Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 37 of 770
Found at i:10492677 original size:4 final size:4
Alignment explanation
Indices: 10492668--10492702 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
10492658 GACCTGAATA
10492668 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
10492703 GACTTTCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:10494900 original size:17 final size:16
Alignment explanation
Indices: 10494875--10494912 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
10494865 ATTCATTTCC
*
10494875 TTTTCTTTCTTTTCTTT
1 TTTTTTTTCTTTT-TTT
10494892 TTTTTTTTCTTTTTTT
1 TTTTTTTTCTTTTTTT
10494908 TTTTT
1 TTTTT
10494913 GGGGGGGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (16 bp):
TTTTTTTTCTTTTTTT
Found at i:10500127 original size:4 final size:4
Alignment explanation
Indices: 10500118--10500152 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
10500108 TATATACATG
10500118 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
10500153 CTTGTGGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:10504508 original size:18 final size:18
Alignment explanation
Indices: 10504485--10504520 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
10504475 CATTAAAAAG
*
10504485 AATGAATTGATGTTTTCC
1 AATGAATTGATATTTTCC
10504503 AATGAATTGATATTTTCC
1 AATGAATTGATATTTTCC
10504521 TGTTTCGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (18 bp):
AATGAATTGATATTTTCC
Found at i:10510947 original size:6 final size:6
Alignment explanation
Indices: 10510938--10510963 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10510928 GGTAGTATCC
10510938 CATTGG CATTGG CATTGG CATTGG CA
1 CATTGG CATTGG CATTGG CATTGG CA
10510964 AATCCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (6 bp):
CATTGG
Found at i:10516514 original size:2 final size:2
Alignment explanation
Indices: 10516507--10516533 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10516497 CCCTCTATAT
10516507 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
10516534 TCCTCTCCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:10529972 original size:23 final size:23
Alignment explanation
Indices: 10529942--10529987 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
10529932 TACGTCAAAC
*
10529942 CTGTGTTTGAATTATAAGTGCCA
1 CTGTGTTTGAATTAAAAGTGCCA
10529965 CTGTGTTTGAATTAAAAGTGCCA
1 CTGTGTTTGAATTAAAAGTGCCA
10529988 ACCTTGTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (23 bp):
CTGTGTTTGAATTAAAAGTGCCA
Found at i:10532993 original size:28 final size:30
Alignment explanation
Indices: 10532948--10533017 Score: 99
Period size: 28 Copynumber: 2.4 Consensus size: 30
10532938 GAATTGAATC
*
10532948 AAATCAAATTTTATGTATAAAATTGCACA-
1 AAATCAAAGTTTATGTATAAAATTGCACAT
*
10532977 AAATCAAAGTTT-TGTATAAAATTGTACATT
1 AAATCAAAGTTTATGTATAAAATTGCACA-T
10533007 AAATCAAAGTT
1 AAATCAAAGTT
10533018 CATGGTTAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 15 0.41
29 11 0.30
30 11 0.30
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (30 bp):
AAATCAAAGTTTATGTATAAAATTGCACAT
Found at i:10535097 original size:20 final size:21
Alignment explanation
Indices: 10535063--10535103 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
10535053 TATTTATATT
10535063 TATATATTAAGTTAC-AAAAA
1 TATATATTAAGTTACTAAAAA
* *
10535083 TATATATTTATTTACTAAAAA
1 TATATATTAAGTTACTAAAAA
10535104 GATTATAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (21 bp):
TATATATTAAGTTACTAAAAA
Found at i:10539116 original size:15 final size:16
Alignment explanation
Indices: 10539084--10539121 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
10539074 ATTTTAAATT
* *
10539084 TTAAAAATTATACGAA
1 TTAAAAATGATACCAA
10539100 TTAAAAATGAT-CCAA
1 TTAAAAATGATACCAA
10539115 TTAAAAA
1 TTAAAAA
10539122 ATATGGACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (16 bp):
TTAAAAATGATACCAA
Found at i:10545563 original size:13 final size:14
Alignment explanation
Indices: 10545540--10545566 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10545530 TTTATAATTG
10545540 AAATTTAAAAAAAA
1 AAATTTAAAAAAAA
10545554 AAATTTAAAAAAA
1 AAATTTAAAAAAA
10545567 GTCAAAGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAATTTAAAAAAAA
Found at i:10550867 original size:12 final size:12
Alignment explanation
Indices: 10550850--10550874 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10550840 ATAATTATAC
10550850 TTATCTCATTTT
1 TTATCTCATTTT
10550862 TTATCTCATTTT
1 TTATCTCATTTT
10550874 T
1 T
10550875 GTAATGTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATCTCATTTT
Found at i:10552256 original size:33 final size:34
Alignment explanation
Indices: 10552197--10552263 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
10552187 TATCTTTTGC
*
10552197 CAAGATTTGGGTGAAAAGGACTAAAGCTTTGAGA
1 CAAGATTTGGGTGAAAAGGACTAAAGCTGTGAGA
*
10552231 CAAGATTTGGG-GAAAGGGACTAAAGCTGTGAGA
1 CAAGATTTGGGTGAAAAGGACTAAAGCTGTGAGA
10552264 GTGTGTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 20 0.65
34 11 0.35
ACGTcount: A:0.37, C:0.09, G:0.33, T:0.21
Consensus pattern (34 bp):
CAAGATTTGGGTGAAAAGGACTAAAGCTGTGAGA
Found at i:10552518 original size:2 final size:2
Alignment explanation
Indices: 10552511--10552536 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10552501 TTTACTCTTA
10552511 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10552537 GCTTAAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10553153 original size:19 final size:19
Alignment explanation
Indices: 10553117--10553155 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
10553107 TATTATTAAT
**
10553117 ATATTTATAATTGTAATAA
1 ATATTTATAATTAAAATAA
*
10553136 ATATTTATTATTAAAATAA
1 ATATTTATAATTAAAATAA
10553155 A
1 A
10553156 ATTGAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:10553217 original size:30 final size:29
Alignment explanation
Indices: 10553110--10553217 Score: 68
Period size: 26 Copynumber: 3.8 Consensus size: 29
10553100 AAACATTTAT
* *
10553110 TATTAA-TATATTTATAATTGTAATAAATATT
1 TATTAATTATA-TTAAAATT-TAATAAAT-TA
* * * *
10553141 TATT-ATTAAAATAAAATTGAA-ATATTA
1 TATTAATTATATTAAAATTTAATAAATTA
*
10553168 -AATAATT-TATTAAAA--TAATAAATTA
1 TATTAATTATATTAAAATTTAATAAATTA
10553193 TATTAATTATATTAATAATTTAATA
1 TATTAATTATATTAA-AATTTAATA
10553218 TTTGACTAGT
Statistics
Matches: 57, Mismatches: 12, Indels: 17
0.66 0.14 0.20
Matches are distributed among these distances:
24 2 0.04
25 5 0.09
26 14 0.25
27 10 0.18
28 5 0.09
29 2 0.04
30 12 0.21
31 7 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
TATTAATTATATTAAAATTTAATAAATTA
Found at i:10554745 original size:13 final size:13
Alignment explanation
Indices: 10554727--10554755 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
10554717 TTTGTTTCTC
10554727 ATTGCTTTTCAAA
1 ATTGCTTTTCAAA
10554740 ATTGCTTTTCAAA
1 ATTGCTTTTCAAA
10554753 ATT
1 ATT
10554756 ATATATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTGCTTTTCAAA
Found at i:10563647 original size:12 final size:13
Alignment explanation
Indices: 10563630--10563662 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
10563620 CCCGTATTAA
*
10563630 ATTTTTTATAT-T
1 ATTTTTTATATAC
10563642 ATTTTTTATATAC
1 ATTTTTTATATAC
10563655 ATTTTTTA
1 ATTTTTTA
10563663 AAAAATGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTTTATATAC
Found at i:10578762 original size:2 final size:2
Alignment explanation
Indices: 10578755--10578783 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10578745 TGTAATAATG
10578755 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10578784 CAATAATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10592512 original size:30 final size:32
Alignment explanation
Indices: 10592477--10592535 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
10592467 TTTGAACTGC
10592477 AATC-AAA-ATTTCATATAT-ATAATTATACCA
1 AATCAAAATATTTCATATATCA-AATTATACCA
10592507 AATCAAAATATTTCATATATCAAATTATA
1 AATCAAAATATTTCATATATCAAATTATA
10592536 TATTAAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.15
31 3 0.12
32 18 0.69
33 1 0.04
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (32 bp):
AATCAAAATATTTCATATATCAAATTATACCA
Found at i:10596561 original size:28 final size:28
Alignment explanation
Indices: 10596527--10596591 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 28
10596517 TAAAATTTAC
*
10596527 TTTAAATTTAAATTGATCGGATTGAATT
1 TTTAAATTTAAATTGATCGGATTAAATT
10596555 TTTAAATTT-AATTGATCGGATTAAATT
1 TTTAAATTTAAATTGATCGGATTAAATT
10596582 TTTAAATTTA
1 TTTAAATTTA
10596592 CGTCAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 26 0.74
28 9 0.26
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.49
Consensus pattern (28 bp):
TTTAAATTTAAATTGATCGGATTAAATT
Found at i:10600970 original size:18 final size:18
Alignment explanation
Indices: 10600938--10600972 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10600928 TTATTTAAAT
**
10600938 TTTTAATTTTTTAAAAAA
1 TTTTAATTTAATAAAAAA
10600956 TTTTAATTTAATAAAAA
1 TTTTAATTTAATAAAAA
10600973 TAAAATTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAATTTAATAAAAAA
Found at i:10608813 original size:13 final size:13
Alignment explanation
