Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 368 of 770
Found at i:112914486 original size:24 final size:24
Alignment explanation
Indices: 112914343--112914485 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
112914333 GCTTTATCAT
*
112914343 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
112914368 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
112914392 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
112914415 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
112914439 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
112914463 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
112914486 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:112914557 original size:9 final size:9
Alignment explanation
Indices: 112914543--112914599 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
112914533 ATCTCATGTG
112914543 CATATCATA
1 CATATCATA
*
112914552 CATATCATGTG
1 CATATCA--TA
112914563 CATATCATA
1 CATATCATA
* *
112914572 CATGTCATGTG
1 CATATCA--TA
112914583 CATATCATA
1 CATATCATA
112914592 CATATCAT
1 CATATCAT
112914600 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:112914559 original size:20 final size:20
Alignment explanation
Indices: 112914531--112914601 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
112914521 GCATTTATGA
*
112914531 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
112914551 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
112914571 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
112914591 ACATATCATGT
1 ACATATCATGT
112914602 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:112914566 original size:11 final size:11
Alignment explanation
Indices: 112914536--112914590 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
112914526 TATGAACATC
112914536 TCATGTGCATA
1 TCATGTGCATA
*
112914547 TCA--TACATA
1 TCATGTGCATA
112914556 TCATGTGCATA
1 TCATGTGCATA
* *
112914567 TCA--TACATG
1 TCATGTGCATA
112914576 TCATGTGCATA
1 TCATGTGCATA
112914587 TCAT
1 TCAT
112914591 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:112917369 original size:40 final size:39
Alignment explanation
Indices: 112917258--112917409 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
112917248 TATAACATGT
* ** *
112917258 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
112917298 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
112917338 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
112917378 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
112917410 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:112917392 original size:80 final size:80
Alignment explanation
Indices: 112917258--112917409 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
112917248 TATAACATGT
* *
112917258 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
112917323 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
112917338 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
112917401 CCCGGATAT
64 CCCGGATAT
112917410 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:112925275 original size:40 final size:40
Alignment explanation
Indices: 112925230--112925395 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
112925220 CGGAATATAA
*
112925230 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
112925270 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
112925310 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
112925348 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
112925388 CCGGATAT
1 CCGGATAT
112925396 CATTCAATTT
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
38 30 0.30
40 70 0.69
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:112925378 original size:78 final size:78
Alignment explanation
Indices: 112925246--112925394 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 78
112925236 ATAACCATGT
* *
112925246 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
112925311 CGGATAGCCACTA
66 CGGATAGCCACTA
* * ** * *
112925324 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
112925387 CCCGGATA
64 CCCGGATA
112925395 TCATTCAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 3 0.05
78 58 0.95
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATAGCCACTA
Found at i:112930194 original size:65 final size:68
Alignment explanation
Indices: 112930119--112930304 Score: 263
Period size: 71 Copynumber: 2.7 Consensus size: 68
112930109 TAGTACCACT
112930119 CATGCGACCTAGC-CGATTT-GC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTAGCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
112930180 CACG
65 CACG
*
112930184 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTAGC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
112930249 ATCACG
63 ATCACG
*
112930255 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTAGC-TT-ACGTAGCTCTCTTGTCTACATGG
112930305 GATACATCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 8
0.93 0.01 0.07
Matches are distributed among these distances:
65 13 0.12
66 4 0.04
67 2 0.02
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTAGCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:112930229 original size:71 final size:71
Alignment explanation
Indices: 112930141--112930304 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
112930131 CCGATTTGCT
112930141 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
112930206 CTTTCA
66 CTTTCA
112930212 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
112930277 CTTTCA
66 CTTTCA
112930283 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
112930305 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:112930342 original size:71 final size:70
Alignment explanation
Indices: 112930141--112930338 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
112930131 CCGATTTGCT
* * *
112930141 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
112930206 CTTTCA
65 CTTTCA
* * *
112930212 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
112930277 CTTTCA
65 CTTTCA
* *
112930283 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
112930339 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:112939674 original size:24 final size:24
Alignment explanation
Indices: 112939647--112939767 Score: 233
Period size: 24 Copynumber: 5.0 Consensus size: 24
112939637 GCTTATTATG
*
112939647 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112939671 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112939695 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112939719 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112939743 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112939767 A
1 A
112939768 CTTCTACCCC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 96 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:112947491 original size:24 final size:24
Alignment explanation
Indices: 112947464--112947610 Score: 285
Period size: 24 Copynumber: 6.1 Consensus size: 24
112947454 GCTTATTATG
*
112947464 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112947488 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112947512 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112947536 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112947560 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112947584 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
112947608 ATC
1 ATC
112947611 TTCTACCCCT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 122 1.00
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:112957458 original size:44 final size:44
Alignment explanation
Indices: 112957390--112957967 Score: 727
Period size: 44 Copynumber: 13.2 Consensus size: 44
112957380 CGGGATCAGT
* * * * *
112957390 AATCTGTTATTTTCGATCTGCTCTCTACCTATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * * * *
112957434 AATCTG-TCATTTTTGATCTACTCTCTGTCAACACAGAGATGCCA
1 AATCTGCT-ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
112957478 AATCTGCTATCTTCGATCTGCTCCCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * * *
112957522 AATCTG-TCATTTTCGGTCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCT-ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
112957566 AATCTGCTATCTTCGATTTGCTCCCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
112957610 AATCCGCTATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
112957654 AATCTACTATCCTT-GATCTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTAT-CTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
112957698 AATCTGCTATCTTCGATCTACTCTAC-GCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCT-CTGCCAATACAGAGACGCCA
* * * *
112957742 AATCTGCTATCTTTGATCTGCCCTCTGACAATATAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
112957786 AATCTGCTATCTTTGATCTGTTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
112957830 AATCTGCTATCTTCGATATGCTCT-TCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCT-GCCAATACAGAGACGCCA
* * * *
112957874 AGTCTGCTATCTTCGATCTGCTCCCTGTCAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
112957918 AATCTACTAT-TTCGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
112957961 AATCTGC
1 AATCTGC
112957968 AGGATTCACC
Statistics
Matches: 461, Mismatches: 63, Indels: 21
0.85 0.12 0.04
Matches are distributed among these distances:
43 42 0.09
44 412 0.89
45 7 0.02
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
Found at i:112969844 original size:131 final size:129
Alignment explanation
Indices: 112969529--112969859 Score: 314
Period size: 131 Copynumber: 2.5 Consensus size: 129
112969519 TAGAAAATAC
* ** *
