Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 370 of 770
Found at i:113797263 original size:80 final size:79
Alignment explanation
Indices: 113797127--113797344 Score: 206
Period size: 80 Copynumber: 2.7 Consensus size: 79
113797117 CGAATGGTGT
* * * *
113797127 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCGAAGGCAATTG
* *
113797192 TGCGAGTTACCAAAA
65 TGCGAATCACCAAAA
* * * *
113797207 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACT-CCGAAGGCAATT
* *
113797271 GTGCGAATCACTATAA
64 GTGCGAATCACCAAAA
* * * * * * * *
113797287 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCG-CTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT-GACTAAATCCGGGTCAACTCCGAAGG
113797345 TACGTGATTC
Statistics
Matches: 112, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
78 1 0.01
79 24 0.21
80 87 0.78
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCGAAGGCAATTGT
GCGAATCACCAAAA
Found at i:113797325 original size:40 final size:40
Alignment explanation
Indices: 113797247--113797330 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
113797237 GTTATTAAAT
* * *
113797247 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
113797287 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
113797327 CCGG
1 CCGG
113797331 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:113805281 original size:39 final size:40
Alignment explanation
Indices: 113805179--113805357 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
113805169 TCGAATGGTG
* * *
113805179 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
113805220 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
113805260 ACCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
113805299 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
113805340 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
113805358 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 33 0.29
40 53 0.46
41 28 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:113805314 original size:79 final size:81
Alignment explanation
Indices: 113805180--113805357 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 81
113805170 CGAATGGTGT
* * *
113805180 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
113805245 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * * *
113805261 CCGGGTTAAGT-CCGAAGGCATTCGTGC-GAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAAT
* * * *
113805323 TGTGCGAATCACTATAA
65 TGTGCGAGTTACCAAAA
*
113805340 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
113805358 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
79 50 0.62
80 20 0.25
81 10 0.12
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:113805378 original size:40 final size:40
Alignment explanation
Indices: 113805300--113805383 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
113805290 GTTATTAAAT
* * *
113805300 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
113805340 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
113805380 CCGG
1 CCGG
113805384 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:113812289 original size:71 final size:71
Alignment explanation
Indices: 113812205--113812368 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
113812195 CGATTTGTCT
113812205 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
113812270 CTTTCA
66 CTTTCA
113812276 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
113812341 CTTTCA
66 CTTTCA
113812347 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
113812369 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:113812406 original size:71 final size:70
Alignment explanation
Indices: 113812205--113812402 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
113812195 CGATTTGTCT
* * * *
113812205 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
113812270 CTTTCA
65 CTTTCA
* * * *
113812276 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
113812341 CTTTCA
65 CTTTCA
* *
113812347 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
113812403 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:113819414 original size:43 final size:41
Alignment explanation
Indices: 113819271--113819424 Score: 141
Period size: 43 Copynumber: 3.7 Consensus size: 41
113819261 ATCGCATACA
* * * * *
113819271 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCATATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCATATAT-G
** * *
113819313 ATGCCTCTGCCCCAGACAAGGTCTTACACGAATCATATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCATATATG
* *
113819354 ATGCCAATGTCCTAGACATGGTCTTACACATAATC-TCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-GAATCAT-ATAT-G
*
113819397 ATGTCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
113819425 TGAAATCACA
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
41 25 0.27
42 22 0.24
43 45 0.49
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCATATATG
Found at i:113822135 original size:45 final size:45
Alignment explanation
Indices: 113822052--113822142 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
113822042 CCAAAACATG
* * * *
113822052 TGTTACATACATCTTGAACTTAGATCACAACTCCATGAGCTCAGA
1 TGTTACATACATCATGAACTCAGACCACAACTCAATGAGCTCAGA
* * * *
113822097 TGTTACATATATCATGAACTCAGACCATAACTTAATGAGTTCAGA
1 TGTTACATACATCATGAACTCAGACCACAACTCAATGAGCTCAGA
113822142 T
1 T
113822143 CACATAGTTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (45 bp):
TGTTACATACATCATGAACTCAGACCACAACTCAATGAGCTCAGA
Found at i:113826651 original size:30 final size:29
Alignment explanation
Indices: 113826615--113826674 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
113826605 ATGGATCGGA
*
113826615 AGCTTTGGCACTAACTGTGCGATTTACACT
1 AGCTTTGGCACTAACTGTGCAATTTA-ACT
*
113826645 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTGGCACTAACTGTGCAATTTAACT
113826674 A
1 A
113826675 ACTTCGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAACTGTGCAATTTAACT
Found at i:113837560 original size:22 final size:22
Alignment explanation
Indices: 113837535--113837578 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
113837525 CAAATTTGTG
*
113837535 AAAAATTATTATATAAATAATT
1 AAAAATTAATATATAAATAATT
* * *
113837557 AAAATTTAATATGTTAATAATT
1 AAAAATTAATATATAAATAATT
113837579 TAAGTGCAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AAAAATTAATATATAAATAATT
Found at i:113837589 original size:27 final size:27
Alignment explanation
Indices: 113837559--113837610 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
113837549 AAATAATTAA
*
113837559 AATTTAA-TATGTTAATAATTTAAGTGC
1 AATTTAATTAT-TTAATAATTAAAGTGC
*
113837586 AATTTAATTATTTTATAATTAAAGT
1 AATTTAATTATTTAATAATTAAAGT
113837611 ATGAATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (27 bp):
AATTTAATTATTTAATAATTAAAGTGC
Found at i:113842904 original size:50 final size:49
Alignment explanation
Indices: 113842772--113842957 Score: 214
Period size: 50 Copynumber: 3.8 Consensus size: 49
113842762 CGAAGCTATC
* * * *
113842772 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-TCAA-AAA
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACTCAACATA
* * * * *
113842819 TCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCATCATT
1 T--GATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CTCAACATA
* *
113842871 TGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAATA
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACTCAAC-ATA
*
113842921 TGATACACGTAGTAGCCTACACTTAGTACTACACACG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACG
113842958 TGTATTCACA
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
47 1 0.01
49 37 0.32
50 72 0.63
51 3 0.03
52 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACTCAACATA
Found at i:113849043 original size:40 final size:40
Alignment explanation
Indices: 113848987--113849088 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
113848977 GGATATAGCG
* * *
113848987 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGTTATAATA
* * * **
113849027 GCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGTTATAATA
*
113849067 ACTCGCACAAATGACTTCGGGA
1 ACTCGCACAAATGCCTTCGGGA
113849089 ATTGACCCGG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGTTATAATA
Found at i:113849128 original size:41 final size:40
Alignment explanation
Indices: 113849031--113849129 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
113849021 ATAATAGCTC
* * * *
113849031 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTA
* * *
113849071 GCACAAATGACTTCGGGAATTGACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAAC-TA
*
113849112 GCACAAAAGCCTTCGGGA
1 GCACAAATGCCTTCGGGA
113849130 CTTAGCCTGG
