Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 364 of 770
Found at i:111743410 original size:29 final size:29
Alignment explanation
Indices: 111743368--111743487 Score: 134
Period size: 29 Copynumber: 4.1 Consensus size: 29
111743358 CACTTGGCTT
* *
111743368 AATCTCATTTATATGGCCCATCAGGGCCA
1 AATCTCATTCATATGGCCCATCAGGCCCA
111743397 AATCTCATTCATATGGCCCATCAGGCCCA
1 AATCTCATTCATATGGCCCATCAGGCCCA
* *
111743426 ATTCAT-ATTCATATGGCCCATTAGGCCCA
1 AATC-TCATTCATATGGCCCATCAGGCCCA
* * * ** *
111743455 AATCACCTTTATATGGCCTGTTAGGCCCA
1 AATCTCATTCATATGGCCCATCAGGCCCA
111743484 AATC
1 AATC
111743488 ACCTTATTGA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 78 0.99
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
AATCTCATTCATATGGCCCATCAGGCCCA
Found at i:111745267 original size:29 final size:29
Alignment explanation
Indices: 111745225--111745282 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
111745215 GTATTCTGAT
111745225 TGTTCAACGGGTATTATAATTAATAATGC
1 TGTTCAACGGGTATTATAATTAATAATGC
*
111745254 TGTTGAACGGGTATTATAATTAATAATGC
1 TGTTCAACGGGTATTATAATTAATAATGC
111745283 AATGAAAGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (29 bp):
TGTTCAACGGGTATTATAATTAATAATGC
Found at i:111745422 original size:2 final size:2
Alignment explanation
Indices: 111745415--111745450 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
111745405 AAGTATATTC
*
111745415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111745451 GAACACTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111751893 original size:79 final size:81
Alignment explanation
Indices: 111751792--111751976 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
111751782 ACGACTCGCT
** * *
111751792 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
111751855 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
111751872 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
111751936 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
111751952 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
111751977 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:111751976 original size:40 final size:39
Alignment explanation
Indices: 111751785--111751976 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
111751775 GGATATAACG
* ** * *
111751785 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
111751825 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
111751865 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
111751904 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
111751944 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
111751977 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:111759917 original size:39 final size:40
Alignment explanation
Indices: 111759843--111759987 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
111759833 ACGACTCGCT
* *
111759843 CAAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
111759883 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
111759922 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
111759963 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
111759988 CATCATTCGA
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 45 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:111761951 original size:37 final size:37
Alignment explanation
Indices: 111761845--111761953 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
111761835 AGCTCAGACG
* * *
111761845 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
111761882 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
111761919 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
111761954 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:111762238 original size:50 final size:50
Alignment explanation
Indices: 111762103--111762249 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
111762093 CATCGCCTAC
* *
111762103 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
* *
111762153 ATATTTCACATTGACCTTTTGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
111762203 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGTC-CATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
111762250 TCACCACATT
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
49 5 0.06
50 83 0.93
51 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:111762299 original size:47 final size:47
Alignment explanation
Indices: 111762208--111762446 Score: 367
Period size: 47 Copynumber: 5.1 Consensus size: 47
111762198 TATATATATT
* * * *
111762208 TCACATTGACCATTCGGCTTTA-C-CACATATGCATG-TCCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCT-CACATTCA
* *
111762253 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
111762300 TCACATTGGCCATTCAGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
111762347 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
111762394 TCACAATGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
111762441 TCACAT
1 TCACAT
111762447 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 19 0.11
46 1 0.01
47 159 0.88
48 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:111762302 original size:25 final size:25
Alignment explanation
Indices: 111762274--111762351 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
111762264 ATTCGGCCTT
111762274 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
*
111762299 AT--CACAT-TGGCCAT--TCAGCCTT-
1 ATCACACATAT-G-CATGCTCA-CATTC
*
111762321 ATCACATATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
111762346 ATCACA
1 ATCACA
111762352 TTGGCCATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 6 0.15
23 12 0.29
24 11 0.27
25 12 0.29
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:111762326 original size:22 final size:22
Alignment explanation
Indices: 111762299--111762374 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
111762289 GCTCACATTC
111762299 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
111762321 ATCACATATATG-CATGCTCA-CATT
1 ATCACAT-T-GGCCAT--TCAGCCTT
*
111762345 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
111762368 ATCACAT
1 ATCACAT
111762375 ATATGCATGC
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
24 8 0.19
25 10 0.24
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:111766340 original size:40 final size:40
Alignment explanation
Indices: 111766282--111766449 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
111766272 CAATTGAATG
* *
111766282 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
111766323 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
111766362 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
111766402 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
111766442 ATATCCGG
1 ATATCCGG
111766450 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:111766420 original size:80 final size:79
Alignment explanation
Indices: 111766282--111766449 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
111766272 CAATTGAATG
* * *
111766282 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
111766347 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
111766362 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
111766426 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
111766442 ATATCCGG
1 ATATCCGG
111766450 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:111774077 original size:50 final size:50
Alignment explanation
Indices: 111773942--111774088 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
111773932 CATCGCCTAC
* *
111773942 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
* *
111773992 ATATTTCACATTGACCTTTTGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
111774042 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
111774089 TCACCACATT
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
49 6 0.07
50 82 0.92
51 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:111774138 original size:47 final size:47
Alignment explanation
Indices: 111774047--111774285 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
111774037 TATATATATT
* * * * *
111774047 TCACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
111774092 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
111774139 TCACATTGGCCATTCAGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
111774186 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
111774233 TCACAATGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
111774280 TCACAT
1 TCACAT
111774286 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 19 0.11
46 1 0.01
47 160 0.89
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:111774141 original size:25 final size:25
Alignment explanation
Indices: 111774113--111774190 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
111774103 ATTCGGCCTT
111774113 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
*
111774138 AT--CACAT-TGGCCAT--TCAGCCTT-
1 ATCACACATAT-G-CATGCTCA-CATTC
*
111774160 ATCACATATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
111774185 ATCACA
1 ATCACA
111774191 TTGGCCATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 18
0.66 0.05 0.29
Matches are distributed among these distances:
22 6 0.15
23 12 0.29
24 11 0.27
25 12 0.29
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:111774165 original size:22 final size:22
Alignment explanation
Indices: 111774138--111774213 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
111774128 GCTCACATTC
111774138 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
111774160 ATCACATATATG-CATGCTCA-CATT
1 ATCACAT-T-GGCCAT--TCAGCCTT
*
111774184 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
111774207 ATCACAT
1 ATCACAT
111774214 ATATGCATGC
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
24 8 0.19
25 10 0.24
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:111782923 original size:25 final size:24
Alignment explanation
Indices: 111782868--111782925 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
111782858 ATATATATGT
*
111782868 ATATAATACTAAGTAATAATAATA
1 ATATAATACCAAGTAATAATAATA
*
111782892 ATAATAATACCATGCTAATAAATAA-A
1 AT-ATAATACCAAG-TAAT-AATAATA
111782918 ATATAATA
1 ATATAATA
111782926 ATGATAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 7 0.24
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAATACCAAGTAATAATAATA
Found at i:111784478 original size:20 final size:20
Alignment explanation
Indices: 111784453--111784493 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
111784443 CACGAGAGTT
111784453 TGAGTTCAATCTCAATCAAC
1 TGAGTTCAATCTCAATCAAC
111784473 TGAGTTCAATCTCAATCAAC
1 TGAGTTCAATCTCAATCAAC
111784493 T
1 T
111784494 TTATTTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (20 bp):
TGAGTTCAATCTCAATCAAC
Found at i:111797129 original size:21 final size:19
Alignment explanation
Indices: 111797086--111797129 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
111797076 GATTAAATAT
*
111797086 TTTTTAATTATTTATGTTA
1 TTTTTAATTATTTATGATA
*
111797105 TTTTTAATTTGATTTATGATG
1 TTTTTAA-TT-ATTTATGATA
111797126 TTTT
1 TTTT
111797130 GGTTTTGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
20 2 0.10
21 12 0.57
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.68
Consensus pattern (19 bp):
TTTTTAATTATTTATGATA
Found at i:111800186 original size:23 final size:24
Alignment explanation
Indices: 111800172--111800216 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
111800162 TATATTATTT
*
111800172 AAAATTA-TATTTATAAATTTTAA
1 AAAATTATTATTTATATATTTTAA
111800195 AAAATTATTATTTA-ATATTTTA
1 AAAATTATTATTTATATATTTTA
111800217 TTGCTAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AAAATTATTATTTATATATTTTAA
Found at i:111801975 original size:14 final size:15
Alignment explanation
Indices: 111801958--111801986 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
111801948 TACTAAAAAA
111801958 TTTAATAA-AATAAT
1 TTTAATAATAATAAT
111801972 TTTAATAATAATAAT
1 TTTAATAATAATAAT
111801987 AACTGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAATAATAATAAT
Found at i:111804482 original size:33 final size:32
Alignment explanation
Indices: 111804379--111804473 Score: 129
Period size: 35 Copynumber: 2.9 Consensus size: 32
111804369 AAGCCCCCTC
111804379 AAAAA-AAAAACCTAACGCCAAAAAAAAAAAGA
1 AAAAAGAAAAACCTAAC-CCAAAAAAAAAAAGA
* *
111804411 AAAAAGAAAAACCTAACCCCCCCAAAAAAAGAAGA
1 AAAAAGAAAAACCTAA---CCCAAAAAAAAAAAGA
111804446 AAAAAGAAAAACCTAACCCAAAAAAAAA
1 AAAAAGAAAAACCTAACCCAAAAAAAAA
111804474 CTAAAAAAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
32 15 0.27
33 10 0.18
35 29 0.53
36 1 0.02
ACGTcount: A:0.71, C:0.20, G:0.06, T:0.03
Consensus pattern (32 bp):
AAAAAGAAAAACCTAACCCAAAAAAAAAAAGA
Found at i:111804962 original size:43 final size:44
Alignment explanation
Indices: 111804912--111805001 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
111804902 CTTGGCCGGA
111804912 TTTCCTTT-CCCCCTCCCTTCTCTCTTCTTTCTCCCTTCTTTTT
1 TTTCCTTTCCCCCCTCCCTTCTCTCTTCTTTCTCCCTTCTTTTT
111804955 TTTCCTTTCCCCCCTCCCTTCTCTCTTCTTTCTCCCTTCTTTTT
1 TTTCCTTTCCCCCCTCCCTTCTCTCTTCTTTCTCCCTTCTTTTT
111804999 TTT
1 TTT
111805002 AGGTATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 8 0.17
44 38 0.83
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (44 bp):
TTTCCTTTCCCCCCTCCCTTCTCTCTTCTTTCTCCCTTCTTTTT
Found at i:111805271 original size:13 final size:13
Alignment explanation
Indices: 111805236--111805265 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
111805226 TTTTTTGCAC
111805236 ATATCATTATTTT
1 ATATCATTATTTT
111805249 ATATCATTATTTT
1 ATATCATTATTTT
111805262 ATAT
1 ATAT
111805266 TTTTATGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (13 bp):
ATATCATTATTTT
Found at i:111805502 original size:10 final size:11
Alignment explanation
Indices: 111805463--111805502 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
111805453 ATGGTATTTA
111805463 ATATATA-TAT
1 ATATATAGTAT
111805473 ATATATA-TAT
1 ATATATAGTAT
111805483 ATATAT-GTAT
1 ATATATAGTAT
111805493 ATA-ATAGTAT
1 ATATATAGTAT
111805503 TTAAGAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 26 0.93
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (11 bp):
ATATATAGTAT
Found at i:111805514 original size:2 final size:2
Alignment explanation
Indices: 111805463--111805495 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
111805453 ATGGTATTTA
*
111805463 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
111805496 ATAGTATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:111805637 original size:43 final size:44
Alignment explanation
Indices: 111805576--111805665 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 44
111805566 TAAAATACCT
111805576 AAAAAAAAGAAGGGAGAAAGAAGAGAGAAGGGA-GGGGGAAAGG
1 AAAAAAAAGAAGGGAGAAAGAAGAGAGAAGGGAGGGGGGAAAGG
111805619 AAAAAAAAGAAGGGAGAAAGAAGAGAGAAGGGAGGGGGGAAAGG
1 AAAAAAAAGAAGGGAGAAAGAAGAGAGAAGGGAGGGGGGAAAGG
111805663 AAA
1 AAA
111805666 TCCGGCCAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 33 0.72
44 13 0.28
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (44 bp):
AAAAAAAAGAAGGGAGAAAGAAGAGAGAAGGGAGGGGGGAAAGG
Found at i:111806164 original size:17 final size:17
Alignment explanation
Indices: 111806144--111806180 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
111806134 TTTTGGTAGG
111806144 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
111806161 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
111806178 TTT
1 TTT
111806181 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:111807012 original size:87 final size:87
Alignment explanation
Indices: 111806884--111807264 Score: 371
Period size: 87 Copynumber: 4.5 Consensus size: 87
111806874 TGCTCAGCGC
*
111806884 GTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAGC
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAAC
111806948 AAATTTTGAAAATACCTCAATAT
66 AAA-TTTGAAAATACCTCAATAT
* *
111806971 GTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG--AA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAACT-TAACTTGAAAA
* *
111807033 A-AAA----AAAATACCTCAGTGT
64 ACAAATTTGAAAATACCTCAATAT
* * * * * * * * *
111807052 GTGATCTGAA-GTTCAACTCA-TTTTCGCAATATGAATTGACTCTCT-AAA-ATAGACATT-AAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAACTTA-AC-TTGAAA
* * ****
111807112 AACATAAATTGAAAATAGCTCAGCGC
63 AACA-AATTTGAAAATACCTCAATAT
111807138 GTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAAC
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAAC
* *
111807202 AGATTTCGAAAATACCTCGATAT
66 AAATTT-GAAAATACCTCAATAT
*
111807225 GT-AACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
111807265 AATTAAAACA
Statistics
Matches: 237, Mismatches: 35, Indels: 44
0.75 0.11 0.14
Matches are distributed among these distances:
77 2 0.01
78 1 0.00
79 5 0.02
80 19 0.08
81 30 0.13
82 6 0.03
85 2 0.01
86 40 0.17
87 120 0.51
88 6 0.03
89 6 0.03
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (87 bp):
GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTAACTTGAAAAAC
AAATTTGAAAATACCTCAATAT
Found at i:111807498 original size:116 final size:120
Alignment explanation
Indices: 111807232--111807596 Score: 400
Period size: 116 Copynumber: 3.0 Consensus size: 120
111807222 TATGTAACTC
* * *
111807232 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
1 AAGGCTTAACCCACCTCTCGCAATATGAGTTGAAATTAAAACAC----A-TAAAAATACCTCAGC
* * * *
111807297 GTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATAAA
61 GTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATAAA
* * *
111807357 AAGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-AC-TAAAAATACCTCAGCGTG-C
1 AAGGCTTAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACATAAAAATACCTCAGCGTGAC
* * *
111807417 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAA
66 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAA-CAAAAATAAA
*
111807473 AAGG-TTCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAG
1 AAGGCTT-AACCCACCTCTCGCAATATGAGTTGAAATTAAAACAC----A-TAAAAATACCTCAG
* * * *
111807537 CGTGCCCCGAGCCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAAT
60 CGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTGAAAAACAAAAAT
111807597 TGAAAATACC
Statistics
Matches: 206, Mismatches: 20, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
115 44 0.21
116 49 0.24
117 1 0.00
118 7 0.03
119 2 0.01
122 2 0.01
123 7 0.03
124 1 0.00
125 45 0.22
126 34 0.17
127 5 0.02
128 9 0.04
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (120 bp):
AAGGCTTAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACATAAAAATACCTCAGCGTGAC
CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATAAA
Found at i:111807572 original size:72 final size:72
Alignment explanation
Indices: 111807478--111807966 Score: 615
Period size: 72 Copynumber: 6.7 Consensus size: 72
111807468 ATTAAAAGGT
* ** * *
111807478 TCAACCCACCTCTCGCAATATGAGTTGA-AATTAAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTGT
*
111807542 CCCGAGCC
65 CCCGAGGC
** *
111807550 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTG
**
111807615 TCTTGAGGC
64 TCCCGAGGC
** * *
111807624 TCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTC
111807689 CCGAGGC
66 CCGAGGC
** * *
111807696 TCAACTCACCTCTCGCAATATGAGTTGA-AATTAAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTGT
111807760 CCCGAGGC
65 CCCGAGGC
* *
111807768 TCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTG
**
111807833 TCTTGAGGC
64 TCCCGAGGC
** * * *
111807842 TCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTTAGC-TGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTC
*
111807906 CTGAGGC
66 CCGAGGC
111807913 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAACAAAAATTGAAAA
111807967 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 45, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
71 41 0.11
72 160 0.44
73 24 0.07
74 139 0.38
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTC
CCGAGGC
Found at i:111807815 original size:146 final size:143
Alignment explanation
Indices: 111807478--111808109 Score: 665
Period size: 146 Copynumber: 4.2 Consensus size: 143
111807468 ATTAAAAGGT
* ** * *
111807478 TCAACCCACCTCTCGCAATATGAGTTGA-AATTAAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTGT
*
111807542 CCCGAGCCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACC
65 CCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAAAAATTGAAAATACC
*
111807607 TCAGCATGTCTTGAGGC
128 TCAGC-TGTCCTGAGGC
** * *
111807624 TCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTC
** ** *
111807689 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATTAAAACACAAAAATTGAAAATACCTC
66 CCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAA-ACAAAAATTGAAAATACCTC
