Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 367 of 770
Found at i:112574562 original size:33 final size:34
Alignment explanation
Indices: 112574480--112574586 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 34
112574470 CATGTAGTTA
112574480 ATGTTCTAACAATCTTAATATTTTTAATGCATGTAGTT
1 ATGTTCTAACAATCTTAATATTTTTAATGCA--T-G-T
112574518 AATGTTCTAACAATCTTAATATTTTTAATGCATGT
1 -ATGTTCTAACAATCTTAATATTTTTAATGCATGT
112574553 -TGTTCTAACAATCTTAATATTTTTAATGCATGT
1 ATGTTCTAACAATCTTAATATTTTTAATGCATGT
112574586 A
1 A
112574587 ACTTTATATT
Statistics
Matches: 67, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
33 33 0.49
35 1 0.01
36 1 0.01
37 1 0.01
39 31 0.46
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (34 bp):
ATGTTCTAACAATCTTAATATTTTTAATGCATGT
Found at i:112576220 original size:27 final size:27
Alignment explanation
Indices: 112576183--112576240 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
112576173 AAAGGAAATG
112576183 TCAAAACAGTACTACATTTAATGAAAA
1 TCAAAACAGTACTACATTTAATGAAAA
*
112576210 TCAAAATAGTACTACATTTAATGAAAA
1 TCAAAACAGTACTACATTTAATGAAAA
112576237 TCAA
1 TCAA
112576241 TGTGTAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (27 bp):
TCAAAACAGTACTACATTTAATGAAAA
Found at i:112581618 original size:40 final size:39
Alignment explanation
Indices: 112581523--112581661 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 39
112581513 GGACTAAGAT
* * ** *
112581523 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCCAAG-G
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
112581562 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
112581602 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
112581642 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
112581662 CGTTATATCC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.37
40 50 0.58
41 4 0.05
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:112581685 original size:79 final size:79
Alignment explanation
Indices: 112581522--112581687 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
112581512 TGGACTAAGA
* * * *
112581522 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCCAAGGCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCCAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
112581587 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * *** **
112581601 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGCCAAG-CCCGAAGGCATTTGAGCGAGTCAC
* *
112581665 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
112581680 TCCGAAGG
1 TCCGAAGG
112581688 TACGTGATTC
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 44 0.63
80 26 0.37
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCCAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:112588791 original size:23 final size:23
Alignment explanation
Indices: 112588746--112588797 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
112588736 ATTTGTAATA
112588746 ATAATATATACACAATATGGTAT
1 ATAATATATACACAATATGGTAT
* * *
112588769 TTAATATATATATATATAT-GTAT
1 ATAATATATACACA-ATATGGTAT
112588792 ATAATA
1 ATAATA
112588798 GTATTTAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (23 bp):
ATAATATATACACAATATGGTAT
Found at i:112589393 original size:16 final size:15
Alignment explanation
Indices: 112589374--112589409 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
112589364 TTTCTTCTTT
112589374 TTTTTTGGGGGTTAGG
1 TTTTTTGGGGG-TAGG
*
112589390 TTTTTTTGGGGTAGG
1 TTTTTTGGGGGTAGG
112589405 TTTTT
1 TTTTT
112589410 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.06, C:0.00, G:0.36, T:0.58
Consensus pattern (15 bp):
TTTTTTGGGGGTAGG
Found at i:112589393 original size:17 final size:15
Alignment explanation
Indices: 112589373--112589409 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 15
112589363 TTTTCTTCTT
112589373 TTTTTTTGGGGGTTAGG
1 TTTTTTT-GGGG-TAGG
112589390 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
112589405 TTTTT
1 TTTTT
112589410 CTTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
16 4 0.20
17 7 0.35
ACGTcount: A:0.05, C:0.00, G:0.35, T:0.59
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:112592495 original size:30 final size:30
Alignment explanation
Indices: 112592459--112592559 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
112592449 GACAAGATTG
* * *
112592459 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
112592489 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
112592517 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
112592546 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
112592560 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:112592571 original size:29 final size:28
Alignment explanation
Indices: 112592488--112592563 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
112592478 AAAATTGTAC
* *
112592488 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
112592516 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
112592545 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
112592564 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:112602681 original size:40 final size:40
Alignment explanation
Indices: 112602615--112602765 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
112602605 AAATTGAATG
* * *
112602615 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
112602654 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
112602694 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
112602734 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
112602766 ACGTGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:112602779 original size:40 final size:40
Alignment explanation
Indices: 112602652--112602781 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
112602642 ATGCTGGAAA
* * *
112602652 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
112602692 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
112602732 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
112602772 TTATATCCGG
1 TTATATCCGG
112602782 TTATATTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:112610671 original size:40 final size:39
Alignment explanation
Indices: 112610605--112610755 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
112610595 AAATTGAATG
* * *
112610605 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
112610644 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
112610684 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
112610724 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
112610756 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:112610769 original size:40 final size:39
Alignment explanation
Indices: 112610642--112610771 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
112610632 ATGCTGGAAA
* *
112610642 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
112610682 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
112610722 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
112610762 TTATATCCGG
1 TTATATCCGG
112610772 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:112618198 original size:3 final size:3
Alignment explanation
Indices: 112618192--112618221 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
112618182 ACAACGAAAG
*
112618192 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
112618222 AGGTAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:112618451 original size:26 final size:26
Alignment explanation
Indices: 112618384--112618452 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
112618374 AATCAAATCA
* *
112618384 AATATATAAAACAATTTGAAATAAAT
1 AATATATAAAACAGTTTAAAATAAAT
112618410 AATATATAAAACAGTTTAAAATAAAT
1 AATATATAAAACAGTTTAAAATAAAT
* *
112618436 AATATATATAATAGTTT
1 AATATATAAAACAGTTT
112618453 GAAGCTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (26 bp):
AATATATAAAACAGTTTAAAATAAAT
Found at i:112624778 original size:27 final size:27
Alignment explanation
Indices: 112624740--112624809 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 27
112624730 GTACCTAGAC
*
112624740 CCCCTA-ATTGATAAAATGACTAAAATG
1 CCCCTATA-TGATAAAATAACTAAAATG
*
112624767 CCCCTATATGATAAAATAACTGAAATG
1 CCCCTATATGATAAAATAACTAAAATG
112624794 CCCCTTTATATGATAA
1 CCCC--TATATGATAA
112624810 GTAACTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 27 0.71
28 1 0.03
29 10 0.26
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTATATGATAAAATAACTAAAATG
Found at i:112628254 original size:27 final size:27
Alignment explanation
Indices: 112628223--112628277 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
112628213 AGACCCTAAT
*
112628223 TGATAAAATGACCGAAATGCCCCTATA
1 TGATAAAATGACCAAAATGCCCCTATA
* *
112628250 TGATAAAATGACTAAAATGCCCTTATA
1 TGATAAAATGACCAAAATGCCCCTATA
112628277 T
1 T
112628278 ATGATAAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (27 bp):
TGATAAAATGACCAAAATGCCCCTATA
Found at i:112629470 original size:43 final size:43
Alignment explanation
Indices: 112629422--112629579 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
112629412 ATTGCCGAGA
112629422 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
112629465 TGTGATTACATGTAAGGCCATTTCTGGGACATTGGCATCAT-TA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTAT
* *** * *
112629508 TATGATTTTGTGTAAGACCGTGTCTGGGACATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
112629550 ATGTGATAACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
112629580 TATGGCTTTG
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
43 89 0.96
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:112631623 original size:18 final size:18
Alignment explanation
Indices: 112631589--112631622 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
112631579 CACTGTATCA
112631589 CACTGTTTCTTTCTTTTT
1 CACTGTTTCTTTCTTTTT
112631607 CACTGTTT-TTT-TTTTT
1 CACTGTTTCTTTCTTTTT
112631623 TGGAAACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 3 0.19
18 8 0.50
ACGTcount: A:0.06, C:0.18, G:0.06, T:0.71
Consensus pattern (18 bp):
CACTGTTTCTTTCTTTTT
Found at i:112632639 original size:3 final size:3
Alignment explanation
Indices: 112632631--112632677 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
112632621 CAACTAAAAT
* *
112632631 TAA TAA TAA TAG TAA TAG TAA TAA TAA TAA TAAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
112632676 TA
1 TA
112632678 TCAAAATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:112634876 original size:23 final size:23
Alignment explanation
Indices: 112634850--112634901 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
112634840 TAATTTTTAA
112634850 ATTTAGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
* * *
112634873 ATTTTGAATTATTTAGTGATAGT
1 ATTTAGAATTATTTAATGATAAT
112634896 ATTTAG
1 ATTTAG
112634902 GAAAAATCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAATGATAAT
Found at i:112635744 original size:22 final size:19
Alignment explanation
Indices: 112635715--112635763 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
112635705 TATCCATTTA
*
112635715 TTTTATTTTCTTAAATTTATT
1 TTTTATTTTC--AAATATATT
112635736 TTTTCATTTTCAAATATA-T
1 TTTT-ATTTTCAAATATATT
112635755 TTTTATTTT
1 TTTTATTTT
112635764 ATTTTACTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.19
19 5 0.19
20 6 0.23
21 4 0.15
22 6 0.23
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTATTTTCAAATATATT
Found at i:112642740 original size:22 final size:23
Alignment explanation
Indices: 112642712--112642762 Score: 95
Period size: 22 Copynumber: 2.3 Consensus size: 23
112642702 TAATTTTTAA
112642712 ATTTAGAATTATTTAGTGA-AAT
1 ATTTAGAATTATTTAGTGATAAT
112642734 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
112642757 ATTTAG
1 ATTTAG
112642763 GAAAAATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:112643772 original size:20 final size:18
Alignment explanation
Indices: 112643737--112643790 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
112643727 TTATTTATCC
112643737 ATTTATTTTATTTTTTTAA
1 ATTTATTTT-TTTTTTTAA
*
112643756 ATTTATTTTTTCATTTTTGA
1 ATTTATTTTTT--TTTTTAA
*
112643776 ATCTATTTTTATTTT
1 ATTTATTTTT-TTTT
112643791 ATTTATTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 2 0.07
19 12 0.40
20 15 0.50
21 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTATTTTTTTTTTTAA
Found at i:112645625 original size:27 final size:27
Alignment explanation
Indices: 112645606--112645778 Score: 231
Period size: 27 Copynumber: 6.4 Consensus size: 27
112645596 ATTACCAAAG
*
112645606 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
112645633 CACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
112645660 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
112645687 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
112645714 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
112645741 TACCCTC-AGTTTATAAAATTACCATTT
1 TACCCTCGA-TTTACAGAATTACCATTT
112645768 TACCCTCGATT
1 TACCCTCGATT
112645779 ATGAAATTAC
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 125 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:112645698 original size:81 final size:81
Alignment explanation
Indices: 112645582--112645778 Score: 288
Period size: 81 Copynumber: 2.4 Consensus size: 81
112645572 ACTAAAATGT
* * *** *
112645582 CCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTCACCCTTGATTTAC
1 CCTCAGTTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
112645647 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
* * * *
112645663 CCTC-GATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 CCTCAG-TTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
112645727 CAAAATTACCATTTTAC
65 CAAAATTACCATTTTAC
112645744 CCTCAGTTTATAAAATTACCATTTTACCCTCGATT
1 CCTCAGTTTATAAAATTACCATTTTACCCTCGATT
112645779 ATGAAATTAC
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
81 101 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (81 bp):
CCTCAGTTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
AAAATTACCATTTTAC
Found at i:112645824 original size:52 final size:52
Alignment explanation
Indices: 112645754--112645903 Score: 146
Period size: 52 Copynumber: 2.8 Consensus size: 52
112645744 CCTCAGTTTA
**
112645754 TAAAATTACCATTTTACCCTCGA-TTATGAAATTACTGAAATACCTCCAGTTG
1 TAAAATTACCA-AATACCCTCGAGTTATGAAATTACTGAAATACCTCCAGTTG
* * ** * *
112645806 TAAAATTACCAAAGTACCC-CGATTTATAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCAAA-TACCCTCGAGTTATGAAATTACTGAAATA-CCTCCAGTTG
112645859 TAAAATTACCGAAATACCCTC-AGTT-TGCAAAATTACTGAAATACC
1 TAAAATTACC-AAATACCCTCGAGTTATG--AAATTACTGAAATACC
112645904 CTCGATCAAT
Statistics
Matches: 80, Mismatches: 11, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
51 3 0.04
52 33 0.41
53 28 0.35
54 16 0.20
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (52 bp):
TAAAATTACCAAATACCCTCGAGTTATGAAATTACTGAAATACCTCCAGTTG
Found at i:112645931 original size:27 final size:27
Alignment explanation
Indices: 112645567--112645931 Score: 193
Period size: 27 Copynumber: 13.6 Consensus size: 27
112645557 TTAGTTTACC
* ** * *
112645567 AAATTACTAAAATGTCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
112645594 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *** * *
112645621 GAATTACC-GTTTCACCCTTGATTTACA
1 AAATTACCAAAAT-ACCCTCGATTTATA
***
112645648 AAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *** * *
112645675 GAATTACCATTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** *
112645702 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
***
112645729 AAATTACCATTTTACCCTC-AGTTTATA
1 AAATTACCAAAATACCCTCGA-TTTATA
*** *
112645756 AAATTACCATTTTACCCTCGA-TTATG
1 AAATTACCAAAATACCCTCGATTTATA
** * * *
112645782 AAATTACTGAAATA-CCTCCAGTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
112645808 AAATTACCAAAGTACCC-CGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
112645834 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* **
112645861 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACCAAAATACCCTCGA-TTTATA
** **
112645888 AAATTACTGAAATACCCTCGATCAATA
1 AAATTACCAAAATACCCTCGATTTATA
112645915 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
112645932 CTGTAGGGTA
Statistics
Matches: 274, Mismatches: 55, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
25 5 0.02
26 50 0.18
27 214 0.78
28 5 0.02
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:112645946 original size:27 final size:27
Alignment explanation
Indices: 112645916--112646219 Score: 387
Period size: 27 Copynumber: 11.3 Consensus size: 27
112645906 CGATCAATAA
112645916 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
112645943 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
112645970 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
****
112645997 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
112646024 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
112646051 AAATA-CAGAAATACCCCTGTAGGGTAG
1 AATTACCA-AAATACCCCTGTAGGGTAG
* **
112646078 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
112646105 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
112646132 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
112646159 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
112646186 AATTACCAAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
112646212 AATTACCA
1 AATTACCA
112646220 TTTTGCCCTT
Statistics
Matches: 246, Mismatches: 29, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
26 18 0.07
27 227 0.92
28 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:112646696 original size:22 final size:22
Alignment explanation
Indices: 112646644--112646708 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
112646634 TTAAAGCCTA
* *
112646644 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
112646666 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
112646688 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
112646709 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:112646896 original size:27 final size:27
Alignment explanation
Indices: 112646866--112646967 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
112646856 ATTCTGTTAA
* *
112646866 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
112646893 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
112646920 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
112646947 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
112646968 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:112647133 original size:6 final size:6
Alignment explanation
Indices: 112647124--112647310 Score: 181
Period size: 6 Copynumber: 30.8 Consensus size: 6
112647114 CTGTCACGTA
* *
112647124 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* *
112647172 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
112647221 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
112647270 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
112647311 CATTTTGGTT
Statistics
Matches: 151, Mismatches: 14, Indels: 32
0.77 0.07 0.16
Matches are distributed among these distances:
5 11 0.07
6 127 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:112647306 original size:24 final size:24
Alignment explanation
Indices: 112647124--112647310 Score: 216
Period size: 24 Copynumber: 7.5 Consensus size: 24
112647114 CTGTCACGTA
112647124 ATTCTGATTCTGATT-CTGATTCTG
1 ATTCTGATTCTG-TTACTGATTCTG
**
112647148 ATTCTG-TTACTAATACTGATTCTG
1 ATTCTGATT-CTGTTACTGATTCTG
112647172 ATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGTTACTGATTCTG
* *
112647196 ATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGTTA-CTGATTCTG
* *
112647221 ATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGTTA-CTGATTCTG
112647246 ATTCTGATTCTGTTACTAATATTGATTCTG
1 ATTCTGATTCTGTTAC------TGATTCTG
112647276 ATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGTTACTGATTCTG
112647300 ATTCTGATTCT
1 ATTCTGATTCT
112647311 CATTTTGGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 20
0.84 0.05 0.12
Matches are distributed among these distances:
23 3 0.02
24 70 0.48
25 49 0.34
30 23 0.16
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (24 bp):
ATTCTGATTCTGTTACTGATTCTG
Found at i:112648966 original size:520 final size:517
Alignment explanation
Indices: 112648006--112649301 Score: 1514
Period size: 520 Copynumber: 2.5 Consensus size: 517
112647996 TAACGAATAT
* * ** * * * * *
112648006 ACGAATGAGTTTTGATGTCATTGTTGATCCATGACGTTTGAATTAGGTCTTTCAATCAAAATAAT
1 ACGAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGTC-CTC-AT--AAATAAC
* * * ** * ** *
112648071 AGTCAAAAGTTAGTATAAAACATTCAACTATGCCACCATTAACATTCAGCCAAAGTATAAAATAA
62 ACTCAAAAGTTAGTATAGAATATTCTGCTATGCCA-CAGTAACATTTGGCCAAAGTAAAAAATAA
* * **
112648136 AGGAAGAAGGAAACAAGATAAGATCTGATTGAAAGAAAAACTACTTACTCCACAAGAACGACAGA
126 AGGAAGAAGGAAACTAGATAAGATCTGACT-AAAGAAAAACTACTTACTCCACCGGAACGACAGA
* *
112648201 TTCGAAGAACCAATGAAAAATCCAAGCAGTACAGATGAACTCAGCCAGAATAATTTAATCATATG
190 TTCGAAGAACCAATGAAAAATCCAAGCAGTACAGATGAATTCAGCCAGAATAA-TTAATCACATG
* * * * *
112648266 TATAAAGTATACCATTTTTTAAACACTAATACACAAAAAGGTCAGACCCACACCTAATTAATTCT
254 AACAAAATATACCATTTTTTAAACACTAATACACAAAAACGTCAGACCCACACCTAATT-ATACT
* * *
112648331 AATCCGATGCACTAACGTAATTACAACTTCTACAACTTAGATCTAGGCAGCTCTAAATCAGATCT
318 AATCCGATCCACTAACGTAATTACAACTTCTACAACATAGATCTAGACAGCTCTAAATCAGATCT
*
112648396 GTACACAACATGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTTGACCAAA
383 GTACACAACATGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTCGACCAAA
* ** *
112648461 ACAAGGATTAATAATT-TCAAATTAGATTCAATTTTTGGTCACTTACTTACTCTATCTCGATTTA
448 ACAAGGATTAA-AATTGTCAAATTAGATACAATTTTTAATCACTTAC-T--T-TATCTCGATATA
*
112648525 CAATGAAGAT
508 CAATGAAGAC
* * *
112648535 ACGATTGAGTTTAGATGTCACTGCTGATCCATGATGTTTGGATTAGGT-C-C-T-AATAACACTC
1 ACGAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGTCCTCATAAATAACACTC
* * * *
112648596 AAAAGCTAGTATAGAATATTCTGCTATGCCACTAGTAACATTTGGCCAAAGAAAAAAATCAAGGG
66 AAAAGTTAGTATAGAATATTCTGCTATGCCAC-AGTAACATTTGGCCAAAGTAAAAAATAAAGGA
* * *
112648661 AGGAGGAAACTAGATAAGATCTGACCTAAAGAAAAATTACTTACTCCACCGGAATGACAGATTCG
130 AGAAGGAAACTAGATAAGATCTGA-CTAAAGAAAAACTACTTACTCCACCGGAACGACAGATTCG
* * **
112648726 AAGAACCAATGAAAAATCTAAGCAGTATC-GATGAATTTAGGTAGAATAATTAATCACATGAACA
194 AAGAACCAATGAAAAATCCAAGCAGTA-CAGATGAATTCAGCCAGAATAATTAATCACATGAACA
* * * * *
112648790 AAATATACCATTTTTTAAACACTAATACACACAAACGTTATATCCACACCTTATT-TACGTGAAT
258 AAATATACCATTTTTTAAACACTAATACACAAAAACGTCAGACCCACACCTAATTATAC-T-AAT
* * * * * *
112648854 CTGATCCACTAATGTAATTGCAACTTCTACAACATAGATCTAGATAGCTCTAGATCGGATCTGTA
321 CCGATCCACTAACGTAATTACAACTTCTACAACATAGATCTAGACAGCTCTAAATCAGATCTGTA
* * ** *
112648919 CACAACATGAATGAAACTTGATTAAAACTAGCCTTTAGATGCCCCTATAAGGTTCGACCAGAACA
386 CACAACATGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTCGACCAAAACA
* * * *
112648984 AGGATTAACATTGTCAAATTGGATACAATTTTTAATCACTTACTTTATTTCGATATAGAATGAAG
451 AGGATTAAAATTGTCAAATTAGATACAATTTTTAATCACTTACTTTATCTCGATATACAATGAAG
112649049 AC
516 AC
* * *
112649051 ACGAATGAGTTTCGATGTCACTATTGATTCATGATGTTCGGATTAGGTCCTTCAATCAAAATAAC
1 ACGAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGTCC-TC-AT--AAATAAC
* *
112649116 ACTCAAAAGTTAGTATAGAATATT-TGACTATGCCACAGTAACATTTGGACAAAGTAGAAAATAA
62 ACTCAAAAGTTAGTATAGAATATTCTG-CTATGCCACAGTAACATTTGGCCAAAGTAAAAAATAA
* * * * *
112649180 AGGAAGAAGGAAA-TGAGATAAGATTTGATCGAAAGAAAAACTA-TTAACTCAACCGGAGCAACA
126 AGGAAGAAGGAAACT-AGATAAGATCTGA-CTAAAGAAAAACTACTT-ACTCCACCGGAACGACA
* * *
112649243 AATTTGAAGCACCAATTGAAAAATCCAAGCAGTACAGATGAATTCAGCCAGAATAATTA
188 GATTCGAAGAACCAA-TGAAAAATCCAAGCAGTACAGATGAATTCAGCCAGAATAATTA
112649302 GTAATTCAAC
Statistics
Matches: 652, Mismatches: 96, Indels: 43
0.82 0.12 0.05
Matches are distributed among these distances:
516 60 0.09
517 2 0.00
518 2 0.00
519 6 0.01
520 213 0.33
521 158 0.24
522 5 0.01
523 87 0.13
524 76 0.12
526 1 0.00
529 42 0.06
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (517 bp):
ACGAATGAGTTTAGATGTCACTACTGATCCATGATGTTCGGATTAGGTCCTCATAAATAACACTC
AAAAGTTAGTATAGAATATTCTGCTATGCCACAGTAACATTTGGCCAAAGTAAAAAATAAAGGAA
GAAGGAAACTAGATAAGATCTGACTAAAGAAAAACTACTTACTCCACCGGAACGACAGATTCGAA
GAACCAATGAAAAATCCAAGCAGTACAGATGAATTCAGCCAGAATAATTAATCACATGAACAAAA
TATACCATTTTTTAAACACTAATACACAAAAACGTCAGACCCACACCTAATTATACTAATCCGAT
CCACTAACGTAATTACAACTTCTACAACATAGATCTAGACAGCTCTAAATCAGATCTGTACACAA
CATGAATGAAACTCGATTAAAACCAGCCTTTAGAAACCCCTATAAGGTTCGACCAAAACAAGGAT
TAAAATTGTCAAATTAGATACAATTTTTAATCACTTACTTTATCTCGATATACAATGAAGAC
Found at i:112657939 original size:16 final size:17
Alignment explanation
Indices: 112657918--112657951 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
112657908 AATTAGAGAA
112657918 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
112657934 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
112657951 T
1 T
112657952 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:112662774 original size:46 final size:45
Alignment explanation
Indices: 112662711--112662882 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
112662701 AACTCTTAGT
* *
112662711 CGATGCTTGTCCCAGACATGTCTTACACTAGCTTACT-TCTCGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC--ACTCTCTCAATGC
* *
112662757 CGATGCATGTCCTAGACATTTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCTCAATGC
* *
112662803 CGATGCCATGTCCCAGATATGATCTTACACTGGC-C-CTCAT-AATGTGGC
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGCACTCTC-TCAA--T-GC
*
112662851 CGATACATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
112662883 TCACATAAGT
Statistics
Matches: 107, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
44 3 0.03
45 4 0.04
46 55 0.51
47 28 0.26
48 17 0.16
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCTCAATGC
Found at i:112670909 original size:40 final size:39
Alignment explanation
Indices: 112670853--112670995 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 39
112670843 GCAAAAATTG
* * *
112670853 TAAAACACAAAGCAATAGCGGCGTTTTTGGTAAGATGCCGC
1 TAAAAC-CAGAGCAATAGCGGCG-TTTTGGTAAAACGCCGC
*
112670894 TAAAACCAGAGCAATAGCGGCGTTTTAGTAAAAAGCGCCGC
1 TAAAACCAGAGCAATAGCGGCGTTTTGGT-AAAA-CGCCGC
* * * *
112670935 TAAAAACA-AACATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAACCAGAGCAATAGCGGCG-TTTTGGTAAAACGCCGC
*
112670974 TAAAAACCAGAGCATTAGCGGC
1 T-AAAACCAGAGCAATAGCGGC
112670996 ACTTTTTTAA
Statistics
Matches: 86, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
39 13 0.15
40 38 0.44
41 35 0.41
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (39 bp):
TAAAACCAGAGCAATAGCGGCGTTTTGGTAAAACGCCGC
Found at i:112670934 original size:41 final size:40
Alignment explanation
Indices: 112670853--112671001 Score: 149
Period size: 41 Copynumber: 3.7 Consensus size: 40
112670843 GCAAAAATTG
* * * *
112670853 TAAAACACAAAGCAATAGCGGCGTTTTTGGTAAGATGCCGC
1 TAAAAC-CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
*
112670894 TAAAACCAGAGCAATAGCGGCG-TTTTAGTAAAAAGCGCCGC
1 TAAAACCAGAGCAATAGCGGCGCTTTTGGT-AAAA-CGCCGC
* * * *
112670935 TAAAAACA-AACATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
* *
112670974 TAAAAACCAGAGCATTAGCGGCACTTTT
1 T-AAAACCAGAGCAATAGCGGCGCTTTT
112671002 TTAAACTTAA
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
39 13 0.14
40 38 0.42
41 40 0.44
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (40 bp):
TAAAACCAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:112675496 original size:14 final size:15
Alignment explanation
Indices: 112675477--112675508 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
112675467 ATTATTTTTA
112675477 AATTAAAAA-TATTT
1 AATTAAAAAGTATTT
112675491 AATTAAAAAGTATTT
1 AATTAAAAAGTATTT
112675506 AAT
1 AAT
112675509 ATTAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
AATTAAAAAGTATTT
Found at i:112675918 original size:183 final size:183
Alignment explanation
Indices: 112675610--112675944 Score: 643
Period size: 183 Copynumber: 1.8 Consensus size: 183
112675600 ATTCAGCATT
* *
112675610 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAAT
1 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
112675675 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
66 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
*
112675740 CTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTCTGTATTTC
131 CTCTTATAATCTTACATCTGTCTGTATTAGTGAATTAATGTTGTCTGTATTTC
112675793 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
1 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
112675858 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
66 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
112675923 CTCTTATAATCTTACATCTGTC
131 CTCTTATAATCTTACATCTGTC
112675945 CTAGGTACTA
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 149 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (183 bp):
AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
CTCTTATAATCTTACATCTGTCTGTATTAGTGAATTAATGTTGTCTGTATTTC
Found at i:112676406 original size:9 final size:9
Alignment explanation
Indices: 112676351--112676408 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
112676341 ACCTTCTCTC
*
112676351 ACATAACCT
1 ACATAACTT
*
112676360 ACATAATTT
1 ACATAACTT
*
112676369 ACATAACTC
1 ACATAACTT
*
112676378 ACATAACAT
1 ACATAACTT
112676387 ACATAACAACTT
1 ACAT---AACTT
112676399 ACATAACTT
1 ACATAACTT
112676408 A
1 A
112676409 ACTAATACAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
9 31 0.79
12 8 0.21
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (9 bp):
ACATAACTT
Found at i:112683914 original size:7 final size:7
Alignment explanation
Indices: 112683904--112683934 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
112683894 GATCAGTGAT
112683904 AAGCGAC
1 AAGCGAC
112683911 AAGCGAC
1 AAGCGAC
112683918 AAGCGAC
1 AAGCGAC
112683925 AAGCGAC
1 AAGCGAC
112683932 AAG
1 AAG
112683935 TGATAAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.26, G:0.29, T:0.00
Consensus pattern (7 bp):
AAGCGAC
Found at i:112691753 original size:54 final size:51
Alignment explanation
Indices: 112691685--112691809 Score: 151
Period size: 54 Copynumber: 2.4 Consensus size: 51
112691675 TGGTAGCCTC
*
112691685 AGCTACACTTATCTGATCAGCGATAAGCGACAAGCGACAAGTGATAAGTGCTTT
1 AGCTACACTTATCTGATCAGCGACAAGCGACAAGCGACAAGTGAT-AGT--TTT
** * * * * *
112691739 AGCTACACTTATCTGATCAATGACAAGTGATAAGTGATAAGTGGTAGTTTT
1 AGCTACACTTATCTGATCAGCGACAAGCGACAAGCGACAAGTGATAGTTTT
112691790 AGCTACACTTATCTGATCAG
1 AGCTACACTTATCTGATCAG
112691810 TAACAAGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
51 22 0.35
53 3 0.05
54 37 0.60
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (51 bp):
AGCTACACTTATCTGATCAGCGACAAGCGACAAGCGACAAGTGATAGTTTT
Found at i:112691822 original size:51 final size:51
Alignment explanation
Indices: 112691659--112691819 Score: 187
Period size: 51 Copynumber: 3.1 Consensus size: 51
112691649 ACTTCTGATC
** * * *
112691659 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGCGATA
1 AGTGACAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
* * * * *
112691710 AGCGACAAGCGACAAGTGATAAGTGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGACAAGTGATAAGTGGT-AGT--TTTAGCTACACTTATCTGATCAGTGACA
* *
112691764 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTAACA
1 AGTGACAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
112691815 AGTGA
1 AGTGA
112691820 TAAATGTGAT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
51 47 0.52
52 2 0.02
53 3 0.03
54 38 0.42
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
Found at i:112692745 original size:15 final size:16
Alignment explanation
Indices: 112692701--112692747 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 16
112692691 GGGGTGTTAC
112692701 AAATAATAAATATTTATT
1 AAATAATAAATA--TATT
*
112692719 ACAATTATAAATATATT
1 A-AATAATAAATATATT
112692736 -AATAATAAATAT
1 AAATAATAAATAT
112692748 TTTGTAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 11 0.42
17 4 0.15
18 1 0.04
19 10 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATAATAAATATATT
Found at i:112694837 original size:29 final size:31
Alignment explanation
Indices: 112694783--112694841 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
112694773 TTTTTTTTAA
*
112694783 ATCTTAACAATAATTATAAGAAATTAAAATC
1 ATCTTAACAATAAATATAAGAAATTAAAATC
112694814 ATCTTAA-AA-AAATATAA-AATATTAAAAT
1 ATCTTAACAATAAATATAAGAA-ATTAAAAT
112694842 ATTATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 2 0.08
29 15 0.58
30 2 0.08
31 7 0.27
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (31 bp):
ATCTTAACAATAAATATAAGAAATTAAAATC
Found at i:112694839 original size:8 final size:8
Alignment explanation
Indices: 112694822--112694900 Score: 57
Period size: 9 Copynumber: 10.5 Consensus size: 8
112694812 TCATCTTAAA
112694822 AAAATA-T
1 AAAATATT
112694829 AAAATATT
1 AAAATATT
112694837 AAAATATT
1 AAAATATT
112694845 ---ATATT
1 AAAATATT
112694850 AAAAT-TT
1 AAAATATT
*
112694857 AAAAAATT
1 AAAATATT
112694865 CAAAA-A-T
1 -AAAATATT
*
112694872 AAAA-ATA
1 AAAATATT
112694879 AAAATTATT
1 AAAA-TATT
112694888 AAAATTATT
1 AAAA-TATT
112694897 AAAA
1 AAAA
112694901 ATTTATATAA
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
5 5 0.08
6 5 0.08
7 17 0.28
8 14 0.23
9 19 0.32
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:112694901 original size:10 final size:10
Alignment explanation
Indices: 112694877--112694914 Score: 51
Period size: 9 Copynumber: 3.7 Consensus size: 10
112694867 AAAATAAAAA
112694877 TAAAAATTAT
1 TAAAAATTAT
112694887 T-AAAATTAT
1 TAAAAATTAT
112694896 TAAAAATTTAT
1 TAAAAA-TTAT
112694907 ATAAAAAT
1 -TAAAAAT
112694915 AATTTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.36
10 5 0.20
11 5 0.20
12 6 0.24
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:112696176 original size:40 final size:40
Alignment explanation
Indices: 112696117--112696193 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
112696107 ATAAACTTTT
*
112696117 AATCTTATCGACAATTACCTACAAGAAGAAATATTATAAA
1 AATCTTATCGACAACTACCTACAAGAAGAAATATTATAAA
*
112696157 AATCTTTTCGACAACTACCTACAAGAAGAAATATTAT
1 AATCTTATCGACAACTACCTACAAGAAGAAATATTAT
112696194 GAATTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.29
Consensus pattern (40 bp):
AATCTTATCGACAACTACCTACAAGAAGAAATATTATAAA
Found at i:112697107 original size:22 final size:22
Alignment explanation
Indices: 112697077--112697140 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 22
112697067 TATATGCATG
*
112697077 TAAAAATATTAAATTTAAAATA
1 TAAATATATTAAATTTAAAATA
112697099 TAAATATA-T---TTTAAAATA
1 TAAATATATTAAATTTAAAATA
* *
112697117 -ACATATATTAAATAATAAAATA
1 TAAATATATTAAAT-TTAAAATA
112697139 TA
1 TA
112697141 TATTTAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 11
0.70 0.06 0.23
Matches are distributed among these distances:
17 6 0.18
18 10 0.30
21 2 0.06
22 14 0.42
23 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATATATTAAATTTAAAATA
Found at i:112697122 original size:17 final size:17
Alignment explanation
Indices: 112697090--112697150 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
112697080 AAATATTAAA
112697090 TTTAAAATATAAATATAT
1 TTTAAAATA-AAATATAT
*
112697108 TTTAAAATAACATATA-
1 TTTAAAATAAAATATAT
*
112697124 TTAAATAATAAAATATAT
1 TTTAA-AATAAAATATAT
112697142 ATTTAAAAT
1 -TTTAAAAT
112697151 TAATTAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 4 0.11
17 16 0.44
18 12 0.33
19 4 0.11
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTAAAATAAAATATAT
Found at i:112703308 original size:16 final size:16
Alignment explanation
Indices: 112703287--112703319 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
112703277 TAATTTTTTC
112703287 TGTCTCTATTTTATGA
1 TGTCTCTATTTTATGA
112703303 TGTCTCTATTTTATGA
1 TGTCTCTATTTTATGA
112703319 T
1 T
112703320 CTATGTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (16 bp):
TGTCTCTATTTTATGA
Found at i:112710687 original size:4 final size:4
Alignment explanation
Indices: 112710678--112710750 Score: 146
Period size: 4 Copynumber: 18.2 Consensus size: 4
112710668 TTGTTTTCTC
112710678 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
112710726 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
112710751 TACATAACAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 69 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:112711890 original size:130 final size:130
Alignment explanation
Indices: 112711730--112711999 Score: 425
Period size: 130 Copynumber: 2.1 Consensus size: 130
112711720 TAATTTCAAT
** * *
112711730 TATTTCTTTAATGATTAAGATATGTTATAAGTTTTTGTATTTTTTTATAAATTTGAAATTTAGT-
1 TATTT-TTTAATGATTAAGATATGCCATAAGTTTTTGTATTTTTTCATAAATTTGAAATTTAATA
* * * *
112711794 CATTTTGTTTTTCAGATTTTAAAATTCAGATCTAATTATTTATTAAATTTAAGTTCATTACAACG
65 C-CTTTATTTTTCAGATTTTAAAATTCAGATCTAAGTATTTATTAAATTTAAGTTCATTACAACA
112711859 TC
129 TC
112711861 TATTTTTTAATGATTAAGATATGCCATAAGTTTTTGTATTTTTTCATAAATTTGAAATTTAATAC
1 TATTTTTTAATGATTAAGATATGCCATAAGTTTTTGTATTTTTTCATAAATTTGAAATTTAATAC
* *
112711926 CTTTATTTTTCAGATTTTAAAATTTAGATCTAAGTATTTGTTAAATTTAAGTTCATTACAACATC
66 CTTTATTTTTCAGATTTTAAAATTCAGATCTAAGTATTTATTAAATTTAAGTTCATTACAACATC
112711991 TATTTTTTA
1 TATTTTTTA
112712000 GTTTCATGGA
Statistics
Matches: 128, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
130 122 0.95
131 6 0.05
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (130 bp):
TATTTTTTAATGATTAAGATATGCCATAAGTTTTTGTATTTTTTCATAAATTTGAAATTTAATAC
CTTTATTTTTCAGATTTTAAAATTCAGATCTAAGTATTTATTAAATTTAAGTTCATTACAACATC
Found at i:112713666 original size:23 final size:23
Alignment explanation
Indices: 112713625--112713677 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
112713615 AATTTAAGGA
*
112713625 ATAAA-TAATTTTAAAAAACAAG
1 ATAAATTAATTTTAAAAAACAAC
* **
112713647 ATTAATTAATTTTATCAAACAAC
1 ATAAATTAATTTTAAAAAACAAC
112713670 ATAAATTA
1 ATAAATTA
112713678 CATTGAGTAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (23 bp):
ATAAATTAATTTTAAAAAACAAC
Found at i:112718622 original size:17 final size:18
Alignment explanation
Indices: 112718585--112718623 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
112718575 AAGTCCCAAA
* *
112718585 TTAAATTTTAAATTGATT
1 TTAAACTTTAAAATGATT
112718603 TTAAACTTTAAAAT-ATT
1 TTAAACTTTAAAATGATT
112718620 TTAA
1 TTAA
112718624 TTAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAAACTTTAAAATGATT
Found at i:112721642 original size:7 final size:7
Alignment explanation
Indices: 112721605--112721629 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
112721595 AGCATATGGT
112721605 TCATCAA
1 TCATCAA
112721612 TCATCAA
1 TCATCAA
112721619 TCATCAA
1 TCATCAA
112721626 TCAT
1 TCAT
112721630 GGTCATTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCAA
Found at i:112740134 original size:454 final size:452
Alignment explanation
Indices: 112739126--112744356 Score: 6444
Period size: 454 Copynumber: 11.6 Consensus size: 452
112739116 TAGAATGTAC
*
112739126 AAGTTTTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG-
*
112739191 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTATTAGAATTTTTTGACAAACAGAAGA
65 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAAGA
* * * * * *
112739256 GTGATTGGAAACGTAGCCGTTCATAGAGGAATAGGGCTAGCTGGTTTAGTGATATTAGGAAGGAT
130 GTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGAT
* * * ** * *
112739321 TTTGTAGAGATATTTCAAGATACTGCCCATATTTGGGCTAAAAAAATGGGTAAAAATAGCTGTCA
195 TTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTCA
* * * * * *
112739386 AAGCATTTATAC-AAAATACCTAATTAAATATTTGTTTATTAC-AAGAAAGGTTCCAAATGTCGA
260 AAGCATTTATACGAAAA-ACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* * * *
112739449 GTAAAAGTTTTACCAAACTTAAATGGACCGAAGAGAAAGAGGAATGATGATATTGAAGAGCCTAA
324 GTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGA-AAATGATGATATTGAAGAGCTTAA
* * * *
112739514 AAAATTGATGGGCGTCATCATAAATTACCAGTTCAGATCAAATAAGCCAGATTATGATCGTTTCA
388 AAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTCA
* * * * * *
112739579 AAATTCTTAGTTAAGTGTGACAATGATGATGACTTATTCAGGTGTAATCAAATCTTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
*
112739644 AAAGAAATGGTTGCTT-C-TATTAGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAA
66 AAA-AAATGGCTGCTTGCGT-TT-GAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAA
*
112739707 GAGTGATTGGGAATGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGG
128 GAGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGG
* * * *
112739772 ATTTTGTAGAGATAATTCAAGATACTGCCCGTATTTGAGCTAGAAAAGCGGGTAGAAGTAGTTGT
193 ATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGT
112739837 CAAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
258 CAAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
*
112739902 GGTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGATAAATGATGATATTAAAGAGCTTA
323 GGTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGA-AAATGATGATATTGAAGAGCTTA
* * * * *
112739967 AAAAATTGATGAACAG-CATCATAAATTACCAGTTCGGATCAGATAAGTCAGATTATAATCGATT
387 AAAAATTGATGGAC-GTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTT
112740031 CA
451 CA
* *
112740033 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCATGTGT-ATTCAAATTGTATGTCATG
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCA-TCAAATCGTATGTCATG
** * * *
112740097 AAACAAAATGGCTGCTTATGTTTGAAGATTTTTTAAATGTAATGGAATTTTTTGACAAACATAAG
65 AAA-AAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAAG
* * * * * * * *
112740162 AGTGATTAGGAATGTAGGCGTTCATAGAGGAATAAGGTTAGCTGGTTTAGTTATATTAGGAAGAA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGA
* * * * *
112740227 TTTTGTAGAGATATTTCAAGATACTACCCATATTTAGGCTAGAAAAGCGGGTAGAAATAGCTGTC
194 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTC
* * *
112740292 AAAGCATTTATACGGAAAATCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGCCGG
259 AAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* *
112740357 GTAAAAGTTTTACCAAACTTAGATA-ACCGAAGAGAAAAGAGAATGATGATATTGAAGAGCTTTA
324 GTAAAAGTTTTACCAAACTTAGATAGACCGAAGAG-AAAGAAAATGATGATATTGAAGAGCTTAA
*
112740421 AAAATTGATGGACGTCATCATAAATTACCCGTTCGTATCAGATAAGCCAGATTATGATCGTTTCA
388 AAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTCA
* * *
112740486 AAGTTCTTAGTTAAGCATGCCAATGATGACGACTTACTCAGGTGTCTTCAAATCGTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
* * * * *
112740551 AAAGAAATGGTTGTTTGCGTTTGAAGATTATTTAAATGTAATTA-AATTTTTTGACAAACAAAAA
66 AAA-AAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAA-TAGAATTTTTTGACAAACAGAAG
* * * **
112740615 AGTGATTGAGAATGTAGGCGTTCATAGAGGAGTAGGGCTAGCTGGTTTAGTTATATT-GGAAAAG
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGG-AGGG
* * * * *
112740679 ATTTTGTAGAGATATTTCAAGATGCTGTCCATATTTAGGCTAGAAAAGCGAGTAGAAATAGCTGT
193 ATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGT
*
112740744 CAAAGCATTTATACAAAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTC
258 CAAAGCATTTATAC-GAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTC
* * * *
112740809 GGGTAAAATTTTTACCAAACTTAGATGGACCGAAGAGAAAGATGAATGATGATATTGAAGAGCTC
322 GGGTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGA-AAATGATGATATTGAAGAGCTT
* *
112740874 AAAAAATTGATAGACGTCATCATAAATTACCTGTTCGGATCAGATAAGCCAGATTATGATCGTTT
386 AAAAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTT
112740939 CA
451 CA
* * ** * **
112740941 AAGTTTTTGGTTAAGTATGCCAATGATGATGACTTACTCATTTGTCTTCAAATTATATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
* * *
112741006 AACGAAATGACTGCTTGCGTTTGAAGATTGTTTAAATGTAAT-GAAATTTTTTGACAAACAGAAT
66 AA-AAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAG-AATTTTTTGACAAACAGAAG
* * * * * * *
112741070 AGTGATTGGGAACGTAGGCTTTCACAAAGGAATAGAGCTAGCTAGTTTAGTTATACTAGAAGGGA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGA
* * *
112741135 TTTTGTAGTA-ATATTTCAATATGCTGCCCGTAATTGGGCTAGTAAAGCGGGTAGAAGTAGCTGT
194 TTTTGTAG-AGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGT
* * * ** * *
112741199 CAAAGCATTTATA-TAGAAACCCAATTAAATGTTTATTTATTATAAGGAATGGTTTCGAATGTCG
258 CAAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
* * * *
112741263 GGTAAAAAGGTTTACCTAACTTAGATAGACCGAAGAGAAAGAAAATAATGATATTAAAGAGCTTA
323 GGT-AAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGAAAATGATGATATTGAAGAGCTTA
* *
112741328 AAAAATTGATGGACGTCATCATAAATTACTCGTTCGGATCAAATAAGCCAGATTATGATCGTTTC
387 AAAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTC
112741393 A
452 A
* *
112741394 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAAGTGTCATCAAATCGTATGCCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG-
* * * *
112741459 AAAAAAATGGCTACTTGCGTTTGAAAATTGTTTAAATGTAATGGAATTTTTTGACAAATAGAAGA
65 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAAGA
* * * * *
112741524 GTAATTGGGAACGTAGGTGTTCATAAAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGAGAT
130 GTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGAT
* * * * * *
112741589 TTTATAGAGATATTTTAAGGTGCTGCCCGTATTTGGGATAGAAAAGCGAGTAGAAGTAGTTGT-A
195 TTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTCA
* * * * * *
112741653 CAAGTATTTATACGGAAAACCTAATTAAATGTTTGTTTATTACAAAGAAGGGTTCCGAATGTTGG
260 -AAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* * *
112741718 GTAAAATTTTTACCAAACTTAGATAGACCAAAGAGCAAGAGAAATGATGATATTGAAGAGCTTAA
324 GTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGA-AAATGATGATATTGAAGAGCTTAA
* * * * * ** *
112741783 AAAATTGATGTA-GATCATCATAAATTACACATTCAGATCAGATAAGCCAAAGAATGATGGTTTC
388 AAAATTGATGGACG-TCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTC
*
112741847 G
452 A
** *
112741848 AAGTTCTTAGTTAAGTATAACAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
* * *
112741913 AAAAGAATAGCTGATTGCGTTTGAAAATTGTTTAAATGTAAT-GAAATTTTTTGACAAACAGAAG
66 AAAA-AATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAG-AATTTTTTGACAAACAGAAG
* * * * * * ** *
112741977 AGTGAGTGGGAACGTAGGTGTTCATAGACGAATAAGGCTAGCTGGTAGAGTTATATTAGGAGTGA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGA
* * * * *
112742042 TTTTGTAGTGATATTTCAAGATGTTACCCGTATTTGGGCTAGAAAAGCAGGTAGAAGTAGCTGTG
194 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTC
* * * * *
112742107 AAAGCATTTATATGCAACACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTTCGAATATCGG
259 AAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* ** * * *
112742172 GTAAAAGTTTTATCTCACTTAGATGGACCGAAGAGCAAGAAGAATGATAATATTGAA-ATGCTTA
324 GTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGAA-AATGATGATATTGAAGA-GCTTA
* * * *
112742236 AAAAATTGATTGACGTCATCATAAATTACCCGTTCAGATTAGATAAGCAAGATTATGATCGTTTC
387 AAAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTC
112742301 A
452 A
*
112742302 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCATGTGTCATCAAATCGTATGTCATGT
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG-
* * * * *
112742367 AAAGAAATGGTTGCTTACATTTGAAGATTATTTAAATGTAAT-GAAATTTTTTGACAAACAGAAG
65 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAG-AATTTTTTGACAAACAGAAG
* * * * * * * * * * *
112742431 AGTAATTGGGAAGGTAGACGTTCACAGAGGAATAAGACTAACT-GTTTTGTTATAGTAAGATGGA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGA
* * *
112742495 TTTTATAGAGATATTTCAAAATGCTGCCCGTATTTGGGCTAGAAAAGCGGATAGAAGTAGCTGTC
194 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTC
* * * ***
112742560 AAAGCATTTATACGGAAAACCCAATTAAATGTTTATTTATTACGAGGAAGGGTTTCGAATGTTAA
259 AAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* * *
112742625 GTAAAAGTTTTACCTAACTTAGAT-GTACCAAAGAGCAAGAAGAATGATGATATTGAAGAGCTTA
324 GTAAAAGTTTTACCAAACTTAGATAG-ACCGAAGAGAAAGAA-AATGATGATATTGAAGAGCTTA
** *
112742689 AAAAATTGATAAACGTCATCATAAATTACCCGTTCGGATCAGATAAGCAAGATTATGATCGTTTC
387 AAAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTC
112742754 A
452 A
* * * *
112742755 AAGTTCTTACTTAGGTATGCTAATGATGATAACTTA--C-----T--T---AT-G--TGTCATGT
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG-
* ** * * * *
112742805 AAAGAAATGGCTGCTTGTATTTGAAGACTATTTAAATGTAATAAAATTTTTTGACAAACAGAAAA