112969529 GAGTGAAATTTCGAAGGGATCTTTGATTGTTTTGAGCAAATGAAAAAGCGAACCCAGCACGATAG
1 GAGTGAAATTTTGAA-GGAAATTTGATTGTTTTGAGCAAATGAAATAGC-AACCCAGCACGATAG
* *
112969594 GGC-TCGATTCTCAAAATGCCAAACATCGAACATCGCCTTCGTTTTGAAAAATTTTTAATAAACA
64 GGCATCGATTCTCAAAATACCAAACATCGAACATCACCTTCGTTTTGAAAAATTTTTAATAAACA
112969658 T
129 T
*** * *
112969659 GAGTGAAAACCTAAAGGAATATTTGATTGTTTTGAGCAAATAAGGAATCA-CAACCCAGCACGAT
1 GAGTGAAATTTTGAAGGAA-ATTTGATTGTTTTGAGCAAAT--GAAAT-AGCAACCCAGCACGAT
* * ** *
112969723 AGGGCAT-GATTCTCAAATTATCAAACA-CTGAGTATCACCTTTGTTTT-AAAAGATTTTTAGA-
62 AGGGCATCGATTCTCAAAATACCAAACATC-GAACATCACCTTCGTTTTGAAAA-ATTTTTA-AT
*
112969784 AGACAT
124 AAACAT
* * * * *
112969790 GAGTGAAATTTTGAAGTGAAATTCGATTATTTTGAGCAAATGCTAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTTGAAG-GAAATTTGATTGTTTTGAGCAAATG--AAATAGCAACCCAGCACGATA
112969855 GGGCA
63 GGGCA
112969860 CTATTTCATG
Statistics
Matches: 162, Mismatches: 27, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
129 4 0.02
130 35 0.22
131 113 0.70
132 9 0.06
133 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (129 bp):
GAGTGAAATTTTGAAGGAAATTTGATTGTTTTGAGCAAATGAAATAGCAACCCAGCACGATAGGG
CATCGATTCTCAAAATACCAAACATCGAACATCACCTTCGTTTTGAAAAATTTTTAATAAACAT
Found at i:112970704 original size:2 final size:2
Alignment explanation
Indices: 112970699--112970726 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
112970689 AAAACATGCT
112970699 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
112970727 AACTATATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:112985526 original size:40 final size:40
Alignment explanation
Indices: 112985324--112985571 Score: 275
Period size: 40 Copynumber: 6.2 Consensus size: 40
112985314 TGAATGATAC
* * * *
112985324 CCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGATTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
112985364 CCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
112985404 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
112985444 CCGGGCTAAGACCCGAAGGCATTCGTACGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
112985484 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
112985524 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
112985564 CC-GGCTAA
1 CCGGGCTAA
112985572 ATTCCGAAGA
Statistics
Matches: 179, Mismatches: 27, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
39 6 0.03
40 171 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:112993629 original size:40 final size:40
Alignment explanation
Indices: 112993535--112993790 Score: 311
Period size: 40 Copynumber: 6.5 Consensus size: 40
112993525 TGAATGATAC
112993535 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
112993574 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
112993614 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
* ** *
112993654 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
* * * * ** *
112993694 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
* * * * * *
112993734 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
* *
112993774 CC-GGCTAAATTCCGAAG
1 CCGGGCTAAGTCCCGAAG
112993791 AAGCTCGGTT
Statistics
Matches: 191, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 51 0.27
40 138 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:112999355 original size:124 final size:124
Alignment explanation
Indices: 112999133--112999357 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
112999123 GAATTATGTG
* * * * * * *
112999133 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
112999198 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
112999257 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
112999322 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
112999358 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:112999479 original size:40 final size:40
Alignment explanation
Indices: 112999352--112999481 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
112999342 TTGCTGGAAA
* * *
112999352 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
112999392 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
112999432 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
112999472 TTATATCCGG
1 TTATATCCGG
112999482 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:113014955 original size:24 final size:24
Alignment explanation
Indices: 113014925--113015191 Score: 471
Period size: 24 Copynumber: 11.1 Consensus size: 24
113014915 GAATGTGACT
* *
113014925 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
113014949 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
113014973 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
113014997 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
113015021 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
113015045 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
113015069 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
113015093 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
113015117 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
113015141 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
113015165 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
113015189 ATA
1 ATA
113015192 TGGTCTTTGC
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 237 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:113021691 original size:40 final size:40
Alignment explanation
Indices: 113021606--113021756 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
113021596 AATTGAATGA
* * *
113021606 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
113021646 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
113021687 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
113021726 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
113021757 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:113021770 original size:40 final size:40
Alignment explanation
Indices: 113021643--113021772 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
113021633 ATGCTGGAAA
* * * *
113021643 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
113021683 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
113021723 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
113021763 TTATATCCGG
1 TTATATCCGG
113021773 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:113029675 original size:40 final size:40
Alignment explanation
Indices: 113029590--113029740 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
113029580 AATTGAATGA
* * *
113029590 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
113029630 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
113029671 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
113029710 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
113029741 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:113029754 original size:40 final size:40
Alignment explanation
Indices: 113029627--113029756 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
113029617 ATGCTGGAAA
* * * *
113029627 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
113029667 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
113029707 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
113029747 TTATATCCGG
1 TTATATCCGG
113029757 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:113035650 original size:37 final size:37
Alignment explanation
Indices: 113035600--113035690 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
113035590 TTATTACGAA
113035600 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
113035637 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
113035674 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
113035691 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:113035785 original size:48 final size:48
Alignment explanation
Indices: 113035730--113035929 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
113035720 TGTTACAACA
*
113035730 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
113035778 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
113035826 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
113035874 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
113035922 TTCACATT
1 TTCACATT
113035930 CATCACATCG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:113036048 original size:49 final size:49
Alignment explanation
Indices: 113035922--113036211 Score: 451
Period size: 49 Copynumber: 5.9 Consensus size: 49
113035912 ACACATATGT
*
113035922 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATATGT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC-----C
113035976 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
*
113036025 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
*
113036074 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC-TC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
* * *
113036120 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
*
113036169 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
113036212 CATCTCCTAC
Statistics
Matches: 224, Mismatches: 9, Indels: 11
0.92 0.04 0.05
Matches are distributed among these distances:
46 36 0.16
47 8 0.04
48 7 0.03
49 125 0.56
54 48 0.21
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACC
Found at i:113036163 original size:95 final size:96
Alignment explanation
Indices: 113035922--113036213 Score: 469
Period size: 95 Copynumber: 3.0 Consensus size: 96
113035912 ACACATATGT
*
113035922 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATATGTTTCACATTCAT
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC-----TTTCACATTCAT