Indices: 10608793--10608830 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
10608783 AGTTTGGCAA
10608793 TACTTTTAAAAAG
1 TACTTTTAAAAAG
*
10608806 TGCTTTTAAAAAG
1 TACTTTTAAAAAG
10608819 TACTTTTGAAAA
1 TACTTTT-AAAA
10608831 TTTTGATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 18 0.82
14 4 0.18
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (13 bp):
TACTTTTAAAAAG
Found at i:10614589 original size:23 final size:23
Alignment explanation
Indices: 10614559--10614603 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
10614549 ATAGAATTCT
10614559 GCATCTTCCAAAGTGATTGTCAA
1 GCATCTTCCAAAGTGATTGTCAA
10614582 GCATCTTCCAAAGTGATTGTCA
1 GCATCTTCCAAAGTGATTGTCA
10614604 CATTATTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (23 bp):
GCATCTTCCAAAGTGATTGTCAA
Found at i:10614651 original size:20 final size:20
Alignment explanation
Indices: 10614626--10614667 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
10614616 CGCTTGTTAA
10614626 ATTAAGTGATAAAGAATTCG
1 ATTAAGTGATAAAGAATTCG
*
10614646 ATTAAGTGGTAAAGAATTCG
1 ATTAAGTGATAAAGAATTCG
10614666 AT
1 AT
10614668 GTCTCTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
ATTAAGTGATAAAGAATTCG
Found at i:10624891 original size:22 final size:21
Alignment explanation
Indices: 10624866--10624925 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
10624856 CATATGTACC
10624866 ATAATTTTTATAATTTTAATTT
1 ATAATTTTT-TAATTTTAATTT
** *
10624888 ATAAACCTCTTAATTTTAATTT
1 AT-AATTTTTTAATTTTAATTT
*
10624910 ACAATTTCTTTAATTT
1 ATAATTT-TTTAATTT
10624926 CTATGCCATT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.10
22 22 0.76
23 4 0.14
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (21 bp):
ATAATTTTTTAATTTTAATTT
Found at i:10626192 original size:118 final size:118
Alignment explanation
Indices: 10625979--10626209 Score: 403
Period size: 118 Copynumber: 2.0 Consensus size: 118
10625969 ATAATATTTT
10625979 TACCATAAAAGAGGTGTTTACGACAAAAAGCATAGATGTGGTGCTACGAAGATCAAGCATAGTAG
1 TACCATAAAAGAGGTGTTTACGACAAAAAGCATAGATGTGGTGCTACGAAGATCAAGCATAGTAG
* *
10626044 AAGAGAGTGAAGACCAAGTAAAGCTTTTTGTATGAAAGGAAATTATTTTCAGC
66 AAGAGAGTGAAGACCAAGTAAAGCTCTTTGTACGAAAGGAAATTATTTTCAGC
*
10626097 TACCGTAAAAGAGGTGTTTACGACAACAAA-CATAGATGTGGTGCTACGAAGATCAAGCATAGTA
1 TACCATAAAAGAGGTGTTTACGACAA-AAAGCATAGATGTGGTGCTACGAAGATCAAGCATAGTA
10626161 GAA-AGGAGTGAAGACCAAGTAAAGCTCTTTGTACGAAAGGAAATTATTT
65 GAAGA-GAGTGAAGACCAAGTAAAGCTCTTTGTACGAAAGGAAATTATTT
10626210 CAAGTTGAAA
Statistics
Matches: 108, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
117 1 0.01
118 104 0.96
119 3 0.03
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (118 bp):
TACCATAAAAGAGGTGTTTACGACAAAAAGCATAGATGTGGTGCTACGAAGATCAAGCATAGTAG
AAGAGAGTGAAGACCAAGTAAAGCTCTTTGTACGAAAGGAAATTATTTTCAGC
Found at i:10629175 original size:21 final size:21
Alignment explanation
Indices: 10629149--10629189 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10629139 ATCTGCTCAA
* *
10629149 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
10629170 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
10629190 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:10637416 original size:24 final size:24
Alignment explanation
Indices: 10637379--10637426 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10637369 AGTAACCATT
*
10637379 CATTTCATTGTTTTTATAAATTTTA
1 CATTTCATCGTTTTTA-AAATTTTA
*
10637404 CATTT-ATCGTTTTTAACATTTTA
1 CATTTCATCGTTTTTAAAATTTTA
10637427 TGGATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 9 0.43
25 5 0.24
ACGTcount: A:0.27, C:0.10, G:0.04, T:0.58
Consensus pattern (24 bp):
CATTTCATCGTTTTTAAAATTTTA
Found at i:10646067 original size:21 final size:21
Alignment explanation
Indices: 10646043--10646085 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10646033 TTTTTTTCCC
* *
10646043 TCTCTCTCTTTGTATTTTTTT
1 TCTCCCTCTTTGGATTTTTTT
*
10646064 TCTCCCTCTTTGGGTTTTTTT
1 TCTCCCTCTTTGGATTTTTTT
10646085 T
1 T
10646086 TTTTTTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.21, G:0.09, T:0.67
Consensus pattern (21 bp):
TCTCCCTCTTTGGATTTTTTT
Found at i:10646586 original size:31 final size:31
Alignment explanation
Indices: 10646548--10646625 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
10646538 ATTATCAAAA
*
10646548 TAGTCACTTTTGTTTATCTCAAGTTACATTT
1 TAGTCACTTTTATTTATCTCAAGTTACATTT
* *
10646579 TAGTCACTTTTATTTATCTCAGGTTACGTTT
1 TAGTCACTTTTATTTATCTCAAGTTACATTT
*
10646610 TAGTCACTTATATTTA
1 TAGTCACTTTTATTTA
10646626 AAATGTTACG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.51
Consensus pattern (31 bp):
TAGTCACTTTTATTTATCTCAAGTTACATTT
Found at i:10655284 original size:118 final size:118
Alignment explanation
Indices: 10655076--10655307 Score: 439
Period size: 118 Copynumber: 2.0 Consensus size: 118
10655066 TCTTTGGCTG
10655076 TCTGTGAAAACAAAAGGGTTAATTCATAGAAAGTGCTTAAACTATGACCTATATTTTAATTTGGT
1 TCTGTGAAAACAAAAGGGTTAATTCATAGAAAGTGCTTAAACTATGACCTATATTTTAATTTGGT
*
10655141 CCCCAATTTTCAAAATGTTCCCATTGAGTTTTCAAAG-GATCACTATGTAGCTA
66 CCCCAAATTTCAAAATGTTCCCATTGAGTTTTCAAAGTG-TCACTATGTAGCTA
10655194 TCTGTGAAAACAAAAGGGTTAATTCATAGAAAGTGCTTAAACTATGACCTATATTTTAATTTGGT
1 TCTGTGAAAACAAAAGGGTTAATTCATAGAAAGTGCTTAAACTATGACCTATATTTTAATTTGGT
10655259 CCCCAAATTTCAAAATGTTCCCATTGAGTTTTCAAAGTGTCACTATGTA
66 CCCCAAATTTCAAAATGTTCCCATTGAGTTTTCAAAGTGTCACTATGTA
10655308 TCAATTAAGT
Statistics
Matches: 112, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
118 111 0.99
119 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (118 bp):
TCTGTGAAAACAAAAGGGTTAATTCATAGAAAGTGCTTAAACTATGACCTATATTTTAATTTGGT
CCCCAAATTTCAAAATGTTCCCATTGAGTTTTCAAAGTGTCACTATGTAGCTA
Found at i:10657190 original size:2 final size:2
Alignment explanation
Indices: 10657183--10657211 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10657173 ACTTCCAACT
10657183 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10657212 GTAAATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10657400 original size:21 final size:21
Alignment explanation
Indices: 10657376--10657416 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10657366 TTGGGATTCG
10657376 AGGTTC-GAGATTTTGAGTTCA
1 AGGTTCTG-GATTTTGAGTTCA
*
10657397 AGGTTCTGGGTTTTGAGTTC
1 AGGTTCTGGATTTTGAGTTC
10657417 GATGTTTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.17, C:0.10, G:0.32, T:0.41
Consensus pattern (21 bp):
AGGTTCTGGATTTTGAGTTCA
Found at i:10661172 original size:34 final size:34
Alignment explanation
Indices: 10661142--10661207 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 34
10661132 ACATATTTGA
*
10661142 CAATTTAAATATAAATTA-T-TCTATTTATATTT
1 CAATTTAAATATAAATAATTGTCTATTTATATTT
* * *
10661174 TATTTTATATATAAATAATTGTCTATTTATATTT
1 CAATTTAAATATAAATAATTGTCTATTTATATTT
10661208 ATATATATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 14 0.50
33 1 0.04
34 13 0.46
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (34 bp):
CAATTTAAATATAAATAATTGTCTATTTATATTT
Found at i:10664915 original size:10 final size:9
Alignment explanation
Indices: 10664898--10664939 Score: 61
Period size: 8 Copynumber: 4.8 Consensus size: 9
10664888 ATATTAAAAA
10664898 TATATTTTT
1 TATATTTTT
10664907 TATTATTTTT
1 TA-TATTTTT
10664917 TATA-TTTT
1 TATATTTTT
10664925 TATA-TTTT
1 TATATTTTT
10664933 TATATTT
1 TATATTT
10664940 AAAATTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 16 0.52
9 6 0.19
10 9 0.29
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TATATTTTT
Found at i:10674342 original size:10 final size:10
Alignment explanation
Indices: 10674327--10674352 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10674317 ATCTAGTGAA
10674327 TATATATATG
1 TATATATATG
10674337 TATATATATG
1 TATATATATG
10674347 TATATA
1 TATATA
10674353 AGCTGTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (10 bp):
TATATATATG
Found at i:10677703 original size:16 final size:17
Alignment explanation
Indices: 10677660--10677721 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 17
10677650 AATTTAATTA
*
10677660 TAATTTAAATTACGATAT
1 TAATTT-AATTATGATAT
*
10677678 AAATTT-ATTATG-TAT
1 TAATTTAATTATGATAT
*
10677693 TAATTTAATTATAATAGT
1 TAATTTAATTATGATA-T
10677711 TAATTTTAATT
1 TAA-TTTAATT
10677722 GAATTCGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
15 8 0.22
16 10 0.28
17 2 0.06
18 9 0.25
19 7 0.19
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (17 bp):
TAATTTAATTATGATAT
Found at i:10678477 original size:53 final size:49
Alignment explanation
Indices: 10678411--10678511 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 49
10678401 GCAGCAGCAG
*
10678411 AAGAAGAAGAAGAAGAGTACTGAAGATGGTGACAAGAAACAACCGAATGA
1 AAGAAGAAGAAGAAGAATACTGAAGATGGTGACAA-AAACAACCGAATGA
* *
10678461 AAGAAGAAGAAGAAGAATAGTGAAGATGGTGACAAAAATAACCGAATGA
1 AAGAAGAAGAAGAAGAATACTGAAGATGGTGACAAAAACAACCGAATGA
10678510 AA
1 AA
10678512 AATATATAGG
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 15 0.31
50 33 0.69
ACGTcount: A:0.54, C:0.08, G:0.27, T:0.11
Consensus pattern (49 bp):
AAGAAGAAGAAGAAGAATACTGAAGATGGTGACAAAAACAACCGAATGA
Found at i:10682756 original size:21 final size:21
Alignment explanation