65 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAAGA
* * * * * * * ** *
112742870 GTAATTGGGAACGTAAGCATTCACAGAGGAGTAAGCCTAGCTGGTTTTGTTATAGTAAAATGGAT
130 GTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGAT
* * * * * * * *
112742935 TTTGTAGAGATATTTTAATATGCTGGCCGTATTTAGGCTAGGAAAGCGGATAAAAGTAGCTATCA
195 TTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTCA
** * * *
112743000 AAGTTTTTATAC-AGAAAACCCAATTAAATGTTTGTTTATTACGAGAAAGGGTTTCGAATGTCGA
260 AAGCATTTATACGA-AAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* * * * * * *
112743064 GTAAAAATTTTATCTAACTTAGATGGACCGAAGAGCAAGAAGAATGATAATATTGAAGAGCTAAA
324 GTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGAA-AATGATGATATTGAAGAGCTTAA
* * * *
112743129 AAAATTGATGGACGTCATCATAAATTACCCGTTCGAATCAGATAAGCAAGATTATTATTGTTTCA
388 AAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTCA
* * **
112743194 AAGTTCTTACTGAAGTATGCCAATGATGATGACTTACTCATTTGTCATCAAATCGTATGTCATGT
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG-
* * * * * * *
112743259 AAAAAAATGGTTGTTTGCATTTGAAGACTATTTAAATATAAT-GAAATTTTTTAACAAACAGAAG
65 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAG-AATTTTTTGACAAACAGAAG
* * * * * *
112743323 AGTAATTAGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTTGTTATAATAAGATGGA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGA
* *
112743388 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCAGATAGAAGTAGCTGTC
194 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTC
* * * * * **
112743453 AAAGCATTTAAACGAAAAACTCAATTAAATGTTTGTTTATTACGAGCAAGGGTTTCGAATTTCAA
259 AAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
*
112743518 GTAAAATTTTTACCAAACTTTA-ATAGACCGAAGAGCAAA-AGAAATGATGATATTGAAGAGCTT
324 GTAAAAGTTTTACCAAAC-TTAGATAGACCGAAGAG-AAAGA-AAATGATGATATTGAAGAGCTT
* * * * * *
112743581 AAAAAATTGATAGAAGTTATCATAAGTTATCCGTTCGGATCAGATAAGCCAAATTATGATCGTTT
386 AAAAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTT
112743646 CA
451 CA
* * * * *
112743648 AAGTTCTTAATTAAGTATGCCAATGATGATAATTTACTTAGATGTCATCAAA-CTGTATGTCATG
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATC-GTATGTCATG
* * * * * *
112743712 AAAAGAAATAGCTGCTTGCGTTTGAAAATTATTTATATGTAATAGAATTTTTTGACAAATAGAAA
65 AAAA-AAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAAG
** * * * * *
112743777 AGTGATTTAGAAC-TCAGGCGTTTACAGAGGAGCAGGGCTAGGTGGTTTAGTTATATTAGAAGAG
129 AGTGATTGGGAACGT-AGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGG
* * * *
112743841 ATTTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAAAAAAGCTGGTAAAAGTAGCTGT
193 ATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGT
* * *
112743906 TAATGCATTTATAC-AGAAAACCTAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTC
258 CAAAGCATTTATACGA-AAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTC
* * * * * *
112743970 GGGTAAAAGTTTTATCAAACTTAGATGGACCGAATAGAAA-AAAATTATAATATTGAAGAGCTTT
322 GGGTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGAAAATGATGATATTGAAGAGCTTA
* * ** *
112744034 AAAAATTGACGGACGTCATCATAAATTATCCGTTCATATCAGATAAGCCAGATTATAATCGTTTC
387 AAAAATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTC
112744099 A
452 A
* * * *
112744100 AAGTTCTTAGTTAAGTATGCCAATTATGATGACTTATTCAGGTGTCTTCAAATCGTAGGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
* * * * *
112744165 AAAGAAATTGTTACTTGCATTTGAAGATTGTTTAAATGTAATTA-ATTTTTTTGACAAACAGAAG
66 AAA-AAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAA-TAGAATTTTTTGACAAACAGAAG
* * * * * *
112744229 AGTGATTGGGAACATAAGCGTTCAAAGAGAAGTGGGAGCTAGCTAGTTTAGTTATATTAGGAGGG
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAGTAGG-GCTAGCTGGTTTAGTTATATTAGGAGGG
* * * *
112744294 ATTTTGTAGAGATATTTCAAGATGCTGCTCGTATTTGGGCTAGAAAAGCAGATAGAAATAGCT
193 ATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCT
112744357 CCTTGTATAA
Statistics
Matches: 4170, Mismatches: 533, Indels: 150
0.86 0.11 0.03
Matches are distributed among these distances:
438 101 0.02
439 284 0.07
440 2 0.00
441 3 0.00
444 1 0.00
446 2 0.00
448 1 0.00
451 4 0.00
452 223 0.05
453 1360 0.33
454 1847 0.44
455 339 0.08
456 3 0.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (452 bp):
AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
AAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATAGAATTTTTTGACAAACAGAAGAG
TGATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGGATT
TTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGGGTAGAAGTAGCTGTCAA
AGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGGGT
AAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGAAAATGATGATATTGAAGAGCTTAAAAA
ATTGATGGACGTCATCATAAATTACCCGTTCGGATCAGATAAGCCAGATTATGATCGTTTCA
Found at i:112742058 original size:907 final size:904
Alignment explanation
Indices: 112739126--112744356 Score: 6626
Period size: 907 Copynumber: 5.8 Consensus size: 904
112739116 TAGAATGTAC
* *
112739126 AAGTTTTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATG-
* * *
112739191 AAAAAAATGGCTGCTTGCGTTTGAAGATTGTTTAAATGT-ATTAGAATTTTTTGACAAACAGAAG
65 AAAAGAATAGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATGA-AATTTTTTGACAAACAGAAG
* * * * *
112739255 AGTGATTGGAAACGTAGCCGTTCATAGAGGAATAGGGCTAGCTGGTTTAGTGATATTAGGAAGGA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAATAAGGCTAGCTGGTTTAGTTATATTA-GAAGGA
* * ** *
112739320 TTTTGTAGAGATATTTCAAGATACTGCCCATATTTGGGCTAAAAAAATGGGTAAAAATAGCTGTC
193 TTTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTAAAAGTAGCTGTC
* * * * *
112739385 AAAGCATTTATACA-AAATACCTAATTAAATATTTGTTTATTAC-AAGAAAGGTTCCAAATGTCG
258 AAAGCATTTATACAGAAA-ACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
* * * * *
112739448 AGTAAAAGTTTTACCAAACTTAAATGGACCGAAGAGAAAGAGGAATGATGATATTGAAGAGCCTA
322 GGTAAAAGTTTTACCAAACTTAGATGGACCGAAGAGAAAGA-AAATGATAATATTGAAGAGCTTA
* * *
112739513 AAAAATTGATGGGCGTCATCATAAATTACCAGTTCAGATCAAATAAGCCAGATTATGATCGTTTC
386 AAAAATTGATGGACGTCATCATAAATTACCCGTTCAGATCAGATAAGCCAGATTATGATCGTTTC
* * * * * *
112739578 AAAATTCTTAGTTAAGTGTGACAATGATGATGACTTATTCAGGTGTAATCAAATCTTATGTCATG
451 AAAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG
* *
112739643 AAAAGAAATGGTTGCTT-CTATTAGAAGATTGTTTAAATGTAAT-AGAATTTTTTGACAAACAGA
516 AAAAGAAATGGTTGCTTGC-ATTTGAAGATTATTTAAATGTAATGA-AATTTTTTGACAAACAGA
* *
112739706 AGAGTGATTGGGAATGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGG
579 AGAGTAATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGA-G
* * * * *
112739771 GATTTTGTAGAGATAATTCAAGATACTGCCCGTATTTGAGCTAGAAAAGCG-GGTAGAAGTAGTT
643 GATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCT
*
112739835 GTCAAAGCATTTATACGAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGT
708 GTCAAAGCATTTATACGGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGT
* * * * *
112739900 CGGGTAAAAGTTTTACCAAACTTAGATAGACCGAAGAGAAAGATAAATGATGATATTAAAGAGCT
773 TGGGTAAAATTTTTACCAAACTTAGATAGACCGAAGAGCAAGAGAAATGATGATATTGAAGAGCT
* * * * * *
112739965 TAAAAAATTGATGAACAGCATCATAAATTACCAGTTCGGATCAGATAAGTCAGATTATAATCGAT
838 TAAAAAATTGATGAAGATCATCATAAATTACC-GTTCGGATCAGATAAGCCAAATTATGATCGTT
112740030 TCA
902 TCA
*
112740033 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCATGTGT-ATTCAAATTGTATGTCATG
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCA-TCAAATTGTATGTCATG
* * ** * * *
112740097 AAACAAAATGGCTGCTTATGTTTGAAGATTTTTTAAATGTAATGGAATTTTTTGACAAACATAAG
65 AAA-AGAATAGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAG
* * * * *
112740162 AGTGATTAGGAATGTAGGCGTTCATAGAGGAATAAGGTTAGCTGGTTTAGTTATATTAGGAAGAA
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAATAAGGCTAGCTGGTTTAGTTATATTA-GAAGGA
* * *
112740227 TTTTGTAGAGATATTTCAAGATACTACCCATATTTAGGCTAGAAAAGCGGGTAGAAA-TAGCTGT
193 TTTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTA-AAAGTAGCTGT
* * *
112740291 CAAAGCATTTATACGGAAAATCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGCCG
257 CAAAGCATTTATACAGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
* * * *
112740356 GGTAAAAGTTTTACCAAACTTAGAT-AACCGAAGAGAAAAGAGAATGATGATATTGAAGAGCTTT
322 GGTAAAAGTTTTACCAAACTTAGATGGACCGAAGAG-AAAGAAAATGATAATATTGAAGAGCTTA
112740420 AAAAATTGATGGACGTCATCATAAATTACCCGTTC-GTATCAGATAAGCCAGATTATGATCGTTT
386 AAAAATTGATGGACGTCATCATAAATTACCCGTTCAG-ATCAGATAAGCCAGATTATGATCGTTT
* * *
112740484 CAAAGTTCTTAGTTAAGCATGCCAATGATGACGACTTACTCAGGTGTCTTCAAATCGTATGTCAT
450 CAAAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCAT
* * * *
112740549 GAAAAGAAATGGTTGTTTGCGTTTGAAGATTATTTAAATGTAATTAAATTTTTTGACAAACAAAA
515 GAAAAGAAATGGTTGCTTGCATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAA
* * * * * *
112740614 AAGTGATTGAGAATGTAGGCGTTCATAGAGGAGTAGGGCTAGCTGGTTTAGTTATATT-GGAAAA
580 GAGTAATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGG--AG
* * * *
112740678 GATTTTGTAGAGATATTTCAAGATGCTGTCCATATTTAGGCTAGAAAAGCGAG-TAGAAATAGCT
643 GATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCT
**
112740742 GTCAAAGCATTTATACAAAAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATG
708 GTCAAAGCATTTATAC-GGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATG
* * *
112740807 TCGGGTAAAATTTTTACCAAACTTAGATGGACCGAAGAGAAAGATG-AATGATGATATTGAAGAG
772 TTGGGTAAAATTTTTACCAAACTTAGATAGACCGAAGAGCAAGA-GAAATGATGATATTGAAGAG
* * *
112740871 CTCAAAAAATTGATAGACG-TCATCATAAATTACCTGTTCGGATCAGATAAGCCAGATTATGATC
836 CTTAAAAAATTGAT-GAAGATCATCATAAATTACC-GTTCGGATCAGATAAGCCAAATTATGATC
112740935 GTTTCA
899 GTTTCA
* * ** * *
112740941 AAGTTTTTGGTTAAGTATGCCAATGATGATGACTTACTCATTTGTCTTCAAATTATATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATGA
* *
112741006 AACGAA-ATGACTGCTTGCGTTTGAAGATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAT
66 AAAGAATA-G-CTGCTTGCGTTTGAAGATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAG
* * * *
112741070 AGTGATTGGGAACGTAGGCTTTCACAAAGGAAT-AGAGCTAGCTAGTTTAGTTATACTAGAAGGG
129 AGTGATTGGGAACGTAGGCGTTCACAGAGGAATAAG-GCTAGCTGGTTTAGTTATATTAGAA-GG
* * * * *
112741134 ATTTTGTAGTA-ATATTTCAATATGCTGCCCGTAATTGGGCTAGTAAAGCGGGTAGAAGTAGCTG
192 ATTTTGTAG-AGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTAAAAGTAGCTG
* * ** * *
112741198 TCAAAGCATTTATATAG-AAACCCAATTAAATGTTTATTTATTATAAGGAATGGTTTCGAATGTC
256 TCAAAGCATTTATACAGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTC
* * * * * *
112741262 GGGTAAAAAGGTTTACCTAACTTAGATAGACCGAAGAGAAAGAAAATAATGATATTAAAGAGCTT
321 GGGT-AAAAGTTTTACCAAACTTAGATGGACCGAAGAGAAAGAAAATGATAATATTGAAGAGCTT
* * *
112741327 AAAAAATTGATGGACGTCATCATAAATTACTCGTTCGGATCAAATAAGCCAGATTATGATCGTTT
385 AAAAAATTGATGGACGTCATCATAAATTACCCGTTCAGATCAGATAAGCCAGATTATGATCGTTT
* *
112741392 CAAAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAAGTGTCATCAAATCGTATGCCAT
450 CAAAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCAT
* * * * * * * *
112741457 GAAAAAAAATGGCTACTTGCGTTTGAAAATTGTTTAAATGTAATGGAATTTTTTGACAAATAGAA
515 GAAAAGAAATGGTTGCTTGCATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAA
* * *
112741522 GAGTAATTGGGAACGTAGGTGTTCATAAAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGAG
580 GAGTAATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAG-G
* * * * *
112741587 ATTTTATAGAGATATTTTAAGGTGCTGCCCGTATTTGGGATAGAAAAGCGAG-TAGAAGTAGTTG
644 ATTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCTG
* * * *
112741651 T-ACAAGTATTTATACGGAAAACCTAATTAAATGTTTGTTTATTACAAAGAAGGGTTCCGAATGT
709 TCA-AAGCATTTATACGGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGT
*
112741715 TGGGTAAAATTTTTACCAAACTTAGATAGACCAAAGAGCAAGAGAAATGATGATATTGAAGAGCT
773 TGGGTAAAATTTTTACCAAACTTAGATAGACCGAAGAGCAAGAGAAATGATGATATTGAAGAGCT
* * * ** *
112741780 TAAAAAATTGATGTAGATCATCATAAATTACACATTCAGATCAGATAAGCCAAAGAATGATGGTT
838 TAAAAAATTGATGAAGATCATCATAAATTAC-CGTTCGGATCAGATAAGCCAAATTATGATCGTT
*
112741845 TCG
902 TCA
**
112741848 AAGTTCTTAGTTAAGTATAACAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATG-
* *
112741913 AAAAGAATAGCTGATTGCGTTTGAAAATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAGA
65 AAAAGAATAGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAGA
* * * * ** *
112741978 GTGAGTGGGAACGTAGGTGTTCATAGACGAATAAGGCTAGCTGGTAGAGTTATATTAGGAGTGAT
130 GTGATTGGGAACGTAGGCGTTCACAGAGGAATAAGGCTAGCTGGTTTAGTTATATTAGAAG-GAT
* * * * * * *
112742043 TTTGTAGTGATATTTCAAGATGTTACCCGTATTTGGGCTAGAAAAGCAGGTAGAAGTAGCTGTGA
194 TTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTAAAAGTAGCTGTCA
* * * *
112742108 AAGCATTTATA-TGCAACACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTTCGAATATCGG
259 AAGCATTTATACAG-AAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGG
* ** *
112742172 GTAAAAGTTTTATCTCACTTAGATGGACCGAAGAGCAAGAAGAATGATAATATTGAA-ATGCTTA
323 GTAAAAGTTTTACCAAACTTAGATGGACCGAAGAGAAAGAA-AATGATAATATTGAAGA-GCTTA
* * *
112742236 AAAAATTGATTGACGTCATCATAAATTACCCGTTCAGATTAGATAAGCAAGATTATGATCGTTTC
386 AAAAATTGATGGACGTCATCATAAATTACCCGTTCAGATCAGATAAGCCAGATTATGATCGTTTC
*
112742301 AAAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCATGTGTCATCAAATCGTATGTCATG
451 AAAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG
* *
112742366 TAAAGAAATGGTTGCTTACATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAAG
516 AAAAGAAATGGTTGCTTGCATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAAG
* * * * * * * * *
112742431 AGTAATTGGGAAGGTAGACGTTCACAGAGGAATAAGACTAACT-GTTTTGTTATAGTAAGATGGA
581 AGTAATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGA-GGA
* *
112742495 TTTTATAGAGATATTTCAAAATGCTGCCCGTATTTGGGCTAGAAAAGCG-GATAGAAGTAGCTGT
645 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCTGT
* * *
112742559 CAAAGCATTTATACGGAAAACCCAATTAAATGTTTATTTATTACGAGGAAGGGTTTCGAATGTTA
710 CAAAGCATTTATACGGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTTG
* * * *
112742624 AGTAAAAGTTTTACCTAACTTAGAT-GTACCAAAGAGCAAGA-AGAATGATGATATTGAAGAGCT
775 GGTAAAATTTTTACCAAACTTAGATAG-ACCGAAGAGCAAGAGA-AATGATGATATTGAAGAGCT
*
112742687 TAAAAAATTGATAAACG-TCATCATAAATTACCCGTTCGGATCAGATAAG-CAAGATTATGATCG
838 TAAAAAATTGATGAA-GATCATCATAAATTA-CCGTTCGGATCAGATAAGCCAA-ATTATGATCG
112742750 TTTCA
900 TTTCA
* * * * *
112742755 AAGTTCTTACTTAGGTATGCTAATGATGATAACTTA--C-----T--T---A-TG--TGTCATGT
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATGA
* ** * * * *
112742805 AAAGAAATGGCTGCTTGTATTTGAAGACTATTTAAATGTAATAAAATTTTTTGACAAACAGAAAA
66 AAAG-AATAGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAGA
* * * * * * * *
112742870 GTAATTGGGAACGTAAGCATTCACAGAGGAGTAAGCCTAGCTGGTTTTGTTATAGTAAAATGGAT
130 GTGATTGGGAACGTAGGCGTTCACAGAGGAATAAGGCTAGCTGGTTTAGTTATATTAGAA-GGAT
* * * * * * * *
112742935 TTTGTAGAGATATTTTAATATGCTGGCCGTATTTAGGCTAGGAAAGCGGATAAAAGTAGCTATCA
194 TTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTAAAAGTAGCTGTCA
** * * *
112743000 AAGTTTTTATACAGAAAACCCAATTAAATGTTTGTTTATTACGAGAAAGGGTTTCGAATGTCGAG
259 AAGCATTTATACAGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGGG
* * * * *
112743065 TAAAAATTTTATCTAACTTAGATGGACCGAAGAGCAAGAAGAATGATAATATTGAAGAGCTAAAA
324 TAAAAGTTTTACCAAACTTAGATGGACCGAAGAGAAAGAA-AATGATAATATTGAAGAGCTTAAA
* * *
112743130 AAATTGATGGACGTCATCATAAATTACCCGTTC-GAATCAGATAAGCAAGATTATTATTGTTTCA
388 AAATTGATGGACGTCATCATAAATTACCCGTTCAG-ATCAGATAAGCCAGATTATGATCGTTTCA
* * **
112743194 AAGTTCTTACTGAAGTATGCCAATGATGATGACTTACTCATTTGTCATCAAATCGTATGTCATGT
452 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATG-
* * * *
112743259 AAAA-AAATGGTTGTTTGCATTTGAAGACTATTTAAATATAATGAAATTTTTTAACAAACAGAAG
516 AAAAGAAATGGTTGCTTGCATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAAG
* * * *
112743323 AGTAATTAGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTTGTTATAATAAGATGGA
581 AGTAATTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGA-GGA
112743388 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGC-AGATAGAAGTAGCTGT
645 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCTGT
* * * * *
112743452 CAAAGCATTTAAACGAAAAACTCAATTAAATGTTTGTTTATTACGAGCAAGGGTTTCGAAT-TTC
710 CAAAGCATTTATACGGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTT-