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 32 0.65
41 17 0.35
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTA
Found at i:113854559 original size:45 final size:45
Alignment explanation
Indices: 113854474--113854560 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
113854464 AACATTTGTC
* * *
113854474 ACATACATCATGAACTCAGACCACAACTCCATGAGCTCAGATGTT
1 ACATACATCATAAACTCAGACCACAACTCAAAGAGCTCAGATGTT
* * * *
113854519 ACATATATCATAAACTTAGACCATAACTCAAAGAGTTCAGAT
1 ACATACATCATAAACTCAGACCACAACTCAAAGAGCTCAGAT
113854561 CACATAGTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.24
Consensus pattern (45 bp):
ACATACATCATAAACTCAGACCACAACTCAAAGAGCTCAGATGTT
Found at i:113859078 original size:30 final size:29
Alignment explanation
Indices: 113859044--113859107 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
113859034 ATGGATCGGA
* *
113859044 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACGAAGTGTACGATTT-AACT
113859074 AGCTTTGGCACGAAGTGTACGATTTAACT
1 AGCTTTGGCACGAAGTGTACGATTTAACT
113859103 AGCTT
1 AGCTT
113859108 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACGAAGTGTACGATTTAACT
Found at i:113867076 original size:409 final size:409
Alignment explanation
Indices: 113866317--113867138 Score: 1473
Period size: 409 Copynumber: 2.0 Consensus size: 409
113866307 TAACTAGCTC
*
113866317 CGGCTACTTGAGGCACTAAGTGTGCGATACCGACTTAGTCTCGGTTATTCGAGATGGCACTAAGT
1 CGGCTACTTGAGGCACTAAGTGTACGATACCGACTTAGTCTCGGTTATTCGAGATGGCACTAAGT
* * * *
113866382 ATGCGGAAATATTTAACTTCGGCTATCCTTATAGCACTAAGTGGGGTGATGTGTAAAACACGAAT
66 ATGCGAAAATATTTAACTTCGACTAACCTTATAGCACTAAGTGGGGTGATGTGTAAAACACAAAT
113866447 AACTTAGGGAAAGTCTTATAACATTCATCATGAGGTAAGTACAAAAGTGAATAAGTACGGGAAGC
131 AACTTAGGGAAAGTCTTATAACATTCATCATGAGGTAAGTACAAAAGTGAATAAGTACGGGAAGC
113866512 TTCAGGTATGTATAATGCCTAAGTGGTAGAAGATGTTATATATATGAATCATTGAATTGATATAG
196 TTCAGGTATGTATAATGCCTAAGTGGTAGAAGATGTTATATATATGAATCATTGAATTGATATAG
*
113866577 TTATATGGATTGAAATTGTGCAAATACTCATAGGTTATCATTTTATGTTTATATACTATGAATTT
261 TTATATGGATTGAAATTGTGCAAATACTCATAGGTTATCATTTTATGTTTATATACTATGAATGT
*
113866642 TTTGAGTACGAGCTCACTAAGCTTTTGAAAGCTTACTCTGTGTGATTACTGTCTGTTTTACAGTT
326 TTTGAGCACGAGCTCACTAAGCTTTTGAAAGCTTACTCTGTGTGATTACTGTCTGTTTTACAGTT
*
113866707 TTCGTAGCTACTAAAGGCT
391 ATCGTAGCTACTAAAGGCT
113866726 CGGCTACTTGAGGCACTAAGTGTACGATACCGACTTAGTCTCGGTTATTCGAGATGGCACTAAGT
1 CGGCTACTTGAGGCACTAAGTGTACGATACCGACTTAGTCTCGGTTATTCGAGATGGCACTAAGT
* * * * *
113866791 GTGTGAAAATATTTAACTTTGACTAACCTTATAGCATTAAGTGTGGTGATGTGTAAAACACAAAT
66 ATGCGAAAATATTTAACTTCGACTAACCTTATAGCACTAAGTGGGGTGATGTGTAAAACACAAAT
* *
113866856 AACTTATGGAAAGTCTTATAACATTCATCATGAGGTAAGTACAAAAGTGAATAAGTACGGGAGGC
131 AACTTAGGGAAAGTCTTATAACATTCATCATGAGGTAAGTACAAAAGTGAATAAGTACGGGAAGC
*
113866921 TTCAGGTATGTATAATGCCTAAGTGGTAGATGATGTTATATATATGAATCATTGAATTGATATAG
196 TTCAGGTATGTATAATGCCTAAGTGGTAGAAGATGTTATATATATGAATCATTGAATTGATATAG
113866986 TTATATGGATTGAAATTGTGCAAATACTCATAGGTTATCATTTTATGTTTATATACTATGAATGT
261 TTATATGGATTGAAATTGTGCAAATACTCATAGGTTATCATTTTATGTTTATATACTATGAATGT
** *
113867051 TTTGAGCACGAGCTTGCTAAGCTTTTGAAAGCTTACTCTGTGTGATTACTGTTTGTTTTACAGTT
326 TTTGAGCACGAGCTCACTAAGCTTTTGAAAGCTTACTCTGTGTGATTACTGTCTGTTTTACAGTT
113867116 ATCGTAGCTACTAAAGGCT
391 ATCGTAGCTACTAAAGGCT
113867135 CGGC
1 CGGC
113867139 AATAGTCAAG
Statistics
Matches: 394, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
409 394 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (409 bp):
CGGCTACTTGAGGCACTAAGTGTACGATACCGACTTAGTCTCGGTTATTCGAGATGGCACTAAGT
ATGCGAAAATATTTAACTTCGACTAACCTTATAGCACTAAGTGGGGTGATGTGTAAAACACAAAT
AACTTAGGGAAAGTCTTATAACATTCATCATGAGGTAAGTACAAAAGTGAATAAGTACGGGAAGC
TTCAGGTATGTATAATGCCTAAGTGGTAGAAGATGTTATATATATGAATCATTGAATTGATATAG
TTATATGGATTGAAATTGTGCAAATACTCATAGGTTATCATTTTATGTTTATATACTATGAATGT
TTTGAGCACGAGCTCACTAAGCTTTTGAAAGCTTACTCTGTGTGATTACTGTCTGTTTTACAGTT
ATCGTAGCTACTAAAGGCT
Found at i:113874329 original size:43 final size:42
Alignment explanation
Indices: 113874267--113874422 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
113874257 ATAGGATTCT
* *
113874267 GATATGTGATTTCGTGTAAGACCACATCTGGGACATTGGCATC
1 GATAT-TGATTACATGTAAGACCACATCTGGGACATTGGCATC
** *
113874310 GAT-TTGAGATTACATGTAAGACCATGTCTGGGACATCGGCATC
1 GATATT--GATTACATGTAAGACCACATCTGGGACATTGGCATC
* * * *
113874353 G-TATTGATTTCATGTAAGACC-CTGTCTGGGATAGTGGCATC
1 GATATTGATTACATGTAAGACCAC-ATCTGGGACATTGGCATC
113874394 GATATTCGATTACATGTAAGACCACATCT
1 GATATT-GATTACATGTAAGACCACATCT
113874423 ACAATGTTGG
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 32 0.34
42 6 0.06
43 55 0.59
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
GATATTGATTACATGTAAGACCACATCTGGGACATTGGCATC
Found at i:113875298 original size:28 final size:28
Alignment explanation
Indices: 113875266--113875327 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
113875256 CACGGGTAGA
113875266 GACACAGGTGTGTGTCTCAGCCATGTGC
1 GACACAGGTGTGTGTCTCAGCCATGTGC
113875294 GACACAGGTGTGTGTCTCAGCCATGTGC
1 GACACAGGTGTGTGTCTCAGCCATGTGC
113875322 GACACA
1 GACACA
113875328 CGGTCATGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (28 bp):
GACACAGGTGTGTGTCTCAGCCATGTGC
Found at i:113877095 original size:2 final size:2
Alignment explanation
Indices: 113877088--113877114 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
113877078 GAGACTAGTC
113877088 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
113877115 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:113878061 original size:33 final size:33
Alignment explanation
Indices: 113878024--113878087 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
113878014 CTTGTTTATA
113878024 ACCTTACCACATCCTGGTCACTTAATGAACATC
1 ACCTTACCACATCCTGGTCACTTAATGAACATC
113878057 ACCTTACCACATCCTGGTCACTTAATGAACA
1 ACCTTACCACATCCTGGTCACTTAATGAACA
113878088 CATCATTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.33, G:0.09, T:0.27
Consensus pattern (33 bp):
ACCTTACCACATCCTGGTCACTTAATGAACATC
Found at i:113882538 original size:19 final size:18
Alignment explanation
Indices: 113882514--113882549 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
113882504 CACATCCTGG
113882514 TCACTTAATGAACCACATA
1 TCACTTAATGAA-CACATA
113882533 TCACTTAATGAACACAT
1 TCACTTAATGAACACAT
113882550 CATTCACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.25, G:0.06, T:0.28
Consensus pattern (18 bp):
TCACTTAATGAACACATA
Found at i:113883641 original size:30 final size:30
Alignment explanation
Indices: 113883607--113883667 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
113883597 TCCTTAACTC
113883607 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
113883637 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
113883667 A
1 A
113883668 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:113887944 original size:40 final size:39
Alignment explanation
Indices: 113887880--113888065 Score: 214
Period size: 39 Copynumber: 4.8 Consensus size: 39
113887870 GCTACTCGTT
* * * ** *
113887880 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
113887920 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
113887960 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * *
113887999 CAATTGCCTTCGGGCTTAGCCCGG--ATCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
113888036 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
113888066 CTCGAACATT
Statistics
Matches: 130, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
37 34 0.26
39 51 0.39
40 45 0.35
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:113887995 original size:39 final size:39
Alignment explanation
Indices: 113887916--113888066 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
113887906 TATGGTAACC
* *
113887916 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
113887956 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
113887995 CGCACAATTGCCTTCGGGCTTAGCCCGG--ATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
113888032 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
113888067 TCGAACATTA
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
37 34 0.33
39 52 0.50
40 17 0.17
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:113888050 original size:76 final size:78
Alignment explanation
Indices: 113887885--113888065 Score: 249
Period size: 76 Copynumber: 2.3 Consensus size: 78
113887875 TCGTTCAAAC
* * **
113887885 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGA-ATC
113887950 ACAACTCGCACAATT
64 ACAACTCGCACAATT
* * *
113887965 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-ATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGAATCAC
* *
113888028 AATTTGCACAATT