Indices: 10682730--10682770 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10682720 AGACAAGCGA
* *
10682730 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
10682751 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
10682771 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:10688071 original size:8 final size:9
Alignment explanation
Indices: 10688060--10688122 Score: 53
Period size: 8 Copynumber: 7.2 Consensus size: 9
10688050 TTGTTTTGTC
10688060 ATTGTT-TT
1 ATTGTTATT
10688068 ATTGTTATT
1 ATTGTTATT
*
10688077 -TCGTTATT
1 ATTGTTATT
*
10688085 A-TATTATT
1 ATTGTTATT
*
10688093 ATT-TTTTT
1 ATTGTTATT
10688101 ATTGTTATT
1 ATTGTTATT
10688110 ATTTGTATATT
1 A-TTGT-TATT
10688121 AT
1 AT
10688123 ATAACTCTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
8 26 0.59
9 8 0.18
10 5 0.11
11 5 0.11
ACGTcount: A:0.22, C:0.02, G:0.08, T:0.68
Consensus pattern (9 bp):
ATTGTTATT
Found at i:10688091 original size:22 final size:22
Alignment explanation
Indices: 10688043--10688092 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
10688033 AAAAAAAAAA
* * *
10688043 ATTATTGTTGTTTTGTCATTGT
1 ATTATTGTTATTTCGTCATTAT
* *
10688065 TTTATTGTTATTTCGTTATTAT
1 ATTATTGTTATTTCGTCATTAT
10688087 ATTATT
1 ATTATT
10688093 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.04, G:0.12, T:0.66
Consensus pattern (22 bp):
ATTATTGTTATTTCGTCATTAT
Found at i:10688112 original size:36 final size:36
Alignment explanation
Indices: 10688064--10688143 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
10688054 TTTGTCATTG
* * * *
10688064 TTTTATTGTTA-T-TTCGT-TATTATATTATTATTT
1 TTTTATTGTTATTATTTGTATATTATATAACTATTC
*
10688097 TTTTATTGTTATTATTTGTATATTATATAACTCTTC
1 TTTTATTGTTATTATTTGTATATTATATAACTATTC
10688133 TTTTATTGTTA
1 TTTTATTGTTA
10688144 GTTTTATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
33 11 0.28
34 1 0.03
35 4 0.10
36 23 0.59
ACGTcount: A:0.23, C:0.05, G:0.06, T:0.66
Consensus pattern (36 bp):
TTTTATTGTTATTATTTGTATATTATATAACTATTC
Found at i:10696738 original size:20 final size:20
Alignment explanation
Indices: 10696713--10696750 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10696703 TATTTACAAA
10696713 GTAAATAATATTATTTATTT
1 GTAAATAATATTATTTATTT
*
10696733 GTAAATAATGTTATTTAT
1 GTAAATAATATTATTTAT
10696751 CAGATGATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
GTAAATAATATTATTTATTT
Found at i:10699385 original size:13 final size:13
Alignment explanation
Indices: 10699367--10699394 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10699357 CTTTATGTAC
10699367 ACCATCTAGATTA
1 ACCATCTAGATTA
10699380 ACCATCTAGATTA
1 ACCATCTAGATTA
10699393 AC
1 AC
10699395 TAGTCACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (13 bp):
ACCATCTAGATTA
Found at i:10702476 original size:33 final size:33
Alignment explanation
Indices: 10702434--10702524 Score: 164
Period size: 33 Copynumber: 2.8 Consensus size: 33
10702424 CTCTATTTCA
10702434 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
10702467 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
10702500 GGTTGCTGGACAGCAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
10702525 CAAGAAGAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.18, C:0.11, G:0.43, T:0.29
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:10704944 original size:287 final size:287
Alignment explanation
Indices: 10704428--10705240 Score: 1184
Period size: 287 Copynumber: 2.8 Consensus size: 287
10704418 AATCTGACAG
* * * * * *
10704428 ATAACGTGCTTCGGAAGTGATATTAGTAAAATTTTGAACTTAAAAGTCTGAAGTCATTGATTATG
1 ATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTAAAAATGTGAAGTCATTGATTATG
* *
10704493 CTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTATCGTATCAGCATTTGTAATTTC
66 CTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTTTCGTATAAGCATTTGTAATTTC
* * * *
10704558 CTATCTTCAACATAGTTTGATGATGATTTGGAAGGCATCTTTTTGATTATGGAATATGGTAAGTA
131 CTATTTTCAACATAGTTTGATGATGATTTGGATGGCATCTTTTTGATTATGGTATATGATAAGTA
* *
10704623 TAGCTTGTAGTTTGATGCTATGTTGCCCTATTCTTTTGCTTTTAACTTTGAAGTTGTTTGGAAGT
196 TAGCTTGTAGTTTGATGCTATGTTGTCCTATTCTTTTGCTTTTAACTTTGAAGTTATTTGGAAGT
10704688 AGTGATTGGTAGTGAAAAGCCAATATA
261 AGTGATTGGTAGTGAAAAGCCAATATA
*
10704715 ATAACGTGCTTTGGAAGTGATATTACTACATTTTTTAACTTAAAAATGTGAAGTCATTGATTATG
1 ATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTAAAAATGTGAAGTCATTGATTATG
*
10704780 CTTTCAAGTGGTTTAAGAACACAACTTTCCTGTTCTTTTGGTTTCGTATAAGCATTTGTAATTTC
66 CTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTTTCGTATAAGCATTTGTAATTTC
* * **
10704845 CTATTTTCAACATAGTTTGATGATGATTTGGGTGACATCTTTCCGATTATGGTATATGATAAGTA
131 CTATTTTCAACATAGTTTGATGATGATTTGGATGGCATCTTTTTGATTATGGTATATGATAAGTA
10704910 TAGCTTGTAGTTTGATGCTATGTTGTCCTATTCTTTTGCTTTTAACTTTGAAGTTATTTGGAAGT
196 TAGCTTGTAGTTTGATGCTATGTTGTCCTATTCTTTTGCTTTTAACTTTGAAGTTATTTGGAAGT
*
10704975 AGTGATTGGTAGTGAAAAGCCGATATA
261 AGTGATTGGTAGTGAAAAGCCAATATA
* *
10705002 ATAACGTGCTTCGGAAGTGATATTACTACATTTTTTGACTTAAAAATGTGAAGTCATTTAATTAT
1 ATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTAAAAATGTGAAGTCA-TTGATTAT
* * ** **
10705067 GCTTTCAAGTGGTTTAAGAACAGTCGACTTTCCTGTTCTTTT-GTTATCATTTAAGCATTCATGG
65 GCTTTCAAGTGGTTTAAGAACA--CGACTTTCCTGTTCTTTTGGTT-TCGTATAAGCATTTGTAA
* * * * * *
10705131 GTT-CTGGTTTTCAGCTTAGTTTGATGATGATCTGGATGGCATCTTTTTTATTATGGTATATGAT
127 TTTCCT-ATTTTCAACATAGTTTGATGATGATTTGGATGGCATCTTTTTGATTATGGTATATGAT
* * * * * *
10705195 AAGCATA-ATTGTAGTTCGATGCTATGTTTTCGTATTCATTTG-TTTT
191 AAGTATAGCTTGTAGTTTGATGCTATGTTGTCCTATTCTTTTGCTTTT
10705241 GAAAGTAGGG
Statistics
Matches: 474, Mismatches: 47, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
287 320 0.68
288 33 0.07
289 35 0.07
290 86 0.18
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (287 bp):
ATAACGTGCTTCGGAAGTGATATTACTACATTTTTTAACTTAAAAATGTGAAGTCATTGATTATG
CTTTCAAGTGGTTTAAGAACACGACTTTCCTGTTCTTTTGGTTTCGTATAAGCATTTGTAATTTC
CTATTTTCAACATAGTTTGATGATGATTTGGATGGCATCTTTTTGATTATGGTATATGATAAGTA
TAGCTTGTAGTTTGATGCTATGTTGTCCTATTCTTTTGCTTTTAACTTTGAAGTTATTTGGAAGT
AGTGATTGGTAGTGAAAAGCCAATATA
Found at i:10715721 original size:45 final size:45
Alignment explanation
Indices: 10715657--10715754 Score: 169
Period size: 45 Copynumber: 2.2 Consensus size: 45
10715647 TTGAAGAAGG
* *
10715657 TTCTTTCATGTTTATTAATCTGGAATTTCTCTCCCCGTGTTGTTT
1 TTCTTTCATGTTTATTAATCTAGAATTTCTCTCCCCGTGATGTTT
10715702 TTCTTTCATGTTTATTAATCTAGAATTTCTCTCCCCGTGATGTTT
1 TTCTTTCATGTTTATTAATCTAGAATTTCTCTCCCCGTGATGTTT
10715747 TCTCTTTC
1 T-TCTTTC
10715755 TCTTTTAAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 44 0.88
46 6 0.12
ACGTcount: A:0.14, C:0.21, G:0.11, T:0.53
Consensus pattern (45 bp):
TTCTTTCATGTTTATTAATCTAGAATTTCTCTCCCCGTGATGTTT
Found at i:10718421 original size:54 final size:54
Alignment explanation
Indices: 10718362--10718468 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
10718352 ATCAAATCCA
* *
10718362 TTAGTTTAAATTCGAAATGGCTTAGAATTTGAGTCAAACTCGAACAATAAAACT
1 TTAGTTTAAATTCGAAATGGCTTAGAATTTGAATCAAACTCAAACAATAAAACT
10718416 TTAGTTTAAATTCGAAATGGCTTAGAATTTGAATCAAACTCAAACAATAAAAC
1 TTAGTTTAAATTCGAAATGGCTTAGAATTTGAATCAAACTCAAACAATAAAAC
10718469 CAATGTCTCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (54 bp):
TTAGTTTAAATTCGAAATGGCTTAGAATTTGAATCAAACTCAAACAATAAAACT
Found at i:10720861 original size:29 final size:29
Alignment explanation
Indices: 10720819--10720876 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
10720809 GTTTAAAATG
10720819 ATTGATTGTTTCGTACGTGATGACATATT
1 ATTGATTGTTTCGTACGTGATGACATATT
10720848 ATTGATTGTTTCGTACGTGATGACATATT
1 ATTGATTGTTTCGTACGTGATGACATATT
10720877 TGCATGACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.10, G:0.21, T:0.45
Consensus pattern (29 bp):
ATTGATTGTTTCGTACGTGATGACATATT
Found at i:10723822 original size:51 final size:51
Alignment explanation
Indices: 10723756--10723853 Score: 187
Period size: 51 Copynumber: 1.9 Consensus size: 51
10723746 AAAACTGATA
*
10723756 AATGATAAAATTAGAGTAGGGGTCTAGGGGAGGACTAAATTGGTAACGATG
1 AATGATAAAATTAGAGTAGGGGTCTAGGGGAGGACTAAAGTGGTAACGATG
10723807 AATGATAAAATTAGAGTAGGGGTCTAGGGGAGGACTAAAGTGGTAAC
1 AATGATAAAATTAGAGTAGGGGTCTAGGGGAGGACTAAAGTGGTAAC
10723854 TTACAATGTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.22
Consensus pattern (51 bp):
AATGATAAAATTAGAGTAGGGGTCTAGGGGAGGACTAAAGTGGTAACGATG
Found at i:10726200 original size:2 final size:2
Alignment explanation
Indices: 10726193--10726221 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10726183 CCAACATAAA
10726193 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10726222 AACACGACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10729476 original size:30 final size:30
Alignment explanation
Indices: 10729418--10729484 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
10729408 ATCTTTATAT
* **
10729418 TTTTTAAAGAATTAAATTAAATTATTATTA
1 TTTTTAAAAAATTAAAAAAAATTATTATTA
10729448 TTTTTAAAAAATTAAAAAATAATT-TTATTA
1 TTTTTAAAAAATTAAAAAA-AATTATTATTA
*
10729478 TTATTAA
1 TTTTTAA
10729485 TTTAAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 28 0.88
31 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (30 bp):
TTTTTAAAAAATTAAAAAAAATTATTATTA
Found at i:10730146 original size:15 final size:14
