
Found at i:110829498 original size:28 final size:28
Alignment explanation
Indices: 110829458--110829522 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
110829448 TTTAACTAAT
*
110829458 AAACAGGGGTCAGAGTATTCATACCCTG
1 AAACAGGGGTCAGAGTAGTCATACCCTG
110829486 AAACAGGGGTCAGAGTAGTCATACCCTG
1 AAACAGGGGTCAGAGTAGTCATACCCTG
110829514 AAACAGGGG
1 AAACAGGGG
110829523 AGACTTTAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.17
Consensus pattern (28 bp):
AAACAGGGGTCAGAGTAGTCATACCCTG
Found at i:110830338 original size:50 final size:49
Alignment explanation
Indices: 110830215--110830344 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
110830205 CTGGTATGCA
* * **
110830215 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
110830264 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
110830314 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
110830345 TCATAATTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 29 0.40
50 40 0.55
51 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:110832173 original size:17 final size:17
Alignment explanation
Indices: 110832151--110832187 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
110832141 GATGGGCCAA
110832151 AATGGGCC-ACTGGGCCC
1 AATGGGCCTAC-GGGCCC
110832168 AATGGGCCTACGGGCCC
1 AATGGGCCTACGGGCCC
110832185 AAT
1 AAT
110832188 TGGATAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.22, C:0.32, G:0.32, T:0.14
Consensus pattern (17 bp):
AATGGGCCTACGGGCCC
Found at i:110832426 original size:27 final size:27
Alignment explanation
Indices: 110832396--110832608 Score: 239
Period size: 27 Copynumber: 7.9 Consensus size: 27
110832386 ATTATAAAAG
*
110832396 TACCCTCGATTTACT-GAATTACCATTT
1 TACCCTCGATTTA-TAAAATTACCATTT
*
110832423 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* * * *
110832450 TACCGTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
110832477 TACCTTCGATTTACAAAATTACCTTTT
1 TACCCTCGATTTATAAAATTACCATTT
110832504 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
110832531 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * * * *
110832558 TATCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * *
110832585 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTATAAAATTACCA
110832609 AAATACTCCT
Statistics
Matches: 163, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.01
27 162 0.99
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCATTT
Found at i:110832524 original size:81 final size:80
Alignment explanation
Indices: 110832399--110832608 Score: 285
Period size: 81 Copynumber: 2.6 Consensus size: 80
110832389 ATAAAAGTAC
* * *
110832399 CCTCGATTTACTGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCGTCAATTTAT
1 CCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTAT
*
110832464 AGAATTACCGTTTTA
66 AAAATTACCGTTTTA
* * *
110832479 CCTTCGATTTACAAAATTACCTTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTA
1 CC-TCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTA
*
110832544 TAAAATTATCGTTTTA
65 TAAAATTACCGTTTTA
* * * * *
110832560 TCCTCGATTTACAGAATTATCGTTTTACCCTTGGTTTACAAAATTACCA
1 -CCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCA
110832609 AAATACTCCT
Statistics
Matches: 114, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 2 0.02
81 110 0.96
82 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (80 bp):
CCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTAT
AAAATTACCGTTTTA
Found at i:110832629 original size:81 final size:81
Alignment explanation
Indices: 110832396--110832633 Score: 228
Period size: 81 Copynumber: 2.9 Consensus size: 81
110832386 ATTATAAAAG
* ** * * * *** * *
110832396 TACCCTCGATTTACTGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCGTCAATT
1 TACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
*
110832461 TATAGAATTACCGTTT
66 TATAAAATTACCGTTT
* * ***
110832477 TACCTTCGATTTACAAAATTACCTTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
1 TACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
*
110832542 TATAAAATTATCGTTT
66 TATAAAATTACCGTTT
* * * * *
110832558 TATCC-TCGATTTACAGAATTATCGTTTTACCCTTGGTTTACAAAATTACCAAAATACTCCT-GG
1 TA-CCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATAC-CCTCGA
*
110832621 TTTGTAAAATTAC
64 TTTATAAAATTAC
110832634 TAAAATACCC
Statistics
Matches: 134, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
81 129 0.96
82 5 0.04
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TATAAAATTACCGTTT
Found at i:110832632 original size:54 final size:53
Alignment explanation
Indices: 110832585--110832696 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 53
110832575 ATTATCGTTT
*
110832585 TACCCTTGGTTTACAAAATTACCAAAATA-CTCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATATC-CCTAGTTTGTAAAATTACT-AAA
* *
110832639 TACCCTTGGTTTATAAAATTACCAAAATATCCCTAGTTTGTAAAATTACCAAA
1 TACCCTTGGTTTACAAAATTACCAAAATATCCCTAGTTTGTAAAATTACTAAA
*
110832692 AACCC
1 TACCC
110832697 CTGATTTGTG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
53 7 0.13
54 45 0.85
55 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (53 bp):
TACCCTTGGTTTACAAAATTACCAAAATATCCCTAGTTTGTAAAATTACTAAA
Found at i:110832710 original size:27 final size:27
Alignment explanation
Indices: 110832599--110832777 Score: 141
Period size: 27 Copynumber: 6.6 Consensus size: 27
110832589 CTTGGTTTAC
* *
110832599 AAAATTACCAAAATACTCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
110832626 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
*
110832653 AAAATTACCAAAATATCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
110832680 AAAATTACCAAAA-ACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*** **
110832706 GAAAATTATTGAAATA-CCCTCGACATGT
1 -AAAATTACCAAAATACCCCT-GATTTGT
*** *
110832734 AAAATTATTGAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
110832761 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
110832778 ATTGATTTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
26 10 0.08
27 109 0.87
28 7 0.06
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:110832711 original size:54 final size:54
Alignment explanation
Indices: 110832585--110832713 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
110832575 ATTATCGTTT
* * * * *
110832585 TACCCTTGGTTTACAAAATTACCAAAATACTCCTGGTTTGTAAAATTACTAAAA
1 TACCCCTGATTTATAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAAAA
* *
110832639 TACCCTTGGTTTATAAAATTACCAAAATA-TCCCTAGTTTGTAAAATTACCAAAA
1 TACCCCTGATTTATAAAATTACCAAAATACT-CCTAGTTTGTAAAATTACCAAAA
*
110832693 -ACCCCTGATTTGTGAAAATTA
1 TACCCCTGATTTAT-AAAATTA
110832714 TTGAAATACC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
53 11 0.16
54 56 0.84
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
TACCCCTGATTTATAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAAAA
Found at i:110832737 original size:81 final size:81
Alignment explanation
Indices: 110832599--110832777 Score: 191
Period size: 81 Copynumber: 2.2 Consensus size: 81
110832589 CTTGGTTTAC
* * * ***
110832599 AAAATTACCAAAATACTCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACATATAAAATTACCAA
*
110832664 AATATCCCTAG-TTTGT
66 AATA-CCCTAGACTTGT
* * * ***
110832680 AAAATTACCAAAA-ACCCCTGATTTGTGAAAATTATTGAAATACCCTCGACATGTAAAATTATTG
1 AAAATTACCAAAATACCCCTGATTTGT-AAAATTACTAAAATACCCTCGACATATAAAATTACCA
*
110832744 AAATACCCTCGACTTGT
65 AAATACCCTAGACTTGT
*
110832761 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
110832778 ATTGATTTAC
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
80 16 0.20
81 61 0.76