66 AACTCGCACAATT
113888041 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
113888066 CTCGAACATT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
76 41 0.45
78 9 0.10
79 33 0.36
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGAATCAC
AACTCGCACAATT
Found at i:113895964 original size:40 final size:39
Alignment explanation
Indices: 113895900--113896087 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
113895890 GCTACTCGTT
* * * ** *
113895900 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
113895940 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
113895980 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
113896019 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
113896058 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
113896088 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:113896015 original size:39 final size:39
Alignment explanation
Indices: 113895936--113896088 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
113895926 TATGGTAACC
* *
113895936 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
113895976 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
113896015 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
113896054 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
113896089 TCGAACATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:113896066 original size:78 final size:79
Alignment explanation
Indices: 113895905--113896087 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
113895895 TCGTTCAAAC
* * **
113895905 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
113895970 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
113895985 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
113896049 CAATTTGCACAATT
66 CAACTCGCACAATT
113896063 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
113896088 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:113899733 original size:8 final size:8
Alignment explanation
Indices: 113899715--113899744 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
113899705 GTTGAAATTA
113899715 TGTGTATTT
1 TGTG-ATTT
113899724 TGTGATTT
1 TGTGATTT
113899732 TGTGATTT
1 TGTGATTT
113899740 TGTGA
1 TGTGA
113899745 AATAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:113900131 original size:40 final size:40
Alignment explanation
Indices: 113900066--113900141 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
113900056 GATTATGTTA
* * *
113900066 GGCACTAAGTGTTCGATTTAAAATAGCTTCGGCTATAAAT
1 GGCACTAAGTGTTCAAATTAAAATAGCTTCAGCTATAAAT
**
113900106 GGCACTAAGTGTTCAAATTGGAATAGCTTCAGCTAT
1 GGCACTAAGTGTTCAAATTAAAATAGCTTCAGCTAT
113900142 CTGAGGCACT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (40 bp):
GGCACTAAGTGTTCAAATTAAAATAGCTTCAGCTATAAAT
Found at i:113901489 original size:40 final size:39
Alignment explanation
Indices: 113901431--113901513 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 39
113901421 TGACTTATCC
* **
113901431 GCTAAAATGGCTCTTAGTGTGCGGTTTGAAATAGCTTCG
1 GCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCTTCG
* *
113901470 GCTAAAAGTGGCACTTAGTGTTCAATTTGAGATAGCTTCG
1 GCTAAAA-TGGCACTTAGTGTGCAATTTGAAATAGCTTCG
113901510 GCTA
1 GCTA
113901514 TATATATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
39 7 0.18
40 31 0.82
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (39 bp):
GCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCTTCG
Found at i:113902748 original size:54 final size:54
Alignment explanation
Indices: 113902689--113902800 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
113902679 TACTGAAATG
*
113902689 CCCTCAAATTGTAAAATTACCA-AAGTACCCTCAATTTATAGAATTA-TCGTTTTA
1 CCCTCAAATTATAAAATTA-CAGAAGTACCCTCAATTTATAGAATTACT-GTTTTA
* * *** *
113902743 CCCTCAATTTATAGAATTACAGTTTTACCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCAAATTATAAAATTACAGAAGTACCCTCAATTTATAGAATTACTGTTTTA
113902797 CCCT
1 CCCT
113902801 TGATTTACAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
53 2 0.04
54 46 0.94
55 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.38
Consensus pattern (54 bp):
CCCTCAAATTATAAAATTACAGAAGTACCCTCAATTTATAGAATTACTGTTTTA
Found at i:113902844 original size:27 final size:27
Alignment explanation
Indices: 113902714--113902844 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
113902704 ATTACCAAAG
* *
113902714 TACCCTCAATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
113902741 TACCCTCAATTTATAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
113902768 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
113902795 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
113902822 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
113902845 ATAATACCCT
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:113902852 original size:27 final size:27
Alignment explanation
Indices: 113902768--113902885 Score: 110
Period size: 27 Copynumber: 4.4 Consensus size: 27
113902758 ATTACAGTTT
* * * **
113902768 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATAA
* * * **
113902795 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATAA
113902822 TACCCTCGATTTACAAAATTACTATAA
1 TACCCTCGATTTACAAAATTACTATAA
* * * *
113902849 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTATAA
113902876 TACCCTCGAT
1 TACCCTCGAT
113902886 CAGTAAAATT
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATAA
Found at i:113902853 original size:54 final size:54
Alignment explanation
Indices: 113902749--113902870 Score: 163
Period size: 54 Copynumber: 2.3 Consensus size: 54
113902739 TTTACCCTCA
* * * * **
113902749 ATTTATAGAATTACAGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
*
113902803 ATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
1 ATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
* *
113902857 GTTTACAAAATTAC
1 ATTTACAGAATTAC
113902871 CAAAATACCC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (54 bp):
ATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATAATACCCTTG
Found at i:113902869 original size:81 final size:81
Alignment explanation
Indices: 113902722--113902870 Score: 176
Period size: 81 Copynumber: 1.8 Consensus size: 81
113902712 AGTACCCTCA
* * * ** * *
113902722 ATTTATAGAATTATCGTTTTACCCTCAATTTATAGAATTACAGTTTTACCCTCGATTTATAGAAT
1 ATTTACAGAATTATCGTTTTACCCTCAATTTACAAAATTACAGTAATACCCTCGATTTACAAAAT
113902787 TACTGTTTTACCCTTG
66 TACTGTTTTACCCTTG
* * *
113902803 ATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTA-TAATACCCTTGGTTTACAAA
1 ATTTACAGAATTATC-GTTTTACCCTCAATTTACAAAATTAC-AGTAATACCCTCGATTTACAAA
113902866 ATTAC
64 ATTAC
113902871 CAAAATACCC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
80 1 0.02
81 54 0.96
82 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.42
Consensus pattern (81 bp):
ATTTACAGAATTATCGTTTTACCCTCAATTTACAAAATTACAGTAATACCCTCGATTTACAAAAT
TACTGTTTTACCCTTG
Found at i:113902880 original size:54 final size:54
Alignment explanation
Indices: 113902768--113902885 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 54
113902758 ATTACAGTTT
* * * ** * *****
113902768 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATAATACCCTTGATTTACAAAATTACCAAAA
*
113902822 TACCCTCGATTTACAAAATTACTATAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTATAATACCCTTGATTTACAAAATTACCAAAA
113902876 TACCCTCGAT
1 TACCCTCGAT
113902886 CAGTAAAATT
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATAATACCCTTGATTTACAAAATTACCAAAA
Found at i:113902893 original size:27 final size:27
Alignment explanation
Indices: 113902822--113903068 Score: 223
Period size: 27 Copynumber: 9.2 Consensus size: 27
113902812 ATTACTGTTT
** * *
113902822 TACCCTCGATTTACAAAATTACTATAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
113902849 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
113902876 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
113902903 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
113902929 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
113902956 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
113902983 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
113903010 TACCACTAG-TTTGTGAAATTATCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
113903037 TACCCTCAATTTGTAAAATTATCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
113903064 TACCC
1 TACCC
113903069 CTGATTTACA
Statistics
Matches: 182, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 24 0.13
27 155 0.85
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:113902907 original size:81 final size:80
Alignment explanation
Indices: 113902822--113903090 Score: 274
Period size: 81 Copynumber: 3.3 Consensus size: 80