Alignment explanation
Indices: 10730113--10730145 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
10730103 ATTTCACTGT
10730113 AAAAAGTACAAATA
1 AAAAAGTACAAATA
*
10730127 AAAAATTACAAATA
1 AAAAAGTACAAATA
10730141 AAAAA
1 AAAAA
10730146 AGGAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (14 bp):
AAAAAGTACAAATA
Found at i:10733468 original size:3 final size:3
Alignment explanation
Indices: 10733460--10733500 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
10733450 ATTTTAAGTT
10733460 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10733501 GTGAATTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:10735391 original size:130 final size:131
Alignment explanation
Indices: 10735206--10735506 Score: 320
Period size: 131 Copynumber: 2.3 Consensus size: 131
10735196 TGGAAAAGCG
* * * * *
10735206 CAACCCAACACGATAGGGC-TCGATTCTCAAATCGCCAAACATCGAACATTACCTTCATTTTGAA
1 CAACCCAACACGATAGGGCAT-GATTCCCGAATTGCCAAACACCGAACATTACCTTCATTTTAAA
*** *
10735270 GGA-TTTTAGAAAATGTGAGTGAAAAC-CTAAAGAAATATTCGATTGTTTTGAACAAACGAGAAA
65 GGATTTTTAGAAAACACGAGTG-AAACTCTAAAGAAATATTCGATTATTTTGAACAAACGAGAAA
10735333 TCA
129 TCA
* * ** * *
10735336 CAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCGAGTATTGCCTTCGTTTTAAAG
1 CAACCCAACACGATAGGGCATGATTCCCGAATTGCCAAACACCGAACATTACCTTCATTTTAAAG
* * * ** * * *
10735401 GATTTTTAGAAGACACGAGTGAAACTTTGAAGGGATATTCGATTATTTTGAGCAAACGCGAAATT
66 GATTTTTAGAAAACACGAGTGAAACTCTAAAGAAATATTCGATTATTTTGAACAAACGAGAAATC
*
10735466 G
131 A
* *
10735467 CAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAA
1 CAACCCAACACGATAGGGCATGATTCC-CGAATTGCCAAA
10735507 TATCGGATCT
Statistics
Matches: 139, Mismatches: 28, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
130 58 0.42
131 70 0.50
132 11 0.08
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (131 bp):
CAACCCAACACGATAGGGCATGATTCCCGAATTGCCAAACACCGAACATTACCTTCATTTTAAAG
GATTTTTAGAAAACACGAGTGAAACTCTAAAGAAATATTCGATTATTTTGAACAAACGAGAAATC
A
Found at i:10738522 original size:12 final size:12
Alignment explanation
Indices: 10738507--10738535 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
10738497 GGAAAAGAGA
10738507 AAATCAACGATC
1 AAATCAACGATC
10738519 AAATCAACGATC
1 AAATCAACGATC
10738531 AAATC
1 AAATC
10738536 CTTTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.07, T:0.17
Consensus pattern (12 bp):
AAATCAACGATC
Found at i:10738816 original size:2 final size:2
Alignment explanation
Indices: 10738809--10738848 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
10738799 GTTGATTTTC
10738809 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10738849 TTGGTGTTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10742396 original size:76 final size:76
Alignment explanation
Indices: 10742270--10742426 Score: 287
Period size: 76 Copynumber: 2.1 Consensus size: 76
10742260 TAATACATAT
* * *
10742270 TGCTTAGCGTTAAGATTGGAGTTCACATTGTTGGGTGGATGCTTGATATATCCCAATCATACATG
1 TGCTTAGCATCAAGATTGGAGTTCACATTGTTGGGTGGATACTTGATATATCCCAATCATACATG
10742335 ATATATATTTG
66 ATATATATTTG
10742346 TGCTTAGCATCAAGATTGGAGTTCACATTGTTGGGTGGATACTTGATATATCCCAATCATACATG
1 TGCTTAGCATCAAGATTGGAGTTCACATTGTTGGGTGGATACTTGATATATCCCAATCATACATG
10742411 ATATATATTTG
66 ATATATATTTG
10742422 TGCTT
1 TGCTT
10742427 TTAAAGGAAT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (76 bp):
TGCTTAGCATCAAGATTGGAGTTCACATTGTTGGGTGGATACTTGATATATCCCAATCATACATG
ATATATATTTG
Found at i:10744134 original size:5 final size:5
Alignment explanation
Indices: 10744124--10744156 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
10744114 CTTTTTGTGA
10744124 AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AA
10744157 TGAACAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:10744143 original size:11 final size:11
Alignment explanation
Indices: 10744124--10744153 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
10744114 CTTTTTGTGA
10744124 AAAAT-AAAAT
1 AAAATAAAAAT
10744134 AAAATAAAAAT
1 AAAATAAAAAT
10744145 AAAATAAAA
1 AAAATAAAA
10744154 TAATGAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:10744144 original size:16 final size:16
Alignment explanation
Indices: 10744123--10744156 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
10744113 TCTTTTTGTG
10744123 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
10744139 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
10744155 AA
1 AA
10744157 TGAACAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:10749898 original size:13 final size:13
Alignment explanation
Indices: 10749880--10749907 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10749870 TATATATATA
10749880 AAAGAAACAAAAG
1 AAAGAAACAAAAG
10749893 AAAGAAACAAAAG
1 AAAGAAACAAAAG
10749906 AA
1 AA
10749908 TAAAAAGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAGAAACAAAAG
Found at i:10750903 original size:15 final size:15
Alignment explanation
Indices: 10750885--10750941 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
10750875 TATCTGTTTT
10750885 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
10750900 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
10750915 ATTGAATTTATATTG
1 ATTGAATTTATATTG
10750930 ATTGAA-TTATAT
1 ATTGAATTTATAT
10750942 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:10750920 original size:30 final size:28
Alignment explanation
Indices: 10750881--10750939 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
10750871 TGAATATCTG
10750881 TTTTATTGAATTTATATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
10750910 TTTTGATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
10750939 T
1 T
10750940 ATAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:10751299 original size:21 final size:21
Alignment explanation
Indices: 10751241--10751301 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 21
10751231 AGGCACTTTA
10751241 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGT-TTT-AGGCACCTCG
* *
10751264 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTTTTAGGCACCTCG
10751285 TGTGTCGTTTTAGGCAC
1 TGTGTCGTTTTAGGCAC
10751302 TTTATGTGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 25 0.74
22 1 0.03
23 8 0.24
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTTTTAGGCACCTCG
Found at i:10751309 original size:21 final size:21
Alignment explanation
Indices: 10751229--10751313 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
10751219 GCTTTACCTA
* *
10751229 TTAGGCACTTTATGTGTCGTAT
1 TTAGGCACCTCATGTGTCGT-T
* *
10751251 TTCAGGCACCTCGTGTGTCGTA
1 TT-AGGCACCTCATGTGTCGTT
* *
10751273 TCAGGCACCTCGTGTGTCGTT
1 TTAGGCACCTCATGTGTCGTT
* *
10751294 TTAGGCACTTTATGTGTCGT
1 TTAGGCACCTCATGTGTCGT
10751314 ATACTGATCA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.39
Consensus pattern (21 bp):
TTAGGCACCTCATGTGTCGTT
Found at i:10751498 original size:18 final size:19
Alignment explanation
Indices: 10751477--10751517 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
10751467 AATGAAATGA
10751477 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
10751495 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
10751514 GAAA
1 GAAA
10751518 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:10754429 original size:11 final size:11
Alignment explanation
Indices: 10754405--10754438 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
10754395 AAAACTCAAA
*
10754405 TTTTCCTTTTTC
1 TTTT-CTTTCTC
10754417 TTTTCTTTCTC
1 TTTTCTTTCTC
10754428 TTTTCTTTCTC
1 TTTTCTTTCTC
10754439 CCCTGTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTCTTTCTC
Found at i:10771413 original size:20 final size:20
Alignment explanation
Indices: 10771388--10771426 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
10771378 AAAAGAAATG
10771388 GAAAATGTAAGAAAACAGAA
1 GAAAATGTAAGAAAACAGAA
*
10771408 GAAAATGTAGGAAAACAGA
1 GAAAATGTAAGAAAACAGA
10771427 TGGAGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.62, C:0.05, G:0.23, T:0.10
Consensus pattern (20 bp):
GAAAATGTAAGAAAACAGAA
Found at i:10771863 original size:15 final size:15
Alignment explanation
Indices: 10771845--10771874 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10771835 AAATTTTAAT
*
10771845 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
10771860 TTTTTATAATTTATA
1 TTTTTATAATTTATA
10771875 AATGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:10773655 original size:5 final size:4
Alignment explanation
Indices: 10773620--10773653 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
10773610 TATATATATA
*
10773620 TATT TATT GATT TATT TATT TATT TATTT TATT T
1 TATT TATT TATT TATT TATT TATT TA-TT TATT T
10773654 TAATTTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:10773844 original size:31 final size:30
Alignment explanation
Indices: 10773800--10773872 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
10773790 ATTTTAAATT
* *
10773800 AATAAAAATAAAATTATATTTTATC-TCTCAAA
1 AATAATAA-AAAATTA-ATTTAATCATCTC-AA
*
10773832 AATAATAAAAAATTAATTTAATCATTTCAA
1 AATAATAAAAAATTAATTTAATCATCTCAA
*
10773862 AATTATAAAAA
1 AATAATAAAAA
10773873 TGTAGATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 19 0.53
31 10 0.28