113035987 CACATCGGCCATTAGGCCTTATCACATATATATACACC
61 CACATCGGCCATTAGGCCTTATCAC--ATATATACACC
*
113036025 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACAT
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
113036090 CGGCCATTAGGCCTTATCACATATATAC-TC
66 CGGCCATTAGGCCTTATCACATATATACACC
*
113036120 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAT
1 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
113036185 TGGCCATTAGGCCTTATCACATATATACA
66 CGGCCATTAGGCCTTATCACATATATACA
113036214 TCTCCTACAT
Statistics
Matches: 182, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
95 91 0.50
96 8 0.04
98 36 0.20
103 47 0.26
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACC
Found at i:113036195 original size:144 final size:148
Alignment explanation
Indices: 113035922--113036211 Score: 480
Period size: 144 Copynumber: 2.0 Consensus size: 148
113035912 ACACATATGT
*
113035922 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATATGTTTCACATTCAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATA-AC--ATGCTTCACATTCAT
113035987 CACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGG
62 CACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGG
113036052 CCTTATCACATATATATACACC
127 CCTTATCACATATATATACACC
113036074 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATAT-AC-T-CTTCACATTCATCACA
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAACATGCTTCACATTCATCACA
* * *
113036135 TTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTT
113036200 ATCACATATATA
131 ATCACATATATA
113036212 CATCTCCTAC
Statistics
Matches: 134, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
144 89 0.66
145 1 0.01
148 2 0.01
150 6 0.04
152 36 0.27
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (148 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAACATGCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTT
ATCACATATATATACACC
Found at i:113040396 original size:49 final size:49
Alignment explanation
Indices: 113040339--113040722 Score: 652
Period size: 49 Copynumber: 7.9 Consensus size: 49
113040329 ATGTATGAGA
113040339 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
113040388 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
113040437 TATATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAA--G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
113040484 TGTATATATGTGATAAGGCCTAATGTCTGATG-GATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
113040532 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
113040581 TGTATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
113040630 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
113040677 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
113040723 TATATGTGTG
Statistics
Matches: 316, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 13 0.04
47 75 0.24
48 31 0.10
49 197 0.62
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:113040600 original size:144 final size:145
Alignment explanation
Indices: 113040339--113040722 Score: 657
Period size: 144 Copynumber: 2.7 Consensus size: 145
113040329 ATGTATGAGA
113040339 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
*
113040404 GGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACG
113040469 GGATGAATGTGAAAG
131 GGATGAATGTGAAAG
* *
113040484 TGTATATATGTGATAAGGCCTAATGTCTGATG-GATGAATGTGAAAGTGTGTATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
* * *
113040548 GGCCTAATGGCCGATGTGATGAATTTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGACG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACG
*
113040613 TGATGAATGTGAAAG
131 GGATGAATGTGAAAG
*
113040628 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGAT
1 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGAT
113040691 AAGGCCTAATGGCCGATGTGATGAATGTGAAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAA
113040723 TATATGTGTG
Statistics
Matches: 225, Mismatches: 11, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
144 109 0.48
145 76 0.34
146 27 0.12
147 13 0.06
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACG
GGATGAATGTGAAAG
Found at i:113040669 original size:193 final size:194
Alignment explanation
Indices: 113040339--113040722 Score: 698
Period size: 193 Copynumber: 2.0 Consensus size: 194
113040329 ATGTATGAGA
113040339 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
* *
113040404 GGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCAATG
* *
113040469 GGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGTCTGATG-GATGAATGTGAAAGTG
131 GGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
113040532 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTGTATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
*
113040597 GGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
66 GGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCAATG
*
113040662 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
131 GGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
113040723 TATATGTGTG
Statistics
Matches: 183, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
193 170 0.93
194 13 0.07
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (194 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
GGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCAATG
GGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:113044669 original size:142 final size:142
Alignment explanation
Indices: 113044413--113044678 Score: 354
Period size: 142 Copynumber: 1.9 Consensus size: 142
113044403 TGTTTGTCAG
* * * * *
113044413 TGTAAGACCTATCTGGTACATGGCACCGACACAGATAAGTGAGAGCTAGTGTAAGACCTGTTTGG
1 TGTAAGACCTATCTGGAACACGGCACCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTAG
* * * * *
113044478 GACATGGCATCAGCCTCAATATATGCAAGCTAGTGTAAGACTTGTCTAGGGCATGGCATCAGCTT
66 AACATGGCATCAGCCTCAATACATGCAAGCTAATGTAAGACCTGTCTAGGACATGGCATCAGCTT
113044543 GAGGTGTGTTAA
131 GAGGTGTGTTAA
* * *
113044555 TGTAAGACCTGTCTGGAATACGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTAG
1 TGTAAGACCTATCTGGAACACGGCACCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTAG
* * * * *
113044620 AACATGGCATCGGCCTCGATGCATGGAAG-TCAATGTAAGGCCTGTCTAGGACATGGCAT
66 AACATGGCATCAGCCTCAATACATGCAAGCT-AATGTAAGACCTGTCTAGGACATGGCAT
113044679 TGATTTAGAT
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
141 1 0.01
142 104 0.99
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (142 bp):
TGTAAGACCTATCTGGAACACGGCACCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTAG
AACATGGCATCAGCCTCAATACATGCAAGCTAATGTAAGACCTGTCTAGGACATGGCATCAGCTT
GAGGTGTGTTAA
Found at i:113052453 original size:49 final size:47
Alignment explanation
Indices: 113052381--113052485 Score: 120
Period size: 49 Copynumber: 2.2 Consensus size: 47
113052371 GGTGTGTCAA
* * *
113052381 TGTAAGACCTGTCTGGGACATGGCATCAACACAAATAAGTAAGAGCCAG
1 TGTAAGACCTGCCTAGGACATGGCACCAACACAAAT--GTAAGAGCCAG
* * ** *
113052430 TGTAAGACCTGCCTAGGATATGGCACCGACTTAGATGTAAGAGCCAG
1 TGTAAGACCTGCCTAGGACATGGCACCAACACAAATGTAAGAGCCAG
113052477 TGTAAGACC
1 TGTAAGACC
113052486 ATGTTTGGAA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 20 0.42
49 28 0.58
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.20
Consensus pattern (47 bp):
TGTAAGACCTGCCTAGGACATGGCACCAACACAAATGTAAGAGCCAG
Found at i:113061628 original size:40 final size:40
Alignment explanation
Indices: 113061569--113061699 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
113061559 CGGGACTTTA
* * *
113061569 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
113061609 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
113061649 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
113061689 CCCGGATATAA
1 CCCGGATATAA
113061700 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:113061732 original size:39 final size:40
Alignment explanation
Indices: 113061586--113061736 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
113061576 ATCACGATTT
* * * *
113061586 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
113061626 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
113061666 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
113061705 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
113061737 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:113069660 original size:40 final size:40
Alignment explanation
Indices: 113069601--113069769 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
113069591 CGGGACTTTA
* * *
113069601 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
113069641 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
113069681 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
113069721 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
113069761 CCCGGATAT
1 CCCGGATAT
113069770 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:113074675 original size:40 final size:39
Alignment explanation
Indices: 113074630--113074837 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
113074620 CGGAATACAA
*
113074630 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
113074670 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
113074710 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
113074750 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
113074790 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
113074830 CCGGATAT
1 CCGGATAT
113074838 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:113074770 original size:80 final size:80
Alignment explanation
Indices: 113074630--113074836 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