82 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACATATAAAATTACCAA
AATACCCTAGACTTGT
Found at i:110833019 original size:27 final size:27
Alignment explanation
Indices: 110832825--110833037 Score: 295
Period size: 27 Copynumber: 7.9 Consensus size: 27
110832815 AAAATTATCA
*
110832825 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
110832852 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
110832879 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
110832906 AAATACCCCTTTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
110832933 CAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
110832960 AAATACCCCTGTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
*
110832987 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
110833014 AGATA-CCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
110833038 CATTTTGCCC
Statistics
Matches: 167, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
26 15 0.09
27 151 0.90
28 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:110833517 original size:22 final size:22
Alignment explanation
Indices: 110833465--110833529 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
110833455 TTAAAGCCTT
* *
110833465 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
110833487 CT-ACATATGGCTCTGTACCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
110833509 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
110833530 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:110833718 original size:27 final size:27
Alignment explanation
Indices: 110833688--110833789 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
110833678 ATTCTGTTAA
* *
110833688 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
110833715 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
110833742 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
110833769 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
110833790 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:110833959 original size:31 final size:31
Alignment explanation
Indices: 110833924--110834002 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
110833914 TTGCATTCAC
* *
110833924 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* * *
110833955 ATTCTGATCCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
110833986 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
110834003 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:110833967 original size:6 final size:6
Alignment explanation
Indices: 110833952--110834011 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
110833942 TTACCTAATA
* *
110833952 CTGATT CTGATC CTGATT CTG-TCAC CTGATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
110834001 CT-AGTT CTGAT
1 CTGA-TT CTGAT
110834012 AATGTTACTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 2 0.04
6 38 0.84
7 4 0.09
8 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:110834000 original size:12 final size:12
Alignment explanation
Indices: 110833924--110834011 Score: 65
Period size: 12 Copynumber: 7.2 Consensus size: 12
110833914 TTGCATTCAC
*
110833924 ATTCTGATTTTG
1 ATTCTGATTCTG
*
110833936 ATTCTG-TTACCTA
1 ATTCTGATT--CTG
*
110833949 ATACTGATTCTG
1 ATTCTGATTCTG
*
110833961 ATCCTGATTCTG
1 ATTCTGATTCTG
*
110833973 -TCACCTGATTCTG
1 AT--TCTGATTCTG
110833986 ATTCTGATTCTG
1 ATTCTGATTCTG
110833998 ATTCT-AGTTCTG
1 ATTCTGA-TTCTG
110834010 AT
1 AT
110834012 AATGTTACTT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
11 4 0.06
12 40 0.63
13 16 0.25
14 3 0.05
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (12 bp):
ATTCTGATTCTG
Found at i:110836504 original size:24 final size:24
Alignment explanation
Indices: 110836473--110836555 Score: 157
Period size: 24 Copynumber: 3.5 Consensus size: 24
110836463 TCGCACTATG
110836473 ACACATAGTGCCATAGTAAATCGC
1 ACACATAGTGCCATAGTAAATCGC
*
110836497 ACACATAGTGCTATAGTAAATCGC
1 ACACATAGTGCCATAGTAAATCGC
110836521 ACACATAGTGCCATAGTAAATCGC
1 ACACATAGTGCCATAGTAAATCGC
110836545 ACACATAGTGC
1 ACACATAGTGC
110836556 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (24 bp):
ACACATAGTGCCATAGTAAATCGC
Found at i:110837610 original size:29 final size:29
Alignment explanation
Indices: 110837481--110837603 Score: 237
Period size: 29 Copynumber: 4.2 Consensus size: 29
110837471 GTGACGAGAT
110837481 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
110837510 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
110837539 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
110837568 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
110837597 CGGCACT
1 TGGCACT
110837604 GGGTGTGTGA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:110837628 original size:58 final size:58
Alignment explanation
Indices: 110837482--110837640 Score: 203
Period size: 58 Copynumber: 2.7 Consensus size: 58
110837472 TGACGAGATT
* * *
110837482 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
* *
110837540 GGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATAC
1 GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
** * * * *
110837598 GGCACTGGGTGTGTGA-GCTCGAAGGGTATGGCACTATGTGTGC
1 GGCACTAAGTGTG-CATGCTCGAAAGATATGGCACTAAGTGTGC
110837641 GGGCTTAAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
58 90 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTCGAAAGATATGGCACTAAGTGTGCATGCTGGAAATATAC
Found at i:110837628 original size:87 final size:87
Alignment explanation
Indices: 110837481--110837669 Score: 229
Period size: 87 Copynumber: 2.2 Consensus size: 87
110837471 GTGACGAGAT
* * *
110837481 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
* *
110837546 AAGTGTGCATGCTGGAAAT-ATA
66 AAGTGTGCAGGCT-GAAATCACA
** * * *
110837568 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGTGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTG-CATGCTCGAAAGATATGGCAC
* * *
110837632 TATGTGTGCGGGCTTAAATCACA
65 TAAGTGTGCAGGCTGAAATCACA
110837655 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
110837670 GAAATCGAGT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 4 0.05
87 82 0.94
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGCTGAAATCACA
Found at i:110844497 original size:29 final size:29
Alignment explanation
Indices: 110844464--110844623 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
110844454 GTGACGAGAT
110844464 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
110844493 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
110844522 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
110844551 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
110844580 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
110844609 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
110844624 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:110849396 original size:40 final size:40
Alignment explanation
Indices: 110849341--110849491 Score: 302
Period size: 40 Copynumber: 3.8 Consensus size: 40
110849331 AACATTGGAA
110849341 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110849381 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110849421 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
110849461 ATATATCCGGGCTAAGACCCGAAGGCATTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCG
110849492 AGTTGTGGGC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:110860742 original size:40 final size:40
Alignment explanation
Indices: 110860693--110860860 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
110860683 TCTTCGGAAT
* * *
110860693 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