32 7 0.19
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.36
Consensus pattern (30 bp):
AATAATAAAAAATTAATTTAATCATCTCAA
Found at i:10774993 original size:31 final size:33
Alignment explanation
Indices: 10774932--10775009 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
10774922 TATTTATGGA
* *
10774932 ATATTATATATATTTTTTAAACTAAGAAATACG
1 ATATTATAAATATTTTTTAAAATAAGAAATACG
* *
10774965 ATATTA-AAATATTTTTATAAAATAAAATAATAAG
1 ATATTATAAATATTTTT-TAAAATAAGA-AATACG
*
10774999 ATATAATAAAT
1 ATATTATAAAT
10775010 CAAAATTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 9 0.24
33 14 0.38
34 10 0.27
35 4 0.11
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.40
Consensus pattern (33 bp):
ATATTATAAATATTTTTTAAAATAAGAAATACG
Found at i:10776595 original size:2 final size:2
Alignment explanation
Indices: 10776588--10776617 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10776578 ACTTAATAGG
10776588 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10776618 CACACTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10783385 original size:12 final size:12
Alignment explanation
Indices: 10783368--10783402 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
10783358 AAGCCTGCTC
10783368 ATATTAATTTTT
1 ATATTAATTTTT
10783380 ATATT-ATTTTT
1 ATATTAATTTTT
10783391 ATA-TAATTTTT
1 ATATTAATTTTT
10783402 A
1 A
10783403 AAATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 16 0.73
12 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:10783561 original size:30 final size:30
Alignment explanation
Indices: 10783525--10783584 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
10783515 ACTTAACAAG
*
10783525 CAAATGTCTCTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
10783555 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
10783585 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:10786407 original size:12 final size:11
Alignment explanation
Indices: 10786388--10786418 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
10786378 TGTATAACTT
10786388 TTATTTTATTA
1 TTATTTTATTA
10786399 TTAATTTTATTA
1 TT-ATTTTATTA
10786411 TTATTTTA
1 TTATTTTA
10786419 AAGACATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:10786408 original size:17 final size:17
Alignment explanation
Indices: 10786386--10786419 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
10786376 ATTGTATAAC
10786386 TTTTATT-TTATTATTAA
1 TTTTATTATTATT-TTAA
10786403 TTTTATTATTATTTTAA
1 TTTTATTATTATTTTAA
10786420 AGACATTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATTATTATTTTAA
Found at i:10786869 original size:27 final size:27
Alignment explanation
Indices: 10786834--10786899 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
10786824 TTCGTTAAGA
* *
10786834 ATTTCAAATTTTTATTCATGTTCATTT
1 ATTTAAAATTTGTATTCATGTTCATTT
* *
10786861 ATTTAAAATTATGTGTTCATGTTCGTTT
1 ATTTAAAATT-TGTATTCATGTTCATTT
* *
10786889 GTTTAATATTT
1 ATTTAAAATTT
10786900 ACGAACATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 10 0.31
28 22 0.69
ACGTcount: A:0.26, C:0.08, G:0.09, T:0.58
Consensus pattern (27 bp):
ATTTAAAATTTGTATTCATGTTCATTT
Found at i:10788661 original size:111 final size:111
Alignment explanation
Indices: 10788461--10788699 Score: 302
Period size: 111 Copynumber: 2.2 Consensus size: 111
10788451 TCAAGTATAT
* * * **
10788461 AGGCAAGAGCCGAATATTCAAAGACCCTTTTATGGAAGAGGTGCTGTAGGTGTACAGCCATTGTT
1 AGGCAAGAGCCGAATATACAAAGACCCTTTTATGCAAGAAGTGCTGTAGGTGTACAGCCATTGAG
** * *
10788526 TTCCATTAATCAAGTTTACGAAAACATGAGCCGAAGCATGCAGGGA
66 TTCCACAAATCAAGTTTACGAAAACATGAACAGAAGCATGCAGGGA
* * * **
10788572 TGGCAAGAACCGAATATACAGAGACCCTTTTATGCAAGACAG-GCTGTAGGTGTATGGCCATTGA
1 AGGCAAGAGCCGAATATACAAAGACCCTTTTATGCAAGA-AGTGCTGTAGGTGTACAGCCATTGA
*
10788636 GTTCCACAAATCAAGTTTATC-AAAACATGAACAGTAGCATGCAGGGA
65 GTTCCACAAATCAAGTTTA-CGAAAACATGAACAGAAGCATGCAGGGA
*
10788683 AGGCAAGAGCTGAATAT
1 AGGCAAGAGCCGAATAT
10788700 GATAACATCC
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
111 106 0.98
112 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (111 bp):
AGGCAAGAGCCGAATATACAAAGACCCTTTTATGCAAGAAGTGCTGTAGGTGTACAGCCATTGAG
TTCCACAAATCAAGTTTACGAAAACATGAACAGAAGCATGCAGGGA
Found at i:10788712 original size:111 final size:111
Alignment explanation
Indices: 10788546--10789345 Score: 685
Period size: 111 Copynumber: 7.4 Consensus size: 111
10788536 CAAGTTTACG
* * * * * * * * * *
10788546 AAAACATGAGCCGAAGCATGCAGGGATGGCAAGAACCGAATAT-ACAGAGACCCTTTTATGCAAG
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACA-ACATCCTTTGATGCAAG
* * * * * **
10788610 ACAGGCTGTAGGTG-TATGGCCATTGAGTTCC-ACAAATCAAGTTTATC
65 AGATGCTGTAGGTGAAAT-GCCATTGAGCTCCGAC-GATCAAGTCCATC
* * * *
10788657 AAAACATGAACAGTAGCATGCAGGGAAGGCAAGAGCTGAATATGATAACATCCTTTGATGCAAGA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
*
10788722 GATGCTGCAGGTGAAATGCCATCT-AGCTCCGACGATCAAGTCCATC
66 GATGCTGTAGGTGAAATGCCAT-TGAGCTCCGACGATCAAGTCCATC
* *
10788768 AAAACATGAATCGTAGCACGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
* *
10788833 GATGCT-TCAGGTGAAATGCCATCGAGCTCCGACGATCAAGCCCATC
66 GATGCTGT-AGGTGAAATGCCATTGAGCTCCGACGATCAAGTCCATC
* *
10788879 AAAAAATGAACTGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
* *
10788944 GATGCTGCAGGTGAAATGCCATCGAGCTCCGACGATCAAGTCCATC
66 GATGCTGTAGGTGAAATGCCATTGAGCTCCGACGATCAAGTCCATC
** * * ** *
10788990 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAGCACCCGATGATGTAAGA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
* * * * *
10789055 GATGCTGCAGATGAAATGGCATCGAG-TTC--C-ATC--G---ATC
66 GATGCTGTAGGTGAAATGCCATTGAGCTCCGACGATCAAGTCCATC
* ** * ** *
10789092 AAAACACGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAACACCCGATGATGTAAGA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
* * * *
10789157 GATGCTGCAGGTGAAATGGCATCGAG-TTC--C-ATC--G---ATC
66 GATGCTGTAGGTGAAATGCCATTGAGCTCCGACGATCAAGTCCATC
* ** * * ** * * *
10789194 AAAACACGAACCGTAGCATGCCTGGAACGCAAGAGCCAAATATGCCAACACCCTCTGATGCAAGA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
* ** * * * *
10789259 GAT-CTTGCAGGTGAAATGCCATTGAATTCCAAAGACCAAGTCAATC
66 GATGC-TGTAGGTGAAATGCCATTGAGCTCCGACGATCAAGTCCATC
* * ** * *
10789305 AAGACATGGACTATGGCATGCAAGGAAGGCAAGAGCCTGAA
1 AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAG-CTGAA
10789346 GTGACGATCA
Statistics
Matches: 596, Mismatches: 75, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
101 1 0.00
102 178 0.30
103 2 0.00
105 1 0.00
106 2 0.00
107 3 0.01
108 2 0.00
110 2 0.00
111 395 0.66
112 10 0.02
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (111 bp):
AAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATGACAACATCCTTTGATGCAAGA
GATGCTGTAGGTGAAATGCCATTGAGCTCCGACGATCAAGTCCATC
Found at i:10789289 original size:102 final size:102
Alignment explanation
Indices: 10788987--10789276 Score: 447
Period size: 102 Copynumber: 2.8 Consensus size: 102
10788977 GATCAAGTCC
* *
10788987 ATCAAAACATGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAGCACCCGATGATGTA
1 ATCAAAACACGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAACACCCGATGATGTA
*
10789052 AGAGATGCTGCAGATGAAATGGCATCGAGTTCCATCG
66 AGAGATGCTGCAGGTGAAATGGCATCGAGTTCCATCG
10789089 ATCAAAACACGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAACACCCGATGATGTA
1 ATCAAAACACGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAACACCCGATGATGTA
10789154 AGAGATGCTGCAGGTGAAATGGCATCGAGTTCCATCG
66 AGAGATGCTGCAGGTGAAATGGCATCGAGTTCCATCG
** * * ** * ** *
10789191 ATCAAAACACGAACCGTAGCATGCCTGGAACGCAAGAGCCAAATATGCCAACACCCTCTGATGCA
1 ATCAAAACACGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAACACCCGATGATGTA
10789256 AGAGAT-CTTGCAGGTGAAATG
66 AGAGATGC-TGCAGGTGAAATG
10789277 CCATTGAATT
Statistics
Matches: 174, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
101 1 0.01
102 173 0.99
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (102 bp):
ATCAAAACACGAACCGTAGCATGCAAGAAAGGCAAGAGCTGAATATTCCAACACCCGATGATGTA
AGAGATGCTGCAGGTGAAATGGCATCGAGTTCCATCG
Found at i:10797180 original size:27 final size:27
Alignment explanation
Indices: 10797142--10797209 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
10797132 AGTTCTCTCT
10797142 CTCAACTCAGCTTCAATGTCGTCTTCA
1 CTCAACTCAGCTTCAATGTCGTCTTCA
*
10797169 CTCAACTGAGCTTCAATGTCGTCTTCA
1 CTCAACTCAGCTTCAATGTCGTCTTCA
10797196 CTCAACTCAGCTTC
1 CTCAACTCAGCTTC
10797210 TTCATTGAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.22, C:0.34, G:0.12, T:0.32
Consensus pattern (27 bp):
CTCAACTCAGCTTCAATGTCGTCTTCA
Found at i:10798600 original size:41 final size:41
Alignment explanation
Indices: 10798510--10798864 Score: 481
Period size: 41 Copynumber: 8.8 Consensus size: 41
10798500 CATAGAGAAA
* * *
10798510 TAGCGGCGTTTTTGGTAAAACGCCGCTAAAAA-CAGAGCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
*
10798550 TAGCAGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
*
10798591 CAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT-AAGAGCAT
10798633 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
* *
10798674 TAGCGGCG--TTT--T-AAACGCCGCTAAAAAT-CGAAGCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAG-AGCAT
10798710 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