113902812 ATTACTGTTT
* ** * * *
113902822 TACCCTCGATTTACAAAATTACTATAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCTCGATTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATT
*
113902887 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** *
113902903 TACCCTAG-TCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATT
1 TACCCTCGATTTACAAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATACCCTCAATT
113902967 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * * * *
113902983 TACCCT-TAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTATCGAAATACCCTCAAT
1 TACCCTCGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAAT
*
113903047 TTGTAAAATTATCAAAA
64 TTGTAAAATTACCAAAA
* *
113903064 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
113903091 AAACCCTTGA
Statistics
Matches: 157, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
80 65 0.41
81 91 0.58
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:113903245 original size:27 final size:26
Alignment explanation
Indices: 113903211--113903304 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 26
113903201 ATACCCCTAT
113903211 TAGGTAAA-TAGACCGTAAAGCCCCTG
1 TAGGTAAAGT-GACCGTAAAGCCCCTG
* *
113903237 TAGGATAAAGTGACCATAAAGCCCTTG
1 TAGG-TAAAGTGACCGTAAAGCCCCTG
*
113903264 TAGGGTAAAGTGACCGTAATA-CCCTTG
1 TA-GGTAAAGTGACCGTAA-AGCCCCTG
*
113903291 TATGGTAAAATGAC
1 TA-GGTAAAGTGAC
113903305 GAATTTGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.07
27 51 0.86
28 4 0.07
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
TAGGTAAAGTGACCGTAAAGCCCCTG
Found at i:113904201 original size:25 final size:26
Alignment explanation
Indices: 113904104--113904225 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
113904094 GAGGAAGTGC
*
113904104 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
113904130 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
113904156 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
113904182 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
113904207 AAAAGGGCTT-TG-CCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
113904226 ATTAAAGAGG
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 7 0.08
25 25 0.27
26 59 0.65
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:113905931 original size:29 final size:29
Alignment explanation
Indices: 113905899--113905972 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
113905889 CCTTCGAGCT
*
113905899 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
113905928 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
113905957 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
113905973 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:113913642 original size:29 final size:29
Alignment explanation
Indices: 113913610--113913683 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
113913600 CCTTCGAGCT
*
113913610 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
113913639 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
113913668 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
113913684 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:113915512 original size:31 final size:31
Alignment explanation
Indices: 113915435--113915513 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
113915425 CATTTACAGT
* *
113915435 AAAGGCTTCGGCCCAATGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
113915466 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
113915497 AAAGTCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
113915514 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:113917776 original size:27 final size:27
Alignment explanation
Indices: 113917757--113917886 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
113917747 ATTACCAAAG
113917757 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
113917784 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
113917811 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
113917838 TACCCTCGATTTCTAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
113917865 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
113917887 TAAAATACCC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:113917790 original size:54 final size:54
Alignment explanation
Indices: 113917732--113917844 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
113917722 TACTGAAATG
*
113917732 CCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
* * * **** *
113917786 CCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
113917840 CCCTC
1 CCCTC
113917845 GATTTCTAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (54 bp):
CCCTCAAATTATAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
Found at i:113917897 original size:54 final size:54
Alignment explanation
Indices: 113917757--113917886 Score: 215
Period size: 54 Copynumber: 2.4 Consensus size: 54
113917747 ATTACCAAAG
113917757 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTT
* * *
113917811 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTCTAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTT
* *
113917865 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
113917887 TAAAATACCC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTT
Found at i:113917923 original size:81 final size:81
Alignment explanation
Indices: 113917744--113917924 Score: 177
Period size: 81 Copynumber: 2.2 Consensus size: 81
113917734 CTCAAATTGT
* * *
113917744 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCGT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGT
** *
113917809 TTTACCCTCGATTTAT
66 AATACCCTCGATTTAC
* **** * * * *
113917825 AGAATTACCGTTTTACCCTCGATTTCTAGAATTATCGTTTTACCCTCGATTTACAAAATTA-C-T
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGT
* *
113917888 AAAATACCCTTGGTTTAC
66 --AATACCCTCGATTTAC
113917906 AAAATTACCAAAATACCCT
1 AAAATTACCAAAATACCCT
113917925 GGTTGTAAAA
Statistics
Matches: 77, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 75 0.97
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGT
AATACCCTCGATTTAC
Found at i:113918029 original size:27 final size:27
Alignment explanation
Indices: 113917879--113918219 Score: 302
Period size: 27 Copynumber: 12.7 Consensus size: 27
113917869 CTCGATTTAC
* * * **
113917879 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
*
113917906 AAAATTACCAAAATA-CCCT-GGTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
113917931 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
113917958 -AAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
113917984 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
113918011 AAAATTACCAAAATACCCCT-GATTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * * *
113918038 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* * * **
113918065 AGAATTATCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTAGT-TTGT
* * *
113918092 AAAATTACCGAAATA-CGCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
*
113918119 AAAATTAACAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
113918146 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * * *
113918173 GAAATTATCGAAATA-CCCTCAATTTAT
1 AAAATTACCAAAATACCCCT-AGTTTGT
113918200 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
113918220 GATTTACAAA
Statistics
Matches: 259, Mismatches: 43, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
25 17 0.07
26 41 0.16
27 190 0.73
28 11 0.04
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:113918364 original size:27 final size:27
Alignment explanation
Indices: 113918341--113918420 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
113918331 TTAGGTATAA
113918341 AGACCGTAAAGCCCCTGTAGGGTAAAG
1 AGACCGTAAAGCCCCTGTAGGGTAAAG
113918368 AGACCGTAAAGCCCCTGTAGGGTAAAG
1 AGACCGTAAAGCCCCTGTAGGGTAAAG
* *
113918395 TGACCGTAATA-CCCCTGTATGGTAAA
1 AGACCGTAA-AGCCCCTGTAGGGTAAA
113918421 ATGATGAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.19
Consensus pattern (27 bp):
AGACCGTAAAGCCCCTGTAGGGTAAAG
Found at i:113919292 original size:25 final size:26
Alignment explanation
Indices: 113919195--113919330 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
113919185 GAGGAAGTGC
*
113919195 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
113919221 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
113919247 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
113919273 AAAAGGGATT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
113919298 AAAAGGGCTT-TACCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
113919321 AAAAGAGGCT
1 AAAAG-GGCT
113919331 AGGCTTCCAG
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 29 0.29