** *
112743516 AAGTAAAATTTTTACCAAACTTTA-ATAGACCGAAGAGCAAAAGAAATGATGATATTGAAGAGCT
774 GGGTAAAATTTTTACCAAAC-TTAGATAGACCGAAGAGCAAGAGAAATGATGATATTGAAGAGCT
* *
112743580 TAAAAAATTGATAGAAG-TTATCATAAGTTATCCGTTCGGATCAGATAAGCCAAATTATGATCGT
838 TAAAAAATTGAT-GAAGATCATCATAAATTA-CCGTTCGGATCAGATAAGCCAAATTATGATCGT
112743644 TTCA
901 TTCA
* * * * * *
112743648 AAGTTCTTAATTAAGTATGCCAATGATGATAATTTACTTAGATGTCATCAAACTGTATGTCATGA
1 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATGA
* * * * *
112743713 AAAGAAATAGCTGCTTGCGTTTGAAAATTATTTATATGTAAT-AGAATTTTTTGACAAATAGAAA
66 AAAG-AATAGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATGA-AATTTTTTGACAAACAGAAG
** * ** * *
112743777 AGTGATTTAGAAC-TCAGGCGTTTACAGAGGAGCAGGGCTAGGTGGTTTAGTTATATTAGAAGAG
129 AGTGATTGGGAACGT-AGGCGTTCACAGAGGAATAAGGCTAGCTGGTTTAGTTATATTAGAAG-G
* *
112743841 ATTTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAAAAAAGCTGGTAAAAGTAGCTGT
192 ATTTTGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTAAAAGTAGCTGT
* * *
112743906 TAATGCATTTATACAGAAAACCTAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
257 CAAAGCATTTATACAGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCG
* * * *
112743971 GGTAAAAGTTTTATCAAACTTAGATGGACCGAATAGAAA-AAAATTATAATATTGAAGAGCTTTA
322 GGTAAAAGTTTTACCAAACTTAGATGGACCGAAGAGAAAGAAAATGATAATATTGAAGAGCTTAA
* * * *
112744035 AAAATTGACGGACGTCATCATAAATTATCCGTTCATATCAGATAAGCCAGATTATAATCGTTTCA
387 AAAATTGATGGACGTCATCATAAATTACCCGTTCAGATCAGATAAGCCAGATTATGATCGTTTCA
* * * *
112744100 AAGTTCTTAGTTAAGTATGCCAATTATGATGACTTATTCAGGTGTCTTCAAATCGTAGGTCATGA
452 AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGA
* * * * *
112744165 AAAGAAATTGTTACTTGCATTTGAAGATTGTTTAAATGTAATTAATTTTTTTGACAAACAGAAGA
517 AAAGAAATGGTTGCTTGCATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAAGA
* * * * * * *
112744230 GTGATTGGGAACATAAGCGTTCAAAGAGAAGTGGGAGCTAGCTAGTTTAGTTATATTAGGAGGGA
582 GTAATTGGGAACGTAGGCGTTCACAGAGGAGTAGG-GCTAGCTGGTTTAGTTATATTAGGA-GGA
* *
112744295 TTTTGTAGAGATATTTCAAGATGCTGCTCGTATTTGGGCTAGAAAAGC-AGATAGAAATAGCT
645 TTTTGTAGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCT
112744357 CCTTGTATAA
Statistics
Matches: 3786, Mismatches: 454, Indels: 168
0.86 0.10 0.04
Matches are distributed among these distances:
891 5 0.00
892 486 0.13
893 284 0.08
894 12 0.00
895 1 0.00
898 1 0.00
900 2 0.00
902 1 0.00
905 6 0.00
906 234 0.06
907 1412 0.37
908 1326 0.35
909 16 0.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (904 bp):
AAGTTCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATTGTATGTCATGA
AAAGAATAGCTGCTTGCGTTTGAAGATTGTTTAAATGTAATGAAATTTTTTGACAAACAGAAGAG
TGATTGGGAACGTAGGCGTTCACAGAGGAATAAGGCTAGCTGGTTTAGTTATATTAGAAGGATTT
TGTAGAGATATTTCAAGATGCTGCCCATATTTGGGCTAGAAAAGCGGGTAAAAGTAGCTGTCAAA
GCATTTATACAGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTCGGGTA
AAAGTTTTACCAAACTTAGATGGACCGAAGAGAAAGAAAATGATAATATTGAAGAGCTTAAAAAA
TTGATGGACGTCATCATAAATTACCCGTTCAGATCAGATAAGCCAGATTATGATCGTTTCAAAGT
TCTTAGTTAAGTATGCCAATGATGATGACTTACTCAGGTGTCATCAAATCGTATGTCATGAAAAG
AAATGGTTGCTTGCATTTGAAGATTATTTAAATGTAATGAAATTTTTTGACAAACAGAAGAGTAA
TTGGGAACGTAGGCGTTCACAGAGGAGTAGGGCTAGCTGGTTTAGTTATATTAGGAGGATTTTGT
AGAGATATTTCAAGATGCTGCCCGTATTTGGGCTAGAAAAGCGAGATAGAAGTAGCTGTCAAAGC
ATTTATACGGAAAACCCAATTAAATGTTTGTTTATTACGAGGAAGGGTTCCGAATGTTGGGTAAA
ATTTTTACCAAACTTAGATAGACCGAAGAGCAAGAGAAATGATGATATTGAAGAGCTTAAAAAAT
TGATGAAGATCATCATAAATTACCGTTCGGATCAGATAAGCCAAATTATGATCGTTTCA
Found at i:112745235 original size:448 final size:444
Alignment explanation
Indices: 112744360--112745273 Score: 1121
Period size: 448 Copynumber: 2.0 Consensus size: 444
112744350 AATAGCTCCT
* * *
112744360 TGTATAAATGCTTTGACAGCTATTTCTACCAACTTTCTATCCCAAATACAGGCAGCATCTTAAAA
1 TGTATAAATGCTTTGACAACTATTTCTACCAACTTTCTAACCCAAATACAGGCAGCATATTAAAA
* * *
112744425 TATCTCTAAAAAATTCCTCCGAATATAACTAAACTAGCTAGCCCTACTTTTCTTTAAACGCCTAC
66 TATCTCTAAAAAATTCCTCCGAATATAACTAAACCAGCTAGCCCTACTTCTCTATAAACGCCTAC
* * *
112744490 ATTCCCAATCACTCTTCTGTTTGTTAAAAAATTTAATTACATTTAAACAATCTTCAAACTAAGCA
131 ATTCCCAATCACTCTTCTATTTGTCAAAAAATTTAATTACATTTAAACAATCTTCAAACCAAGCA
* * *
112744555 GCCATTTCTTTTCATAACATACGATTTGAAGATACCTGAATAAGTCATCATCATTGGCATACCTA
196 GCCATTTCTTTTCATAACATACGATTTGAAGACACATCAATAAG--ATCATCATTGGCATACCTA
* *
112744620 AGAACTTTGAAACGATTATAATCCGGCTTATCTGATACGAACGAGTAACTTATGATGACGTCTAT
259 AGAACTTTGAAACGATCATAATCCGGCTTATCTGATACGAACGAGTAACTTATGATAACGTC--T
* * *
112744685 TAATTTTTTAAGCTCTTTAATATCATCATTTATCTTGCCCTTCGTTTCATCTAAGTTTAGTAAAA
322 CAATTTTTAAAGCTCTTTAATATCATCATTCATCTTGCCCTTCGTTTCATCTAAGTTTAGTAAAA
* *
112744750 ATTTTACCCGACATTCAAAACCTTTCCTCGTAATAAACAAACATTTAATTG-GATTTTC
387 ATTTTACCCAACATTCAAAACCATTCCTCGTAATAAACAAACATTTAATTGAG-TTTTC
** * * *
112744808 TGTATAAATAATTTGACAACTATTTCTATCC-GCTTTTTTAACCTAAATACAGGCAGCATATTAA
1 TGTATAAATGCTTTGACAACTATTTCTA-CCAAC-TTTCTAACCCAAATACAGGCAGCATATTAA
* * * * * *
112744872 AATATCTCTACAAAATTTCTCCTAATATATCTAAACCAGCTAGCCTTA-TTCCTCTATGAACGCC
64 AATATCTCTAAAAAATTCCTCCGAATATAACTAAACCAGCTAGCCCTACTT-CTCTATAAACGCC
* *
112744936 TA-AGTTCCGAATCACAT-TTCTATTTGTCAAAAAATGTT-ATTACATTTAAACAATTTTCAAAC
128 TACA-TTCCCAATCAC-TCTTCTATTTGTCAAAAAAT-TTAATTACATTTAAACAATCTTCAAAC
** ** *
112744998 GCAAGCAGTTATTTCTTTTCATGCCATACGATTTGATA-ACACATCAGTAAG-TCATCATTGGCA
190 -CAAGCAGCCATTTCTTTTCATAACATACGATTTGA-AGACACATCAATAAGATCATCATTGGCA
* * * * *
112745061 TACTTAACTAAGAATTTTGAAACGATCATAATCTGGCTTATCTGATCCGAACGTGTAATTTATGA
253 TAC----CTAAGAACTTTGAAACGATCATAATCCGGCTTATCTGATACGAACGAGTAACTTATGA
* * *
112745126 TAACGTC-CAATTTTTAAAGCT-TTTCAATATCATCATTCATTTTTCTCTTCAG-TTCATCTAAG
314 TAACGTCTCAATTTTTAAAGCTCTTT-AATATCATCATTCATCTTGCCCTTC-GTTTCATCTAAG
* * * * *
112745188 TTTGGTAAAACTTTTACCTAACATTCGAAACCATTCTTCGTAATAAACAAACATTTAATTGAGTT
377 TTTAGTAAAAATTTTACCCAACATTCAAAACCATTCCTCGTAATAAACAAACATTTAATTGAGTT
112745253 TTC
442 TTC
*
112745256 CGTATAAATGCTTTGACA
1 TGTATAAATGCTTTGACA
112745274 GCTACTTTTA
Statistics
Matches: 398, Mismatches: 53, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
447 18 0.05
448 146 0.37
449 133 0.33
450 42 0.11
451 59 0.15
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.36
Consensus pattern (444 bp):
TGTATAAATGCTTTGACAACTATTTCTACCAACTTTCTAACCCAAATACAGGCAGCATATTAAAA
TATCTCTAAAAAATTCCTCCGAATATAACTAAACCAGCTAGCCCTACTTCTCTATAAACGCCTAC
ATTCCCAATCACTCTTCTATTTGTCAAAAAATTTAATTACATTTAAACAATCTTCAAACCAAGCA
GCCATTTCTTTTCATAACATACGATTTGAAGACACATCAATAAGATCATCATTGGCATACCTAAG
AACTTTGAAACGATCATAATCCGGCTTATCTGATACGAACGAGTAACTTATGATAACGTCTCAAT
TTTTAAAGCTCTTTAATATCATCATTCATCTTGCCCTTCGTTTCATCTAAGTTTAGTAAAAATTT
TACCCAACATTCAAAACCATTCCTCGTAATAAACAAACATTTAATTGAGTTTTC
Found at i:112745637 original size:374 final size:369
Alignment explanation
Indices: 112744953--112745655 Score: 972
Period size: 374 Copynumber: 1.9 Consensus size: 369
112744943 CGAATCACAT
* * ***
112744953 TTCTATTTGTCAAAAAATGTTATTACATTTAAACAATTTTCAAACGCAAGCAGTTATTTCTTTTC
1 TTCTATTTGTCAAAAAATGTTATTACATTTAAACAATCTTCAAACACAAGCAACCATTTCTTTTC
* *
112745018 ATGCCATACGATTTGATAACACATCAGTAAGTCATCATTGGCATACTTAACTAAGAATTTTGAAA
66 ATGACATACGATTTGATAACACATCAGTAAGTCATCATTGGCATACTTAACTAAGAACTTTGAAA
* * * *
112745083 CGATCATAATCTGGCTTATCTGATCCGAACGTGTAATTTATGATAACGTCCAATTTTTAAAGCTT
131 CGATCATAATCTGGCTTATCTGATACGAACGGGTAACTTATGATAACGTCCAATTTTTAAAGCTC
*
112745148 TTCAATATCATCATTCATTTTTCTCTTCAGTTCATCTAAGTTTGGTAAAACTTTTACCTAACATT
196 TTCAATATCATCATTCATTTTGCTCTTCAGTTCATCTAAGTTTGGTAAAACTTTTACCTAACATT
* * *
112745213 CGAAACCATTCTTCGTAATAAACAAACATTTAATTGAGTTTTCCGTATAAATGC-TTTGACAGCT
261 CGAAACCATTCTCCGTAATAAACAAACATTTAATTGAGTTTTCCGTATAAATACTTTTAACAGCT
112745277 ACTTTTACCTACTCTTCTTTTAACGCCTACATTCACAATTACTC
326 ACTTTTACCTACTCTTCTTTTAACGCCTACATTCACAATTACTC
* *
112745321 TTCTGTTTGTCAAAAAAT-TTCATTACATTTAAACAATCTTCAAACACAAGTAACCATTTCTTTT
1 TTCTATTTGTCAAAAAATGTT-ATTACATTTAAACAATCTTCAAACACAAGCAACCATTTCTTTT
* *
112745385 CATGACATACGATTTGATGACACCTCAGTAAGTTACCATCATTGGCATACTTAACTAAGAACTTT
65 CATGACATACGATTTGATAACACATCAGTAAG-T--CATCATTGGCATACTTAACTAAGAACTTT
* * *
112745450 GAAACGATCATAATTCT-GCTTATTTGATACGAACGGGTAACTTATGATGATGTTCATCAATTTT
127 GAAACGATCATAA-TCTGGCTTATCTGATACGAACGGGTAACTTATGATAACG-TC--CAA-TTT
* * *
112745514 TTAAA-CTCTTCAATATTATCATTC-TTCTTGCTCTTC-GATTTATCTACGTTTGGTAAAACTTT
187 TTAAAGCTCTTCAATATCATCATTCATT-TTGCTCTTCAG-TTCATCTAAGTTTGGTAAAACTTT
* * * *
112745576 TACCTGATATTCGAAACCCTT-TCCCGTAATAAACAAACATTTAATT-AGATTTTCTGTATAAAT
250 TACCTAACATTCGAAACCATTCT-CCGTAATAAACAAACATTTAATTGAG-TTTTCCGTATAAAT
112745639 ACTTTTAACAGCTACTT
313 ACTTTTAACAGCTACTT
112745656 CTATCCATTT
Statistics
Matches: 292, Mismatches: 29, Indels: 21
0.85 0.08 0.06
Matches are distributed among these distances:
367 2 0.01
368 83 0.28
369 1 0.00
371 70 0.24
372 5 0.02
373 6 0.02
374 104 0.36
375 21 0.07
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (369 bp):
TTCTATTTGTCAAAAAATGTTATTACATTTAAACAATCTTCAAACACAAGCAACCATTTCTTTTC
ATGACATACGATTTGATAACACATCAGTAAGTCATCATTGGCATACTTAACTAAGAACTTTGAAA
CGATCATAATCTGGCTTATCTGATACGAACGGGTAACTTATGATAACGTCCAATTTTTAAAGCTC
TTCAATATCATCATTCATTTTGCTCTTCAGTTCATCTAAGTTTGGTAAAACTTTTACCTAACATT
CGAAACCATTCTCCGTAATAAACAAACATTTAATTGAGTTTTCCGTATAAATACTTTTAACAGCT
ACTTTTACCTACTCTTCTTTTAACGCCTACATTCACAATTACTC
Found at i:112746922 original size:454 final size:452
Alignment explanation
Indices: 112745284--112748616 Score: 3699
Period size: 454 Copynumber: 7.4 Consensus size: 452
112745274 GCTACTTTTA
* * * *
112745284 CCTACTCTTCTTTTAACGCCTACATTCACAATTACTCTTCTGTTTGTCAAAAAATTTCATTACAT
1 CCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTACAT
* * * *
112745349 TTAAACAATCTTCAAACACAAGTAACCATTTCTTTTCATGACATACGATTTGATGACACCTCAGT
66 TTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAGT
* * *
112745414 AAGTTACCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATTCTG-CTTATTTGAT
131 AAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAA-TCTGACTTATCTGAT
* *
112745478 -ACGAACGGGTAACTTATGATGATGTTCATCAATTTTTTAAACTCTTCAATATTATCATTCTTCT
195 CACGAACGGGTAACTTATGATGAAGTTCATCAATTTTTTAAACTCTTCAATATCATCATTCTTCT
* ** * * *
112745542 TGCTCTTCGATTTATCTACGTTTGGTAAAACTTTTACCTGATATTCGAAACCCTTTCCCGTAATA
260 TGCTTTTCGATCCATCTAAGTTTGGTAAAACTTTTA-CTGACATTCGAAA-CCTTTCTCGTAATA
* *
112745607 AACAAACATTTAATT-AGATTTTCTGTATAAATACTTTTAACAGCTACTTCTATCCATTTTATTA
323 AACAAACATTTAATTGAG-TTTTCCGTATAAATAC-TTTGACAGCTACTTCTATCCATTTT-TTA
* * * ***
112745671 GCCAAAATACGAGCAGCATCTTGAAATATCTCTA-AAAAGTTTATCCTAATATAACTAAACCAGC
385 GCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAA-TCCCTCCTAATATAACTAAACCAGC
*
112745735 TAAC
449 TAGC
* * *
112745739 CCTACTCCTCTTTAAACGCCTACATTCTCAATCACTTTTCTGTTTGTCAAAAAATTCCATTACAT
1 CCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTACAT
* * * * *
112745804 TTAAACAGTCTTCAAATGCAAGCAGTCATTTCTTTTAATGACATACGATTTGATGATACCTGAGT
66 TTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAGT
* * * *
112745869 AAGTAATTATCATTGGCATACTTAACTAAGAACTTTGAAACGATTATAATCTAACTTATCTGATC
131 AAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATCTGATC
* * * * *** * * *
112745934 -CGAACGAGTAACTTATAATGACA-TCCATCAATTTTTGAAGGACTTCAATATTATTATTCATCT
196 ACGAACGGGTAACTTATGATGA-AGTTCATCAATTTTTTAAACTCTTCAATATCATCATTCTTCT
** * * * *
112745997 TGCCCTTCGTTCCATCTAAGTTTAGTAAAAGTTTTACTCAACATTCGAAACCTTTTCTCGTAATA
260 TGCTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACT-GACATTCGAAACC-TTTCTCGTAATA
* * * * * *
112746062 AACAAACATTTAATTGGGTTTTCCATATAAATACTTTGACAACTATTTCTATCCGTTTTTCTAAC
323 AACAAACATTTAATTGAGTTTTCCGTATAAATACTTTGACAGCTACTTCTATCCATTTTT-TAGC
* * * * * *
112746127 CCAAATACAGTCAGCATCTTGAAATATCTCTACAAAATCTCTCATAATATAACTAAACTAGCTAG
387 CCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATAACTAAACCAGCTAG
112746192 C
452 C
* ** * * *
112746193 CCTACTCCTCTGTGAAA-GCCTA-AGTTCAGAATCACTTTTCTGTTTGTAAAAAAATGTCA-TAC
1 CCTACTCCTCT-TTAAACGCCTACA-TTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTAC
* * ** * **
112746255 ATTTAAACAATCTTCATACGTAAGCAGCCATTTCTTTTCATGGTATACGATTTGATAACAAATGA
64 ATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGA
*
112746320 GTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATGTGA
129 GTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATCTGA
* * * *
112746385 TCTA--AACGGGTAATTTATGATGACGTCCATCAA-TTTTTAAAGCTCTTCAATATAATCATTCT
194 TC-ACGAACGGGTAACTTATGATGAAGTTCATCAATTTTTTAAA-CTCTTCAATATCATCATTCT
* * * *
112746447 TTTTTCTCTTCGATCCATCTAAGTTTGGTAAAACTTTTATCTGACATTCGGAACTCTTTCTCGTA
257 TCTTGCTTTTCGATCCATCTAAGTTTGGTAAAACTTTTA-CTGACATTCGAAAC-CTTTCTCGTA
* * * *
112746512 ATAAACAAACATTTAATTGAGTTTTCCGTATAAATACTTTAACAGTTTCTTCTACCCACTTTTTT
320 ATAAACAAACATTTAATTGAGTTTTCCGTATAAATACTTTGACAGCTACTTCTATCCA-TTTTTT
* * * **
112746577 AACCTAAATACGGGCAGCATCTTAAAATATCTCTACAAAGTCCCTCCTAATATAACTAAACTGGC
384 AGCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATAACTAAACCAGC
112746642 TAGC
449 TAGC
* * * * * * * *
112746646 TCTACTCCTCTTTAAATGCCTACGTTCTCATTTACTCTTCTGTTTGTCAAAAAATTTCACTATAT
1 CCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTACAT
* * * *
112746711 TTAAACAATCTTCAAACGCAAACAACCATTTCTTTTAATGACATATGATTTGATGACACCTGAGT
66 TTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAGT
* * * * *
112746776 GAGTCATCATCATTGGCATACTTAACTAAAAACTTTAAAATGATCATAATCTGATTTATCTGA-C
131 AAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATCTGATC
* * * *
112746840 ACGAACGGGTAATTTATGATAAAGTTCA-CTAATTTTTTAAGCTCTTCAATATTATCATTCTTCT
196 ACGAACGGGTAACTTATGATGAAGTTCATC-AATTTTTTAAACTCTTCAATATCATCATTCTTCT
* * * * * * *
112746904 TACTTTTCAATCCATCTAAGTTTGGTAAAACTTTTACTCAATATTCAGAATCGTTCCTCGTAATA
260 TGCTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACT-GACATTC-GAAACCTTTCTCGTAATA
* *** * * *
112746969 AACAAACATTTAATTGGGTTTTTTATATAAATGCTTTGACAGTTACTTCTATTCGC-TTTTCTAG
323 AACAAACATTTAATTGAGTTTTCCGTATAAATACTTTGACAGCTACTTCTA-TC-CATTTTTTAG
* * * *
112747033 CCCAAATACGGGCAACATTTTAAAATATCTTTACAAAATCCCTCCTAATATAACTAAACCAACTA
386 CCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATAACTAAACCAGCTA
112747098 GC
451 GC
* * * * * * * * * *
112747100 CATACTCCTCTTTGAATGTCTACGTTCCCAATCATTTTTTTATTTGTCAAAAAATTCCATTACAT
1 CCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTACAT
** * * *
112747165 TTAATTAGTCTTCAAACGCAAACAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAAT
66 TTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAGT
* *
112747230 AAGTCATCATTATTGGCATACTTAACTAAGAACTTTGAAACAATCATAATCT-AGCTTATCTGAT
131 AAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGA-CTTATCTGAT
* * * *
112747294 CTA--AACGGGTAACTTATGATGACG-TCTATCAATTTTTTAAACTTTTCAATATCATTATTCAT
195 C-ACGAACGGGTAACTTATGATGAAGTTC-ATCAATTTTTTAAACTCTTCAATATCATCATTCTT
* * * * * *
112747356 CTTGCCCTTT-GTTCCATATAAGTTTGGTAAAAATTTTACCTGATATTCTAAACCTTTCCTCGTA
258 CTTG-CTTTTCGATCCATCTAAGTTTGGTAAAACTTTTA-CTGACATTCGAAACCTTT-CTCGTA
* * ** *
112747420 ATAAATAAACATTTAATTGAG-TTT-CATATAAATGTTTTGACAACTACTTCTATCCACTTTTTT
320 ATAAACAAACATTTAATTGAGTTTTCCGTATAAATACTTTGACAGCTACTTCTATCCA-TTTTTT
** * * * *
112747483 AGCCCAAATACGGGCAGCATAATGAAATGT-TATCACAAAATTCCTCCTAATATAACTAAACCAG
384 AGCCCAAATACGGGCAGCATCTTAAAATATCTCT-ACAAAATCCCTCCTAATATAACTAAACCAG
112747547 CTAGC
448 CTAGC
* * * * * * ** *
112747552 ACTACTCCTCTGTGAACGACTACATTCCCAATCACTTTTCTGTTTATTTAAAAATTCCATTACAT
1 CCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTACAT
* * * * *
112747617 TTAAACAATCTTCAAACGTAAACAGCCATTTTTTTTTATGACATACGATTTGATAACACCTGAGT
66 TTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAGT
* * * * *
112747682 AAGTTATCATCATTGACATACTTAACTAAGAACTTTGAAACGATTATAATCTGGCTTATTTGAT-
131 AAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATCTGATC
* * * * * * * * *
112747746 TCGAACGGATAATTTATGAT-AACATCCGTCAACTCTTTAAACTCTTCAATATCATCATTCTTTT
196 ACGAACGGGTAACTTATGATGAA-GTTCATCAATTTTTTAAACTCTTCAATATCATCATTCTTCT
* * * *
112747810 TG-TTCTTCGATCCATCTACGTTTGGTAAAACTTTTACCCGACATTCGGAACCTTTCCCCGTAAT
260 TGCTT-TTCGATCCATCTAAGTTTGGTAAAACTTTTA-CTGACATTCGAAACCTTT-CTCGTAAT
* * * *