** * * ** * *
10798751 TAGCAACGCTTTTGGTAAAGCGCCACTAAAAATTGGGGCAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
* * *
10798792 TAGAGGCGGTTTTGGTAAAACGCCACTAAAAATAAGAGCAT
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
10798833 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
10798865 GTTTAGGGTT
Statistics
Matches: 275, Mismatches: 31, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
35 1 0.00
36 28 0.10
37 1 0.00
38 3 0.01
39 3 0.01
40 31 0.11
41 167 0.61
42 41 0.15
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
Found at i:10798725 original size:160 final size:161
Alignment explanation
Indices: 10798510--10798864 Score: 493
Period size: 160 Copynumber: 2.2 Consensus size: 161
10798500 CATAGAGAAA
*
10798510 TAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACAGAGCAATAGCAGCGCTTTTGGTAAAACGCCG
1 TAGCGGCG-CTTT-GTAAAACGCCGCTAAAAACAGAGCAATAGCAGCGCTTTTGGTAAAACGCCG
** * * *
10798575 CTAAAAATAAGAGCATCAGCGGCGCTTTTGGTAAAACGCCGCTAAAAATAAAGAGCATTAGCGGC
64 CTAAAAATAAGAGCATCAGCAACGCTTTTGGTAAAACGCCACTAAAAAT-AAGAGCAATAGAGGC
*
10798640 GCTTTTGGTAAAACGCCGCTAAAAATAAGAGCAT
128 GCTTTTGGTAAAACGCCACTAAAAATAAGAGCAT
*
10798674 TAGCGGCG-TTT-T-AAACGCCGCTAAAAATC-GAAGCAATAGCGGCGCTTTTGGTAAAACGCCG
1 TAGCGGCGCTTTGTAAAACGCCGCTAAAAA-CAG-AGCAATAGCAGCGCTTTTGGTAAAACGCCG
* * ** *
10798735 CTAAAAATAAGAGCATTAGCAACGCTTTTGGTAAAGCGCCACTAAAAATTGGGGCAATAGAGGCG
64 CTAAAAATAAGAGCATCAGCAACGCTTTTGGTAAAACGCCACTAAAAATAAGAGCAATAGAGGCG
*
10798800 GTTTTGGTAAAACGCCACTAAAAATAAGAGCAT
129 CTTTTGGTAAAACGCCACTAAAAATAAGAGCAT
10798833 TAGCGGCGCTTTTGGTAAAACGCCGCTAAAAA
1 TAGCGGCGC-TTT-GTAAAACGCCGCTAAAAA
10798865 GTTTAGGGTT
Statistics
Matches: 171, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
159 66 0.39
160 75 0.44
161 3 0.02
162 3 0.02
163 1 0.01
164 23 0.13
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (161 bp):
TAGCGGCGCTTTGTAAAACGCCGCTAAAAACAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCT
AAAAATAAGAGCATCAGCAACGCTTTTGGTAAAACGCCACTAAAAATAAGAGCAATAGAGGCGCT
TTTGGTAAAACGCCACTAAAAATAAGAGCAT
Found at i:10798962 original size:21 final size:22
Alignment explanation
Indices: 10798938--10798981 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
10798928 GGTTTATGTA
*
10798938 TTATGGTTTAAGGGTT-GGGGT
1 TTATGATTTAAGGGTTAGGGGT
10798959 TTATGATTTAAGGGTTAGGGGT
1 TTATGATTTAAGGGTTAGGGGT
10798981 T
1 T
10798982 AGGGGTTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.43
Consensus pattern (22 bp):
TTATGATTTAAGGGTTAGGGGT
Found at i:10798980 original size:7 final size:7
Alignment explanation
Indices: 10798970--10799003 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
10798960 TATGATTTAA
10798970 GGGTTAG
1 GGGTTAG
10798977 GGGTTAG
1 GGGTTAG
10798984 GGGTTAG
1 GGGTTAG
10798991 GGGTTAG
1 GGGTTAG
10798998 GGGTTA
1 GGGTTA
10799004 ATACTTAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.56, T:0.29
Consensus pattern (7 bp):
GGGTTAG
Found at i:10799254 original size:21 final size:21
Alignment explanation
Indices: 10799229--10799272 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
10799219 TTATAGTTAG
* *
10799229 GGGATATAGTTTAGGGTTTAA
1 GGGATATACTTTAGGGATTAA
10799250 GGGATATACTTTAGGGATTAA
1 GGGATATACTTTAGGGATTAA
10799271 GG
1 GG
10799273 TTATAGGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.34, T:0.34
Consensus pattern (21 bp):
GGGATATACTTTAGGGATTAA
Found at i:10802839 original size:183 final size:183
Alignment explanation
Indices: 10802531--10803265 Score: 1355
Period size: 183 Copynumber: 4.0 Consensus size: 183
10802521 GATATAGTTC
* * **
10802531 CATGTGTCTATATTAGTG-ATCTAATGTTGTATATGTTTCAGTTACTTCTTCCTGCTCCTCCTGC
1 CATGTGTCTATATTAGTGAAT-TAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGC
10802595 AACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAA
65 AACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAA
* *
10802660 AGTTTTCATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
130 AATTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
10802714 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
10802779 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
10802844 GTTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 ATTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
10802897 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
10802962 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
10803027 ATTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 ATTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
10803080 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
*
10803145 ACTATTGATTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
10803210 ATTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 ATTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
10803263 CAT
1 CAT
10803266 CTGTTCTAGG
Statistics
Matches: 541, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
183 539 1.00
184 2 0.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGATTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
ATTTTTATATTTGCTTGAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:10803486 original size:15 final size:15
Alignment explanation
Indices: 10803466--10803494 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10803456 GGAGTAAACC
10803466 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
10803481 AGGTACGTTTTATT
1 AGGTACGTTTTATT
10803495 TTAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:10804465 original size:274 final size:275
Alignment explanation
Indices: 10803756--10804583 Score: 1640
Period size: 275 Copynumber: 3.0 Consensus size: 275
10803746 CCAACCTTAT
10803756 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
10803821 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
10803886 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
10803951 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
10804016 TGTTTGATTTTAATA
261 TGTTTGATTTTAATA
10804031 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
10804096 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
10804161 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
10804226 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
10804290 TGTTTGATTTTAATA
261 TGTTTGATTTTAATA
10804305 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
10804370 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
10804435 AAAGACTTGAAAATAGTTCTATCAAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
10804500 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
10804565 TGTTTGATTTTAATA
261 TGTTTGATTTTAATA
10804580 TTTA
1 TTTA
10804584 CGATTCTTTT
Statistics
Matches: 551, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
274 273 0.50
275 278 0.50
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (275 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAATAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
TGTTTGATTTTAATA
Found at i:10804736 original size:9 final size:9
Alignment explanation
Indices: 10804724--10804885 Score: 70
Period size: 9 Copynumber: 18.4 Consensus size: 9
10804714 CAAAACGTAC
10804724 ATAACTTAT
1 ATAACTTAT
*
10804733 ATAACTTAG
1 ATAACTTAT
*
10804742 ATAA-ATAT
1 ATAACTTAT
*
10804750 ATAACTTAC
1 ATAACTTAT
*
10804759 ATAACTTAC
1 ATAACTTAT
*
10804768 ATAATACTTAA
1 AT-A-ACTTAT
*
10804779 ATATA-TTTT
1 ATA-ACTTAT
*
10804788 AT-A-TCAT
1 ATAACTTAT
*
10804795 A-AA-TTAC
1 ATAACTTAT
*
10804802 ATAACTTAC
1 ATAACTTAT
10804811 ATAACTTAT
1 ATAACTTAT
*
10804820 ATAACTTAG
1 ATAACTTAT
*
10804829 ATAA-ATAT
1 ATAACTTAT
* *
10804837 ATAATTTAC
1 ATAACTTAT
*
10804846 ATAA-ATAT
1 ATAACTTAT
* *
10804854 ATATCATAT
1 ATAACTTAT
*
10804863 CATAACTTAC
1 -ATAACTTAT
*
10804873 ATAACTTAC
1 ATAACTTAT
10804882 ATAA
1 ATAA
10804886 TACTTAAATA
Statistics
Matches: 120, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
7 8 0.07
8 19 0.16
9 76 0.63
10 10 0.08
11 7 0.06
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:10804752 original size:17 final size:17
Alignment explanation
Indices: 10804730--10804885 Score: 102
Period size: 17 Copynumber: 8.9 Consensus size: 17
10804720 GTACATAACT
*
10804730 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
10804747 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
10804765 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
**
10804780 TATAT-TTTATATCATAAA
1 TATATAACT-TA-CATAAA
* *
10804798 TTACATAACTTACATAACT
1 -TATATAACTTACATAA-A
*
10804817 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
10804834 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
10804851 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
10804870 TACATAACTTACATAA
1 TATATAACTTACATAA
10804886 TACTTAAATA
Statistics
Matches: 105, Mismatches: 24, Indels: 19
0.71 0.16 0.13
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.38
18 40 0.38
19 14 0.13
20 1 0.01
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:10810847 original size:31 final size:31
Alignment explanation
Indices: 10810801--10810867 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
10810791 TGGTTGTATT
* *
10810801 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