26 58 0.59
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:113919522 original size:42 final size:42
Alignment explanation
Indices: 113919463--113919550 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
113919453 TAGTCTCCCC
* ** *
113919463 AAATGGGCTTCAATACATTCATTGGTATTTCATGTGATATTA
1 AAATGGGCTTCAATACATCCATTGACATTACATGTGATATTA
*
113919505 AAATGGGCTTGC-ATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTT-CAATACATCCATTGACATTACATGTGATATTA
113919547 AAAT
1 AAAT
113919551 AGGCCTAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTCAATACATCCATTGACATTACATGTGATATTA
Found at i:113919655 original size:31 final size:31
Alignment explanation
Indices: 113919578--113919656 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
113919568 CGTTTACAGT
*
113919578 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
113919609 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
113919640 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
113919657 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:113932479 original size:50 final size:50
Alignment explanation
Indices: 113932414--113932543 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
113932404 ATATGTGTCG
*
113932414 GTGTAAAACCATGTCTGGGACATGGCATCGG-CAC-AAAAAGAGGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAAAA-A-GAGAGCCA
* * * * * *
113932464 GTGTAAGACCATGTCTGGGAAATGTCATCGGCCTCGATATAAGAGAGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAAAAAGAGAGCCA
* *
113932514 GTGTAAGACCATGTCTAGGACATGGTATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
113932544 ACTTGATAAG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
50 61 0.91
51 3 0.04
52 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAAAAAGAGAGCCA
Found at i:113932652 original size:43 final size:43
Alignment explanation
Indices: 113932559--113932658 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
113932549 ATAAGTGATT
* * * *
113932559 ACATGTAAGACCATGTCTGGGACAGTGGCATTGTATTGTGATT
1 ACATGTAAGACCATGTCAGGGACAGTGGCATCGTATTGTCATA
* * * *
113932602 TCGTGTAAGACCCTGTGAGGGACAGTGGCATCG-ATATGTCATA
1 ACATGTAAGACCATGTCAGGGACAGTGGCATCGTAT-TGTCATA
113932645 ACATGTAAGACCAT
1 ACATGTAAGACCAT
113932659 ATCTAGGATA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 2 0.04
43 43 0.96
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
ACATGTAAGACCATGTCAGGGACAGTGGCATCGTATTGTCATA
Found at i:113937334 original size:17 final size:17
Alignment explanation
Indices: 113937297--113937329 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
113937287 GAAAACATCT
113937297 CAAAAGCATAAAGAAAA
1 CAAAAGCATAAAGAAAA
113937314 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
113937329 C
1 C
113937330 CCAAACTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.70, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:113948813 original size:40 final size:39
Alignment explanation
Indices: 113948736--113948821 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
113948726 TAACGACTTA
**
113948736 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* *
113948775 TCGGCTAAAAGTGGCACTTGGTGTGCAATT-TAAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAA-ATAGCT
113948815 TCGGCTA
1 TCGGCTA
113948822 TATATATGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
39 12 0.29
40 29 0.71
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:113956627 original size:25 final size:26
Alignment explanation
Indices: 113956562--113956635 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 26
113956552 GGAGGAAGTG
*
113956562 CAAAAAGGGCTTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTTGCCCCAGTTTAC
* *
113956588 CGAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTTGCCCCAGTTTAC
*
113956614 CAAAAAGGAC-TTTGCCCCAGTT
1 CAAAAAGGGCTTTTGCCCCAGTT
113956636 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 12 0.28
26 31 0.72
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
CAAAAAGGGCTTTTGCCCCAGTTTAC
Found at i:113958737 original size:40 final size:40
Alignment explanation
Indices: 113958671--113958837 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
113958661 AAATTGAATG
* * *
113958671 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
113958710 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
113958750 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
113958790 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
113958830 ATATCCGG
1 ATATCCGG
113958838 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:113967346 original size:40 final size:40
Alignment explanation
Indices: 113967209--113967390 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 40
113967199 CCGCACCAAG
* * * * * * * *
113967209 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
113967249 GCCTTCGGGTCTTAGCCCGGAT-TAAC-AATTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
113967287 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * * * *
113967327 GCCTTCGGGTCTTAACCCGGTTATAATTTCCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
113967367 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
113967391 CATTCAATTT
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 30 0.25
39 10 0.08
40 79 0.66
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:113975267 original size:40 final size:40
Alignment explanation
Indices: 113975222--113975351 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
113975212 CGGAATACAA
113975222 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
113975262 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
113975302 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
113975342 CCGGATATAA
1 CCGGATATAA
113975352 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:113978135 original size:24 final size:24
Alignment explanation
Indices: 113978103--113978165 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
113978093 AATCTCAAAT
113978103 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
113978127 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
113978151 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
113978166 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:113983587 original size:30 final size:28
Alignment explanation
Indices: 113983551--113983616 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 28
113983541 TATTAAAATA
*
113983551 AAGGGCTT-TTTTGAGTAAAAACTATAAGTT
1 AAGGGCTTATTTT-ACTAAAAA--ATAAGTT
*
113983581 AAGGGCTTATTTTACTAAAAAATAGGTT
1 AAGGGCTTATTTTACTAAAAAATAAGTT
113983609 AAGGGCTT
1 AAGGGCTT
113983617 GTTTAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 14 0.42
30 15 0.45
31 4 0.12
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (28 bp):
AAGGGCTTATTTTACTAAAAAATAAGTT
Found at i:113990062 original size:22 final size:23
Alignment explanation
Indices: 113990015--113990064 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 23
113990005 TGGTTCAATC
113990015 AAATAAATTAATAAAAGTTTATAA
1 AAATAAA-TAATAAAAGTTTATAA
113990039 AAATAAA-AATAAATA-TTT-TAA
1 AAATAAATAATAAA-AGTTTATAA
113990060 AAATA
1 AAATA
113990065 GAAAAAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.32
22 9 0.36
23 1 0.04
24 7 0.28
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAATAAATAATAAAAGTTTATAA
Found at i:113997392 original size:42 final size:43
Alignment explanation
Indices: 113997333--113997447 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
113997323 TAGAGTTATT
113997333 TGAGATTAT-GTGTAAGACCATATCTAGGATATGA-CATTGATA
1 TGAGATT-TCGTGTAAGACCATATCTAGGATATGAGCATTGATA
* * * *
113997375 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTAGCATTGATA
1 TGAGATTTCGTGTAAGACCATATCTAGGATATGAGCATTGATA
** *
113997418 TGAGATCCCATGTAAGACCATATCTAGGAT
1 TGAGATTTCGTGTAAGACCATATCTAGGAT
113997448 GACCATAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 28 0.46
43 32 0.52
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCATATCTAGGATATGAGCATTGATA
Found at i:113997458 original size:58 final size:58
Alignment explanation
Indices: 113997390--113997505 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
113997380 TTTCGTGTAA
113997390 GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
1 GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
* *
113997448 GACCATAGCTGGGCTATTGGCATTGATATGAGATCCCATGTAAGACCATATCTGGGAT
1 GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
113997506 ATGGCATTGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (58 bp):
GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
Found at i:114001245 original size:40 final size:40
Alignment explanation