110860732 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
110860772 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
110860812 TTAGCCCGGATAGAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
110860852 TTAGCCCGG
1 TTAGCCCGG
110860861 GTATCATTCA
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:110860820 original size:80 final size:80
Alignment explanation
Indices: 110860684--110860860 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
110860674 AACCGAGTCT
* * * * *
110860684 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTG-G
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGA-TAGAA
*
110860747 TAACTTGCACAAATGC
65 TAACTAGCACAAATGC
* ** *
110860763 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATAGAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATAGAA
* *
110860827 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
110860843 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
110860861 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 12 0.15
80 68 0.83
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATAGAAT
AACTAGCACAAATGC
Found at i:110863060 original size:80 final size:80
Alignment explanation
Indices: 110862927--110863147 Score: 352
Period size: 80 Copynumber: 2.8 Consensus size: 80
110862917 ATGATATCCA
* * * * * *
110862927 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATGTTCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTGTGC
110862992 GAGTTACCATAACCG
66 GAGTTACCATAACCG
*
110863007 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTGTGT
1 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
110863072 GAGTTACCATAACTG
66 GAGTTACCATAACCG
**
110863087 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTT
110863148 AAGCGAGTAG
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 131 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACCATAACCG
Found at i:110863154 original size:120 final size:119
Alignment explanation
Indices: 110862920--110863181 Score: 350
Period size: 120 Copynumber: 2.2 Consensus size: 119
110862910 TATTCGAATG
**
110862920 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATGTTCGGGCTAAGTCCCGAAGGCA
1 ATATCC-GGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATACTCGGGCTAAGTCCCGAAGGCA
* **
110862985 TTTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
65 ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTAAGCGAG-TAGCT
* * *
110863040 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACCATAACT-GGGCTAAGTCCCGAAGG
1 ATATCC-GGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCAT-ACTCGGGCTAAGTCCCGAAGG
* *
110863103 CAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTAAGCGAGTAGCT
63 CAATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTAAGCGAGTAGCT
**
110863160 ATATCCGGCTAAACCCCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
110863182 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
119 17 0.14
120 107 0.86
121 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATACTCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTAAGCGAGTAGCT
Found at i:110863162 original size:40 final size:40
Alignment explanation
Indices: 110862927--110863147 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
110862917 ATGATATCCA
* * * ***
110862927 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATGTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
110862967 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
* * **
110863007 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
* *
110863047 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCATAACTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
* *
110863087 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
110863127 GGCTAAGTCCCGAAGGCATTT
1 GGCTAAGTCCCGAAGGCATTT
110863148 AAGCGAGTAG
Statistics
Matches: 160, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 160 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCG
Found at i:110863181 original size:39 final size:40
Alignment explanation
Indices: 110862965--110863181 Score: 159
Period size: 40 Copynumber: 5.5 Consensus size: 40
110862955 TGACCATGTT
** * ** *
110862965 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAAC
1 CGGGCTAAACCCCGAAGGCAATTAAGCGAGTTACTATAAC
** ** **
110863005 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTC
1 CGGGCTAAACCCCGAAGGCAATTAAGCGAGTTACTATAAC
** * ** * *
110863045 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCATAAC
1 CGGGCTAAACCCCGAAGGCAATTAAGCGAGTTACTATAAC
* ** **
110863085 TGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAAC
1 CGGGCTAAACCCCGAAGGCAATTAAGCGAGTTACTATAAC
** * *
110863125 CGGGCTAAGTCCCGAAGGCATTTAAGCGAG-TAGCTATATC
1 CGGGCTAAACCCCGAAGGCAATTAAGCGAGTTA-CTATAAC
110863165 C-GGCTAAACCCCGAAGG
1 CGGGCTAAACCCCGAAGG
110863182 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 16 0.10
40 140 0.90
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CGGGCTAAACCCCGAAGGCAATTAAGCGAGTTACTATAAC
Found at i:110871122 original size:80 final size:80
Alignment explanation
Indices: 110870989--110871212 Score: 358
Period size: 80 Copynumber: 2.8 Consensus size: 80
110870979 CGAATGATAT
* * * * *
110870989 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATGTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTG
110871054 TACGAGTTACCATAA
66 TACGAGTTACCATAA
110871069 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTG
*
110871134 TGCGAGTTACCATAA
66 TACGAGTTACCATAA
* ** *
110871149 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTCCTATAACCAGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTT
110871213 AAGCGAGTAG
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 134 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCATTTG
TACGAGTTACCATAA
Found at i:110871219 original size:120 final size:120
Alignment explanation
Indices: 110870985--110871246 Score: 359
Period size: 120 Copynumber: 2.2 Consensus size: 120
110870975 TATTCGAATG
* **
110870985 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATGTCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTGACCATAACCGGGCTAAGTCCCGAAGGCA
* * **
110871050 TTTGTACGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
66 ATTGTACGAGTTACCATAACCAGGCTAAGTCCCGAAGGCAATTAAGCGAG-TAGCT
* * *
110871105 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTGACCATAACCGGGCTAAGTCCCGAAGGCA
* *
110871170 ATTGTGCGAGTT-CCTATAACCAGGCTAAGTCCCGAAGGCATTTAAGCGAGTAGCT
66 ATTGTACGAGTTACC-ATAACCAGGCTAAGTCCCGAAGGCAATTAAGCGAGTAGCT
**
110871225 ATATCC-GGCTAAACCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
110871247 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
119 18 0.14
120 107 0.86
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTGACCATAACCGGGCTAAGTCCCGAAGGCA
ATTGTACGAGTTACCATAACCAGGCTAAGTCCCGAAGGCAATTAAGCGAGTAGCT
Found at i:110871227 original size:40 final size:40
Alignment explanation
Indices: 110870989--110871212 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
110870979 CGAATGATAT
* * * **
110870989 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
*
110871029 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * **
110871069 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
110871109 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
*
110871149 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTT-CCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACC-ATAA
*
110871189 CCAGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
110871213 AAGCGAGTAG
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 2 0.01