* *
111807753 AGCGTGCCCCGAGGC
130 AGC-TGTCCTGAGGC
* *
111807768 TCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTG
** * *
111807833 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCT
64 TCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCT
*
111807898 TAGCTGTCCTGAGGC
129 CAGCTGTCCTGAGGC
111807913 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAACGGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAAC-----------AA---AAATTGA
* * **** * *
111807978 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAA
49 AAATACCTCAGCGTGT--CCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTGAAAA
* * *
111808043 CAGAAATTGAAATTACCTCAGCGTGTCTTGAGGC
111 CAAAAATTGAAAATACCTCAGC-TGTCCTGAGGC
111808077 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
111808110 TTTTTTTGAA
Statistics
Matches: 412, Mismatches: 50, Indels: 32
0.83 0.10 0.06
Matches are distributed among these distances:
144 61 0.15
145 45 0.11
146 167 0.41
147 13 0.03
157 2 0.00
160 21 0.05
162 35 0.08
163 30 0.07
164 38 0.09
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (143 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTC
CCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAAATACCTCA
GCTGTCCTGAGGC
Found at i:111807862 original size:218 final size:217
Alignment explanation
Indices: 111807478--111808109 Score: 879
Period size: 218 Copynumber: 2.8 Consensus size: 217
111807468 ATTAAAAGGT
*
111807478 TCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
1 TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
* **
111807543 CCGAGCCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
66 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
111807608 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
131 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
111807673 ATTACCTCAGCGTGTCCCGAGGC
196 ATTACCTCAGC-TGTCCCGAGGC
111807696 TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
1 TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
*
111807761 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
66 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
111807826 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
131 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
* *
111807891 ATTACCTTAGCTGTCCTGAGGC
196 ATTACCTCAGCTGTCCCGAGGC
** *
111807913 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAACGGAAATTGA
1 TCAACTCACCTCTCGCAATATGAGTTGA---AATT--AAAAC---------ACAA---AAATTGA
* * * * * * *
111807978 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACA-
49 AAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAG
* * * **
111808042 ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
112 ACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATT
111808107 TTT
177 TTT
111808110 TTTTTTTGAA
Statistics
Matches: 372, Mismatches: 23, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
217 38 0.10
218 200 0.54
220 2 0.01
222 5 0.01
231 3 0.01
234 18 0.05
235 63 0.17
236 43 0.12
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (217 bp):
TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
ATTACCTCAGCTGTCCCGAGGC
Found at i:111807965 original size:14 final size:14
Alignment explanation
Indices: 111807946--111807980 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
111807936 GTTGATTTTT
111807946 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
**
111807960 TTGAAAAACGGAAA
1 TTGAAAAACAAAAA
111807974 TTGAAAA
1 TTGAAAA
111807981 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.06, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:111808029 original size:91 final size:86
Alignment explanation
Indices: 111807876--111808054 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 86
111807866 TTGATTTTTG
* * * *
111807876 AAAACAGAAATTGAAATTACCTTAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAAACAGAAATTGAAAATACCTCAGCTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA
111807941 TTTTTTTGAAAAACAAAAATTGA
66 -TTTTTTG-AAAACAAAAATTGA
* * *
111807964 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGC-TGT--CCTGAGGCTCAACTCACCGCTCGCAATACGAGT
* *
111808029 TGATTTTTTGACAACAGAAATTGA
63 TGATTTTTTGAAAACAAAAATTGA
111808053 AA
1 AA
111808055 TTACCTCAGC
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
88 22 0.28
89 17 0.22
90 7 0.09
91 33 0.42
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (86 bp):
AAAACAGAAATTGAAAATACCTCAGCTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA
TTTTTTGAAAACAAAAATTGA
Found at i:111808104 original size:164 final size:160
Alignment explanation
Indices: 111807811--111808111 Score: 467
Period size: 164 Copynumber: 1.9 Consensus size: 160
111807801 TGAAAGACAA
* *** *
111807811 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTG
*
111807876 AAAACAGAAATTGAAATTACCTTAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
66 AAAACAGAAATTGAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
111807941 TTTTTTTGAAAAACAAAAATTGAAAAACGG
131 TTTTTTTGAAAAACAAAAATTGAAAAACGG
* * *
111807971 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA-TTT
* *
111808036 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
63 TTGAAAACAGAAATTGAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
111808101 TTGATTTTTTT
127 TTGATTTTTTT
111808112 TTTTTGAAAA
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
160 21 0.17
162 30 0.24
163 30 0.24
164 45 0.36
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (160 bp):
AAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTG
AAAACAGAAATTGAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAAAACAAAAATTGAAAAACGG
Found at i:111808112 original size:75 final size:74
Alignment explanation
Indices: 111807970--111808110 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 74
111807960 TTGAAAAACG
* *
111807970 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTT
111808035 TTTGACAACA
65 TTTGACAACA
* * * *
111808045 GAAATTGAAATTACCTCAGCGTGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
111808109 TT
66 TT
111808111 TTTTTTGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 38 0.63
75 22 0.37
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTT
TTGACAACA
Found at i:111808159 original size:30 final size:30
Alignment explanation
Indices: 111808123--111808184 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
111808113 TTTTGAAAAA
*
111808123 CAGAAATTAAAAGGCCCAACTCAACTCTCG
1 CAGAAATTAAAAAGCCCAACTCAACTCTCG
* *
111808153 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCCCAACTCAACTCTCG
111808183 CA
1 CA
111808185 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.31, G:0.11, T:0.18
Consensus pattern (30 bp):
CAGAAATTAAAAAGCCCAACTCAACTCTCG
Found at i:111808304 original size:14 final size:14
Alignment explanation
Indices: 111808281--111808315 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
111808271 TGAGTTGATT
111808281 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
111808294 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
111808308 TTTGAAAA
1 TTTGAAAA
111808316 TACCTTGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:111816081 original size:16 final size:15
Alignment explanation
Indices: 111816062--111816097 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
111816052 TTTTGGTAGG
*
111816062 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
111816078 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
111816093 TTTTT
1 TTTTT
111816098 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:111816487 original size:2 final size:2
Alignment explanation
Indices: 111816482--111816516 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
111816472 TAAATACTAT
*
111816482 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
111816517 TAAATACCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:111818217 original size:21 final size:20
Alignment explanation
Indices: 111818170--111818217 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
111818160 GGGGCACACG
111818170 GCCGTGTGACTGAGGCACAT
1 GCCGTGTGACTGAGGCACAT
*
111818190 GCTCGTGTGGACT-AGGGACATT
1 GC-CGTGT-GACTGAGGCACA-T
111818212 GCCGTG
1 GCCGTG
111818218 CGAACAGGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 15 0.62
22 7 0.29
ACGTcount: A:0.17, C:0.23, G:0.38, T:0.23
Consensus pattern (20 bp):
GCCGTGTGACTGAGGCACAT
Found at i:111818521 original size:13 final size:13
Alignment explanation
Indices: 111818503--111818535 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
111818493 CCACAAGGCT
111818503 GTGTGGCCAAGCC
1 GTGTGGCCAAGCC
*
111818516 GTGTGGCCAAGCT
1 GTGTGGCCAAGCC
111818529 GTGTGGC
1 GTGTGGC
111818536 GCCTAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.24, G:0.42, T:0.21
Consensus pattern (13 bp):
GTGTGGCCAAGCC
Found at i:111818935 original size:7 final size:6
Alignment explanation
Indices: 111818906--111818975 Score: 58
Period size: 6 Copynumber: 12.2 Consensus size: 6
111818896 CTGTTTTCCT
**
111818906 AAGAAA AAG--A AAGAAA AAGAAA AAGAAA AA-ATAA AAGAAA AACCAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGA-AA AAGAAA AAGAAA
** *
111818952 AACCAA AATAAA AAG-AA AAGAAA A
1 AAGAAA AAGAAA AAGAAA AAGAAA A
111818976 TAAAATAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
4 4 0.07
5 6 0.11
6 43 0.80
7 1 0.02
ACGTcount: A:0.80, C:0.06, G:0.11, T:0.03
Consensus pattern (6 bp):
AAGAAA
Found at i:111818953 original size:24 final size:24
Alignment explanation
Indices: 111818915--111818998 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 24
111818905 TAAGAAAAAG
*
111818915 AAAGAAAAAGAAAAAGAAAAAAT-A
1 AAAGAAAAACAAAAA-AAAAAATAA
* **
111818939 AAAGAAAAACCAAAACCAAAATAA
1 AAAGAAAAACAAAAAAAAAAATAA
111818963 AAAGAAAAGA-AAATAAAATAAAATAA
1 AAAGAAAA-ACAAA-AAAA-AAAATAA
*
111818989 GAA-AAAAACA
1 AAAGAAAAACA
111818999 TCTTAGAGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
23 5 0.11
24 25 0.53
25 8 0.17
26 9 0.19
ACGTcount: A:0.80, C:0.06, G:0.08, T:0.06
Consensus pattern (24 bp):
AAAGAAAAACAAAAAAAAAAATAA
Found at i:111822893 original size:24 final size:23
Alignment explanation
Indices: 111822861--111822907 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
111822851 TTAATCTAAA
* *
111822861 TTAATATTTGATTTTAATTATTAT
1 TTAAAATTTGAGTTTAATT-TTAT
*
111822885 TTAAAATTTGGGTTTAATTTTAT