113074620 CGGAATACAA
* * *
113074630 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
113074694 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
113074710 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
113074774 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
113074790 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
113074837 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:113083761 original size:29 final size:28
Alignment explanation
Indices: 113083718--113083820 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
113083708 GTGACGAGAT
* *
113083718 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
113083747 CGGCACTAAGTGTGCGAG-TATGGACTATA
1 TGGCACTAAGTGTGCGAGCT-T-GAATATA
* *
113083776 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
113083805 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
113083821 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 4 0.07
29 55 0.90
30 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:113083827 original size:29 final size:28
Alignment explanation
Indices: 113083718--113083849 Score: 104
Period size: 29 Copynumber: 4.6 Consensus size: 28
113083708 GTGACGAGAT
* * *
113083718 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGATTG-AATATA
* * *
113083747 CGGCACTAAGTGTGCGAGTATGGACTATA
1 TGGCACTAAGTGTGCGAG-ATTGAATATA
* * *
113083776 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGATTGAAT-ATA
* *
113083805 TGGCACTAAGTGTGCGTGATTGAGTAT-
1 TGGCACTAAGTGTGCGAGATTGAATATA
* *
113083832 TAAGCACTATGTGTGCGA
1 T-GGCACTAAGTGTGCGA
113083850 ACTCTACACA
Statistics
Matches: 81, Mismatches: 19, Indels: 7
0.76 0.18 0.07
Matches are distributed among these distances:
27 1 0.01
28 19 0.23
29 59 0.73
30 2 0.02
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGATTGAATATA
Found at i:113092094 original size:40 final size:40
Alignment explanation
Indices: 113092050--113092233 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
113092040 GCTACTCGTT
* *
113092050 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
113092090 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
113092130 TAAATGCCTTC-GGATCTTAG-TCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
113092169 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
113092210 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
113092234 CATCATTCGA
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 56 0.44
40 64 0.50
41 7 0.06
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:113092166 original size:39 final size:39
Alignment explanation
Indices: 113092078--113092200 Score: 167
Period size: 39 Copynumber: 3.1 Consensus size: 39
113092068 AGCCCGGTTA
* **
113092078 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCGGATT
*
113092118 TAGTAACTCGCATAAATGCCTTCGGATCTTAGTCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
*
113092157 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CGGATT
113092197 TAGT
1 TAGT
113092201 CACTTAGCAC
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 42 0.56
40 33 0.44
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
Found at i:113100366 original size:40 final size:40
Alignment explanation
Indices: 113100288--113100435 Score: 151
Period size: 40 Copynumber: 3.7 Consensus size: 40
113100278 GGTTATAGTA
* **
113100288 GCACAAATGCCTTCGGGA-CTTA-ACCCTATTTAGTAACTC
1 GCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTC
*
113100327 GCATAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTC
* * * * *
113100367 GCACGAATGCCTTCGGATATTAGTCCGGATATAGTCACTTA
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TC
*
113100408 GCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 GCACAAATGCCTTC-GGATCTTAGTCCGGA
113100436 CATCAATTGA
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
38 3 0.03
39 17 0.18
40 62 0.67
41 10 0.11
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTC
Found at i:113103956 original size:39 final size:39
Alignment explanation
Indices: 113103912--113104068 Score: 217
Period size: 39 Copynumber: 4.0 Consensus size: 39
113103902 GATGTGTATG
*
113103912 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
113103951 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
** *
113103989 AATGGTGCGAGCTATGATATCCGAGCTAAGCCCGAAGGCA
1 AAT-GTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
* * * *
113104029 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTATGATATCCGGGCTAAG-CCCGAAGGCA
113104069 TTTGTACGGG
Statistics
Matches: 106, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 3 0.03
39 91 0.86
40 12 0.11
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (39 bp):
AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
Found at i:113109259 original size:29 final size:29
Alignment explanation
Indices: 113109226--113109299 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
113109216 CCTTCGAGCT
113109226 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
113109255 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
113109284 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
113109300 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:113109260 original size:58 final size:58
Alignment explanation
Indices: 113109167--113109299 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
113109157 ATACTCGATT
* * * * *
113109167 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
113109225 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
113109283 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
113109300 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:113117114 original size:29 final size:28
Alignment explanation
Indices: 113117044--113117118 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
113117034 ATACTCGATT
* *
113117044 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
113117072 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
113117101 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
113117119 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:113117135 original size:29 final size:29
Alignment explanation
Indices: 113117102--113117175 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
113117092 CCTTCGAGCT
113117102 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
113117131 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
113117160 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
113117176 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:113122840 original size:39 final size:39
Alignment explanation
Indices: 113122790--113122946 Score: 199
Period size: 39 Copynumber: 4.0 Consensus size: 39
113122780 GATGTGTATG
* *
113122790 AATGTACGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
*
113122829 AATGTGTGAATTATGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
** *
113122867 AATGGTGCGAGCTATGATATCCGGGCTAAGCCCAAAGGCA
1 AAT-GTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
* * * *
113122907 ATTGTGCGAGTTGTGATATCCGGGATAAGTCCCGAAGGCA
1 AATGTGCGAATTATGATATCCGGGCTAAG-CCCGAAGGCA
113122947 TTTGTACGGG
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 3 0.03
39 89 0.86
40 11 0.11
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (39 bp):
AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
Found at i:113125882 original size:79 final size:81
Alignment explanation
Indices: 113125773--113125954 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
113125763 TACTCGTTCA
* * *
113125773 AATGCCTTCGGGACATAGCCC-GGTTATAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
113125836 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
113125853 AATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
113125916 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
* *
113125932 AAAGCCTTTGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
113125955 ACATCATTCG
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 29 0.33
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:113125955 original size:40 final size:40
Alignment explanation
Indices: 113125752--113125955 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
113125742 CGGAATTTAA
** *
113125752 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
113125792 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
113125832 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
113125871 CCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
113125911 CCGGATATAGTCACTTAGCACAAA-GCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
113125951 CCGGA
1 CCGGA
113125956 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 93 0.66
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:113140469 original size:36 final size:36
Alignment explanation
Indices: 113140428--113140501 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
113140418 ATTTCATGTA
113140428 AACATAGGAATGGGTCGAACTCGGATCAATCAAAGC
1 AACATAGGAATGGGTCGAACTCGGATCAATCAAAGC
113140464 AACATAGGAATGGGTCGAACTCGGATCAATCAAAGC
1 AACATAGGAATGGGTCGAACTCGGATCAATCAAAGC
113140500 AA
1 AA
113140502 TAACATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (36 bp):
AACATAGGAATGGGTCGAACTCGGATCAATCAAAGC
Found at i:113143446 original size:40 final size:40
Alignment explanation
Indices: 113143347--113143537 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
113143337 TGGATGATAA
* * * * **
113143347 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
113143387 TCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
113143426 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