40 163 0.99
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:110874375 original size:43 final size:43
Alignment explanation
Indices: 110874255--110874413 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
110874245 AGCTCGTACA
* * *
110874255 ATGCCAATGTCCTAGACGTGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATAT-G
** * *** *
110874298 ATGCCATTGTTCCAGATAAGGTCTTACGCG-AAATCAAATATG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATG
110874340 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTCA--
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA-AA-T-ATG
110874384 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
110874414 AGAACACATA
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 27 0.28
43 35 0.36
44 32 0.33
45 1 0.01
46 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATG
Found at i:110881736 original size:27 final size:28
Alignment explanation
Indices: 110881680--110881749 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
110881670 AAATTTGTAC
110881680 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
110881708 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
110881735 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
110881750 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:110881760 original size:27 final size:27
Alignment explanation
Indices: 110881680--110881761 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
110881670 AAATTTGTAC
* *
110881680 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
110881708 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
110881735 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
110881762 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:110906829 original size:49 final size:49
Alignment explanation
Indices: 110906760--110906959 Score: 359
Period size: 49 Copynumber: 4.1 Consensus size: 49
110906750 GTACATAATA
*
110906760 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
110906809 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
110906858 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA--TAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
110906905 ATATATGTGATAAGGCCTAATGGACGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
110906954 ATATAT
1 ATATAT
110906960 ATGTGGTAAA
Statistics
Matches: 145, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
47 45 0.31
49 100 0.69
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
Found at i:110906987 original size:98 final size:97
Alignment explanation
Indices: 110906760--110906959 Score: 375
Period size: 96 Copynumber: 2.1 Consensus size: 97
110906750 GTACATAATA
110906760 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA-GTATATATATGTGATAAGGC
*
110906825 CTAATGGCCGACGTGATGAATGTGAAAATGTAT
65 CTAATGGACGACGTGATGAATGTGAAAATGTAT
110906858 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAA-TATATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAAGTATATATATGTGATAAGGCC
110906922 TAATGGACGACGTGATGAATGTGAAAATGTAT
66 TAATGGACGACGTGATGAATGTGAAAATGTAT
110906954 ATATAT
1 ATATAT
110906960 ATGTGGTAAA
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
96 57 0.56
98 44 0.44
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (97 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAAGTATATATATGTGATAAGGCC
TAATGGACGACGTGATGAATGTGAAAATGTAT
Found at i:110907083 original size:37 final size:36
Alignment explanation
Indices: 110907028--110907114 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
110907018 AACTTGGAAA
110907028 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
110907066 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
110907103 TATGTCCGGGTA
1 TATGTCCGGGTA
110907115 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:110911035 original size:26 final size:26
Alignment explanation
Indices: 110910996--110911048 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
110910986 AAGCTCGTAC
*
110910996 AATGCCAACATCCCAGACGTGGTCTT
1 AATGCCAACATCCCAAACGTGGTCTT
* *
110911022 AATGCCAACGTCCCAAATGTGGTCTT
1 AATGCCAACATCCCAAACGTGGTCTT
110911048 A
1 A
110911049 CATGTAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
AATGCCAACATCCCAAACGTGGTCTT
Found at i:110911093 original size:43 final size:43
Alignment explanation
Indices: 110911042--110911163 Score: 122
Period size: 42 Copynumber: 2.8 Consensus size: 43
110911032 TCCCAAATGT
*
110911042 GGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAA
1 GGTCTTACATGTAATCAAATATTGATGCCAATGTCCCAGACAA
* *** * * *
110911085 GGTTTTACACAAAATCAAATA-CGATACCAATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATTGATGCCAATGTCCCAGACAA
* *
110911127 GGTCTTACATGTAAATCATAA-GTTGATGCCAACGTCC
1 GGTCTTACATGT-AATCA-AATATTGATGCCAATGTCC
110911164 TAGATGTGGT
Statistics
Matches: 60, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
42 25 0.42
43 22 0.37
44 13 0.22
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATTGATGCCAATGTCCCAGACAA
Found at i:110922145 original size:44 final size:41
Alignment explanation
Indices: 110922042--110922159 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 41
110922032 GTAATCAAAT
* * *
110922042 ATCGATGCCACTGTCCCAAACAGGGTCTTACACGAAATCAA
1 ATCGATGCCAATGTCCCAAACATGGTCTTACACTAAATCAA
* * *
110922083 ATACGCTGTCAATGTCCCAGACATGGTCTTACACATAAATCATA
1 AT-CGATGCCAATGTCCCAAACATGGTCTTACAC-TAAATCA-A
*
110922127 AGTCGATGCCAATGTCCCAAACGTGGTCTTACA
1 A-TCGATGCCAATGTCCCAAACATGGTCTTACA
110922160 TGAAAACACA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.03
42 26 0.41
43 6 0.10
44 28 0.44
45 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (41 bp):
ATCGATGCCAATGTCCCAAACATGGTCTTACACTAAATCAA
Found at i:110927245 original size:40 final size:40
Alignment explanation
Indices: 110927175--110927392 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
110927165 AAACCAAGTA
* *
110927175 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
110927214 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
110927254 CCTTCGGGACTTAGCCCGCA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
110927294 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
110927334 CCTTCGGGGCTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
110927374 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
110927393 TTATCATCCG
Statistics
Matches: 158, Mismatches: 15, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 17 0.11
40 139 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:110927307 original size:80 final size:80
Alignment explanation
Indices: 110927208--110927392 Score: 343
Period size: 80 Copynumber: 2.3 Consensus size: 80
110927198 GCTACTCGCT
* *
110927208 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGC
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
110927273 AATTAGTCACTAGCA
66 AATTAGTCACTAGCA
*
110927288 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
110927353 AATTAGTCACTAGCA
66 AATTAGTCACTAGCA
110927368 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
110927393 TTATCATCCG
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 102 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
AATTAGTCACTAGCA
Found at i:110935474 original size:40 final size:40
Alignment explanation
Indices: 110935419--110935594 Score: 311
Period size: 40 Copynumber: 4.4 Consensus size: 40
110935409 CCAAGTACCT
110935419 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
110935459 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
110935499 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