1 TTAAAATTTGAGTTTAATTTTAT
111822908 ACTTAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60
Consensus pattern (23 bp):
TTAAAATTTGAGTTTAATTTTAT
Found at i:111824536 original size:21 final size:20
Alignment explanation
Indices: 111824510--111824572 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
111824500 ACTCACACGA
*
111824510 GCGTGTAGGGCCTTCACATG
1 GCGTGTAGGGCCTCCACATG
111824530 GCTGTGT-GTGGCCTCCACATGG
1 GC-GTGTAG-GGCCTCCACAT-G
*
111824552 GCGTGTA-GACCTCCACATG
1 GCGTGTAGGGCCTCCACATG
111824571 GC
1 GC
111824573 CTGAGCATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 3 0.08
20 13 0.35
21 18 0.49
22 3 0.08
ACGTcount: A:0.14, C:0.29, G:0.33, T:0.24
Consensus pattern (20 bp):
GCGTGTAGGGCCTCCACATG
Found at i:111827057 original size:18 final size:18
Alignment explanation
Indices: 111827030--111827067 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
111827020 CCAAAAACAC
111827030 ATTAAAAACGAGATTAAA
1 ATTAAAAACGAGATTAAA
*
111827048 ATTAAGAACGAGATTAAA
1 ATTAAAAACGAGATTAAA
111827066 AT
1 AT
111827068 ATTTTACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (18 bp):
ATTAAAAACGAGATTAAA
Found at i:111828428 original size:26 final size:26
Alignment explanation
Indices: 111828391--111828524 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
111828381 TGATACAAAT
*
111828391 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111828417 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111828443 TGATAATAGGTTAGGTAAATG-TCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
111828468 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111828493 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
111828519 TGATAA
1 TGATAA
111828525 GAATATCATG
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
24 13 0.13
25 20 0.20
26 68 0.67
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:111828496 original size:50 final size:52
Alignment explanation
Indices: 111828391--111828524 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
111828381 TGATACAAAT
111828391 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
111828443 TGATAATAGGTTAGGTAAATG-TCCATGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
111828493 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
111828525 GAATATCATG
Statistics
Matches: 79, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
50 38 0.48
51 20 0.25
52 21 0.27
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:111830562 original size:134 final size:136
Alignment explanation
Indices: 111830307--111830589 Score: 509
Period size: 134 Copynumber: 2.1 Consensus size: 136
111830297 GAGTAGTCTC
111830307 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
111830372 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTA-CA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTACCA
111830436 CTGTTA
131 CTGTTA
*
111830442 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
111830506 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTACC
111830570 ACTGTTA
130 ACTGTTA
**
111830577 CCTGAATGGGCTT
1 CCCAAATGGGCTT
111830590 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
133 37 0.26
134 67 0.47
135 39 0.27
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTACCA
CTGTTA
Found at i:111834311 original size:26 final size:26
Alignment explanation
Indices: 111834274--111834408 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
111834264 TGATACAAAT
*
111834274 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111834300 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111834326 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
111834352 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111834377 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
111834403 TGATAA
1 TGATAA
111834409 GAATTCATGT
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 24 0.23
26 79 0.77
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:111834389 original size:51 final size:52
Alignment explanation
Indices: 111834274--111834408 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
111834264 TGATACAAAT
111834274 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
111834326 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
111834377 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
111834409 GAATTCATGT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 48 0.59
52 33 0.41
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:111836447 original size:135 final size:136
Alignment explanation
Indices: 111836191--111836474 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
111836181 GAGTAGTCTC
111836191 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
111836256 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTATCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTACCA
111836321 CTGTTA
131 CTGTTA
*
111836327 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
111836391 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTACC
111836455 ACTGTTA
130 ACTGTTA
**
111836462 CCTGAATGGGCTT
1 CCCAAATGGGCTT
111836475 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
134 37 0.26
135 86 0.60
136 20 0.14
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTGGCCCAGTACCA
CTGTTA
Found at i:111841815 original size:19 final size:19
Alignment explanation
Indices: 111841771--111841815 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
111841761 GTAGTTGTTT
*
111841771 TTTATAAGAAAAAAACTTC
1 TTTATATGAAAAAAACTTC
111841790 TTTATATGAAAAAAACTTC
1 TTTATATGAAAAAAACTTC
111841809 TTTATAT
1 TTTATAT
111841816 TTTAACTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (19 bp):
TTTATATGAAAAAAACTTC
Found at i:111847455 original size:2 final size:2
Alignment explanation
Indices: 111847400--111847440 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
111847390 TAGAATGATG
111847400 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
111847441 GATAACGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:111847704 original size:14 final size:14
Alignment explanation
Indices: 111847685--111847712 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
111847675 GAGAGTATAC
111847685 TAATAGTAATAATA
1 TAATAGTAATAATA
111847699 TAATAGTAATAATA
1 TAATAGTAATAATA
111847713 ATAAGAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
TAATAGTAATAATA
Found at i:111848102 original size:3 final size:3
Alignment explanation
Indices: 111847785--111848089 Score: 214
Period size: 3 Copynumber: 99.7 Consensus size: 3
111847775 ATGATAATTG
* * *
111847785 TAA TAA TAA -AGA TAA TAA T-A TAAA TAA TAG TAA TAA TAA TGA TAG
1 TAA TAA TAA TA-A TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* * * *
111847830 TAA TAA TAA TAA -AG TGGAA -AA TGA TAA TAA TAA TACA CCAA TAA GAA
1 TAA TAA TAA TAA TAA T--AA TAA TAA TAA TAA TAA TA-A -TAA TAA TAA
* * * ** *
111847877 TGAA -AA CAA TAA -AT TTA TAA TAA CGA CAA TAGA TAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
111847922 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
111847970 TAA TAA TAA -AA GGAA TAA AAA TAA TAG TAA TAA TAA GAA TATT TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * * *
111848016 TAA TAG TAA TAA TAA CAA TAA T-A TAAA TAA TAA CATA TACA TGAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A T-AA TAA
111848064 TAA TAA TAA TAA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TA
111848090 GCAAAAATAA
Statistics
Matches: 238, Mismatches: 41, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
2 15 0.06
3 197 0.83
4 23 0.10
5 3 0.01
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:111850354 original size:25 final size:26
Alignment explanation
Indices: 111850317--111850368 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
111850307 TCAAACATGC
111850317 ATTTAGGTCAATTTA-ACCCTAGGGGT
1 ATTTAGGTCAATTTACA-CCTAGGGGT
* *
111850343 ATTTCGGT-AATTTTCACCTAGGGGT
1 ATTTAGGTCAATTTACACCTAGGGGT
111850368 A
1 A
111850369 AAACTGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (26 bp):
ATTTAGGTCAATTTACACCTAGGGGT
Found at i:111851901 original size:26 final size:26
Alignment explanation
Indices: 111851841--111851974 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
111851831 CATGAAATTC
*
111851841 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAACCTA
111851866 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
111851892 TTATCATGGAACACTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
111851918 TTATTAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
* *
111851943 TTATTATGAAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
111851969 TTATCA
1 TTATCA
111851975 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
25 47 0.47
26 54 0.53
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:111851929 original size:51 final size:52
Alignment explanation
Indices: 111851841--111851974 Score: 218
Period size: 51 Copynumber: 2.6 Consensus size: 52
111851831 CATGAAATTC
111851841 TTATCATGAAACATTTACCTAACC-ATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
* * *
111851892 TTATCATGGAACACTTACCTAACCTATTATTAT-GAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
*
111851943 TTATTATGAAACATTTACCTAACCTATTATCA
1 TTATCATGAAACATTTACCTAACCTATTATCA
111851975 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
51 68 0.91
52 7 0.09
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
Found at i:111856340 original size:14 final size:14
Alignment explanation
Indices: 111856321--111856347 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
111856311 CAGAAACTGC
111856321 CTCATATTCAGCAA
1 CTCATATTCAGCAA
111856335 CTCATATTCAGCA
1 CTCATATTCAGCA
111856348 CGGTCTTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (14 bp):
CTCATATTCAGCAA
Found at i:111856873 original size:17 final size:18
Alignment explanation
Indices: 111856853--111856892 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
111856843 TTGAGTACTA
111856853 CCTCGGCCTCGACCA-GG
1 CCTCGGCCTCGACCACGG
111856870 CCTCGGCCTCGACCACGG
1 CCTCGGCCTCGACCACGG
111856888 CCTCG
1 CCTCG
111856893 ACACGGCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.10, C:0.50, G:0.28, T:0.12
Consensus pattern (18 bp):
CCTCGGCCTCGACCACGG
Found at i:111856899 original size:11 final size:12
Alignment explanation
Indices: 111856873--111856902 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