113143466 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
113143506 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
113143538 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 32 0.24
40 102 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:113153876 original size:29 final size:29
Alignment explanation
Indices: 113153864--113153947 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
113153854 TTCATATGGC
*
113153864 CCCTTTAGGCCCAAATCACCTGT-ATATGG
1 CCCTTTAGGCCCAAATCACAT-TCATATGG
* *
113153893 -TCTATTAGGCCCAAATCACATTTATATGG
1 CCCT-TTAGGCCCAAATCACATTCATATGG
* *
113153922 CCCGTTAGGCCC-AGTCACATTCATAT
1 CCCTTTAGGCCCAAATCACATTCATAT
113153948 TCATTCTCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
28 15 0.33
29 30 0.65
30 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
CCCTTTAGGCCCAAATCACATTCATATGG
Found at i:113159723 original size:68 final size:66
Alignment explanation
Indices: 113159648--113159823 Score: 171
Period size: 67 Copynumber: 2.6 Consensus size: 66
113159638 CATCATGTGT
* * *
113159648 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCA
113159711 TGTAG
62 TGTAG
** * * *
113159716 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCA-GTGAAGGACACCATGT
113159781 AG
65 AG
* * *
113159783 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTG
1 ACAAGAGAGCTACGACATATA-TGTAGCTAGGTCGCATGGGTG
113159824 GTACTAAGTG
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
64 24 0.26
65 3 0.03
66 19 0.21
67 31 0.34
68 15 0.16
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCATGTA
G
Found at i:113159753 original size:64 final size:64
Alignment explanation
Indices: 113159672--113159855 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
113159662 AGACATTATG
* * *
113159672 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
113159736 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
113159801 AA
63 AA
* * *
113159803 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
113159856 CGAACTTATG
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:113161538 original size:8 final size:8
Alignment explanation
Indices: 113161505--113161551 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
113161495 ACTTTTGACT
113161505 TTTCGGCA
1 TTTCGGCA
** *
113161513 TTTCAACT
1 TTTCGGCA
*
113161521 TTTTGGCA
1 TTTCGGCA
113161529 TTTCGGCA
1 TTTCGGCA
113161537 TTTCGGCA
1 TTTCGGCA
113161545 TTTCGGC
1 TTTCGGC
113161552 TTTTACCTAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (8 bp):
TTTCGGCA
Found at i:113163270 original size:79 final size:80
Alignment explanation
Indices: 113163127--113163334 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
113163117 ACCTTCGGAG
* * ** * * * *
113163127 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
113163191 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
113163206 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
113163268 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
113163285 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
113163335 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:113163279 original size:40 final size:40
Alignment explanation
Indices: 113163227--113163334 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
113163217 TATCACGATT
** *
113163227 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
113163267 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
113163307 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
113163335 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:113175612 original size:27 final size:28
Alignment explanation
Indices: 113175555--113175624 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
113175545 AAATTTGTAC
**
113175555 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
113175583 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
113175610 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
113175625 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:113179628 original size:20 final size:20
Alignment explanation
Indices: 113179577--113179628 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
113179567 TCATTTCTCC
*
113179577 CACGCCCGTGTCCAATCCAA
1 CACGCCCATGTCCAATCCAA
* *
113179597 CATG-CCAGTGTCCAATCTAA
1 CACGCCCA-TGTCCAATCCAA
113179617 CACGCCCATGTC
1 CACGCCCATGTC
113179629 AATTAGTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.25, C:0.40, G:0.15, T:0.19
Consensus pattern (20 bp):
CACGCCCATGTCCAATCCAA
Found at i:113181328 original size:20 final size:20
Alignment explanation
Indices: 113181300--113181351 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
113181290 TCTTTTCTCC
*
113181300 CACGCCCGTGTCCAATCTAA
1 CACGCCCGTGTCCAATCCAA
*
113181320 CATGCCCGTGTCCAATCCAA
1 CACGCCCGTGTCCAATCCAA
*
113181340 CACACCCGTGTC
1 CACGCCCGTGTC
113181352 AATTAGTCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.19
Consensus pattern (20 bp):
CACGCCCGTGTCCAATCCAA
Found at i:113187346 original size:5 final size:6
Alignment explanation
Indices: 113187328--113187362 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
113187318 GTAATTTAAG
113187328 AAAAATT AAAAAT -AAAAT AAAAAT AAAAAT AAAAA
1 AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
113187363 AATGGCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:113187354 original size:17 final size:18
Alignment explanation
Indices: 113187328--113187361 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
113187318 GTAATTTAAG
113187328 AAAAATTAAAAATAAAAT
1 AAAAATTAAAAATAAAAT
113187346 AAAAA-TAAAAATAAAA
1 AAAAATTAAAAATAAAA
113187362 AAATGGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAAATTAAAAATAAAAT
Found at i:113196593 original size:93 final size:93
Alignment explanation
Indices: 113196481--113196652 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
113196471 CGCCCATAAG
* *
113196481 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
113196546 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
113196574 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
113196639 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
113196653 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:113196649 original size:46 final size:46
Alignment explanation
Indices: 113196474--113196649 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
113196464 TGTAACCCGC
* * *
113196474 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
113196520 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
113196570 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
113196613 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
113196650 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:113204145 original size:93 final size:93
Alignment explanation
Indices: 113204033--113204204 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
113204023 CGCCCATAAG
* *
113204033 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
113204098 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
113204126 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
113204191 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
113204205 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:113204201 original size:46 final size:46
Alignment explanation
Indices: 113204026--113204201 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
113204016 TGTAACCCGC
* * *
113204026 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
113204072 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
113204122 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
113204165 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
113204202 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:113206986 original size:14 final size:15
Alignment explanation
Indices: 113206967--113206996 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
113206957 GTTTATTATA
113206967 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
113206981 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
113206996 T
1 T
113206997 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:113208945 original size:43 final size:44
Alignment explanation
Indices: 113208881--113209009 Score: 158
Period size: 43 Copynumber: 3.0 Consensus size: 44
113208871 GTTGGTTAAT
* * *
113208881 AATATTATCAGGC-TTCGGGCCTAGCAGGCTCTAATGCCGGTGA
1 AATAATATCGGGCTTTCGGGCCTAGCAGGCTATAATGCCGGTGA
*
113208924 GATAATATCGGG-TTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** *
113208967 AATGATATCGGGCTTT-AAGCCTAGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTTCGGGCCTAGCAGGCTATAATGCCGGTGA
113209009 A
1 A
113209010 TGAGTTTAGA
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 12 0.16
43 60 0.80
44 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
AATAATATCGGGCTTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:113209085 original size:40 final size:41
Alignment explanation
Indices: 113208899--113209089 Score: 147
Period size: 43 Copynumber: 4.6 Consensus size: 41
113208889 CAGGCTTCGG
* ***
113208899 GCCTAGCAGGCTCTAATGCCGGTGAGAT-AATATCGGGTTTCGG
1 GCCTAGCAGGCT-AAATGCCGGTGA-ATGAAT-TCGGGTTTAAA
113208942 GCCTAGCAGGCTATAATGCCGGTGAAATG-ATATCGGGCTTT-AA
1 GCCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGG-TTTAAA
* * ** **
113208985 GCCTAGCAGGCGAAATGCCGGTGAATGAGTTTAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGTTTAAA
* *** *
113209026 GTCTAGCAGGCTTCGTGCCGATG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGTTTAAA
*
113209066 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCGGTGA
113209090 TTTGATAAAA
Statistics