Indices: 114001200--114001329 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
114001190 CGGAATACAA
114001200 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
114001240 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
114001280 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
114001320 CCGGATATAA
1 CCGGATATAA
114001330 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:114001344 original size:40 final size:40
Alignment explanation
Indices: 114001200--114001363 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
114001190 CGGAATACAA
* **
114001200 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
114001240 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
114001280 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
114001320 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
114001360 CCGG
1 CCGG
114001364 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:114009295 original size:40 final size:40
Alignment explanation
Indices: 114009250--114009379 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
114009240 CGGAATACAA
114009250 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
114009290 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
114009330 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
114009370 CCGGATATAA
1 CCGGATATAA
114009380 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:114009394 original size:40 final size:40
Alignment explanation
Indices: 114009250--114009412 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
114009240 CGGAATACAA
* **
114009250 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
114009290 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
114009330 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
114009370 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
114009409 CCGG
1 CCGG
114009413 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:114011253 original size:46 final size:45
Alignment explanation
Indices: 114011200--114011373 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
114011190 TATTTGGGCA
114011200 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
114011246 TCCGAACTCGTTGAGTTGAGT-CGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
114011292 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
114011337 CCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
114011374 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 38 0.36
46 52 0.49
47 8 0.07
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:114016862 original size:92 final size:91
Alignment explanation
Indices: 114016699--114016867 Score: 250
Period size: 92 Copynumber: 1.8 Consensus size: 91
114016689 AGGATATTTG
* * *
114016699 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
114016764 TCAGTCCGAGTTCGAGAGATGTAACTA
66 TCAGTCC-AGTTCGAGAGATGTAACTA
* * *
114016791 GGCATCCGAGCTCGTTGAGTTGAATCTGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
114016855 TTGAGTCCAGTTC
66 -TCAGTCCAGTTC
114016868 ACTTATGGGG
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
91 32 0.46
92 37 0.54
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TCAGTCCAGTTCGAGAGATGTAACTA
Found at i:114025315 original size:85 final size:85
Alignment explanation
Indices: 114025178--114025336 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
114025168 ATCTAAGACA
* * ** * * *
114025178 TCGTGTAAGACCGTGTCTGGGACGCAGGCCTCGATTGATATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCCTGTCCGGGACAAAGGCATCGATTGATATTTACATATAAGACCATGTCTGGGA
114025243 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
*
114025263 TCGTGTAAGACCCTGTCCGGGACAAAGGCATCGATATTGA-A-TTACATGTAAGACCATGTCTGG
1 TCGTGTAAGACCCTGTCCGGGACAAAGGCATCG--ATTGATATTTACATATAAGACCATGTCTGG
*
114025326 GACGTCGGCAT
64 GACATCGGCAT
114025337 TGTACTTGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 57 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCCGGGACAAAGGCATCGATTGATATTTACATATAAGACCATGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:114025336 original size:43 final size:42
Alignment explanation
Indices: 114025179--114025336 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
114025169 TCTAAGACAT
* * *
114025179 CGTGTAAGACCGTGTCTGGGAC-GCAGGCCTCG-ATTGATATTTA
1 CGTGTAAGACCATGTCTGGGACATC-GGCATCGTATTGA-A-TTA
* * *
114025222 CGTATAAGACCATGTTTGGGACATCGGCATCGTATCTG-ATTT
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGTAT-TGAATTA
* * **
114025264 CGTGTAAGACCCTGTCCGGGACAAAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTGAATTA
* *
114025307 CATGTAAGACCATGTCTGGGACGTCGGCAT
1 CGTGTAAGACCATGTCTGGGACATCGGCAT
114025337 TGTACTTGTT
Statistics
Matches: 91, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 30 0.33
43 56 0.62
44 3 0.03
45 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATCGTATTGAATTA
Found at i:114029398 original size:42 final size:42
Alignment explanation
Indices: 114029339--114029425 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
114029329 GGGGCAAAAG
*
114029339 TGTAATTTTTCCATAGTATGATTATTGGAGTGAGTTGAATAA
1 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
114029381 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
1 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
114029423 TGT
1 TGT
114029426 GAATAATAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.44
Consensus pattern (42 bp):
TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
Found at i:114037580 original size:39 final size:39
Alignment explanation
Indices: 114037499--114037661 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
114037489 TATGGTAACC
* *
114037499 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
114037539 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
114037578 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
114037617 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
114037656 CGCACA
1 CGCACA
114037662 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:114047714 original size:537 final size:542
Alignment explanation
Indices: 114044940--114048370 Score: 6421
Period size: 536 Copynumber: 6.4 Consensus size: 542
114044930 NNNNNNNNNN
114044940 AAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGG
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
114045004 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
114045069 TTACAAA-CTAGGGG-AAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
* *
114045132 TAGTATGATGAAATGTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
196 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
114045197 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
261 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
114045262 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
326 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
114045327 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
391 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
114045392 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
456 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
114045457 AGTGATTTTCAATGAAAATGCT
521 AGTGATTTTCAATGAAAATGCT
114045479 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
114045544 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
* *
114045609 TTACAAGCCTA-GGG-AAAAGTGTAAATATGATAAAATTTA-GGGCAAAAAT-TAATTTTT-CCA
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
*
114045669 TAGTATGATAAAA-TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTGGTCATC
196 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
114045733 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
261 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
114045798 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
326 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
114045863 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
391 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
114045928 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
456 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
114045993 AGTGATTTTCAATGAAAATGCT
521 AGTGATTTTCAATGAAAATGCT
114046015 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
114046080 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
114046145 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
** *
114046210 TAGTATGATGTAATGTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
196 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
114046275 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
261 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
114046340 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