111856863 GACCAGGCCT
111856873 CGGCCTCGACCA
1 CGGCCTCGACCA
111856885 CGGCCTCGA-CA
1 CGGCCTCGACCA
111856896 CGGCCTC
1 CGGCCTC
111856903 TTCCCCGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.13, C:0.50, G:0.27, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:111862370 original size:40 final size:40
Alignment explanation
Indices: 111862325--111862492 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
111862315 CGGAATATAA
*
111862325 CCGGATATAATCACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
111862365 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
111862405 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
111862445 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
111862485 CCGGATAT
1 CCGGATAT
111862493 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:111862475 original size:80 final size:80
Alignment explanation
Indices: 111862336--111862490 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
111862326 CGGATATAAT
* *
111862336 CACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TC
1 CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-
111862400 TTAGCCCGGATGTAGC
65 TTAGCCCGGATGTAGC
* * * * *
111862416 CACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGA
1 CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGA
111862479 TTTAGCCCGGAT
64 TTTAGCCCGGAT
111862491 ATCATTCAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
79 3 0.05
80 61 0.94
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATT
TAGCCCGGATGTAGC
Found at i:111868566 original size:28 final size:29
Alignment explanation
Indices: 111868501--111868601 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
111868491 ATAGTGAATC
* *
111868501 CGCACACTCAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
111868530 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
111868558 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
111868588 CGCACACTTAGTGC
1 CGCACACTTAGTGC
111868602 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 19 0.30
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:111877927 original size:17 final size:18
Alignment explanation
Indices: 111877905--111877939 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
111877895 GATATGATAC
*
111877905 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
111877922 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
111877940 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:111878227 original size:22 final size:21
Alignment explanation
Indices: 111878192--111878267 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
111878182 AAAAGGTATC
* *
111878192 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
111878213 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
111878236 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
111878255 TGC-AATCATATCT
1 TACAAATCATATCT
111878268 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:111878284 original size:35 final size:37
Alignment explanation
Indices: 111878221--111878299 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
111878211 ATTACAAAAT
111878221 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
111878257 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
111878292 CATATCAT
1 CATATCAT
111878300 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:111878297 original size:14 final size:15
Alignment explanation
Indices: 111878242--111878297 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
111878232 AGATTGCATA
111878242 TCATATCTAAGATTG
1 TCATATCTAAGATTG
111878257 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
111878275 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
111878292 -CATATC
1 TCATATC
111878298 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:111878307 original size:17 final size:19
Alignment explanation
Indices: 111878228--111878299 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
111878218 AATCATATCT
111878228 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
111878247 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
111878265 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
111878282 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
111878300 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:111882526 original size:40 final size:40
Alignment explanation
Indices: 111882471--111882678 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
111882461 TGAATGATAC
* * * *
111882471 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
111882511 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
111882551 CTGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
111882591 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
111882630 CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
111882671 CC-GGCTAA
1 CCGGGCTAA
111882679 ATTCTGAAGA
Statistics
Matches: 150, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 7 0.05
40 141 0.94
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:111882615 original size:80 final size:80
Alignment explanation
Indices: 111882467--111882678 Score: 327
Period size: 80 Copynumber: 2.7 Consensus size: 80
111882457 CATTTGAATG
* * * *
111882467 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCTGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
111882532 TTTGTGCGAGTTGTT
66 TTTGTGCGAGTTGCT
* * *
111882547 ATATCTGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCTGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
111882612 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
111882627 ATACCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCTGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
111882679 ATTCTGAAGA
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 6 0.05
80 113 0.95
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (80 bp):
ATACCTGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:111889897 original size:40 final size:40
Alignment explanation
Indices: 111889820--111889967 Score: 197
Period size: 40 Copynumber: 3.7 Consensus size: 40
111889810 TGAATGATAC
* * * *
111889820 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
111889860 CCGGGCTAAGACCCAAAGGTATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
111889900 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
111889940 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
111889968 TTATGGTTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:111889977 original size:80 final size:80
Alignment explanation
Indices: 111889820--111889987 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 80
111889810 TGAATGATAC
* * * * * *
111889820 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATATCCGGGCTAAGACCCAAAGGTATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGGCTATACCCGGGCTAAGACCCAAAGGCAATTG
*
111889885 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * * *
111889900 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGGCTATACCCGGGCTAAGACCCAAAGGCAATTG
*
111889965 TGCTTA-TGGTTATAT
66 TGC-GAGTGGTTATAT
111889980 CC-GGCTAA
1 CCGGGCTAA
111889988 ATTCCGAAGA
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 5 0.07
80 67 0.92
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGGCTATACCCGGGCTAAGACCCAAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:111891484 original size:42 final size:43
Alignment explanation
Indices: 111891361--111891511 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 43
111891351 ATATGTGTTA
* * * *
111891361 TCGTGTAACACCATGTTTGGGACATTGGCATCGACT-TATGATT
1 TCGTGTAAGACCACGTTTGGGACATTGGCATC-AATATTTGATT
* **
111891404 TACGTGTAAGACCACGTCTGGGACATTGGCAT-TGTATTTGATT
1 T-CGTGTAAGACCACGTTTGGGACATTGGCATCAATATTTGATT
*
111891447 TCGTGTAAGACC-C-TATTGGGACAGTGGCATCAATATTTGATT
1 TCGTGTAAGACCACGT-TTGGGACATTGGCATCAATATTTGATT
* * *
111891489 ACATGTAAGACCACGTCTGGGAC
1 TCGTGTAAGACCACGTTTGGGAC
111891512 GTTTGCATTG
Statistics
Matches: 89, Mismatches: 13, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
40 1 0.01
41 14 0.16
42 31 0.35
43 15 0.17
44 28 0.31
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGTGTAAGACCACGTTTGGGACATTGGCATCAATATTTGATT
Found at i:111897423 original size:40 final size:40
Alignment explanation
Indices: 111897368--111897589 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
111897358 CAGATGATAA
* * *
111897368 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGCT-ACTATA-T
*
111897408 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGCTACTATAT
111897448 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGCTACTATAT
* * * * *
111897488 CCGGGCTAAGTCCCGAAGGCGTTGGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGCTACTATAT
* * * * *
111897527 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGCTACTATAT
111897567 CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
111897590 TGAACTAGTG
Statistics
Matches: 163, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.21
40 125 0.77
41 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGCTACTATAT
Found at i:111897571 original size:79 final size:80
Alignment explanation
Indices: 111897408--111897589 Score: 276
Period size: 79 Copynumber: 2.3 Consensus size: 80
111897398 GTGGCTAATT
111897408 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
* * *
111897473 TGCTAGCTACTATAT
66 TGCAAGCTACCATAA
* * * * *
111897488 CCGGGCTAAGTCCCGAAGGCGTTGGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
*
111897552 TGCAAGTTACCATAA
66 TGCAAGCTACCATAA
111897567 CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
111897590 TGAACTAGTG
Statistics
Matches: 92, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 57 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATAA
Found at i:111897632 original size:119 final size:119
Alignment explanation
Indices: 111897408--111897624 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 119
111897398 GTGGCTAATT
* * *
111897408 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCG
** *
111897473 TGCTAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTGGTGCGAGTTATTATA
66 AACTAGCTACTATATCCGGGCTAACTCCCGAAGGCGTTGGTGCGAGTTATTATA
* * *
111897527 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCG
*
111897592 AACTAG-TGGCTATATCC-GGCTAAACT-CCGAAGG