112747874 AAACAAACATTTAATTAAATTTTCCGTATAAATGCTTTGACAGCTACTTCTACCCATTTTTCTAG
322 AAACAAACATTTAATTGAGTTTTCCGTATAAATACTTTGACAGCTACTTCTATCCATTTTT-TAG
* * *
112747939 CCCAAATACGGGCAGCACCTTAAAATATCTCTACAAAGTCCCTCCTAATATAACTAAACCGGCTA
386 CCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATAACTAAACCAGCTA
112748004 GC
451 GC
* * * * *
112748006 CCTACTCCTTTTTGAACGTCTA-AGTTCCCAATCACTCTTTTGTTTGTAAAAAAATTAT-ATTAC
1 CCTACTCCTCTTTAAACGCCTACA-TTCCCAATCACTCTTCTGTTTGTCAAAAAATT-TCATTAC
* * * * *
112748069 ATTTAAGCAATCTTCAAACGCAAGTAGCCATTTCGTTTCATGACATACAATTTGAAT-ACACATG
64 ATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTG-ATGACACCTG
* * *
112748133 AGTAAGTCATCATTATT-G--T-CATAACTAAGAACTTTGAAACGATCATAATCTGGCTTATCTG
128 AGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATCTG
* * * *
112748194 ATC-CGAACAGGTAACTTATGATGACGTCCATTAATTTTTTAAACTCTTCAATATCATCATTCTT
193 ATCACGAACGGGTAACTTATGATGAAGTTCATCAATTTTTTAAACTCTTCAATATCATCATTCTT
* * * * *
112748258 CTTGCTTTTC-A---GTCTAAGTTTGATAGAATTTTTACTCGACATTCGAAACCCTTCCTCGTAA
258 CTTGCTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACT-GACATTCGAAA-CCTTTCTCGTAA
* * *
112748319 TAAACAAACATTTAATT-AGATTTTTCGTATAATTACTTTGACAGCTACTTCTACCCATTTTTCT
321 TAAACAAACATTTAATTGAG-TTTTCCGTATAAATACTTTGACAGCTACTTCTATCCATTTTT-T
* * * *
112748383 AGCCCAAATACGGGCAGTATCTTAAAAAATCTCTACAAAATCTCTCCTAATATAACTAAACGAGC
384 AGCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATAACTAAACCAGC
*
112748448 TAAC
449 TAGC
* *
112748452 CCTACTCAT-TTATGAAA-GCCTACATTCCCAATCACTCTTCTATTTGTCAAAAAA-TTCTATTA
1 CCTACTCCTCTT-T-AAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTC-ATTA
112748514 CATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTG
63 CATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTG
* ** *
112748579 AATAAGTCATCATCATTAACAAACTTAACTAAGAACTT
128 AGTAAGTCATCATCATTGGCATACTTAACTAAGAACTT
112748617 GTACATTCTA
Statistics
Matches: 2431, Mismatches: 378, Indels: 143
0.82 0.13 0.05
Matches are distributed among these distances:
444 1 0.00
445 7 0.00
446 269 0.11
447 7 0.00
449 1 0.00
450 113 0.05
451 11 0.00
452 374 0.15
453 390 0.16
454 925 0.38
455 330 0.14
456 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (452 bp):
CCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTGTCAAAAAATTTCATTACAT
TTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGACATACGATTTGATGACACCTGAGT
AAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAACGATCATAATCTGACTTATCTGATC
ACGAACGGGTAACTTATGATGAAGTTCATCAATTTTTTAAACTCTTCAATATCATCATTCTTCTT
GCTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACTGACATTCGAAACCTTTCTCGTAATAAAC
AAACATTTAATTGAGTTTTCCGTATAAATACTTTGACAGCTACTTCTATCCATTTTTTAGCCCAA
ATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATAACTAAACCAGCTAGC
Found at i:112747793 original size:906 final size:900
Alignment explanation
Indices: 112745324--112748616 Score: 3992
Period size: 906 Copynumber: 3.6 Consensus size: 900
112745314 ATTACTCTTC
* * * *
112745324 TGTTTGTCAAAAAATTTCATTACATTTAAACAATCTTCAAACACAAGTAACCATTTCTTTTCATG
1 TGTTTGT-AAAAAAATTCATTACATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATG
* * * *
112745389 ACATACGATTTGATGACACCTCAGTAAGTTACCATCATTGGCATACTTAACTAAGAACTTTGAAA
65 ACATACGATTTGATGACACATGAGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAA
* * * *
112745454 CGATCATAATTCTGCTTATTTGATAC-GAACGGGTAACTTATGATGATGTTCATCAATTTTTTAA
130 CGATCATAA-TCTGCTTATCTGAT-CTAAACGGGTAACTTATGATGACGTCCATCAATTTTTTAA
* * *
112745518 ACTCTTCAATATTATCATTCTTCTTGCTCTTCGATTTATCTACGTTTGGTAAAACTTTTACCTGA
193 ACTCTTCAATATCATCATTCTTCTTGCTCTTCG-TTCATCTAAGTTTGGTAAAACTTTTACCTGA
* *
112745583 TATTCGAAACCCTTTCC-CGTAATAAACAAACATTTAATTAGATTTTCTGTATAAATACTTTTAA
257 CATTCGAAA-CCTTTCCTCGTAATAAACAAACATTTAATTAGAGTTTC-GTATAAATAC-TTTAA
* * *
112745647 CAGCTACTTCTATCCATTTTATTAGCCAAAATACGAGCAGCATCTTGAAATATCTCTA-AAAAGT
319 CAGCTACTTCTACCCATTTT-TTAGCCCAAATACGGGCAGCATCTTGAAATATCTCTACAAAA-T
** * *
112745711 TTATCCTAATATAACTAAACCAGCTAACCCTACTCCTCTTTAAACGCCTACATTCTCAATCACTT
382 TCCTCCTAATATAACTAAACCAGCTAACCCTACTCCTCTTTAAACGCCTACATTCCCAATCACTC
* * * *
112745776 TTCTGTTTGTCAAAAAATTCCATTACATTTAAACAGTCTTCAAATGCAAGCAGTCATTTCTTTTA
447 TTCTGTTTGTCAAAAAATTCCATTACATTTAAACAATCTTCAAACGCAAACAGCCATTTCTTTTA
* * * *
112745841 ATGACATACGATTTGATGATACCTGAGTAAGTAATTATCATTGGCATACTTAACTAAGAACTTTG
512 ATGACATACGATTTGATGACACCTGAGTAAGTCATCATCATTGACATACTTAACTAAGAACTTTG
* * * * *
112745906 AAACGATTATAATCTAACTTATCTGATCCGAAC-GAGTAACTTATAATGACATCCATCAATTTTT
577 AAACGATTATAATCTGACTTATCTGATACGAACGGA-TAATTTATGATAACATCC-TCAATTTTT
** * * * ** * * *
112745970 GAAGGACTTCAATATTATTATTCATCTTGCCCTTCGTTCCATCTAAGTTTAGTAAAAGTTTTACT
640 -AAGCTCTTCAATATTATCATTCTTCTTACTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACT
* *
112746035 CAACATTCGAAACCTTTTCTCGTAATAAACAAACATTTAATTGGGTTTTCCATATAAATACTTTG
704 CAACATTCG-AACCTTTCCTCGTAATAAACAAACATTTAATTGGGTTTTCCATATAAATGCTTTG
* * * * * *
112746100 ACAACTATTTCTATCCGTTTTTCTAACCCAAATACAGTCAGCATCTTGAAATATCTCTACAAAAT
768 ACAGCTACTTCTATCCGTTTTTCTAGCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAAT
* * * * * **
112746165 CTCTCATAATATAACTAAACTAGCTAGCCCTACTCCTCTGTGAAAGCCTAAGTTCAGAATCACTT
833 CCCTCCTAATATAACTAAACCAGCTAGCCCTACTCCTCTTTGAAAGTCTAAGTTCCCAATCACTT
*
112746230 TTC
898 TTT
* *
112746233 TGTTTGTAAAAAAATGTCA-TACATTTAAACAATCTTCATACGTAAGCAGCCATTTCTTTTCATG
1 TGTTTGTAAAAAAAT-TCATTACATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATG
** * *
112746297 GTATACGATTTGATAACAAATGAGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAA
65 ACATACGATTTGATGACACATGAGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAA
* *
112746362 CGATCATAATCTGACTTATGTGATCTAAACGGGTAATTTATGATGACGTCCATCAA-TTTTTAAA
130 CGATCATAATCTG-CTTATCTGATCTAAACGGGTAACTTATGATGACGTCCATCAATTTTTTAAA
* * * * *
112746426 GCTCTTCAATATAATCATTCTTTTTTCTCTTCGATCCATCTAAGTTTGGTAAAACTTTTATCTGA
194 -CTCTTCAATATCATCATTCTTCTTGCTCTTCG-TTCATCTAAGTTTGGTAAAACTTTTACCTGA
*
112746491 CATTCGGAACTCTTT-CTCGTAATAAACAAACATTTAATT-GAGTTTTCCGTATAAATACTTTAA
257 CATTCGAAAC-CTTTCCTCGTAATAAACAAACATTTAATTAGAG-TTT-CGTATAAATACTTTAA
* * * * * * *
112746554 CAGTTTCTTCTACCCACTTTTTTAACCTAAATACGGGCAGCATCTTAAAATATCTCTACAAAGTC
319 CAGCTACTTCTACCCA-TTTTTTAGCCCAAATACGGGCAGCATCTTGAAATATCTCTACAAAATT
** * * * * * * *
112746619 CCTCCTAATATAACTAAACTGGCTAGCTCTACTCCTCTTTAAATGCCTACGTTCTCATTTACTCT
383 CCTCCTAATATAACTAAACCAGCTAACCCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCT
* * * *
112746684 TCTGTTTGTCAAAAAATTTCACTATATTTAAACAATCTTCAAACGCAAACAACCATTTCTTTTAA
448 TCTGTTTGTCAAAAAATTCCATTACATTTAAACAATCTTCAAACGCAAACAGCCATTTCTTTTAA
* * * * *
112746749 TGACATATGATTTGATGACACCTGAGTGAGTCATCATCATTGGCATACTTAACTAAAAACTTTAA
513 TGACATACGATTTGATGACACCTGAGTAAGTCATCATCATTGACATACTTAACTAAGAACTTTGA
* * * * *
112746814 AATGATCATAATCTGATTTATCTGACACGAACGGGTAATTTATGATAA-AGTTCACT-AATTTTT
578 AACGATTATAATCTGACTTATCTGATACGAACGGATAATTTATGATAACA--TC-CTCAA-TTTT
*
112746877 TAAGCTCTTCAATATTATCATTCTTCTTACTTTTCAATCCATCTAAGTTTGGTAAAACTTTTACT
639 TAAGCTCTTCAATATTATCATTCTTCTTACTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACT
* * * **
112746942 CAATATTCAGAATCGTTCCTCGTAATAAACAAACATTTAATTGGGTTTTTTATATAAATGCTTTG
704 CAACATTC-GAACCTTTCCTCGTAATAAACAAACATTTAATTGGGTTTTCCATATAAATGCTTTG
* * * * * *
112747007 ACAGTTACTTCTATTCGCTTTTCTAGCCCAAATACGGGCAACATTTTAAAATATCTTTACAAAAT
768 ACAGCTACTTCTATCCGTTTTTCTAGCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAAT
* * * * *
112747072 CCCTCCTAATATAACTAAACCAACTAGCCATACTCCTCTTTGAATGTCTACGTTCCCAATCATTT
833 CCCTCCTAATATAACTAAACCAGCTAGCCCTACTCCTCTTTGAAAGTCTAAGTTCCCAATCACTT
112747137 TTT
898 TTT
* * ** * *
112747140 TATTTGTCAAAAAATTCCATTACATTTAATTAGTCTTCAAACGCAAACAGCCATTTCTTTTCATG
1 TGTTTGTAAAAAAATT-CATTACATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATG
* * *
112747205 ACATACGATTTGATGACACCTGAATAAGTCATCATTATTGGCATACTTAACTAAGAACTTTGAAA
65 ACATACGATTTGATGACACATGAGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAA
* *
112747270 CAATCATAATCTAGCTTATCTGATCTAAACGGGTAACTTATGATGACGTCTATCAATTTTTTAAA
130 CGATCATAATCT-GCTTATCTGATCTAAACGGGTAACTTATGATGACGTCCATCAATTTTTTAAA
* * * * * * * *
112747335 CTTTTCAATATCATTATTCATCTTGCCCTTTGTTCCATATAAGTTTGGTAAAAATTTTACCTGAT
194 CTCTTCAATATCATCATTCTTCTTGCTCTTCGTT-CATCTAAGTTTGGTAAAACTTTTACCTGAC
* * * ** * *
112747400 ATTCTAAACCTTTCCTCGTAATAAATAAACATTTAATT-GAGTTTCATATAAATGTTTTGACAAC
258 ATTCGAAACCTTTCCTCGTAATAAACAAACATTTAATTAGAGTTTCGTATAAATACTTTAACAGC
* ** * *
112747464 TACTTCTATCCACTTTTTTAGCCCAAATACGGGCAGCATAATGAAATGT-TATCACAAAATTCCT
323 TACTTCTACCCA-TTTTTTAGCCCAAATACGGGCAGCATCTTGAAATATCTCT-ACAAAATTCCT
* * * * * *
112747528 CCTAATATAACTAAACCAGCTAGCACTACTCCTCTGTGAACGACTACATTCCCAATCACTTTTCT
386 CCTAATATAACTAAACCAGCTAACCCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCT
* ** * * *
112747593 GTTTATTTAAAAATTCCATTACATTTAAACAATCTTCAAACGTAAACAGCCATTTTTTTTTATGA
451 GTTTGTCAAAAAATTCCATTACATTTAAACAATCTTCAAACGCAAACAGCCATTTCTTTTAATGA
* *
112747658 CATACGATTTGATAACACCTGAGTAAGTTATCATCATTGACATACTTAACTAAGAACTTTGAAAC
516 CATACGATTTGATGACACCTGAGTAAGTCATCATCATTGACATACTTAACTAAGAACTTTGAAAC
* * * * *
112747723 GATTATAATCTGGCTTATTTGATTCGAACGGATAATTTATGATAACATCCGTCAACTCTTTAAAC
581 GATTATAATCTGACTTATCTGATACGAACGGATAATTTATGATAACATCC-TCAA-TTTTTAAGC
* ** * * *
112747788 TCTTCAATATCATCATTCTT-TTTGTTCTTCGATCCATCTACGTTTGGTAAAACTTTTACCCGAC
644 TCTTCAATATTATCATTCTTCTTACTT-TTCGATCCATCTAAGTTTGGTAAAACTTTTACTCAAC
* *** *
112747852 ATTCGGAACCTTTCCCCGTAATAAACAAACATTTAATTAAATTTTCCGTATAAATGCTTTGACAG
708 ATTC-GAACCTTTCCTCGTAATAAACAAACATTTAATTGGGTTTTCCATATAAATGCTTTGACAG
* * * *
112747917 CTACTTCTACCCATTTTTCTAGCCCAAATACGGGCAGCACCTTAAAATATCTCTACAAAGTCCCT
772 CTACTTCTATCCGTTTTTCTAGCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCT
* * * *
112747982 CCTAATATAACTAAACCGGCTAGCCCTACTCCTTTTTGAACGTCTAAGTTCCCAATCACTCTTT
837 CCTAATATAACTAAACCAGCTAGCCCTACTCCTCTTTGAAAGTCTAAGTTCCCAATCACTTTTT
* * * *
112748046 TGTTTGTAAAAAAATTATATTACATTTAAGCAATCTTCAAACGCAAGTAGCCATTTCGTTTCATG
1 TGTTTGTAAAAAAATT-CATTACATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATG
* * *
112748111 ACATACAATTTGAAT-ACACATGAGTAAGTCATCATTATT-G--T-CATAACTAAGAACTTTGAA
65 ACATACGATTTG-ATGACACATGAGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAA
** * *
112748171 ACGATCATAATCTGGCTTATCTGATCCGAACAGGTAACTTATGATGACGTCCATTAATTTTTTAA
129 ACGATCATAATCT-GCTTATCTGATCTAAACGGGTAACTTATGATGACGTCCATCAATTTTTTAA
* * *
112748236 ACTCTTCAATATCATCATTCTTCTTG--CTT--TTCAGTCTAAGTTTGATAGAATTTTTA-CTCG
193 ACTCTTCAATATCATCATTCTTCTTGCTCTTCGTTCA-TCTAAGTTTGGTAAAACTTTTACCT-G
* * * *
112748296 ACATTCGAAACCCTTCCTCGTAATAAACAAACATTTAATTAGATTTTTCGTATAATTACTTTGAC
256 ACATTCGAAACCTTTCCTCGTAATAAACAAACATTTAATTAGA-GTTTCGTATAAATACTTTAAC
* * *
112748361 AGCTACTTCTACCCATTTTTCTAGCCCAAATACGGGCAGTATCTTAAAAAATCTCTACAAAA-TC
320 AGCTACTTCTACCCATTTTT-TAGCCCAAATACGGGCAGCATCTTGAAATATCTCTACAAAATTC
* *
112748425 TCTCCTAATATAACTAAACGAGCTAACCCTACTCAT-TTATGAAA-GCCTACATTCCCAATCACT
384 -CTCCTAATATAACTAAACCAGCTAACCCTACTCCTCTT-T-AAACGCCTACATTCCCAATCACT
* * *
112748488 CTTCTATTTGTCAAAAAATTCTATTACATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTT
446 CTTCTGTTTGTCAAAAAATTCCATTACATTTAAACAATCTTCAAACGCAAACAGCCATTTCTTTT
* * * *
112748553 CATGACATACGATTTGATGACACCTGAATAAGTCATCATCATTAACAAACTTAACTAAGAACTT
511 AATGACATACGATTTGATGACACCTGAGTAAGTCATCATCATTGACATACTTAACTAAGAACTT
112748617 GTACATTCTA
Statistics
Matches: 2034, Mismatches: 313, Indels: 83
0.84 0.13 0.03
Matches are distributed among these distances:
897 4 0.00
898 57 0.03
899 10 0.00
900 227 0.11
901 4 0.00
902 99 0.05
903 1 0.00
904 1 0.00
905 10 0.00
906 583 0.29
907 519 0.26
908 498 0.24
909 21 0.01
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (900 bp):
TGTTTGTAAAAAAATTCATTACATTTAAACAATCTTCAAACGCAAGCAGCCATTTCTTTTCATGA
CATACGATTTGATGACACATGAGTAAGTCATCATCATTGGCATACTTAACTAAGAACTTTGAAAC
GATCATAATCTGCTTATCTGATCTAAACGGGTAACTTATGATGACGTCCATCAATTTTTTAAACT
CTTCAATATCATCATTCTTCTTGCTCTTCGTTCATCTAAGTTTGGTAAAACTTTTACCTGACATT
CGAAACCTTTCCTCGTAATAAACAAACATTTAATTAGAGTTTCGTATAAATACTTTAACAGCTAC
TTCTACCCATTTTTTAGCCCAAATACGGGCAGCATCTTGAAATATCTCTACAAAATTCCTCCTAA
TATAACTAAACCAGCTAACCCTACTCCTCTTTAAACGCCTACATTCCCAATCACTCTTCTGTTTG
TCAAAAAATTCCATTACATTTAAACAATCTTCAAACGCAAACAGCCATTTCTTTTAATGACATAC
GATTTGATGACACCTGAGTAAGTCATCATCATTGACATACTTAACTAAGAACTTTGAAACGATTA
TAATCTGACTTATCTGATACGAACGGATAATTTATGATAACATCCTCAATTTTTAAGCTCTTCAA
TATTATCATTCTTCTTACTTTTCGATCCATCTAAGTTTGGTAAAACTTTTACTCAACATTCGAAC
CTTTCCTCGTAATAAACAAACATTTAATTGGGTTTTCCATATAAATGCTTTGACAGCTACTTCTA
TCCGTTTTTCTAGCCCAAATACGGGCAGCATCTTAAAATATCTCTACAAAATCCCTCCTAATATA
ACTAAACCAGCTAGCCCTACTCCTCTTTGAAAGTCTAAGTTCCCAATCACTTTTT
Found at i:112749119 original size:13 final size:14
Alignment explanation
Indices: 112749104--112749157 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 14
112749094 TATTAAGTAT
112749104 TTACTTATAATAT-
1 TTACTTATAATATA
112749117 TTACTTATATTATATTA
1 TTACTTATA--ATA-TA
112749134 TTA-TTATAATATA
1 TTACTTATAATATA
112749147 TTACTTA-AATA
1 TTACTTATAATA
112749158 AAGAATGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
13 18 0.50
14 6 0.17
15 3 0.08
16 6 0.17
17 3 0.08
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (14 bp):
TTACTTATAATATA
Found at i:112752528 original size:38 final size:35
Alignment explanation
Indices: 112752469--112752586 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
112752459 TCAATCATGC
*
112752469 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
112752508 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
112752539 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
112752570 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
112752587 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:112752530 original size:31 final size:31
Alignment explanation
Indices: 112752492--112752586 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
112752482 CCTTTTCATA
*
112752492 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
112752523 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
112752554 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
112752585 TT
1 TT
112752587 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:112752829 original size:24 final size:24
Alignment explanation
Indices: 112752778--112752896 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
112752768 GCTTTATCAT
*
112752778 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
112752803 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
112752827 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
112752850 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
112752874 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
112752897 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:112752857 original size:47 final size:48
Alignment explanation
Indices: 112752778--112752896 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
112752768 GCTTTATCAT
*
112752778 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
112752827 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
112752874 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
112752897 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:112752971 original size:19 final size:19
Alignment explanation
Indices: 112752947--112752984 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
112752937 TATGATTACC
112752947 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
112752966 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
112752985 ACCATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (19 bp):
TCATGTGCATATCATACAT
Found at i:112753060 original size:25 final size:25
Alignment explanation
Indices: 112753028--112753075 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
112753018 ATACATAAAC
* * *
112753028 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
112753053 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