326 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
114046405 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
391 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
114046470 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTT-TGGTTGGAGAAACAACTTTTGCTA
456 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
114046534 AGTGATTTTCAATGAAAATGCT
521 AGTGATTTTCAATGAAAATGCT
114046556 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
114046621 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
114046686 TTACAAACCTAGGGG-AAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
114046750 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAA-AAAATAAAAGCCAAATTTT-GTCATC
196 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
114046813 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
261 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
114046878 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA-ATG
326 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
114046942 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
391 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
114047007 -TT-TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
456 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
114047070 AGTGATTTTCAATGAAAATGCT
521 AGTGATTTTCAATGAAAATGCT
114047092 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
114047157 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
114047222 TTACAAACCTAGGGGCAAAAGTGTAAATATGAT-AAATTTAGGGG-AAAAATGTAATTTTTGCCA
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
114047285 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAA-AAAATAAAAGCCAAATTTTGGTCATC
196 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
114047349 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
261 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
114047414 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA-ATG
326 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
114047478 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
391 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
114047543 TTT-TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
456 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
*
114047607 AGTAATTTTCAATGAAAATGCT
521 AGTGATTTTCAATGAAAATGCT
* *
114047629 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTTAGTAGAAATTGTGG
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
* *
114047694 GTTTTTATAGTTGTGAAAGTGGTTCGGCTGGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
* * *
114047759 TTACAAGCCTAGGGGCAAAAGTGTAAATATGATAAAATTTAGGGGAAAAAATGTAATTTTT-CCA
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
*
114047823 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAAT-AAAGCCAAATTTTTGTCATC
196 TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
114047887 TTCAACCCCTTGGCCGAAATTTTGAAGACCA-CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
261 TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
* *
114047951 CCATAGTAAGTCCGTTCTTACCCCGTTTTTAATGATTTTCACATTTTTGAAATCCTTGTAACATG
326 CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
*
114048016 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATAAA
391 ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
*
114048081 TTTTTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
456 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
114048146 AGTGATTTTTCAATGAAAATGCT
521 AGTGA-TTTTCAATGAAAATGCT
* *
114048169 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGATTT-GTGGAAATTGTGT
1 AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
114048233 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
66 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
* * *
114048298 TTACAAGCCTAGGGGCAAAAGTGTAAATATGAT-AAAGTTTAGGGGCAAAAATATAA-TTTTACC
131 TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAA-TTTAGGGGCAAAAATGTAATTTTTGCC
114048361 ATAGTATGAT
195 ATAGTATGAT
114048371 TTTTGGGTTA
Statistics
Matches: 2841, Mismatches: 31, Indels: 40
0.98 0.01 0.01
Matches are distributed among these distances:
535 112 0.04
536 875 0.31
537 437 0.15
538 343 0.12
539 293 0.10
540 289 0.10
541 208 0.07
542 284 0.10
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (542 bp):
AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGG
GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
TTACAAACCTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCA
TAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
TTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT
CCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATG
ATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAA
TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
AGTGATTTTCAATGAAAATGCT
Found at i:114051431 original size:25 final size:25
Alignment explanation
Indices: 114051403--114051450 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114051393 TTATACCATG
* * *
114051403 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
114051428 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
114051451 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:114051553 original size:20 final size:20
Alignment explanation
Indices: 114051493--114051553 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
114051483 ATAAATATGG
*
114051493 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
114051513 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
114051533 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
114051553 T
1 T
114051554 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:114051647 original size:23 final size:24
Alignment explanation
Indices: 114051603--114051743 Score: 198
Period size: 24 Copynumber: 5.9 Consensus size: 24
114051593 GAGGAAGTGA
114051603 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
114051627 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
114051650 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
114051673 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
114051697 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
114051721 AAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAG-GGCTTATGCC-CCAGTTA
114051744 CATGATAAAA
Statistics
Matches: 108, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.43
24 52 0.48
25 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:114051672 original size:47 final size:47
Alignment explanation
Indices: 114051603--114051743 Score: 196
Period size: 47 Copynumber: 3.0 Consensus size: 47
114051593 GAGGAAGTGA
114051603 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
114051650 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
114051697 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTA
114051744 CATGATAAAA
Statistics
Matches: 86, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 13 0.15
47 52 0.60
48 11 0.13
49 10 0.12
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:114051982 original size:30 final size:31
Alignment explanation
Indices: 114051936--114051998 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
114051926 CGTTTACAGT
114051936 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
114051967 AAAGGCTTC-GCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
114051997 AA
1 AA
114051999 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:114055054 original size:540 final size:542
Alignment explanation
Indices: 114052711--114056217 Score: 6265
Period size: 542 Copynumber: 6.5 Consensus size: 542
114052701 GTGTTGCATA
*
114052711 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
*
114052776 CTAATTTGTAAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
114052841 AGTTATGAAAGTGGTTCGACTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
131 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
114052906 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
196 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
* * *
114052971 TGAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTTATCTTCAACCC
261 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
*
114053036 CTTGGCCGAAATTTCGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
326 CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
114053101 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
391 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
*
114053166 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA
456 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
114053231 TTTTGATGTTTAATGGTAGATT
521 TTTTGATGTTTAATGGTAGATT
*
114053253 ATGCATGTTTTTGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