* *
110935539 TTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCC
110935578 TTCGGGACTTAGCCCGG
1 TTCGGGACTTAGCCCGG
110935595 TTATCATCCG
Statistics
Matches: 132, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
38 1 0.01
39 35 0.27
40 96 0.73
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
Found at i:110944448 original size:40 final size:40
Alignment explanation
Indices: 110944363--110944513 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
110944353 AATTGAATGA
* * *
110944363 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
110944403 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
110944444 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
110944483 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
110944514 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:110944527 original size:40 final size:40
Alignment explanation
Indices: 110944399--110944529 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
110944389 TATGCTGGAA
* * *
110944399 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
110944439 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
110944479 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
110944519 ATTATATCCGG
1 ATTATATCCGG
110944530 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:110952529 original size:39 final size:40
Alignment explanation
Indices: 110952402--110952531 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
110952392 TATGCTGGAA
* * * *
110952402 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
110952442 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
110952482 ATTCTATCCGGGCTAAGACCC-AAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
110952521 ATTATATCCGG
1 ATTATATCCGG
110952532 TTATATCCGA
Statistics
Matches: 71, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
38 1 0.01
39 23 0.32
40 47 0.66
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:110955024 original size:16 final size:16
Alignment explanation
Indices: 110955003--110955033 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
110954993 GGCAAATCCA
*
110955003 GAAATGTCGAAAAGCC
1 GAAATGCCGAAAAGCC
110955019 GAAATGCCGAAAAGC
1 GAAATGCCGAAAAGC
110955034 TAAAAGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.10
Consensus pattern (16 bp):
GAAATGCCGAAAAGCC
Found at i:110959493 original size:16 final size:16
Alignment explanation
Indices: 110959472--110959502 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
110959462 GGCAAATCTC
110959472 GAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
110959488 GAAATGCCGAAAAGC
1 GAAATGCCGAAAAGC
110959503 CAAAAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.10
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:110959774 original size:28 final size:29
Alignment explanation
Indices: 110959718--110959779 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
110959708 GAAAGCATGT
*
110959718 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGAGATTTGGGCCTAATAGGCC
* * *
110959747 ATATGAATGAGA-TTGGGCTTAGTGGGCC
1 ATATGAATGAGATTTGGGCCTAATAGGCC
110959775 ATATG
1 ATATG
110959780 CATGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATAGGCC
Found at i:110967009 original size:122 final size:123
Alignment explanation
Indices: 110966733--110967069 Score: 588
Period size: 122 Copynumber: 2.8 Consensus size: 123
110966723 GAATTATGTG
*
110966733 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
110966798 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
110966856 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
110966921 GCTAAGTCCCGAAGGCAATTATG-TAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
110966978 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
110967043 GCTAAGT-CCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
110967070 AATTATATCC
Statistics
Matches: 205, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
121 13 0.06
122 105 0.51
123 87 0.42
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:110967279 original size:40 final size:40
Alignment explanation
Indices: 110967072--110967265 Score: 284
Period size: 40 Copynumber: 4.8 Consensus size: 40
110967062 ATGCTAGTAA
* * * *
110967072 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
110967111 ACTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 -TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
110967152 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
110967192 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
* *
110967232 TTATATCCGGGCTAAGACCC-AAGGGCATTCGTGC
1 TTATATCCGGGCTAATACCCGAA-GGCATTTGTGC
110967266 GTGTGGTCAT
Statistics
Matches: 143, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 2 0.01
40 139 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
Found at i:110969406 original size:40 final size:40
Alignment explanation
Indices: 110969351--110969606 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
110969341 CGGATGATAA
* *
110969351 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
110969391 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
110969431 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
110969471 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
110969511 CGGGCTAAGTCCCGAAGGCATTTGTGC-AACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
110969550 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
110969590 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
110969607 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
39 53 0.26
40 148 0.73
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:110977488 original size:40 final size:40
Alignment explanation
Indices: 110977433--110977649 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
110977423 CGGATGATAA
* *
110977433 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
110977473 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
110977513 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
110977553 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
110977593 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
110977633 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
110977650 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 150 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:110984066 original size:16 final size:16
Alignment explanation
Indices: 110984047--110984082 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
110984037 AAATAGGGTT
110984047 GTAATAGAATAGAGCC
1 GTAATAGAATAGAGCC
* *
110984063 GTAATGGAATAGAGCT
1 GTAATAGAATAGAGCC
110984079 GTAA
1 GTAA
110984083 CCAATAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.28, T:0.22
Consensus pattern (16 bp):
GTAATAGAATAGAGCC
Found at i:110984390 original size:34 final size:32
Alignment explanation
Indices: 110984347--110984411 Score: 103
Period size: 34 Copynumber: 2.0 Consensus size: 32
110984337 CTTAATATAA
110984347 TTATTTTTATATTAAATTATATTAAAATGATTTT
1 TTATTTTTATATTAAATTATA-TAAAAT-ATTTT
*
110984381 TTATTTTTATATTTAATTATATAAAATATTT
1 TTATTTTTATATTAAATTATATAAAATATTT
110984412 AAAAATTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 4 0.13
33 6 0.20
34 20 0.67
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (32 bp):
TTATTTTTATATTAAATTATATAAAATATTTT
Found at i:110985763 original size:17 final size:17
Alignment explanation
Indices: 110985741--110985791 Score: 93
Period size: 17 Copynumber: 3.0 Consensus size: 17
110985731 TATATATTTG
110985741 AAATATGTTATAATATA
1 AAATATGTTATAATATA
110985758 AAATATGTTATAATATA