Matches: 115, Mismatches: 26, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
40 31 0.27
41 25 0.22
42 11 0.10
43 44 0.38
44 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGTTTAAA
Found at i:113212950 original size:40 final size:40
Alignment explanation
Indices: 113212860--113213008 Score: 160
Period size: 40 Copynumber: 3.7 Consensus size: 40
113212850 ATAATCCACA
* * * * *
113212860 AGCACAATTGCCTTCGGGTCTTAACCCAGATTTGGTA-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT-GAACACT
*
113212900 TGCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAAC-ACT
* *
113212940 CA-CACGAATGCCTTCGGGTCTTAGCCCGGATATGATCACT
1 -AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACACT
* *
113212980 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
113213009 GTATCATTCA
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 88 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACACT
Found at i:113218989 original size:31 final size:31
Alignment explanation
Indices: 113218947--113219008 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
113218937 AAATTTGAAG
* *
113218947 CTAGATTGAGGAAAAGAAAAGGTGTCAGATT
1 CTAGATCGAGGAAAAGAAAAGGTCTCAGATT
113218978 CTAGATCGAGGAAAAGAAAAGGTCTCAGATT
1 CTAGATCGAGGAAAAGAAAAGGTCTCAGATT
113219009 AGTAGGCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.27, T:0.21
Consensus pattern (31 bp):
CTAGATCGAGGAAAAGAAAAGGTCTCAGATT
Found at i:113219248 original size:2 final size:2
Alignment explanation
Indices: 113219241--113219274 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
113219231 AAATAACGTG
113219241 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
113219275 AATCACCTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:113220813 original size:2 final size:2
Alignment explanation
Indices: 113220758--113220799 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
113220748 TATATACGTG
113220758 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
113220800 ATTGCATTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:113228547 original size:39 final size:39
Alignment explanation
Indices: 113228493--113228645 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
113228483 GAATGTTCGA
* *
113228493 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
113228532 GTGATATTCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
113228571 ATGATATTCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
113228610 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
113228646 GGTTACCATA
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.83
40 17 0.17
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:113228661 original size:40 final size:40
Alignment explanation
Indices: 113228500--113228675 Score: 151
Period size: 39 Copynumber: 4.5 Consensus size: 40
113228490 CGAGTGATAT
* * *** *
113228500 CCGGGCTAAG-CCCGAAGGCAATTGTGTGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
113228539 TCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* *** *
113228578 TCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
113228617 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
113228657 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
113228676 TGTTTTGAAC
Statistics
Matches: 119, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 79 0.66
40 40 0.34
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:113231708 original size:2 final size:2
Alignment explanation
Indices: 113231656--113231693 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
113231646 TGTATATACG
113231656 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
113231694 AATTGCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:113239131 original size:18 final size:17
Alignment explanation
Indices: 113239096--113239137 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
113239086 ATACATACAG
113239096 TAAT-ATTTTCTAATAA
1 TAATAATTTTCTAATAA
*
113239112 TAATAATTTATCTCATAA
1 TAATAATTT-TCTAATAA
*
113239130 TACTAATT
1 TAATAATT
113239138 AAAATTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 4 0.18
17 4 0.18
18 14 0.64
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATAATTTTCTAATAA
Found at i:113239414 original size:46 final size:47
Alignment explanation
Indices: 113239358--113239468 Score: 145
Period size: 46 Copynumber: 2.4 Consensus size: 47
113239348 TTTTGCTTCG
* *
113239358 GGCCATGGTATAGGTATTCAGAGA-AGAGTTACCTTGATTTGACTAT-
1 GGCCATGGTATAGGTACTCAGAGATA-AGTTACCTTAATTTGACTATA
* * *
113239404 GGCCATGGTATAGGTACTCTGGGATAAGTTACCTTAATTTGGCTATA
1 GGCCATGGTATAGGTACTCAGAGATAAGTTACCTTAATTTGACTATA
*
113239451 GGCCATGGTATTGGTACT
1 GGCCATGGTATAGGTACT
113239469 TATTGATTGA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 39 0.68
47 18 0.32
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (47 bp):
GGCCATGGTATAGGTACTCAGAGATAAGTTACCTTAATTTGACTATA
Found at i:113245764 original size:39 final size:39
Alignment explanation
Indices: 113245710--113245861 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
113245700 GAATGTTCGA
*
113245710 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
113245749 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
113245788 ATGATATCCGGGCTAAGCCCG-AGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
113245826 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
113245862 GGTTACCATA
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 31 0.30
39 61 0.59
40 12 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:113245877 original size:40 final size:39
Alignment explanation
Indices: 113245711--113245891 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
113245701 AATGTTCGAG
* *
113245711 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
113245750 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
113245789 TGATATCCGGGCTAAGCCCG-AGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
113245827 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
113245867 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
113245892 TGTTTTGAAC
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 31 0.25
39 60 0.48
40 35 0.28
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:113256057 original size:40 final size:40
Alignment explanation
Indices: 113256002--113256171 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
113255992 AACATTGGAA
113256002 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
113256042 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
113256082 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
113256121 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
113256162 CTATATCCGG
1 ATATATCCGG
113256172 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:113259149 original size:40 final size:40
Alignment explanation
Indices: 113259053--113259243 Score: 238
Period size: 40 Copynumber: 4.8 Consensus size: 40
113259043 CGAATGGTGT
* * * * * *
113259053 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
113259094 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
113259134 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
113259174 TCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
113259214 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
113259244 ATCACTATAA
Statistics
Matches: 131, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 107 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:113259258 original size:40 final size:39
Alignment explanation
Indices: 113259053--113259285 Score: 202
Period size: 40 Copynumber: 5.8 Consensus size: 39
113259043 CGAATGGTGT
** * *
113259053 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
113259093 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
113259134 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* *
113259174 TCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
113259213 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
113259254 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
113259286 CGCTATATCC
Statistics
Matches: 165, Mismatches: 19, Indels: 17
0.82 0.09 0.08
Matches are distributed among these distances:
39 8 0.05
40 123 0.75
41 34 0.21
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:113259267 original size:80 final size:80
Alignment explanation
Indices: 113259052--113259285 Score: 258
Period size: 80 Copynumber: 2.9 Consensus size: 80
113259042 TCGAATGGTG
* * *
113259052 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAAT-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTCAATGTCCCGAAGGCAT
*
113259116 TTGTGCGAGTTACCAAA
64 TCGTGCGAGTTACCAAA
* * * * * * *
113259133 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAATCGGGTTAA-GTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAATGTCCCGAAGGCATT
*
113259197 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACCAAA
* * * *
113259213 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTCAATGTCCCGAAGGCATT
*
113259277 CGAGCGAGT
65 CGTGCGAGT
113259286 CGCTATATCC
Statistics
Matches: 126, Mismatches: 23, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
79 4 0.03
80 91 0.72
81 31 0.25
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAATGTCCCGAAGGCATTC
GTGCGAGTTACCAAA
Found at i:113265654 original size:19 final size:20
Alignment explanation
Indices: 113265625--113265667 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
113265615 ATGTTTAATT
113265625 TTGATTGAATTGTT-TATGAA
1 TTGATTGAATT-TTATATGAA
*
113265645 TTGATT-AATTTTATGTGAA
1 TTGATTGAATTTTATATGAA
113265664 TTGA
1 TTGA
113265668 ATGTTTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.62