10810832 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
10810863 TTTTA
1 TTTTA
10810868 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:10810993 original size:43 final size:43
Alignment explanation
Indices: 10810945--10811205 Score: 432
Period size: 43 Copynumber: 6.0 Consensus size: 43
10810935 AAAAAGCGGA
* * *
10810945 GCTAAAAGCGTTGACATTTAGCGGCGCTTTTCCCGCAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
10810988 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
10811031 GCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
* *
10811075 GCTAAAAGCCTTGACCTTTAGCGGCACTTTTCCTACAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
*
10811118 GCTAAAAGCCTTAACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
*
10811161 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCCAATAAACGCC
1 GCTAAAAGCCTTGACCTTTAGCGGCGC-TTTTCCC-ACAAACGCC
10811206 ACAAATTTTT
Statistics
Matches: 205, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
43 147 0.72
44 50 0.24
45 8 0.04
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (43 bp):
GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCC
Found at i:10811071 original size:87 final size:86
Alignment explanation
Indices: 10810945--10811205 Score: 432
Period size: 87 Copynumber: 3.0 Consensus size: 86
10810935 AAAAAGCGGA
* * *
10810945 GCTAAAAGCGTTGACATTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAAGCCTTGACCTTTAGC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
10811010 GGCGCTTTTCCCACAAACGCC
66 GGCGCTTTTCCCACAAACGCC
10811031 GCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAG
1 GCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAG
* *
10811096 CGGCACTTTTCCTACAAACGCC
65 CGGCGCTTTTCCCACAAACGCC
*
10811118 GCTAAAAGCCTTAACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
1 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
*
10811183 GGCGCTTTTTCCCAATAAACGCC
66 GGCGC-TTTTCCC-ACAAACGCC
10811206 ACAAATTTTT
Statistics
Matches: 163, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
86 68 0.42
87 87 0.53
88 8 0.05
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (86 bp):
GCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
GGCGCTTTTCCCACAAACGCC
Found at i:10811156 original size:130 final size:131
Alignment explanation
Indices: 10810945--10811205 Score: 436
Period size: 130 Copynumber: 2.0 Consensus size: 131
10810935 AAAAAGCGGA
* * * *
10810945 GCTAAAAGCGTTGACATTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAAGCCTTGACCTTTAGC
1 GCTAAAAGCCTTGACATTTAGCGGCACTTTTCCCACAAACGCCGCTAAAAGCCTTAACCTTTAGC
10811010 GGCGCTTTTCCCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGC-TTTTCCC-ACAAACG
66 GGCGCTTTTCCCACAAACGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTTCCCAACAAACG
10811073 CC
130 CC
* *
10811075 GCTAAAAGCCTTGACCTTTAGCGGCACTTTTCCTACAAACGCCGCTAAAAGCCTTAACCTTTAGC
1 GCTAAAAGCCTTGACATTTAGCGGCACTTTTCCCACAAACGCCGCTAAAAGCCTTAACCTTTAGC
*
10811140 GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCCAATAAACGC
66 GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCCAACAAACGC
10811205 C
131 C
10811206 ACAAATTTTT
Statistics
Matches: 122, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
129 24 0.20
130 90 0.74
131 8 0.07
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (131 bp):
GCTAAAAGCCTTGACATTTAGCGGCACTTTTCCCACAAACGCCGCTAAAAGCCTTAACCTTTAGC
GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCCAACAAACGC
C
Found at i:10814729 original size:486 final size:485
Alignment explanation
Indices: 10813792--10814740 Score: 1345
Period size: 486 Copynumber: 2.0 Consensus size: 485
10813782 TGTCCCTCTA
* * *
10813792 TGTAAGATGTAGAATAGAAATTCGATGGCTGGGCAACTTTGCCGAGGTGGTCAATTTCTTATCGA
1 TGTAAGATGTAGAATAGAAATTCGAAGGCTGGGCAACTTTGCCGAGGTGATCAATTTCTTATCAA
* * *
10813857 TCTCCTCTTTTCCCTGTTGCCAAAATTATGTCTGGTCATGCTAGGCTCCTTAAGGATATAGACAT
66 TCTCCTCTTTTCCCTGTTGCCAAAATCATGTCTGGTCATGCTAGGCTACTTAAGGATATAAACAT
* *
10813922 TTTCTTGTTTTATTTCAATTGCCTATGGGACCTAAATTTTATTTAAAAAATACTATAAAGTGGCT
131 TTTC-T-TTTTATTTCAATTGCCCAAGGGACCTAAATTTTATTTAAAAAATACTATAAAGTGGCT
* * * *
10813987 GTTAGCCTCATGATTTCTTTTATCAAACAAGATTTAGAGTAGTTACCGTCGGAATTGTTTTTATC
194 GTTACCCTCATGATTACTTTTATCAAACAAGATCTAAAGTAGTTACCGTCGGAATTGTTTTTATC
* * ** **
10814052 AAATTATGGTAAAGTGGTTGTCACTCTGTAAGATGTAGGCTGGAATTTGAAGGATGGGCAACTTT
259 AAACTATCGTAAAGTGGTTGTCACTCTGTAAGATGTAGAATAAAATTTGAAGGATGGGCAACTTT
* * *
10814117 GCCGAGGTGGTCAATATCTTATGGATCACCTCTTTTCCCTGTTGCCAATATTATATCTGGTCTTG
324 GCCGAGGTGATCAATATCTTATGGATCACCTCTTTTCCCTGTTGCCAATACTATATCTGGTCATG
* *
10814182 CTAGGCTCCTTAAGGATATAAACATTTTCTTGTTTTATTCTAATTGCCCAAGGGACCTAAATTTT
389 CTAGGCTCCTTAAGGATATAAACAGTTTCTTGTTTTATTCCAATTGCCCAAGGGACCTAAATTTT
10814247 CTTTAAAAGTTACTATAAAGTGGCTGCCACTC
454 CTTTAAAAGTTACTATAAAGTGGCTGCCACTC
* * * *
10814279 TGTAAGGTGTAGAATAG-AATTTGAAGGCTGGGCAACTTTGCCGAGGTGATTAATTTCTTTTCAA
1 TGTAAGATGTAGAATAGAAATTCGAAGGCTGGGCAACTTTGCCGAGGTGATCAATTTCTTATCAA
* *
10814343 TCTCCTCTTTTCCCTGTTGCCAATATCATGTCTGGTCATGCTAGGC-ACTTGAGGATATAAACAT
66 TCTCCTCTTTTCCCTGTTGCCAAAATCATGTCTGGTCATGCTAGGCTACTTAAGGATATAAACAT
* *** * *
10814407 TTTC-TTTTATTTCCAATTGCCCAAGGGACCTAAATTTTCTTTAAAGCTTACCT-TGAAGTGGGT
131 TTTCTTTTTATTT-CAATTGCCCAAGGGACCTAAATTTTATTTAAAAAATA-CTATAAAGTGGCT
* **
10814470 GTTACCCTCATGATTACTTTTATCAAACTAGATCTAAAGTAGTTATCC-TCGGGCTTGTTTTTAT
194 GTTACCCTCATGATTACTTTTATCAAACAAGATCTAAAGTAGTTA-CCGTCGGAATTGTTTTTAT
* *
10814534 CAAACTATCGTGAAGTGGTTGTCACTCTATGTAAGATGTAGAATAAAAATTTGAAGGCTGGGCAA
258 CAAACTATCGTAAAGTGGTTGTCACTC--TGTAAGATGTAGAAT-AAAATTTGAAGGATGGGCAA
* * *
10814599 CTTTGCCGAGGTGATCAATTTCTTATCGG-TCTCCTCTTTTCCCTGTTGCCAATACTATGTCTGG
320 CTTTGCCGAGGTGATCAATATCTTAT-GGATCACCTCTTTTCCCTGTTGCCAATACTATATCTGG
* * *
10814663 TCATGCTAGGCTCCTTGAGGAGT-TAAACAGTTTCTTGTTTTATTCCAATTGCCTATGGGACCTA
384 TCATGCTAGGCTCCTTAAGGA-TATAAACAGTTTCTTGTTTTATTCCAATTGCCCAAGGGACCTA
10814727 AATTTTCTTTAAAA
448 AATTTTCTTTAAAA
10814741 ACTACCATAA
Statistics
Matches: 408, Mismatches: 46, Indels: 17
0.87 0.10 0.04
Matches are distributed among these distances:
482 8 0.02
483 117 0.29
484 4 0.01
485 32 0.08
486 228 0.56
487 19 0.05
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (485 bp):
TGTAAGATGTAGAATAGAAATTCGAAGGCTGGGCAACTTTGCCGAGGTGATCAATTTCTTATCAA
TCTCCTCTTTTCCCTGTTGCCAAAATCATGTCTGGTCATGCTAGGCTACTTAAGGATATAAACAT
TTTCTTTTTATTTCAATTGCCCAAGGGACCTAAATTTTATTTAAAAAATACTATAAAGTGGCTGT
TACCCTCATGATTACTTTTATCAAACAAGATCTAAAGTAGTTACCGTCGGAATTGTTTTTATCAA
ACTATCGTAAAGTGGTTGTCACTCTGTAAGATGTAGAATAAAATTTGAAGGATGGGCAACTTTGC
CGAGGTGATCAATATCTTATGGATCACCTCTTTTCCCTGTTGCCAATACTATATCTGGTCATGCT
AGGCTCCTTAAGGATATAAACAGTTTCTTGTTTTATTCCAATTGCCCAAGGGACCTAAATTTTCT
TTAAAAGTTACTATAAAGTGGCTGCCACTC
Found at i:10817062 original size:32 final size:32
Alignment explanation
Indices: 10817026--10817090 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
10817016 ACTCCACACT
*
10817026 TAATTTGATCATCAGAGCTGTGTAATATCATA
1 TAATTTGATCATCAAAGCTGTGTAATATCATA
**
10817058 TAATTTGATCATCAAATTTGTGTAATATCATA
1 TAATTTGATCATCAAAGCTGTGTAATATCATA
10817090 T
1 T
10817091 TATGTTGTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (32 bp):
TAATTTGATCATCAAAGCTGTGTAATATCATA
Found at i:10822307 original size:15 final size:15
Alignment explanation
Indices: 10822287--10822316 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10822277 AATGCAATGG
10822287 TAAAGATGGTATTTA
1 TAAAGATGGTATTTA
10822302 TAAAGATGGTATTTA
1 TAAAGATGGTATTTA
10822317 AGGGCACGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (15 bp):
TAAAGATGGTATTTA
Found at i:10853938 original size:18 final size:18
Alignment explanation
Indices: 10853890--10853982 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
10853880 CCCAACTACT
*
10853890 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* * *
10853908 GTATTCGTAAATAGTGCC
1 GTATACGTGAATAGTACC
* *
10853926 GTATACGTGAATAATACT
1 GTATACGTGAATAGTACC
* *
10853944 ATATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
10853962 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
10853980 GTA
1 GTA
10853983 AACGGTCGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:10878135 original size:18 final size:18
Alignment explanation
Indices: 10878112--10878149 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
10878102 ACATATGATG
10878112 CATCTTAAAGAAGCAATT
1 CATCTTAAAGAAGCAATT
10878130 CATCTTAAAGAAGCAATT
1 CATCTTAAAGAAGCAATT
10878148 CA
1 CA
10878150 ACTATCTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (18 bp):
CATCTTAAAGAAGCAATT
Found at i:10884104 original size:19 final size:19
Alignment explanation
Indices: 10884080--10884116 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10884070 GGATCAATAA
10884080 TTTTTAATCTAATAAAACT
1 TTTTTAATCTAATAAAACT
10884099 TTTTTAATCTAATAAAAC
1 TTTTTAATCTAATAAAAC
10884117 CAATCAGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTTTAATCTAATAAAACT
Found at i:10887706 original size:18 final size:19
Alignment explanation
Indices: 10887683--10887729 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
10887673 AAATGATTTA
10887683 ATGAAATTAATATAA-TAG
1 ATGAAATTAATATAATTAG
* * *