1 AAATATGTTATAATATA
*
110985775 AAATAAGTTATAATATA
1 AAATATGTTATAATATA
110985792 CTAAGTGGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATATGTTATAATATA
Found at i:110987920 original size:78 final size:79
Alignment explanation
Indices: 110987773--110987958 Score: 297
Period size: 78 Copynumber: 2.4 Consensus size: 79
110987763 TATTCGGATG
* *
110987773 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
110987838 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* *
110987852 ATATCC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
110987914 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
110987930 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
110987959 AGCAAGTAGC
Statistics
Matches: 98, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
76 2 0.02
77 32 0.33
78 38 0.39
79 13 0.13
80 13 0.13
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:110987972 original size:40 final size:40
Alignment explanation
Indices: 110987773--110987958 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
110987763 TATTCGGATG
* *
110987773 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
110987813 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
110987852 ATATCC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
110987890 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
110987930 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
110987959 AGCAAGTAGC
Statistics
Matches: 137, Mismatches: 4, Indels: 10
0.91 0.03 0.07
Matches are distributed among these distances:
38 36 0.26
39 36 0.26
40 65 0.47
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:110989818 original size:24 final size:24
Alignment explanation
Indices: 110989786--110989897 Score: 136
Period size: 24 Copynumber: 4.7 Consensus size: 24
110989776 GAAATGACAT
*
110989786 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTAGAA
**
110989810 TGGCACTATGTGTGCGGATTTCAA
1 TGGCACTATGTGTGCGGATTAGAA
* *
110989834 TGGCACTACGTGTGTGGATTAGCAA
1 TGGCACTATGTGTGCGGATTAG-AA
* *
110989859 -GGCACTATGTGTGCGGGTTAGCA
1 TGGCACTATGTGTGCGGATTAGAA
*
110989882 TGGCATTATGTGTGCG
1 TGGCACTATGTGTGCG
110989898 AAATCGGTTG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
23 1 0.01
24 73 0.96
25 2 0.03
ACGTcount: A:0.20, C:0.15, G:0.34, T:0.31
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTAGAA
Found at i:110994331 original size:12 final size:12
Alignment explanation
Indices: 110994314--110994338 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
110994304 TATTTATTTT
110994314 ATGAAATTATTC
1 ATGAAATTATTC
110994326 ATGAAATTATTC
1 ATGAAATTATTC
110994338 A
1 A
110994339 AAGAAGACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATGAAATTATTC
Found at i:110994523 original size:55 final size:54
Alignment explanation
Indices: 110994436--110994690 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
110994426 ATTAGGGTTT
* *
110994436 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
110994491 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
110994546 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
110994599 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
110994648 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
110994691 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:110994642 original size:108 final size:110
Alignment explanation
Indices: 110994446--110994643 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
110994436 AAGGATACCG
*
110994446 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
110994511 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
110994556 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
110994618 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
110994644 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:110994903 original size:16 final size:16
Alignment explanation
Indices: 110994882--110994912 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
110994872 ATAAATTTGA
110994882 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
110994898 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
110994913 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:111002073 original size:55 final size:52
Alignment explanation
Indices: 111001986--111002289 Score: 197
Period size: 55 Copynumber: 5.8 Consensus size: 52
111001976 ATTAGGGTTT
* *
111001986 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
111002041 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
111002096 AAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
*
111002149 AAGGCTACCATGTAAGACCATG-TAAGACATGCAAGCATGGCATGGT-AG-TTC--A---
1 AAGG-TACCATGTAAGACCATGCCAAGACATG---GCAT----TGGTAAGTTTCTAAGGC
* *
111002201 AAGG-ACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * *
111002248 AAGGATACCACGTAAGACCATGACAAGTCATGG-AATGGTAAG
1 AAGG-TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
111002290 GTACCCGTGT
Statistics
Matches: 208, Mismatches: 23, Indels: 43
0.76 0.08 0.16
Matches are distributed among these distances:
44 4 0.02
45 2 0.01
46 3 0.01
47 5 0.02
48 12 0.06
49 24 0.12
50 16 0.08
51 8 0.04
52 16 0.08
53 25 0.12
54 8 0.04
55 72 0.35
56 4 0.02
58 5 0.02
59 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.21
Consensus pattern (52 bp):
AAGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:111002280 original size:49 final size:43
Alignment explanation
Indices: 111002164--111002289 Score: 143
Period size: 49 Copynumber: 2.8 Consensus size: 43
111002154 TACCATGTAA
111002164 GACCATGTAAGA-CATGCAAGCATGGC-ATGGT-AGTTCAAAG
1 GACCATGTAAGACCATGCAAGCATGGCAATGGTAAGTTCAAAG
111002204 GACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAAAAG
1 GACCATGTAAGACCATG-CAAG-CATGGCAATGGTAAG-TTC-AAAG
*
111002251 GATACCACGTAAGACCATGACAAGTCATGG-AATGGTAAG
1 G--ACCATGTAAGACCATG-CAAG-CATGGCAATGGTAAG
111002290 GTACCCGTGT
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
40 12 0.16
41 4 0.05
42 4 0.05
43 6 0.08
44 5 0.07
45 2 0.03
46 3 0.04
47 5 0.07
48 9 0.12
49 24 0.32
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (43 bp):
GACCATGTAAGACCATGCAAGCATGGCAATGGTAAGTTCAAAG
Found at i:111002502 original size:16 final size:16
Alignment explanation
Indices: 111002481--111002511 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
111002471 ATAAATTTGA
111002481 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
111002497 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
111002512 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:111006543 original size:17 final size:17
Alignment explanation
Indices: 111006517--111006550 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
111006507 TATATATTTG
*
111006517 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
111006534 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
111006551 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:111007256 original size:24 final size:24
Alignment explanation
Indices: 111007224--111007335 Score: 145
Period size: 24 Copynumber: 4.7 Consensus size: 24
111007214 GAAATGACAT
* *
111007224 TGGCACTATGTGTACGGATTTGAA
1 TGGCACTATGTGTGCGGATTAGAA
*
111007248 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTAGAA
* *
111007272 TGGCACTACGTGTGTGGATTAGCAA
1 TGGCACTATGTGTGCGGATTAG-AA
* *
111007297 -GGCACTATGTGTGCGGGTTAGCA
1 TGGCACTATGTGTGCGGATTAGAA
111007320 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
111007336 AAATCGGTTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.01
24 75 0.96
25 2 0.03
ACGTcount: A:0.21, C:0.15, G:0.34, T:0.30