20 6 0.29
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (20 bp):
TTGATTGAATTTTATATGAA
Found at i:113271754 original size:40 final size:40
Alignment explanation
Indices: 113271697--113271880 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
113271687 TCGAATGATG
* *
113271697 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
113271737 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
113271777 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
113271815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
113271856 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
113271881 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 19 0.15
40 74 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:113271832 original size:78 final size:80
Alignment explanation
Indices: 113271697--113271878 Score: 255
Period size: 78 Copynumber: 2.3 Consensus size: 80
113271687 TCGAATGATG
*
113271697 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
113271762 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
113271776 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
113271838 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
113271855 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
113271879 TGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.57
79 28 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:113274759 original size:47 final size:44
Alignment explanation
Indices: 113274691--113274797 Score: 108
Period size: 47 Copynumber: 2.3 Consensus size: 44
113274681 CCTAGACACG
* *
113274691 GTCTTACACTGGCCCATATCTC-AAGTCGAAGCCATGCCCCAAACAT
1 GTCTTACACTGG-CTATATCTCGAA-CCGAAG-CATGCCCCAAACAT
* * *
113274737 GGTTTTACACTGGCTATCATCTCGTAACCGACGCATGTCCCAAACAT
1 -GTCTTACACTGGCTAT-ATCTCG-AACCGAAGCATGCCCCAAACAT
113274784 GTCTTACACTGGCT
1 GTCTTACACTGGCT
113274798 TGCGTCCCAA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
46 16 0.31
47 29 0.57
48 4 0.08
49 2 0.04
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (44 bp):
GTCTTACACTGGCTATATCTCGAACCGAAGCATGCCCCAAACAT
Found at i:113285321 original size:17 final size:18
Alignment explanation
Indices: 113285280--113285321 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
113285270 GCATTTGTCA
113285280 AAATATATAAATTTCATC
1 AAATATATAAATTTCATC
* * *
113285298 TAATATAT-ATTTTTATC
1 AAATATATAAATTTCATC
113285315 AAATATA
1 AAATATA
113285322 GATATTATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATAAATTTCATC
Found at i:113287879 original size:2 final size:2
Alignment explanation
Indices: 113287872--113287907 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
113287862 GTTAGTCCCA
113287872 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113287908 TTTGTTTTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113291772 original size:18 final size:19
Alignment explanation
Indices: 113291728--113291772 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
113291718 ATATTCTTCA
113291728 AAATTTTATATAAATTTTG
1 AAATTTTATATAAATTTTG
* *
113291747 GAATTTT-TATAAATATTTT
1 AAATTTTATATAAAT-TTTG
113291766 AAATTTT
1 AAATTTT
113291773 TTTTAGAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
AAATTTTATATAAATTTTG
Found at i:113291773 original size:20 final size:19
Alignment explanation
Indices: 113291728--113291774 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
113291718 ATATTCTTCA
*
113291728 AAATTTTATATAAATTTTG
1 AAATTTTTTATAAATTTTG
* *
113291747 GAA-TTTTTATAAATATTTT
1 AAATTTTTTATAAAT-TTTG
113291766 AAATTTTTT
1 AAATTTTTT
113291775 TTAGAGACCA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 10 0.45
19 7 0.32
20 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
AAATTTTTTATAAATTTTG
Found at i:113292030 original size:9 final size:9
Alignment explanation
Indices: 113292016--113292046 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
113292006 TAGTTTACCT
113292016 ATTCGTGTA
1 ATTCGTGTA
113292025 ATTCGTGTA
1 ATTCGTGTA
113292034 ATTCGTGTA
1 ATTCGTGTA
113292043 ATTC
1 ATTC
113292047 TTCATCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (9 bp):
ATTCGTGTA
Found at i:113295018 original size:40 final size:40
Alignment explanation
Indices: 113294940--113295163 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
113294930 ACCCAAGTAT
* *
113294940 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
113294979 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
113295019 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
113295059 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
113295102 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
113295142 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
113295164 CATCCGAATA
Statistics
Matches: 165, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 12 0.07
40 116 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:113295136 original size:83 final size:80
Alignment explanation
Indices: 113294940--113295163 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
113294930 ACCCAAGTAT
* * * *
113294940 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
113295004 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
113295019 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
113295083 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
113295102 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTTGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
113295164 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 66 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:113297981 original size:23 final size:23
Alignment explanation
Indices: 113297896--113297981 Score: 86
Period size: 23 Copynumber: 3.7 Consensus size: 23
113297886 TCAACTCGTA
113297896 AGAGCTTACTGT-TCAGCTCAAT
1 AGAGCTTACTGTATCAGCTCAAT
* * * *
113297918 AGAGCTTACCGTTTTAGCTCATT
1 AGAGCTTACTGTATCAGCTCAAT
*
113297941 AGAGCTTACTGTTCATCAGCTCAAG
1 AGAGCTTACTG-T-ATCAGCTCAAT
113297966 AGGAGCTTACTG-ATCA
1 A-GAGCTTACTGTATCA
113297982 TGACTCTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
22 11 0.21
23 22 0.42
24 1 0.02
25 8 0.15
26 10 0.19
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (23 bp):
AGAGCTTACTGTATCAGCTCAAT
Found at i:113299907 original size:29 final size:27
Alignment explanation
Indices: 113299873--113299975 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
113299863 TACTCGATCA
*
113299873 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
113299902 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
113299931 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
113299960 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
113299976 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:113307856 original size:29 final size:27
Alignment explanation
Indices: 113307822--113307924 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
113307812 TACTCGATCA
*
113307822 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
113307851 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
113307880 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
113307909 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
113307925 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:113316384 original size:24 final size:24
Alignment explanation
Indices: 113316333--113316383 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
113316323 TTCATAGGTC
* *
113316333 AAATAAATTATGCTAATAAATGTA
1 AAATAAATTATACTAATAAATCTA
*
113316357 AAATATATTATACTAATAAATACTA
1 AAATAAATTATACTAATAAAT-CTA
113316382 AA
1 AA
113316384 TCTTCTAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATCTA
Found at i:113316520 original size:271 final size:266
Alignment explanation
Indices: 113316037--113316578 Score: 814
Period size: 271 Copynumber: 2.0 Consensus size: 266
113316027 TAAAAGTGTC
* *
113316037 TATTTATAGACTAAATTCGTAGGTCAAATAAATTATGCTAATAAATACAAAATATATTATATTAA
1 TATTTATAGACTAAATTCATAGGTCAAATAAATTATGCTAATAAATACAAAATATATTATACTAA
* * * * **
113316102 TAGATATTGAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGTAAGTAATCTCTTAT
66 TAAATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAACAATCTCTTAT
* *
113316167 TTTATTTAATAAGAATTTGGGTCACACATATATTTATTAATTTATAATTAAAGTTAATTTAAAAA
131 TTTATTTAACAAGAATTTGGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTAAAAA
* *
113316232 AAATATTTTTAATCTAATAAGTACATTAACTAGACCAATATTACATATATATATTCTTATTATAA
196 AAATATTTTTAATCTAATAAATACATTAACTAGA--AA-AATA-ATATATAT-TTCTTATTATAA
*
113316297 CAGGTCTCACA
256 CAGGTCCCACA
* **
113316308 TATTTATAGATTAAATTCATAGGTCAAATAAATTATGCTAATAAATGTAAAATATATTATACTAA
1 TATTTATAGACTAAATTCATAGGTCAAATAAATTATGCTAATAAATACAAAATATATTATACTAA
*
113316373 TAAATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAACAATGTCTTAT
66 TAAATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAACAATCTCTTAT
****
113316438 TTTATTTAACAAGAATTTGGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTTTTTA
131 TTTATTTAACAAGAATTTGGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTAAAAA
* * **
113316503 AAATATTTTTAATCTAATAAATATATTAACTAGAAAAATATTATATATTTCTTATTATAATGGGT
196 AAATATTTTTAATCTAATAAATACATTAACTAGAAAAATAATATATATTTCTTATTATAACAGGT
113316568 CCCACA
261 CCCACA
113316574 TATTT
1 TATTT
113316579 TTGTTATACT
Statistics
Matches: 246, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
266 25 0.10
267 7 0.03
268 3 0.01
269 2 0.01
271 209 0.85
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (266 bp):
TATTTATAGACTAAATTCATAGGTCAAATAAATTATGCTAATAAATACAAAATATATTATACTAA
TAAATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAACAATCTCTTAT
TTTATTTAACAAGAATTTGGGTCACACATATATTTATTAATTTATAATTAAAATTAATTTAAAAA
AAATATTTTTAATCTAATAAATACATTAACTAGAAAAATAATATATATTTCTTATTATAACAGGT
CCCACA
Found at i:113316723 original size:22 final size:22
Alignment explanation
Indices: 113316683--113316736 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
113316673 TACGCAGACA
*
113316683 CTCATATACCCCTTATTTTCGTC
1 CTCATTTA-CCCTTATTTTCGTC
*
113316706 CTCATTTACCCTTGTTTTCGTC
1 CTCATTTACCCTTATTTTCGTC
113316728 CTCATTTAC
1 CTCATTTAC
113316737 TGCCTTTATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 22 0.76
23 7 0.24
ACGTcount: A:0.15, C:0.33, G:0.06, T:0.46
Consensus pattern (22 bp):
CTCATTTACCCTTATTTTCGTC
Found at i:113319903 original size:40 final size:40
Alignment explanation
Indices: 113319837--113320003 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
113319827 AAATTGAATG
* * *
113319837 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
113319876 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
113319916 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
113319956 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
113319996 ATATCCGG
1 ATATCCGG
113320004 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:113327865 original size:120 final size:119
Alignment explanation
Indices: 113327650--113327865 Score: 276
Period size: 120 Copynumber: 1.8 Consensus size: 119
113327640 ATTATGTGAG
** * * *
113327650 ATGAAATATGGATGTGTATGATTATTGATTTATGTGTGTATGAGTATTGAATGATACCCGGGCTA
1 ATGAAATATGGATGTCAATGATTATTGATGTATGTGTGCATGAGAATTGAATGATACCCGGGCTA
* * **
113327715 AGTCCCGAAGGCGAATATGCTTGTGATATATGTGTTTGAGCCTTAGTAACGAAA
66 AGTCCCGAAGACGAATATGCTGGAAATATATGTGTTTGAGCCTTAGTAACGAAA
* *
113327769 ATGAAATATGTATGTCCAATGATTATTGATGTATGTGT-CATGAGAAATTGAATGATATCCGGGC
1 ATGAAATATGGATGT-CAATGATTATTGATGTATGTGTGCATGAG-AATTGAATGATACCCGGGC
113327833 TAAG-CCCGAAGAC-AATTATGCTGGAAATTATAT
64 TAAGTCCCGAAGACGAA-TATGCTGGAAA-TATAT
113327866 CCGGGTTAAG
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 2 0.02
119 35 0.43
120 45 0.55
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (119 bp):
ATGAAATATGGATGTCAATGATTATTGATGTATGTGTGCATGAGAATTGAATGATACCCGGGCTA
AGTCCCGAAGACGAATATGCTGGAAATATATGTGTTTGAGCCTTAGTAACGAAA
Found at i:113327889 original size:40 final size:40
Alignment explanation
Indices: 113327823--113327989 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
113327813 AAATTGAATG
* * *
113327823 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
113327862 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
113327902 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
113327942 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
113327982 ATATCCGG
1 ATATCCGG
113327990 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:113330997 original size:40 final size:40
Alignment explanation
Indices: 113330942--113331150 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
113330932 AACATTGGAA
113330942 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
113330982 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
113331022 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
113331062 ATATATCCGGGCTAAGA-CCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
113331100 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
113331141 CTATATCCGG
1 ATATATCCGG
113331151 TTAAATCCCG
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.01
39 28 0.19
40 119 0.80
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:113331075 original size:80 final size:78
Alignment explanation
Indices: 113330942--113331150 Score: 292
Period size: 79 Copynumber: 2.6 Consensus size: 78
113330932 AACATTGGAA
113330942 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGA-CCGAAGG
* *
113331007 CATTCGTGCGAGTTG
65 CATTCGTGCAAG-TC
113331022 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
* *
113331087 CTTTGTGCAAGTC
66 ATTCGTGCAAGTC
* * * * * * *
113331100 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCGCTATATCCGG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
113331151 TTAAATCCCG
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
78 2 0.02
79 58 0.50
80 57 0.49
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (78 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
ATTCGTGCAAGTC
Found at i:113339119 original size:40 final size:40
Alignment explanation
Indices: 113339064--113339273 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
113339054 AACATTGGAA
113339064 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
113339104 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
113339144 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
113339184 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
113339223 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
113339264 CTATATCCGG
1 ATATATCCGG
113339274 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:113344782 original size:9 final size:9
Alignment explanation
Indices: 113344749--113344803 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
113344739 TAGGAACACT
113344749 TTATTTTTA
1 TTATTTTTA
*
113344758 TTA-ATTTA
1 TTATTTTTA
*
113344766 GCTATTTTTA
1 -TTATTTTTA
113344776 TTATTTTTA
1 TTATTTTTA
113344785 TTTTATTTTTA
1 --TTATTTTTA
113344796 -TATTTTTA
1 TTATTTTTA
113344804 ATTTAATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
8 12 0.32
9 13 0.34
10 4 0.11
11 9 0.24
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (9 bp):
TTATTTTTA
Found at i:113344808 original size:19 final size:20
Alignment explanation
Indices: 113344768--113344808 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
113344758 TTAATTTAGC
*
113344768 TATTTTTATTATTTTTATTT
1 TATTTTTATTATTTTTAATT
113344788 TATTTTTA-TATTTTTAATT
1 TATTTTTATTATTTTTAATT
113344807 TA
1 TA
113344809 ATTTCTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (20 bp):
TATTTTTATTATTTTTAATT
Found at i:113344812 original size:20 final size:20
Alignment explanation
Indices: 113344769--113344812 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
113344759 TAATTTAGCT
*
113344769 ATTTTTATTATTTTTATTTT
1 ATTTTTATTATTTTTATTTA
113344789 ATTTTTA-TATTTTTAATTTA
1 ATTTTTATTATTTTT-ATTTA
113344809 ATTT
1 ATTT
113344813 CTACATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (20 bp):
ATTTTTATTATTTTTATTTA
Found at i:113348735 original size:40 final size:39
Alignment explanation
Indices: 113348690--113348897 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
113348680 CGGAATACAA
*
113348690 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
113348730 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
113348770 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * ** * * *
113348810 CTGGATGTAGTCACTAGCACAATTGCCTTCAGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
113348850 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
113348890 CCGGATAT
1 CCGGATAT
113348898 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:113348830 original size:80 final size:80
Alignment explanation
Indices: 113348690--113348896 Score: 222
Period size: 80 Copynumber: 2.6 Consensus size: 80
113348680 CGGAATACAA
* *
113348690 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
* *
113348755 CCTTCGGGTATTAGC
66 CCTTCAGGTATTAAC
* * * * *
113348770 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCTGGAT-GTA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAA
*
113348833 TGCCTTCAGGTCTTAAC
64 TGCCTTCAGGTATTAAC
** ** * *
113348850 CCGGATATAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
113348897 TCATTCAATT
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
79 3 0.03
80 101 0.96
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCAGGTATTAAC
Found at i:113349421 original size:16 final size:16
Alignment explanation
Indices: 113349396--113349449 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
113349386 AAGTGCTCAA
113349396 ATTACTCATGTGGCCG
1 ATTACTCATGTGGCCG
*
113349412 ATTACACA--TGGCCG
1 ATTACTCATGTGGCCG
113349426 ATTACTCATGTGGCCG
1 ATTACTCATGTGGCCG
113349442 ATTACTCA
1 ATTACTCA
113349450 AGAGTAGATC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.38
16 21 0.62
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (16 bp):
ATTACTCATGTGGCCG
Found at i:113349425 original size:14 final size:15
Alignment explanation
Indices: 113349405--113349446 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
113349395 AATTACTCAT
113349405 GTGGCCGATTACACA
1 GTGGCCGATTACACA
*
113349420 -TGGCCGATTACTCA
1 GTGGCCGATTACACA
113349434 TGTGGCCGATTAC
1 -GTGGCCGATTAC
113349447 TCAAGAGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 13 0.54
16 11 0.46
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (15 bp):
GTGGCCGATTACACA
Found at i:113352693 original size:6 final size:6
Alignment explanation
Indices: 113352682--113352709 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
113352672 AAAATGTATT
113352682 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
113352710 AGGATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:113354138 original size:18 final size:18
Alignment explanation
Indices: 113354091--113354138 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
113354081 CTTTTTTAGT
113354091 ATTTTTATAT-ATTTTTA
1 ATTTTTATATCATTTTTA
* *
113354108 A-TTTAATAACATTTTTA
1 ATTTTTATATCATTTTTA
113354125 ATTTTTATATCATT
1 ATTTTTATATCATT
113354139 ATTTTTACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 6 0.24
17 9 0.36
18 10 0.40
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTATATCATTTTTA
Done.