66 AACTAGCT-ACTATATCCGGGCT-AACTCCCGAAGG
111897625 TACTTGGTTT
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
118 12 0.14
119 74 0.86
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCG
AACTAGCTACTATATCCGGGCTAACTCCCGAAGGCGTTGGTGCGAGTTATTATA
Found at i:111907457 original size:6 final size:6
Alignment explanation
Indices: 111907397--111907586 Score: 138
Period size: 6 Copynumber: 30.8 Consensus size: 6
111907387 TATCAAAACT
* * * * * *
111907397 AGAATC AAAATG AGAATC AGAATT AGAATT AAAATC AGGTGAT- AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * *
111907446 AAAATC AGAATC AGAATC AGAATT A-ATTAAC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC AGA--ATC AGAATC AGAATC AGAATC
* *
111907495 AGGTAA-C AGAATC AGAATC AGAACC AGAATC AGAATC AGTATC AGGTAA-C
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
111907545 AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
111907587 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 24, Indels: 30
0.73 0.12 0.15
Matches are distributed among these distances:
5 9 0.06
6 118 0.81
7 12 0.08
8 6 0.04
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:111907479 original size:25 final size:25
Alignment explanation
Indices: 111907451--111907583 Score: 172
Period size: 25 Copynumber: 5.6 Consensus size: 25
111907441 GAATCAAAAT
* * **
111907451 CAGAATCAGAATCAGAATTAATTAA
1 CAGAATCAGAATCAGTATCAGGTAA
111907476 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
*
111907501 CAGAATCAGAATCAG----A---AC
1 CAGAATCAGAATCAGTATCAGGTAA
111907519 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
111907544 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
111907569 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
111907584 AATGTGAATG
Statistics
Matches: 95, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
18 16 0.17
21 1 0.01
22 1 0.01
25 77 0.81
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:111907487 original size:43 final size:42
Alignment explanation
Indices: 111907397--111907555 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 42
111907387 TATCAAAACT
* * *
111907397 AGAATCAAAATGA-G-AATCAGAATTAGAATTAAAATCAGGTGAT-
1 AGAATCAAAATCAGGTAA-CAGAATCAGAATTAAAA-CA-G-AATC
111907440 AGAATCAAAATCA-G-AATCAGAATCAGAATTAATTAACAGAATC
1 AGAATCAAAATCAGGTAA-CAGAATCAGAATTAA--AACAGAATC
** * *
111907483 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATC
1 AGAATCAAAATCAGGTAACAGAATCAGAATTA-AAACAGAATC
**
111907526 AGAATCAGTATCAGGTAACAGAATCAGAAT
1 AGAATCAAAATCAGGTAACAGAATCAGAAT
111907556 CAGTATCAGG
Statistics
Matches: 103, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.02
43 80 0.78
44 16 0.16
45 5 0.05
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (42 bp):
AGAATCAAAATCAGGTAACAGAATCAGAATTAAAACAGAATC
Found at i:111907523 original size:68 final size:68
Alignment explanation
Indices: 111907440--111907585 Score: 238
Period size: 68 Copynumber: 2.1 Consensus size: 68
111907430 ATCAGGTGAT
* * * *
111907440 AGAATCAAAATCAGAATCAGAATCAGAATTAATTAACAGAATCAGAATCAGTATCAGGTAACAGA
1 AGAATCAGAACCAGAATCAGAATCAGAATCAAGTAACAGAATCAGAATCAGTATCAGGTAACAGA
111907505 ATC
66 ATC
* *
111907508 AGAATCAGAACCAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGA
1 AGAATCAGAACCAGAATCAGAATCAGAATCAAGTAACAGAATCAGAATCAGTATCAGGTAACAGA
111907573 ATC
66 ATC
111907576 AGAATCAGAA
1 AGAATCAGAA
111907586 TGTGAATGCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 72 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (68 bp):
AGAATCAGAACCAGAATCAGAATCAGAATCAAGTAACAGAATCAGAATCAGTATCAGGTAACAGA
ATC
Found at i:111907556 original size:43 final size:43
Alignment explanation
Indices: 111907476--111907558 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
111907466 AATTAATTAA
111907476 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
111907519 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAG
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAG
111907559 TATCAGGTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.17
Consensus pattern (43 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
Found at i:111908144 original size:27 final size:27
Alignment explanation
Indices: 111908114--111908365 Score: 260
Period size: 27 Copynumber: 9.3 Consensus size: 27
111908104 AGGGGAAAAT
* *
111908114 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
111908141 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
111908168 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
111908195 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* * * *
111908222 GTTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
111908249 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
111908276 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
111908303 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
111908330 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
111908357 GGTAATTTT
1 GGTAATTTT
111908366 GTAAATCAAT
Statistics
Matches: 196, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 6 0.03
27 183 0.93
28 7 0.04
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:111908190 original size:54 final size:54
Alignment explanation
Indices: 111908115--111908363 Score: 311
Period size: 54 Copynumber: 4.6 Consensus size: 54
111908105 GGGGAAAATG
* * * * * *
111908115 GTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
111908169 GTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* ** * *
111908222 GTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
111908277 GTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* *
111908331 GTATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
111908364 TTGTAAATCA
Statistics
Matches: 168, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 166 0.99
55 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:111908257 original size:81 final size:81
Alignment explanation
Indices: 111908118--111908356 Score: 363
Period size: 81 Copynumber: 3.0 Consensus size: 81
111908108 GAAAATGGTA
* *
111908118 ATTT-TACCCTACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
111908182 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
*
111908198 ATTTCTACCCTACAAGGGTATTTCGTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
*
111908263 ATAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* * * * ** *
111908279 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
*
111908344 ACAAGGGTATTTC
66 ACAGGGGTATTTC
111908357 GGTAATTTTG
Statistics
Matches: 144, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
80 4 0.03
81 140 0.97
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:111908379 original size:27 final size:27
Alignment explanation
Indices: 111908345--111908694 Score: 141
Period size: 27 Copynumber: 13.0 Consensus size: 27
111908335 TTCTACCCTA
111908345 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* *** *
111908372 CAATGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* ** *
111908399 CAGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGGTAATTTTGTAAAT
* ** ** **
111908426 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * ***
111908453 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * ***
111908480 CAGGGGTATTTTGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * **
111908506 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTCGGTAATTTTGTAAAT
* * ** *
111908533 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTCGGTAATTTTGTAAAT
* * * * *
111908561 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* ** *
111908588 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * * *
111908615 CAAGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTTGTAAAT
** * *
111908642 CAAGGGTATTTTAGTAATTTT-AAAAA
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * *
111908668 CTAGAGGTATTTTGGTAATTTGGTAAA
1 CAAG-GGTATTTCGGTAATTTTGTAAA
111908695 CTAAAGTATT
Statistics
Matches: 274, Mismatches: 43, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
26 10 0.04
27 260 0.95
28 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTGTAAAT
Found at i:111908387 original size:54 final size:54
Alignment explanation
Indices: 111908173--111908392 Score: 120
Period size: 54 Copynumber: 4.1 Consensus size: 54
111908163 ATTTTAGTAA
* * * ** *** * *
111908173 TTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGTTAA
1 TTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTAAAACGGTAT
* * ** * ** * * *** *
111908227 TTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCAGTAT
1 TTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTAAAACGGTAT
* ** ***
111908281 TTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAT
1 TTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTAAAACGGTAT
* * *
111908335 TTCTACCCTACAAGGGTATTTCGGTAATTTTGTA-AAT-CAATGGTAAAACGGTAA
1 TTCTACCCTACAAGGGTATTTCGGT-A-TTTCTACAATACAAGGGTAAAACGGTAT
111908389 TTCT
1 TTCT
111908393 GTAAATCAGG
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
54 132 0.95
55 2 0.01
56 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
TTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTAAAACGGTAT
Found at i:111908498 original size:54 final size:53
Alignment explanation
Indices: 111908399--111908688 Score: 287
Period size: 54 Copynumber: 5.4 Consensus size: 53
111908389 TTCTGTAAAT
* * *** ***
111908399 CAGGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGT
1 CAGGGGTATTTTGGTAATTTTACAA-ACAG-GGGTATTTTGGTAATTTTACAAAC
** * *
111908453 C-GAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAAC
*
111908507 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTACAAAC
* * *
111908561 CAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAAC
* * * * * *
111908615 CAAGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTAAAAAC
1 CAGGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAAC
* *
111908669 TAGAGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
111908689 GGTAAACTAA
Statistics
Matches: 202, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
53 2 0.01
54 197 0.98
55 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
CAGGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAAC
Found at i:111908514 original size:81 final size:80
Alignment explanation
Indices: 111908399--111908688 Score: 312
Period size: 81 Copynumber: 3.6 Consensus size: 80