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTAGAA
Found at i:111011260 original size:50 final size:50
Alignment explanation
Indices: 111011180--111011289 Score: 150
Period size: 50 Copynumber: 2.2 Consensus size: 50
111011170 TTCAACGAGT
* * *
111011180 ATGAAAAGGAAAGGAACGGTAAGTGTTCAAATGAACTATATAATGCATTA
1 ATGAAAAGGAAAGGAACGGTAAGTGGTCAAATGAAATATATAATACATTA
* *
111011230 ATGAAAAGGAAA-GAAGCGGTAAGTGGTCAAATGAAATATATCATATATTA
1 ATGAAAAGGAAAGGAA-CGGTAAGTGGTCAAATGAAATATATAATACATTA
*
111011280 ATGTAAAGGA
1 ATGAAAAGGA
111011290 TTGAAATGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
49 3 0.06
50 50 0.94
ACGTcount: A:0.47, C:0.06, G:0.23, T:0.24
Consensus pattern (50 bp):
ATGAAAAGGAAAGGAACGGTAAGTGGTCAAATGAAATATATAATACATTA
Found at i:111011406 original size:23 final size:23
Alignment explanation
Indices: 111011380--111011434 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
111011370 TTGGCTTATC
**
111011380 ATGTGGTTGATCCCAAAAGAGTT
1 ATGTGGTAAATCCCAAAAGAGTT
*
111011403 ATGT-GTAAATGCCAAAAGAGTT
1 ATGTGGTAAATCCCAAAAGAGTT
111011425 ATGT-GTAAAT
1 ATGTGGTAAAT
111011435 GCACTAACTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (23 bp):
ATGTGGTAAATCCCAAAAGAGTT
Found at i:111011418 original size:22 final size:22
Alignment explanation
Indices: 111011392--111011436 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
111011382 GTGGTTGATC
111011392 CCAAAAGAGTTATGTGTAAATG
1 CCAAAAGAGTTATGTGTAAATG
111011414 CCAAAAGAGTTATGTGTAAATG
1 CCAAAAGAGTTATGTGTAAATG
111011436 C
1 C
111011437 ACTAACTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (22 bp):
CCAAAAGAGTTATGTGTAAATG
Found at i:111012843 original size:46 final size:46
Alignment explanation
Indices: 111012793--111012968 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
111012783 TGGTTGAGCA
111012793 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
111012839 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
111012884 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
111012932 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
111012969 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:111012949 original size:93 final size:93
Alignment explanation
Indices: 111012790--111012961 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
111012780 GGATGGTTGA
*
111012790 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
111012855 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
111012883 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
111012948 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
111012962 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:111020403 original size:46 final size:46
Alignment explanation
Indices: 111020353--111020528 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
111020343 TGGTTGAGCA
111020353 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
111020399 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
111020444 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
111020492 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
111020529 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:111020509 original size:93 final size:93
Alignment explanation
Indices: 111020350--111020521 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
111020340 GGATGGTTGA
* *
111020350 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
111020415 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
111020443 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
111020508 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
111020522 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:111025530 original size:29 final size:29
Alignment explanation
Indices: 111025497--111025561 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
111025487 GTGACGAGAT
111025497 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
111025526 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
111025555 CGGCACT
1 TGGCACT
111025562 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:111033557 original size:29 final size:29
Alignment explanation
Indices: 111033524--111033588 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
111033514 GTGACGAGAT
111033524 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
111033553 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
111033582 CGGCACT
1 TGGCACT
111033589 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:111036160 original size:53 final size:53
Alignment explanation
Indices: 111035981--111036187 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
111035971 ATTAGGGTTT
* * * * * *
111035981 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAG-TTCATAAGGC
* * * * * * * * *
111036035 AAGAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGT-TCATAAGGC
* * * * *
111036090 AAAGATCCCATGCAAGACCATGCCAAGGCATGACAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCATAAGGC
* *
111036143 AAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTT
111036188 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 38 0.32
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCATAAGGC
Found at i:111045759 original size:10 final size:10
Alignment explanation
Indices: 111045726--111045773 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
111045716 ACATGTTGAC
111045726 TTTTAATTAA
1 TTTTAATTAA
*
111045736 TTTTATATCAAA
1 TTTTA-AT-TAA
*
111045748 TTTTGATTAA
1 TTTTAATTAA
*
111045758 TTTTAATTAT
1 TTTTAATTAA
111045768 TTTTAA
1 TTTTAA
111045774 CAGATTTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 21 0.68
11 4 0.13
12 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTTAATTAA
Found at i:111053908 original size:29 final size:29
Alignment explanation
Indices: 111053876--111053982 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
111053866 ATACCCTCCG
** *
111053876 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
111053905 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
111053934 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
111053963 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
111053983 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:111061830 original size:29 final size:29
Alignment explanation
Indices: 111061798--111061904 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
111061788 ATACCCTCCG
** *
111061798 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
111061827 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
111061856 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
111061885 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
111061905 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:111068168 original size:36 final size:36
Alignment explanation
Indices: 111068117--111068185 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
111068107 GACAAGTTAT
* *
111068117 AGCCAGGGCAGAATCACAGATTGAGACCTCTACCGA
1 AGCCAGGGCACAATCACAAATTGAGACCTCTACCGA
111068153 AGCCAGGGCACAATCACAAATTGAGACCTCTAC
1 AGCCAGGGCACAATCACAAATTGAGACCTCTAC
111068186 GGAATAGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.14
Consensus pattern (36 bp):
AGCCAGGGCACAATCACAAATTGAGACCTCTACCGA
Found at i:111068985 original size:18 final size:19
Alignment explanation
Indices: 111068957--111068992 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
111068947 CCAAAAAATT
111068957 AAAATTATTTTCTTTCAGA
1 AAAATTATTTTCTTTCAGA
111068976 AAAATT-TTTTCTTTCAG
1 AAAATTATTTTCTTTCAG
111068993 TTATTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (19 bp):
AAAATTATTTTCTTTCAGA
Found at i:111070737 original size:13 final size:13