112753076 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:112760623 original size:38 final size:35
Alignment explanation
Indices: 112760564--112760681 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
112760554 TCAATCATGC
*
112760564 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
112760603 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
112760634 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
112760665 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
112760682 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:112760625 original size:31 final size:31
Alignment explanation
Indices: 112760587--112760681 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
112760577 CCTTTTCATA
*
112760587 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
112760618 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
112760649 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
112760680 TT
1 TT
112760682 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:112760920 original size:24 final size:24
Alignment explanation
Indices: 112760869--112760964 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
112760859 GCTTTATCAT
*
112760869 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
112760894 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
112760918 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
112760942 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
112760965 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 52 0.81
25 12 0.19
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:112771677 original size:40 final size:39
Alignment explanation
Indices: 112771632--112771761 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
112771622 CGGAATACAA
112771632 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* **
112771672 CCGGATAGAATGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
112771712 CCGGATGTAGCCACTAGCGC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
112771752 CCGGATATAA
1 CCGGATATAA
112771762 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:112777858 original size:40 final size:40
Alignment explanation
Indices: 112777803--112777909 Score: 153
Period size: 40 Copynumber: 2.7 Consensus size: 40
112777793 TATTCGGATG
112777803 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* *
112777843 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* **
112777883 ATAACCGGGTTAAG-TCCCGAAGGCATT
1 ATATCCGGACTAAGAT-CCGAAGGCATT
112777910 CGTGTGGGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.02
40 59 0.98
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
Found at i:112777921 original size:40 final size:40
Alignment explanation
Indices: 112777877--112777953 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
112777867 AATTGTGCTA
112777877 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
112777917 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTG
112777954 CTGGTTGTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (40 bp):
GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGG
Found at i:112789636 original size:40 final size:40
Alignment explanation
Indices: 112789577--112789769 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 40
112789567 CAATTGAATG
* * * *
112789577 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
112789617 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
112789657 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
112789697 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
112789737 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
112789770 TGTGGATATA
Statistics
Matches: 128, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 124 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:112789715 original size:80 final size:80
Alignment explanation
Indices: 112789579--112789769 Score: 224
Period size: 80 Copynumber: 2.4 Consensus size: 80
112789569 ATTGAATGAT
* * ** * * *
112789579 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGG-CAT
*
112789643 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
** *
112789659 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCATT
** *
112789724 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
112789739 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
112789770 TGTGGATATA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 2 0.02
80 91 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:112791732 original size:27 final size:27
Alignment explanation
Indices: 112791640--112791735 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
112791630 CCCTCAATCA
* *
112791640 GTAAAATGACTATTTTG-AC-TTTATGCG
1 GTAAAATGACTGTTTTGCCCTTTTAT--G
* *
112791667 GTAAAATGACTATTTTGCCCTTTTGTG
1 GTAAAATGACTGTTTTGCCCTTTTATG
112791694 GTAAAATGACTGTTTTGCCCTTTTATG
1 GTAAAATGACTGTTTTGCCCTTTTATG
*
112791721 GTAAGATGACTGTTT
1 GTAAAATGACTGTTT
112791736 CACACCTATG
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
27 57 0.92
28 1 0.02
29 4 0.06
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (27 bp):
GTAAAATGACTGTTTTGCCCTTTTATG
Found at i:112792084 original size:18 final size:18
Alignment explanation
Indices: 112792058--112792110 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
112792048 GGACTTGCAT
112792058 ACTGTTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
*
112792076 ACTGCTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
*
112792094 ACTGTTTATTGTTACTG
1 ACTGTTTACTGTTACTG
112792111 GAATGGGCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:112794719 original size:323 final size:323
Alignment explanation
Indices: 112794130--112794775 Score: 1123
Period size: 323 Copynumber: 2.0 Consensus size: 323
112794120 GAATTAGAGC
* *
112794130 ATAAAGCTCACTGGGCTTTGAAACAATTGAATTTGAATCTTAAGCAAGTCGGTGAGAGAAAGATG
1 ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGCAAGCCGGTGAGAGAAAGATG
* *
112794195 CTCCAACTTGATGAGTTGGAAGAGATGATGTTATTTTCACACGAGAATTCCAAGATGTGTAAAGA
66 CT-CAACTTGATGAGTTGGAAGAGATGATGTTATTTGCACACGAGAATGCCAAGATGTGTAAAGA
* *
112794260 AAAATCTAAGAGGTGGCATGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
130 AAAATATAAGAGGTGGCACGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
*
112794325 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGGACCTTAT
195 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGAACCTTAT
112794390 ACCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTTA
260 ACCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTTA
* *
112794454 ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGTAAGCCGGTGAGAGAAGGATG
1 ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGCAAGCCGGTGAGAGAAAGATG
* * *
112794519 CT-AAGCTTGATGAGTTGGAAGAGTTGATGTTATTTGCATACGAGAATGCCAATATGTGTAAAGA
66 CTCAA-CTTGATGAGTTGGAAGAGATGATGTTATTTGCACACGAGAATGCCAAGATGTGTAAAGA
* *
112794583 AAAATATAAGAGGTGGCGCGATAGTTATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
130 AAAATATAAGAGGTGGCACGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGT
*
112794648 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAGGAAAGCTCAAATCTTGATGGAAAGAACCTTAT
195 TGTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGAACCTTAT
*
112794713 ACCATCTATAAAGTTTATCCATATGGAGCTGTAGAATTGTACGACAACCATGGATGTACGTTT
260 ACCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTT
112794776 CAAGTTAATG
Statistics
Matches: 305, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
322 2 0.01
323 240 0.79
324 63 0.21
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (323 bp):
ATAAAGCTCACTGGACTTTGAAACAATTGAATTTGAATCTTAAGCAAGCCGGTGAGAGAAAGATG
CTCAACTTGATGAGTTGGAAGAGATGATGTTATTTGCACACGAGAATGCCAAGATGTGTAAAGAA
AAATATAAGAGGTGGCACGATAGTCATATACAACCTCGAGAATTCAGAGAAGGTCAGAAAGTGTT
GTTGTTTAATTTGAGGCTAAGGTCATTTTCAAGAAAGCTCAAATCTTGATGGAAAGAACCTTATA
CCATCTATAAAGTTTATCCATATGGAGCTATAGAATTGTACGACAACCATGGATGTACGTTTA
Found at i:112805038 original size:40 final size:40
Alignment explanation
Indices: 112804972--112805122 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
112804962 AAATTGAATG
* *
112804972 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
112805011 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
112805051 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
112805091 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
112805123 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:112805105 original size:80 final size:79
Alignment explanation
Indices: 112804972--112805122 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
112804962 AAATTGAATG
*
112804972 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
112805037 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * *
112805051 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
112805114 CATTTGTGC
63 CAATTGTGC
112805123 ACATGGTTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.29
80 45 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:112813950 original size:29 final size:29
Alignment explanation
Indices: 112813917--112813989 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
112813907 GTGACGAGAT
112813917 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
112813946 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
112813975 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
112813990 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:112814005 original size:29 final size:29
Alignment explanation
Indices: 112813973--112814049 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
112813963 GCTGGAAATA
* *
112813973 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
112814002 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
112814031 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
112814050 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:112814006 original size:58 final size:59
Alignment explanation
Indices: 112813917--112814049 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
112813907 GTGACGAGAT
* * *
112813917 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
112813975 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
112814033 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
112814050 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:112821749 original size:29 final size:29
Alignment explanation
Indices: 112821716--112821788 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
112821706 GTGACGAGAT
112821716 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
112821745 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
112821774 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
112821789 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:112821804 original size:29 final size:29
Alignment explanation
Indices: 112821772--112821848 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
112821762 GCTGGAAATA
* *
112821772 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
112821801 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
112821830 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
112821849 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:112821805 original size:58 final size:59
Alignment explanation
Indices: 112821716--112821848 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
112821706 GTGACGAGAT
* * *
112821716 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
112821774 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
112821832 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
112821849 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:112826074 original size:6 final size:6
Alignment explanation
Indices: 112826063--112826089 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
112826053 ACTCAACTCT
112826063 CATATA CATATA CATATA CATATA CAT
1 CATATA CATATA CATATA CATATA CAT
112826090 GTGACTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:112827813 original size:10 final size:10
Alignment explanation
Indices: 112827781--112827806 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
112827771 GGCCATATAC
112827781 ATATAACTCA
1 ATATAACTCA
112827791 ATATAACTCA
1 ATATAACTCA
112827801 ATATAA
1 ATATAA
112827807 GCCAATACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (10 bp):
ATATAACTCA
Found at i:112828871 original size:48 final size:47
Alignment explanation
Indices: 112828706--112828917 Score: 178
Period size: 49 Copynumber: 4.4 Consensus size: 47
112828696 CCGACGCCAC
* * * * * *
112828706 GTCCTAGACATGGTCTTACACTGGCTAGCA-CATCAAAGTCGATGCCAT
1 GTCCCAGACAT-GTCTTACACTGGCTTGCATAATCGAGGCCGATG-CAT
* * * * * * *
112828754 GTCCCAGACAGGTCTTCCACTGACTTTCATATATCGACGCCGATACCGT
1 GTCCCAGACATGTCTTACACTGGCTTGCATA-ATCGAGGCCGAT-GCAT
* * * *
112828803 TTCCCAGACAGGTTTTACACTGGCTTGCATATCTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTGGCTTGCATA-ATCGAGGCCGATGCAT
* *
112828851 GTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GTGCCCGATGCAT
1 GTCCCAGACATGTCTTACACTGGCT-TGCATAATCGAGGCCGATGCAT
112828897 GTCCCAGACATGTCTTACACT
1 GTCCCAGACATGTCTTACACT
112828918 AGTACACATA
Statistics
Matches: 133, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
46 32 0.24
47 15 0.11
48 37 0.28
49 49 0.37
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GTCCCAGACATGTCTTACACTGGCTTGCATAATCGAGGCCGATGCAT
Found at i:112832841 original size:25 final size:25
Alignment explanation
Indices: 112832813--112832864 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
112832803 AAAACCAAAG
*
112832813 TTGTCGAATAATCGTCCCGTTTCGA
1 TTGTCGAATAATCATCCCGTTTCGA
112832838 TTGTCGAATAATCATCCCGTTTCGA
1 TTGTCGAATAATCATCCCGTTTCGA
112832863 TT
1 TT
112832865 ATCGTTGTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (25 bp):
TTGTCGAATAATCATCCCGTTTCGA
Found at i:112833150 original size:42 final size:43
Alignment explanation
Indices: 112833103--112833217 Score: 171
Period size: 43 Copynumber: 2.7 Consensus size: 43
112833093 TATGTGTTCT
*
112833103 CGTGTAAGACCACATCT-GGACATTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATTA
*
112833145 CGTGTAAGACC-CTGTCTAGGACAGTGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTAGGACATTGGCATCGATATGTGATTA
* *
112833188 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACATTGGCAT
112833218 TGTACGATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
41 1 0.02
42 14 0.22
43 49 0.75
44 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACATTGGCATCGATATGTGATTA
Found at i:112837627 original size:40 final size:40
Alignment explanation
Indices: 112837554--112837760 Score: 182
Period size: 40 Copynumber: 5.2 Consensus size: 40
112837544 CAATTGAATG
* * ** *
112837554 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * * **
112837594 ATACCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
112837634 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
112837674 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
112837714 CTATCCGGGCTAAGACCCAAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
112837754 ATATCCG
1 ATATCCG
112837761 ATTGTATTCC
Statistics
Matches: 137, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
39 4 0.03
40 129 0.94
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:112837692 original size:80 final size:80
Alignment explanation
Indices: 112837556--112837760 Score: 216
Period size: 80 Copynumber: 2.6 Consensus size: 80
112837546 ATTGAATGAT
* * ** * * * *
112837556 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
112837620 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
112837636 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
112837701 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* * *
112837716 ATCCGGGCTAAGACCCAAAGGCATTCGTGCATGTGGTTATATCCG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCG
112837761 ATTGTATTCC
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 2 0.02
80 100 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:112853235 original size:55 final size:54
Alignment explanation