10887701 ATGAAATTTATTTAATTCG
1 ATGAAATTAATATAATTAG
10887720 ATGAAATTAA
1 ATGAAATTAA
10887730 AAGTAGATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
ATGAAATTAATATAATTAG
Found at i:10890540 original size:33 final size:33
Alignment explanation
Indices: 10890503--10890569 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
10890493 TTAATTTACC
*
10890503 TACATTTAGAGGGGCAAATTATGATGTATATAG
1 TACATTAAGAGGGGCAAATTATGATGTATATAG
10890536 TACATTAAGAGGGGCAAATTATGATGTATATAG
1 TACATTAAGAGGGGCAAATTATGATGTATATAG
10890569 T
1 T
10890570 TCTCATAGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (33 bp):
TACATTAAGAGGGGCAAATTATGATGTATATAG
Found at i:10892965 original size:62 final size:62
Alignment explanation
Indices: 10892889--10893016 Score: 238
Period size: 62 Copynumber: 2.1 Consensus size: 62
10892879 CCCCCTTTCC
*
10892889 ACAACTTTTTCATATCCAAACACTTCATTTAGATATAGGGTTTAGGGTTAGGGTTCCTTGGA
1 ACAACTTTTTCATATCCAAACACTTCATTTAGATATAGAGTTTAGGGTTAGGGTTCCTTGGA
*
10892951 ACAACTTTTTCATATCCAAACACTTCATTTAGATATAGAGTTTAGGGTTAGGGTTGCTTGGA
1 ACAACTTTTTCATATCCAAACACTTCATTTAGATATAGAGTTTAGGGTTAGGGTTCCTTGGA
10893013 ACAA
1 ACAA
10893017 AGCTAAAGGT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (62 bp):
ACAACTTTTTCATATCCAAACACTTCATTTAGATATAGAGTTTAGGGTTAGGGTTCCTTGGA
Found at i:10897339 original size:48 final size:48
Alignment explanation
Indices: 10897287--10897382 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
10897277 TTCTAGTTAG
10897287 TGTAAAAACAGCGGTGGTAGTGAGATTAAATACTATAGCGATATTATA
1 TGTAAAAACAGCGGTGGTAGTGAGATTAAATACTATAGCGATATTATA
*
10897335 TGTAAAAACAGCGGTGGTGGTGAGATTAAATACTATAGCGATATTATA
1 TGTAAAAACAGCGGTGGTAGTGAGATTAAATACTATAGCGATATTATA
10897383 GCATGAAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (48 bp):
TGTAAAAACAGCGGTGGTAGTGAGATTAAATACTATAGCGATATTATA
Found at i:10898886 original size:62 final size:61
Alignment explanation
Indices: 10898811--10899014 Score: 239
Period size: 62 Copynumber: 3.2 Consensus size: 61
10898801 GTTGGGTTTT
* * * *
10898811 GAATTGAAAGCAAATATTGGGTTAATTGACCTAAAGATCCCTCTTTTCTGCTTGAATTTATG
1 GAATTGAAGGCAAATGTTGGGTAAATTGACCTAAAGATCCCTCTTTT-TGGTTGAATTTATG
* * * *
10898873 GAATTGAAGGCAAATGTTAGGTAAATTGACCT-AAGGTTCCTCTTTTTTGGTTGAATTTTTTGG
1 GAATTGAAGGCAAATGTTGGGTAAATTGACCTAAAGATCCCTC-TTTTTGGTTGAA-TTTAT-G
* *
10898936 GTAAATTGAAGGCAAATGTTGGGTAAATATGACCTAAAGTTCCCTCTTCTTTGGTTGAATTTATT
1 G--AATTGAAGGCAAATGTTGGGTAAAT-TGACCTAAAGATCCCTCTT-TTTGGTTGAATTTATG
10899001 GAATTGAAGGCAAA
1 GAATTGAAGGCAAA
10899015 GAATGTATGC
Statistics
Matches: 121, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
61 15 0.12
62 36 0.30
63 15 0.12
65 25 0.21
66 12 0.10
67 18 0.15
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (61 bp):
GAATTGAAGGCAAATGTTGGGTAAATTGACCTAAAGATCCCTCTTTTTGGTTGAATTTATG
Found at i:10901719 original size:17 final size:17
Alignment explanation
Indices: 10901699--10901732 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10901689 AAGAGTTCAT
10901699 CTAATTTACATTAGATG
1 CTAATTTACATTAGATG
10901716 CTAATTTACATTAGATG
1 CTAATTTACATTAGATG
10901733 ACAAAGCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
CTAATTTACATTAGATG
Found at i:10907740 original size:18 final size:18
Alignment explanation
Indices: 10907676--10907742 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 18
10907666 TTAGTCCTTA
*
10907676 AATTTGGTATTTTTTTTT
1 AATTTGGTAATTTTTTTT
* **
10907694 AATTTGGTCGACATTAGTCTTGC
1 AATTTGGT--A-ATT--TTTTTT
10907717 AATTTGGTAATTTTTTTT
1 AATTTGGTAATTTTTTTT
10907735 AATTTGGT
1 AATTTGGT
10907743 CCTTGAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
18 19 0.51
20 4 0.11
21 3 0.08
23 11 0.30
ACGTcount: A:0.21, C:0.06, G:0.16, T:0.57
Consensus pattern (18 bp):
AATTTGGTAATTTTTTTT
Found at i:10910037 original size:21 final size:20
Alignment explanation
Indices: 10910004--10910042 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10909994 ATATCTAAAT
*
10910004 AATTTTTTATTGATTTTTTA
1 AATTTTTTATTGAATTTTTA
10910024 AATTTTTTACTTGAATTTT
1 AATTTTTTA-TTGAATTTT
10910043 CTTTGACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (20 bp):
AATTTTTTATTGAATTTTTA
Found at i:10912834 original size:139 final size:137
Alignment explanation
Indices: 10912564--10912889 Score: 602
Period size: 139 Copynumber: 2.4 Consensus size: 137
10912554 GTGTTAGTGG
10912564 TATCAATTATGTTAAAGTTTTGATCTTTGCTTATGTAGGTATCAATTTGTTACCTTACACTGTTA
1 TATCAATTATG-TAAAGTTTTGATCTTTGCTTATGTAGGTATCAATTTGTTACCTTACACTGTTA
10912629 AAAATGTAGAAAATTGGCACTGATTGAGTGCATTTTGTTAATGTTTTGAGAGTTACATTGATTTC
65 AAAATGTAGAAAATTGGCACTGATTGAGTGCATTTTGTTAATGTTTTGAGAGTTACATTGATTTC
10912694 ATGGCTGT
130 ATGGCTGT
10912702 TATCAATTATGCTAAAGTTTTGATCTTTGCTTATGTAGGTATCAATTTGTTACCTTACACTGTTA
1 TATCAATTATG-TAAAGTTTTGATCTTTGCTTATGTAGGTATCAATTTGTTACCTTACACTGTT-
10912767 AAAAATGTAGAAAATTGGCACTGATTGAGTGCATTTTGTTAATGTTTTGAGAGTTACATTGATTT
64 AAAAATGTAGAAAATTGGCACTGATTGAGTGCATTTTGTTAATGTTTTGAGAGTTACATTGATTT
10912832 CATGGCTGT
129 CATGGCTGT
*
10912841 TATCAATTATG--AAGTTTTGATCTTTGCTTATATAGGTATCAATTTGTTA
1 TATCAATTATGTAAAGTTTTGATCTTTGCTTATGTAGGTATCAATTTGTTA
10912890 AAATGTGGAA
Statistics
Matches: 185, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
136 37 0.20
138 63 0.34
139 85 0.46
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (137 bp):
TATCAATTATGTAAAGTTTTGATCTTTGCTTATGTAGGTATCAATTTGTTACCTTACACTGTTAA
AAATGTAGAAAATTGGCACTGATTGAGTGCATTTTGTTAATGTTTTGAGAGTTACATTGATTTCA
TGGCTGT
Found at i:10923021 original size:13 final size:13
Alignment explanation
Indices: 10923003--10923027 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10922993 AAAATCCAAC
10923003 TAAAACACTGAAT
1 TAAAACACTGAAT
10923016 TAAAACACTGAA
1 TAAAACACTGAA
10923028 AAAACAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (13 bp):
TAAAACACTGAAT
Found at i:10924143 original size:60 final size:59
Alignment explanation
Indices: 10924045--10924162 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 59
10924035 AATAGTTGGG
* **
10924045 TAATTATTTTATAACTTTTCATAATTGGGTGACTAAAAATAAAATTTACTAATAATTGAA
1 TAATTATTTTATAAATTTTCATAATTAAGTGACTAAAAAT-AAATTTACTAATAATTGAA
* * * *
10924105 TAATTATTTTATAAATTTTCATAGTTAAGTG-GTCAAAAATAAATTTATTAATAGTTGA
1 TAATTATTTTATAAATTTTCATAATTAAGTGACT-AAAAATAAATTTACTAATAATTGA
10924163 GTGACTATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 17 0.34
60 33 0.66
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.43
Consensus pattern (59 bp):
TAATTATTTTATAAATTTTCATAATTAAGTGACTAAAAATAAATTTACTAATAATTGAA
Found at i:10930212 original size:108 final size:109
Alignment explanation
Indices: 10930012--10930227 Score: 326
Period size: 108 Copynumber: 2.0 Consensus size: 109
10930002 TAAACCCCCC
* *
10930012 TAAAGAAGGTTTTTGGATATGTATATAAGGGGAGTTTTTTGAGTTGGATTCCAGATAACCAGAAC
1 TAAAGAAGGTTTTTGGATATGTATATAAGGGGAGTTTTTGGAGTTGAATTCCAGATAACCAGAAC
* *
10930077 GGGTTGGACTTCAGGTCGAGTTATGATATATTTTGTTATAATTA
66 GGGTTAGACTTCAGGTCGAGTTATGATATATTTTATTATAATTA
* * * * **
10930121 TAAAGAGGGTTTTTGGATATGTATATAAGGGGAGTTTTTGGA-TTGAATTCTAGGTCACCAGAGT
1 TAAAGAAGGTTTTTGGATATGTATATAAGGGGAGTTTTTGGAGTTGAATTCCAGATAACCAGAAC
*
10930185 GGGTTAGACTTCGGGTCGAGTTATGATATATTTTATTATAATT
66 GGGTTAGACTTCAGGTCGAGTTATGATATATTTTATTATAATT
10930228 CTATAAAATC
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
108 56 0.58
109 40 0.42
ACGTcount: A:0.28, C:0.07, G:0.26, T:0.38
Consensus pattern (109 bp):
TAAAGAAGGTTTTTGGATATGTATATAAGGGGAGTTTTTGGAGTTGAATTCCAGATAACCAGAAC
GGGTTAGACTTCAGGTCGAGTTATGATATATTTTATTATAATTA
Found at i:10931817 original size:22 final size:22
Alignment explanation
Indices: 10931792--10931838 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
10931782 TTGTATATAT
10931792 AAATAAAGAAG-TTATTAATTAA
1 AAAT-AAGAAGTTTATTAATTAA
* *
10931814 AAATATGATGTTTATTAATTAA
1 AAATAAGAAGTTTATTAATTAA
10931836 AAA
1 AAA
10931839 CATTAATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
AAATAAGAAGTTTATTAATTAA
Found at i:10931906 original size:3 final size:3
Alignment explanation
Indices: 10931894--10931935 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
10931884 AGAATTTCTG
10931894 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10931936 TTTCCATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:10936701 original size:15 final size:16
Alignment explanation
Indices: 10936681--10936718 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10936671 CTTTGATTCT
10936681 TTTATTATT-TGTAAA
1 TTTATTATTGTGTAAA
*
10936696 TTTATTATTGTTTAAA
1 TTTATTATTGTGTAAA
*
10936712 TTAATTA
1 TTTATTA
10936719 ATTAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTATTATTGTGTAAA
Found at i:10941522 original size:30 final size:31
Alignment explanation
Indices: 10941488--10941551 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 31
10941478 TTTTTATAAT
* *
10941488 TATATT-TAAAGTATATTGTATAAATTTTGA
1 TATATTATAAAGTATATTATATAAAATTTGA
* *
10941518 TATATTAATAAATTATTTTATATAAAATTTGA
1 TATATT-ATAAAGTATATTATATAAAATTTGA
10941550 TA
1 TA
10941552 AAATAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.21
32 22 0.79
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (31 bp):
TATATTATAAAGTATATTATATAAAATTTGA
Done.