Alignment explanation
Indices: 111070719--111070745 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
111070709 GCATATTATA
111070719 AACATTTTGTGTT
1 AACATTTTGTGTT
111070732 AACATTTTGTGTT
1 AACATTTTGTGTT
111070745 A
1 A
111070746 GAAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (13 bp):
AACATTTTGTGTT
Found at i:111072190 original size:40 final size:40
Alignment explanation
Indices: 111072142--111072347 Score: 301
Period size: 40 Copynumber: 5.2 Consensus size: 40
111072132 GGACTAAGAT
111072142 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
111072182 CCAAAGGCATTTGTGCTAGTTACTATGTCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
111072222 TC-AGAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGA-AGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
111072262 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
111072302 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
111072341 CCGAAGG
1 CCGAAGG
111072348 TACTTGGTTT
Statistics
Matches: 150, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.11
40 131 0.87
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:111078859 original size:13 final size:13
Alignment explanation
Indices: 111078841--111078867 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
111078831 GCATATTATA
111078841 AACATTTTGTGTT
1 AACATTTTGTGTT
111078854 AACATTTTGTGTT
1 AACATTTTGTGTT
111078867 A
1 A
111078868 GAAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (13 bp):
AACATTTTGTGTT
Found at i:111080351 original size:40 final size:40
Alignment explanation
Indices: 111080265--111080469 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
111080255 GGACTAAGAT
111080265 CCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
111080304 CCAAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
111080344 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
111080384 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
111080424 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
111080463 CCGAAGG
1 CCGAAGG
111080470 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 43 0.28
40 111 0.71
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:111081972 original size:31 final size:31
Alignment explanation
Indices: 111081931--111082045 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
111081921 CTAGTCTTGA
*
111081931 CATAT-ACTGGGCCGAAGCCTTTGCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
111081961 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
111081992 CATATCACTGGGCCGCAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
111082023 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
111082046 ATGTAAACGG
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:111082115 original size:42 final size:42
Alignment explanation
Indices: 111082068--111082159 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
111082058 TGGCCCTTAG
* *
111082068 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
111082110 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
111082152 GCCCATTT
1 GCCCATTT
111082160 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
Found at i:111082365 original size:25 final size:26
Alignment explanation
Indices: 111082307--111082367 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
111082297 CTCTTTTAAT
*
111082307 AACTGGGGCAAAGCCCTTTTCTGTTA
1 AACTGGGGCAAAGCCCTTTTCTGGTA
*
111082333 AATTGGGGCAAAGCCCTTTTC-GGTA
1 AACTGGGGCAAAGCCCTTTTCTGGTA
111082358 AACTGGGGCA
1 AACTGGGGCA
111082368 GATCCCATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTCTGGTA
Found at i:111083215 original size:27 final size:27
Alignment explanation
Indices: 111083185--111083249 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
111083175 GGGCATATTC
111083185 GTCATTTTACCATACAAGGG-TATTACA
1 GTCATTTTACCATACAAGGGCT-TTACA
* * * *
111083212 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACA
*
111083239 GTCTTTTTACC
1 GTCATTTTACC
111083250 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Found at i:111083271 original size:33 final size:32
Alignment explanation
Indices: 111083234--111083295 Score: 115
Period size: 33 Copynumber: 1.9 Consensus size: 32
111083224 TACAGGGGCT
111083234 TTACGGTCTTTTTACCTATTAGGGGTATTTTAG
1 TTACGGTCTTTTTACCTATTA-GGGTATTTTAG
111083267 TTACGGTCTTTTTACCTATTAGGGTATTT
1 TTACGGTCTTTTTACCTATTAGGGTATTT
111083296 AGTCATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.28
33 21 0.72
ACGTcount: A:0.18, C:0.13, G:0.19, T:0.50
Consensus pattern (32 bp):
TTACGGTCTTTTTACCTATTAGGGTATTTTAG
Found at i:111083372 original size:27 final size:27
Alignment explanation
Indices: 111083312--111083546 Score: 190
Period size: 27 Copynumber: 8.7 Consensus size: 27
111083302 TTCATCCTAC
* * * * * *
111083312 AAGGGTGTTTTCGTAAATCTACGAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* **
111083339 AAGGGTATTTTAGTAATTTTGTAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
111083366 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
**
111083394 CAAGGGTATTTCT-GTAATTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* *
111083421 TAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
111083448 AAGGGTATTTCGGTAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
111083475 -AGTGGTATTTCGATAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
111083502 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
111083529 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
111083547 CTATCCTACA
Statistics
Matches: 172, Mismatches: 29, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
26 22 0.13
27 118 0.69
28 17 0.10
29 14 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:111083523 original size:81 final size:80
Alignment explanation
Indices: 111083340--111083546 Score: 220
Period size: 81 Copynumber: 2.5 Consensus size: 80
111083330 CTACGAACCA
* ** * ** * * *
111083340 AGGGTATTTTAGTAATTTTGTAAACTAATGGTATTTCTATAATTTTTAGAAAGTCAAG-GGTATT
1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAA-TTTCACAAA--CTAGTGGTATT
** *
111083404 TCTGTAATTTTGTAAATT
63 TCTGTAATTTTACAAACT
*
111083422 AGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTC-
1 AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTCT
111083486 GATAATTTTACAAACT
66 G-TAATTTTACAAACT
* *
111083502 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 A-GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATT
111083547 CTATCCTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 4 0.04
80 20 0.19
81 47 0.44
82 35 0.33
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTCT
GTAATTTTACAAACT
Found at i:111083586 original size:27 final size:27
Alignment explanation
Indices: 111083397--111083579 Score: 165
Period size: 27 Copynumber: 6.8 Consensus size: 27
111083387 AGAAAGTCAA
* *** *
111083397 GGGTATTTCTGTAATTTTGTAAATTA-
1 GGGTATTTCGGTAATTTCACAAACTAG
* * * *
111083423 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTCACAAACTAG
111083450 GGGTATTTCGGTAATTTCACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACTAG
* * *
111083477 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACTAG
* *
111083504 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACTAG
* **
111083531 GGGTATTTTGGTAA-TTCTATCCTAC-AG
1 GGGTATTTCGGTAATTTC-A-CAAACTAG
*
111083558 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTCACAA
111083580 TCGAGGGTAA
Statistics
Matches: 132, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 25 0.19
27 101 0.77
28 6 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAAACTAG
Done.