Indices: 112853134--112853309 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
112853124 CACTATTGCT
* * * * *
112853134 ATGT-AAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 ATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACC
* **
112853187 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGGGC
1 ATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATACCATGTAAGACC
* * * * *
112853242 ATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 ATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACC
112853295 ATGTCAAGACATGGC
1 ATGTCAAGACATGGC
112853310 CATGGTAAGT
Statistics
Matches: 100, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.04
53 33 0.33
54 19 0.19
55 40 0.40
56 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.22
Consensus pattern (54 bp):
ATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACC
Found at i:112853322 original size:53 final size:54
Alignment explanation
Indices: 112853134--112853321 Score: 186
Period size: 53 Copynumber: 3.5 Consensus size: 54
112853124 CACTATTGCT
* * * * *
112853134 ATGT-AAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 ATGTCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGGATACCATGTAAGACC
* * * **
112853187 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGGGC
1 ATGTCAAGACATGGCATTGGTAAGTT-CTATAAGGC-AAGGATACCATGTAAGACC
* * * * *
112853242 ATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 ATGTCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGGATACCATGTAAGACC
112853295 ATGTCAAGACATGGCCA-TGGTAAGTTC
1 ATGTCAAGACATGG-CATTGGTAAGTTC
112853322 AAAATAGAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
52 4 0.04
53 42 0.38
54 20 0.18
55 40 0.36
56 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (54 bp):
ATGTCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGGATACCATGTAAGACC
Found at i:112859298 original size:12 final size:11
Alignment explanation
Indices: 112859281--112859323 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
112859271 TTATGCAATT
112859281 ATTGTTATTAG
1 ATTGTTATTAG
112859292 AATTGTTATT--
1 -ATTGTTATTAG
112859302 ATTGTTATTAG
1 ATTGTTATTAG
112859313 TATTGTTATTA
1 -ATTGTTATTA
112859324 TTGAGTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 9 0.32
12 19 0.68
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (11 bp):
ATTGTTATTAG
Found at i:112859304 original size:21 final size:21
Alignment explanation
Indices: 112859278--112859326 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
112859268 TTATTATGCA
112859278 ATTATTGTTATTAGAATTGTT
1 ATTATTGTTATTAGAATTGTT
*
112859299 ATTATTGTTATTAGTATTGTT
1 ATTATTGTTATTAGAATTGTT
112859320 ATTATTG
1 ATTATTG
112859327 AGTTATGCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (21 bp):
ATTATTGTTATTAGAATTGTT
Found at i:112859686 original size:47 final size:47
Alignment explanation
Indices: 112859621--112859842 Score: 243
Period size: 47 Copynumber: 4.6 Consensus size: 47
112859611 GCATTGGCAC
112859621 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
112859668 TAAGACAAGGATAGCATGTAAGACCATGTTTGGAACATGTCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *** *
112859715 TAAGATAAGGATATCATGTAA-ACCATGCCAAGG--CATGGCATTGATAAGTTCTA
1 TAAGATAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--T--G----G
* *
112859768 TAAGACAAGGATACCATGTAAGCCCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
112859815 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
112859843 CCAAGGCATG
Statistics
Matches: 143, Mismatches: 20, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
45 8 0.06
46 6 0.04
47 91 0.64
49 1 0.01
51 1 0.01
53 22 0.15
54 5 0.03
55 9 0.06
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:112859788 original size:100 final size:101
Alignment explanation
Indices: 112859668--112860005 Score: 412
Period size: 100 Copynumber: 3.3 Consensus size: 101
112859658 TGGCATTTGG
* *
112859668 TAAGACAAGGATAGCATGTAAGACCATGTTTGGAACATGTCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
112859733 TAA-ACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
112859768 TAAGACAAGGATACCATGTAAGCCCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
112859833 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * *** ** *
112859869 TAAGGCAAGGAAATCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG-ATA
* * * *
112859933 GGTCCTATGTAAGGCCATGCCAAGGCATGGAATTGGTGAGTTC-A
61 --T-C-ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
112859977 TAAGGCAAGGATACCACGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
112860006 CAATACATGG
Statistics
Matches: 208, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
100 75 0.36
101 58 0.28
102 2 0.01
103 1 0.00
104 8 0.04
105 2 0.01
107 1 0.00
108 28 0.13
109 33 0.16
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (101 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:112859885 original size:54 final size:54
Alignment explanation
Indices: 112859821--112860004 Score: 230
Period size: 54 Copynumber: 3.4 Consensus size: 54
112859811 TTGGTAAGAT
*
112859821 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
112859875 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
112859930 AAAGG-T-CCTATGTAAGGCCATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGC
1 -AAGGATATC-ATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *
112859983 AAGGATACCACGTAAGACCATG
1 AAGGATATCATGTAAGACCATG
112860005 TCAATACATG
Statistics
Matches: 112, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
52 4 0.04
53 19 0.17
54 45 0.40
55 40 0.36
56 4 0.04
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:112859951 original size:55 final size:53
Alignment explanation
Indices: 112859830--112860015 Score: 196
Period size: 55 Copynumber: 3.5 Consensus size: 53
112859820 TAAGGATATC
* * ***
112859830 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGTCCT
*
112859883 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCT
1 -ATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGTCCT
* * * *
112859939 ATGTAAGGCCATGCCAAGGCATGGAATTGGTGAGTTC-ATAAGGCAAGGATACC-
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGG-T-CCT
* * *
112859992 ACGTAAGACCATGTCAATACATGG
1 ATGTAAGACCATGCCAAGACATGG
112860016 AAATGGTAAG
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
52 4 0.04
53 27 0.24
54 36 0.32
55 40 0.36
56 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGTCCT
Found at i:112863361 original size:45 final size:45
Alignment explanation
Indices: 112863307--112863419 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
112863297 ATCTGCATTA
** *
112863307 TTTTGTTGTGTACCCACAGCCATAGGTAGATTCTATCAACGATGT
1 TTTTGTTGTGTACCCACAGCCATAGACAGATTCCATCAACGATGT
*
112863352 TTTTGTTGTGTACCCACAGCCATAGACAGATTCCATCAATGATGT
1 TTTTGTTGTGTACCCACAGCCATAGACAGATTCCATCAACGATGT
**
112863397 TTTTGTTGTGTGTCCACAGCCAT
1 TTTTGTTGTGTACCCACAGCCAT
112863420 TGGCAGTTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (45 bp):
TTTTGTTGTGTACCCACAGCCATAGACAGATTCCATCAACGATGT
Found at i:112866286 original size:5 final size:5
Alignment explanation
Indices: 112866270--112866306 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
112866260 TTTGCTTCTA
112866270 ATATG A-ATG ATATG ATATG ATATG ATATG ATATG ATA
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATA
112866307 CGTAGAGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (5 bp):
ATATG
Found at i:112867213 original size:20 final size:22
Alignment explanation
Indices: 112867188--112867229 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
112867178 TTGGGTTAGG
112867188 TACCCATTATT-C-AACATCAA
1 TACCCATTATTACAAACATCAA
112867208 TACCCATTATTACAAACATCAA
1 TACCCATTATTACAAACATCAA
112867230 CTAATAAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 1 0.05
22 8 0.40
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (22 bp):
TACCCATTATTACAAACATCAA
Found at i:112874003 original size:43 final size:43
Alignment explanation
Indices: 112873955--112874195 Score: 401
Period size: 43 Copynumber: 5.6 Consensus size: 43
112873945 CCGGCATTAC
* *
112873955 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCTGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
112873998 GCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
** *
112874041 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTAGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
112874084 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
112874127 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
112874170 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
112874196 TAATACCAGC
Statistics
Matches: 183, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 183 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:112874185 original size:129 final size:129
Alignment explanation
Indices: 112873955--112874195 Score: 446
Period size: 129 Copynumber: 1.9 Consensus size: 129
112873945 CCGGCATTAC
*
112873955 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCTGTACGAAGCCTGCTAGGCACAAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACAAAGGCCCG
112874020 AATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTAGCATGAA
66 AATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTAGCATGAA
*
112874084 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACAAAGGCCCG
**
112874149 AATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
66 AATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATA
112874196 TAATACCAGC
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 108 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.12
Consensus pattern (129 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACAAAGGCCCG
AATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACTAGCATGAA
Found at i:112874236 original size:38 final size:38
Alignment explanation
Indices: 112874188--112874295 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
112874178 GGCACGAAGG
* * * *
112874188 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
112874226 CCCTGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
112874264 CCCGGATATTTTACCAGCACGAAGCCTGCGGG
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG
112874296 TCTTTAAGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:112879622 original size:43 final size:43
Alignment explanation
Indices: 112879587--112879676 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 43
112879577 CCGGCATTAC
*
112879587 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
112879630 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
112879673 GCCT
1 GCCT
112879677 CGAATACACA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.29, C:0.34, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:112879701 original size:27 final size:27
Alignment explanation
Indices: 112879638--112879703 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
112879628 AAGCCTGCTA
112879638 GGCACGAAGGCC-CGAATACACATCACC
1 GGCACGAA-GCCTCGAATACACATCACC
112879665 GGCACGAAGCCTCGAATACACATCACC
1 GGCACGAAGCCTCGAATACACATCACC
112879692 GGCACGAAGCCT
1 GGCACGAAGCCT
112879704 ACTAGGCACG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.32, C:0.36, G:0.23, T:0.09
Consensus pattern (27 bp):
GGCACGAAGCCTCGAATACACATCACC
Found at i:112879709 original size:70 final size:70
Alignment explanation
Indices: 112879595--112879730 Score: 229
Period size: 70 Copynumber: 1.9 Consensus size: 70
112879585 ACGCCTGCTA
* * *
112879595 GGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTACTAGGCACGAAGGCCCAAATACACA
112879660 TCACC
66 TCACC
112879665 GGCACGAA-GCCTCGAATACACATCACCGGCACGAAGCCTACTAGGCACGAAGGCCCAAATACAC
1 GGCACGAAGGCC-CGAATACACATCACCGGCACGAAGCCTACTAGGCACGAAGGCCCAAATACAC
112879729 AT
65 AT
112879731 GTAACACCCC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 3 0.05
70 59 0.95
ACGTcount: A:0.33, C:0.34, G:0.23, T:0.10
Consensus pattern (70 bp):
GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTACTAGGCACGAAGGCCCAAATACACA
TCACC
Found at i:112890511 original size:38 final size:38
Alignment explanation
Indices: 112890468--112890570 Score: 145
Period size: 38 Copynumber: 2.7 Consensus size: 38
112890458 GAAGGCCCGA
* * *
112890468 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCT-G
1 ATATAATACCAGCACGAAGCCTGCGGGATTTA-ACCTGG
112890506 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTGG
**
112890544 ATATTTTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
112890571 TCTTTAAGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 3 0.05
38 56 0.95
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTGG
Found at i:112893521 original size:79 final size:80
Alignment explanation
Indices: 112893423--112893605 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
112893413 TACTCGTTCA
* *
112893423 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
112893486 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
112893503 ATTGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
112893567 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
112893582 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
112893606 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:112893605 original size:40 final size:40
Alignment explanation
Indices: 112893421--112893605 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
112893411 GCTACTCGTT
* *
112893421 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
112893461 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
112893501 CCATTGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
112893540 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
112893581 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
112893606 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:112906303 original size:28 final size:28
Alignment explanation
Indices: 112906251--112906330 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
112906241 GAAGTAAAAG
* *
112906251 TTTGTGGCATAAATATGAAACAAAAAGTT
1 TTTGTGGCAT-AATATGAAAGAAAAAGCT
*
112906280 TTTGTGACATAATATGAAAG-AAAAGCT
1 TTTGTGGCATAATATGAAAGAAAAAGCT
*
112906307 TTTGTGGCTTAATATGAAAGAAAA
1 TTTGTGGCATAATATGAAAGAAAA
112906331 GCCTGTGGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 24 0.53
28 12 0.27
29 9 0.20
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (28 bp):
TTTGTGGCATAATATGAAAGAAAAAGCT
Found at i:112911589 original size:30 final size:30
Alignment explanation
Indices: 112911555--112911615 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
112911545 TTTTTGAGCC
112911555 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
112911585 TAGGGGCAAAATTGTAATTTTGTAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
112911615 T
1 T
112911616 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:112914418 original size:47 final size:48
Alignment explanation
Indices: 112914343--112914485 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 48
112914333 GCTTTATCAT
* *
112914343 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCATAAGCCCTTTTA
* *
112914392 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTA
*
112914439 ATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTT
112914486 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 44 0.51
48 30 0.35
49 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTTA
Found at i:112914443 original size:71 final size:72
Alignment explanation
Indices: 112914343--112914484 Score: 207
Period size: 71 Copynumber: 2.0 Consensus size: 72
112914333 GCTTTATCAT
* *
112914343 ATAACTGGAGGCCTAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG
112914408 CCCTTTA
66 CCCTTTA
* * * *
112914415 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAA
112914478 GCCCTTT
65 GCCCTTT
112914485 TGCACTTCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 51 0.81
72 12 0.19
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (72 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG
CCCTTTA
Done.