111908389 TTCTGTAAAT
* * * *** ** *
111908399 CAGGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACA-AACAAGGGTATT
** * *
111908463 TCAGTAATTTCACAAAT
64 TTGGTAATTTTACAAAC
* *
111908480 CAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTT
111908545 TGGTAATTTTACAAAC
65 TGGTAATTTTACAAAC
* * * *
111908561 CAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTT
* *
111908626 TGGTGATTTTATAAAC
65 TGGTAATTTTACAAAC
* * * *
111908642 CAAGGGTATTTTAGTAATTTTAAAAACTAGAGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
111908689 GGTAAACTAA
Statistics
Matches: 176, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.01
81 170 0.97
82 5 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACAAGGGTATTTT
GGTAATTTTACAAAC
Found at i:111908695 original size:54 final size:54
Alignment explanation
Indices: 111908483--111908688 Score: 288
Period size: 54 Copynumber: 3.8 Consensus size: 54
111908473 CACAAATCAG
* * * * * *
111908483 GGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAA
* *
111908537 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAA
*
111908591 GGGTATTTTGGTAATTTTACAAACCA-AGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGA-GGTATTTTGGTAATTTTATAAACCAA
* * *
111908645 GGGTATTTTAGTAATTTTAAAAACTAGAGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTT
111908689 GGTAAACTAA
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
54 138 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTATAAACCAA
Found at i:111908697 original size:27 final size:27
Alignment explanation
Indices: 111908457--111908688 Score: 254
Period size: 27 Copynumber: 8.6 Consensus size: 27
111908447 ACAGGTCGAG
** * * *
111908457 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
* * *
111908484 GGTATTTTGGTAATTTCACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
* *
111908511 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
*
111908538 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
* *
111908565 GGTATTTTGGTGATTTTATAAACCA-A
1 GGTATTTTGGTAATTTTACAAACCAGA
111908591 GGGTATTTTGGTAATTTTACAAACCA-A
1 -GGTATTTTGGTAATTTTACAAACCAGA
* *
111908618 GGGTATTTTGGTGATTTTATAAACCA-A
1 -GGTATTTTGGTAATTTTACAAACCAGA
* * *
111908645 GGGTATTTTAGTAATTTTAAAAACTAGA
1 -GGTATTTTGGTAATTTTACAAACCAGA
111908673 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
111908689 GGTAAACTAA
Statistics
Matches: 185, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
27 184 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGA
Found at i:111913046 original size:12 final size:12
Alignment explanation
Indices: 111913025--111913154 Score: 68
Period size: 12 Copynumber: 10.6 Consensus size: 12
111913015 TATCAGAACT
* *
111913025 AGAATTAAAATG
1 AGAATCAAAATC
111913037 AGAATCAAAATC
1 AGAATCAAAATC
*
111913049 AAAATCAAAATC
1 AGAATCAAAATC
*
111913061 AG-GTGACAAAATC
1 AGAAT--CAAAATC
* *
111913074 AAAATCAAAATT
1 AGAATCAAAATC
* *
111913086 AGAATCAGAATT
1 AGAATCAAAATC
*
111913098 AGGTAA-CAGAATC
1 A-G-AATCAAAATC
**
111913111 AGAATCAGTATC
1 AGAATCAAAATC
111913123 AGGTAA-CAAAATC
1 A-G-AATCAAAATC
* *
111913136 AGAATCAGAACC
1 AGAATCAAAATC
111913148 AGAATCA
1 AGAATCA
111913155 GAATTAGGTA
Statistics
Matches: 93, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
11 5 0.05
12 60 0.65
13 23 0.25
14 5 0.05
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.18
Consensus pattern (12 bp):
AGAATCAAAATC
Found at i:111913081 original size:37 final size:37
Alignment explanation
Indices: 111913039--111913117 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
111913029 TTAAAATGAG
*
111913039 AATCAAAATCAAAATCAAAATCAGGTGACAAAATCAA
1 AATCAAAATCAAAATCAAAATCAGGTAACAAAATCAA
* * * * * *
111913076 AATCAAAATTAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAAAATCAAAATCAAAATCAGGTAACAAAATCAA
111913113 AATCA
1 AATCA
111913118 GTATCAGGTA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.56, C:0.14, G:0.11, T:0.19
Consensus pattern (37 bp):
AATCAAAATCAAAATCAAAATCAGGTAACAAAATCAA
Found at i:111913095 original size:6 final size:6
Alignment explanation
Indices: 111913070--111913208 Score: 97
Period size: 6 Copynumber: 22.5 Consensus size: 6
111913060 CAGGTGACAA
* * * *
111913070 AATCAA AATCAA AATTAG AATCAG AATTAGG TAA-CAG AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AATCA-G -AATCAG AATCAG AATCAG
* * * *
111913119 TATCAGG TAA-CAA AATCAG AATCAG AACCAG AATCAG AATTAGG TAA-CAG
1 AATCA-G -AATCAG AATCAG AATCAG AATCAG AATCAG AATCA-G -AATCAG
*
111913169 AATCAG AATCAG TATCACG TAA-CAG AATCAG AATCAG AAT
1 AATCAG AATCAG AATCA-G -AATCAG AATCAG AATCAG AAT
111913209 GTGAATGCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
5 8 0.08
6 82 0.77
7 10 0.09
8 6 0.06
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
AATCAG
Found at i:111913110 original size:19 final size:19
Alignment explanation
Indices: 111913086--111913177 Score: 89
Period size: 19 Copynumber: 4.6 Consensus size: 19
111913076 AATCAAAATT
111913086 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATTAGGTAAC
111913105 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAG-A--A-T-T-AGGTAAC
* *
111913130 AAAATCAGAATCA-G-AACC
1 AGAATCAGAATTAGGTAA-C
111913148 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATTAGGTAAC
111913167 AGAATCAGAAT
1 AGAATCAGAAT
111913178 CAGTATCACG
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
17 2 0.03
18 13 0.22
19 22 0.37
20 3 0.05
21 1 0.02
22 2 0.03
23 1 0.02
24 2 0.03
25 14 0.23
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (19 bp):
AGAATCAGAATTAGGTAAC
Found at i:111913111 original size:31 final size:31
Alignment explanation
Indices: 111913076--111913185 Score: 114
Period size: 31 Copynumber: 3.5 Consensus size: 31
111913066 ACAAAATCAA
* *
111913076 AATCAAAATTAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAATTAGGTAACAG
* * * ***
111913107 AATCAGAATCAGTATCAG-GTAACAAAATCAG
1 AATCAGAATCAGAATCAGAATTAGGTAA-CAG
*
111913138 AATCAGAACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAATTAGGTAACAG
*
111913169 AATCAGAATCAGTATCA
1 AATCAGAATCAGAATCA
111913186 CGTAACAGAA
Statistics
Matches: 60, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
30 4 0.07
31 52 0.87
32 4 0.07
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATTAGGTAACAG
Found at i:111913124 original size:62 final size:62
Alignment explanation
Indices: 111913058--111913204 Score: 231
Period size: 62 Copynumber: 2.4 Consensus size: 62
111913048 CAAAATCAAA
* * **
111913058 ATCAGGTGACAAAATCAAAATCAAAATTAGAATCAGAATTAGGTAACAGAATCAGAATCAGT
1 ATCAGGTAACAAAATCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGT
*
111913120 ATCAGGTAACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGT
1 ATCAGGTAACAAAATCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGT
* *
111913182 ATCACGTAACAGAATCAGAATCA
1 ATCAGGTAACAAAATCAGAATCA
111913205 GAATGTGAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 78 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (62 bp):
ATCAGGTAACAAAATCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGT
Found at i:111913126 original size:25 final size:25
Alignment explanation
Indices: 111913079--111913145 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
111913069 AAATCAAAAT
* *
111913079 CAAAATTAGAATCAGAATTAGGTAA
1 CAAAATCAGAATCAGAATCAGGTAA
* *
111913104 CAGAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAGAATCAGGTAA
111913129 CAAAATCAGAATCAGAA
1 CAAAATCAGAATCAGAA
111913146 CCAGAATCAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (25 bp):
CAAAATCAGAATCAGAATCAGGTAA
Found at i:111913145 original size:37 final size:37
Alignment explanation
Indices: 111913104--111913199 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 37
111913094 AATTAGGTAA
*
111913104 CAGAATCAGAATCAGTATCAGGTAACAAAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAAAATCAGAAT
* * *
111913141 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGTAACAAAATCAGAAT
*
111913178 CAGTATCACGTAA-CAGAATCAG
1 CAGAATCA-G-AATCAGAATCAG
111913200 AATCAGAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
37 39 0.78
38 9 0.18
39 2 0.04
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGGTAACAAAATCAGAAT
Found at i:111913175 original size:25 final size:25
Alignment explanation
Indices: 111913141--111913208 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
111913131 AAATCAGAAT
* * *
111913141 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCACGTAA
*
111913166 CAGAATCAGAATCAGTATCACGTAA
1 CAGAATCAGAATCAGAATCACGTAA
111913191 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
111913209 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCACGTAA
Found at i:111913201 original size:31 final size:30
Alignment explanation
Indices: 111913104--111913208 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 30
111913094 AATTAGGTAA
*
111913104 CAGAATCAGAATCAGTATCAGGTAACAAAAT
1 CAGAATCAGAATCAGTATCA-GTAACAGAAT
* * *
111913135 CAGAATCAGAACCAGAATCAG-AATTAGGTAA-
1 CAGAATCAGAATCAGTATCAGTAA-CA-G-AAT
111913166 CAGAATCAGAATCAGTATCACGTAACAGAAT
1 CAGAATCAGAATCAGTATCA-GTAACAGAAT
111913197 CAGAATCAGAAT
1 CAGAATCAGAAT
111913209 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
29 2 0.03
30 4 0.07
31 49 0.80
32 4 0.07
33 2 0.03
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (30 bp):
CAGAATCAGAATCAGTATCAGTAACAGAAT
Found at i:111913390 original size:2 final size:2
Alignment explanation
Indices: 111913383--111913408 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
111913373 ACCAGAACAG
111913383 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
111913409 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111913505 original size:27 final size:26
Alignment explanation
Indices: 111913457--111913508 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
111913447 GCGAGGCTAC
*
111913457 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
111913483 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
111913509 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:111913783 original size:27 final size:27
Alignment explanation
Indices: 111913753--111914031 Score: 255
Period size: 27 Copynumber: 10.3 Consensus size: 27
111913743 GGGATAAAAT
* *
111913753 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
111913780 GGTAATTCTACCCTA-AAGGGGTATTTT
1 GGTAATTTTACCCTACAA-GGGTATTTC
* * **
111913807 AGTAATTCTACCCTACTGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
111913834 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
111913861 GTTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
111913888 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
111913915 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
111913942 GGT-ATTTCTACCTTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
111913969 GGT-ATTTCTACCCTGCAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
111913996 AGT-ATTTCTACCCTACAAGAGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
111914023 GGTAATTTT
1 GGTAATTTT
111914032 GTAAATCAAG
Statistics
Matches: 215, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.04
27 200 0.93
28 7 0.03
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:111913812 original size:54 final size:54
Alignment explanation
Indices: 111913753--111914031 Score: 305
Period size: 54 Copynumber: 5.2 Consensus size: 54
111913743 GGGATAAAAT
* * * * * *
111913753 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTCAGTATTTCTACCCTAAAGGGGTATTTC
* * *
111913807 AGTAATTCTACCCTACTGGGGTATTTCAGTATTTCTACCCTACAA-GGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTCAGTATTTCTACCCTA-AAGGGGTATTTC
* * * * * *
111913861 GTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTCAGTATTTCTACCCTAAAGGGGTATTTC
* * *
111913915 GGT-ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTCAGTATTTCTACCCTAAAGGGGTATTTC
* * *
111913969 GGT-ATTTCTACCCTGCAAGGGTATTTCAGTATTTCTACCCTACAA-GAGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTCAGTATTTCTACCCTA-AAGGGGTATTTC
111914023 GGTAATTTT
1 GGTAATTTT
111914032 GTAAATCAAG
Statistics
Matches: 191, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.02
54 180 0.94
55 7 0.04
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (54 bp):
GGTAATTTTACCCTACAGGGGTATTTCAGTATTTCTACCCTAAAGGGGTATTTC
Found at i:111913896 original size:81 final size:81
Alignment explanation
Indices: 111913757--111914029 Score: 395
Period size: 81 Copynumber: 3.4 Consensus size: 81
111913747 TAAAATGGTA
* *
111913757 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
*
111913821 ACTGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* *
111913837 ATTTCTACCCTACAAGGGTATTTCGTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
*
111913902 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* * * * ** *
111913918 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCTTACAGGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
* *
111913983 GCAAGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
*
111913999 ATTTCTACCCTACAAGAGTATTTCGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATT
111914030 TTGTAAATCA
Statistics
Matches: 172, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 4 0.02
81 168 0.98
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:111914041 original size:27 final size:27
Alignment explanation
Indices: 111914011--111914284 Score: 104
Period size: 27 Copynumber: 10.1 Consensus size: 27
111914001 TTCTACCCTA
*
111914011 CAAGAGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
*** *
111914038 CAAGGGTAAAACCGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* ** *
111914065 CAGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGGTAATTTTGTAAAT
* ** ** **
111914092 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * ***
111914119 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * ***
111914146 CAGGGGTATTTTGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * ** *
111914172 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTCGGTAATTTTGTAAAT
* * **
111914200 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTGTAAAT
* * ** *
111914226 CCAGAGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTGTAAAT
* * * *
111914254 CAAGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTTGTAAAT
111914281 CAAG
1 CAAG
111914285 TGTGACAGCC
Statistics
Matches: 209, Mismatches: 32, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
26 6 0.03
27 199 0.95
28 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTGTAAAT
Found at i:111914164 original size:54 final size:53
Alignment explanation
Indices: 111914068--111914282 Score: 225
Period size: 54 Copynumber: 4.0 Consensus size: 53
111914058 TGTAAATCAG
* ** *** ** *
111914068 GGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACA-AACCA
** * * * *
111914122 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
111914175 GGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
* * *
111914229 GAGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCA
1 G-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
111914283 AGTGTGACAG
Statistics
Matches: 137, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
53 3 0.02
54 133 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.37
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCA
Found at i:111914265 original size:81 final size:82
Alignment explanation
Indices: 111914051--111914282 Score: 252
Period size: 81 Copynumber: 2.9 Consensus size: 82
111914041 GGGTAAAACC
** * ** * ***
111914051 GTAATTTTGTAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
***
111914116 GGTC-GAGGGTATTTCA
66 AACCAGAGGGTATTTCA
* * * *
111914132 GTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
**
111914197 AACCAG-GGGTATTTTG
66 AACCAGAGGGTATTTCA
* * * *
111914213 GTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
111914278 AACCA
66 AACCA
111914283 AGTGTGACAG
Statistics
Matches: 124, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
81 123 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (82 bp):
GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACA
AACCAGAGGGTATTTCA
Found at i:111915997 original size:40 final size:40
Alignment explanation
Indices: 111915938--111916145 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
111915928 CAATTGAATG
* * * *
111915938 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
111915978 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
111916018 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
111916058 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
111916098 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
111916138 ATATCCGG
1 ATATCCGG
111916146 TTGTATTCTG
Statistics
Matches: 144, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:111916076 original size:80 final size:80
Alignment explanation
Indices: 111915940--111916145 Score: 252
Period size: 80 Copynumber: 2.6 Consensus size: 80
111915930 ATTGAATGAT
* * ** * * *
111915940 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
111916005 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
111916020 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
111916085 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
111916100 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
111916146 TTGTATTCTG
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 107 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:111921145 original size:41 final size:43
Alignment explanation
Indices: 111921098--111921232 Score: 116
Period size: 43 Copynumber: 3.2 Consensus size: 43
111921088 CGGTACGAAA
* * *
111921098 CCTGCTAGACTTTAAG-TCTGA-ACTCA-TTCACTGGCATT-TCG
1 CCTGCTAGACTTGAAGCTC-GATA-TCATTTCACCGGCATTATAG
*
111921139 CCTGCTAGGCTTGAAGCTCGATATCATTTCACCGGCATTATAG
1 CCTGCTAGACTTGAAGCTCGATATCATTTCACCGGCATTATAG
* ** * * * *
111921182 CCTGCTAGGCCCGAAGCCCGATATTATCTCACCGTCATTATAG
1 CCTGCTAGACTTGAAGCTCGATATCATTTCACCGGCATTATAG
*
111921225 CCTACTAG
1 CCTGCTAG
111921233 GCCCGAAGCC
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
41 19 0.24
42 14 0.18
43 46 0.58
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (43 bp):
CCTGCTAGACTTGAAGCTCGATATCATTTCACCGGCATTATAG
Found at i:111921191 original size:43 final size:43
Alignment explanation
Indices: 111921124--111921294 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
111921114 TCTGAACTCA
* * ** *
111921124 TTCACTGGCATT-TCGCCTGCTAGGCTTGAAGCTCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
111921166 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * * *
111921209 CTCACCGTCATTATAGCCTACTAGGCCCGAAGCCCAATAAT-ATT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT-ATCA-T
* * * *
111921253 ATTCACCAGC-TTAAAGCTTGCTAGG-CCGAGGCCCGAATATCA
1 -TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
111921295 CATTTCGATA
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
42 11 0.10
43 70 0.67
44 18 0.17
45 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:111922920 original size:14 final size:15
Alignment explanation
Indices: 111922891--111922920 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
111922881 CAAAATTTAG
111922891 ACATGATACTTTCAC
1 ACATGATACTTTCAC
111922906 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
111922920 A
1 A
111922921 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:111928199 original size:40 final size:40
Alignment explanation
Indices: 111928150--111928397 Score: 322
Period size: 40 Copynumber: 6.2 Consensus size: 40
111928140 TCTTCGGAAT
* *
111928150 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAA-TGCCTTCGGGTC
* * *** * *
111928189 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
111928229 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
*
111928269 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
*
111928309 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
* ** *
111928349 TTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATA-ACAACTAGCACGAATGCCTTCGGGTC
111928389 TTAGCCCGG
1 TTAGCCCGG
111928398 GTATCATTCT
Statistics
Matches: 185, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.02
40 179 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
Found at i:111931522 original size:71 final size:71
Alignment explanation
Indices: 111931436--111931599 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
111931426 CGATTTGTCT
111931436 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
111931501 CTTTCA
66 CTTTCA
111931507 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
111931572 CTTTCA
66 CTTTCA
111931578 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
111931600 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Done.