114053318 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
* *
114053383 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATAATTTTACAAGC
131 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
* * * * *
114053448 CTAGGGGAAAAAGTGTAAATATGATAAAATTTAGTGGCAAAAATTTAATTTTTTCCATAGTATGA
196 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
* * **
114053513 TAAAATGTAGTAATTAAATATTTAAATAAACAAAATAAAAGAGAAATTTTTGTCATCTTCAACCC
261 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
* * * * *
114053578 CTTGGCCAAAATTTTGAAGACCACTATGGGTAGGGTTTTGTTTAAGGTTTCCAAGCTCCATAATA
326 CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
* * *
114053643 AGTCCGTTCTTGCCCCATTTTTAATGAGTTTCATGTTTTTGAAATCCTTGTAACATGATCTACCT
391 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
*
114053708 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA
456 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
114053773 TTTTGATGTTTAATGGTAGATT
521 TTTTGATGTTTAATGGTAGATT
*
114053795 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
114053860 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
114053925 AGTTATGAAAGTGGTTCGACTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
131 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
114053990 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
196 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
* *
114054055 T-AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTTATCTTCAACCC
261 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
*
114054119 CTTGGCTGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
326 CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
114054184 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
391 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
*
114054249 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA
456 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
**
114054314 AATTGATGTTTAATGGTAGATT
521 TTTTGATGTTTAATGGTAGATT
* *
114054336 ATGCATGTTTTTGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
*
114054401 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTAGAAATTGTGGGTTTTTAT
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
114054466 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATGTTACAAAC
131 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
* *
114054531 CTAGGGGAAAAAGTGTAAATATGATGAAATTTAGGGGAAAAAATGTAATTTTTGCCATAGTATGA
196 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
*
114054596 TAAAATTTAGTAATTAAATGTTTAAATAAAGAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
261 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
* *
114054661 CTTGGCCGAAATTTTGAAGACCGCCATGGCTAGGGTTTTGTTTAAGCTTTGCAAGCTCCATAGTA
326 CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
* * *
114054726 AGTCCGTTCTTGCCCCGTTTTTAATTATTTTCACGTTTTTGAAATCCTTGTAAAATGTTCTACCT
391 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
114054791 ATTTCTACCATTTATTT-AGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTT-TGTA
456 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
114054854 TTTTGATGTTTAATGGTAGATT
521 TTTTGATGTTTAATGGTAGATT
114054876 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
114054941 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
114055006 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
131 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
*
114055071 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGAAAAAATGTAATTTTTGCCATAGTATGA
196 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
*
114055136 TAAAATTTAGTAATTAAATGTTTAAATAAAGAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
261 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
* *
114055201 CTTGGCCGAAATTTTGAAGACCGCCATGGCTAGGGTTTTGTTTAAGCTTTGCAAGCTCCATAGTA
326 CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
* * *
114055266 AGTCCGTTCTTGCCCCGTTTTTAATTATTTTCACGTTTTTGAAATCCTTGTAAAATGTTCTACCT
391 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
114055331 ATTTCTACCATTTATTT-AGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTT-TGTA
456 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
114055394 TTTTGATGTTTAATGGTAGATT
521 TTTTGATGTTTAATGGTAGATT
114055416 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
114055481 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
114055546 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
131 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
* * *
114055611 CTAGGGGCAAAAGTGTAAATATGATGAAATTGAGGGGAAAAAATGTAATTTTTTCCATAGTATGA
196 CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
* *
114055676 TAAACTTTAGTAATTAAATGTTTAAATAAACAAAATAATAGCCAAATTTTTGTCATCTTCAACCC
261 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
*
114055741 CTTGGCCGAAATTTTGAAGACCATCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
326 CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
* * *
114055806 AGTCCGTTCTTACCCCGTTTTTAATTATTTTCACATTTTTGAAATCCTTGTAACATGATCTACCT
391 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
* * *
114055871 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACTATGTGATAAATTTTTGTA
456 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
114055936 TTTTGATGTTTAATGGTAGATT
521 TTTTGATGTTTAATGGTAGATT
*
114055958 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGTTTTTCAATGAAAATGCTAAAAAGGA
1 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
* * *
114056023 ATAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTATGAGTTT-GTGGAAATTGTGTGTTTTTA
66 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGA-TTTAGTGGAAATTGTGGGTTTTTA
*
114056087 TAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAG
130 TAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAA
* *
114056152 CCTAGGGGCAAAAGTGTAAATATGAT-AAAGTTTAGGGGCAAAAATATAA-TTTTACCATAGTAT
195 CCTAGGGGCAAAAGTGTAAATATGATGAAA-TTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT
114056215 GAT
259 GAT
114056218 TTTTGGGTTA
Statistics
Matches: 2860, Mismatches: 100, Indels: 11
0.96 0.03 0.00
Matches are distributed among these distances:
540 1019 0.36
541 618 0.22
542 1220 0.43
543 3 0.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (542 bp):
ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAAC
CTAGGGGCAAAAGTGTAAATATGATGAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGTCATCTTCAACCC
CTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTA
TTTTGATGTTTAATGGTAGATT
Found at i:114060527 original size:40 final size:40
Alignment explanation
Indices: 114060426--114060644 Score: 231
Period size: 40 Copynumber: 5.5 Consensus size: 40
114060416 CGAATGGTAT
* * * * * *
114060426 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
114060467 CCAGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
114060507 CCGGGTTGAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
** *
114060547 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * **
114060587 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
114060627 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
114060645 ACAATCGAGC
Statistics
Matches: 151, Mismatches: 27, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 128 0.85
41 23 0.15
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:114060640 original size:120 final size:121
Alignment explanation
Indices: 114060426--114060644 Score: 291
Period size: 120 Copynumber: 1.8 Consensus size: 121
114060416 CGAATGGTAT
* *
114060426 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCAATT
* *
114060491 GTGCGAGTTACCAAAACCGGGTTGAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAACCGGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
114060547 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAATCC-GGGCTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGGTC-AATTCCCGAAGGCAAT
* **
114060610 TGTGCGAATTACTATGACCGGGCT-ATGTCCCGAAG
65 TGTGCGAATTACCAAAACCGGGCTGA-GTCCCGAAG
114060645 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 4 0.05
120 54 0.64
121 26 0.31
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCAGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAACCGGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:114060669 original size:80 final size:80
Alignment explanation
Indices: 114060517--114060670 Score: 173
Period size: 80 Copynumber: 1.9 Consensus size: 80
114060507 CCGGGTTGAG
* * * * * * * * *
114060517 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAT
1 TCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
114060582 TAAATCCGGGCTAAT
66 TAAATCCGGGCTAAT
* ** * *
114060597 TCCCGAAGGCAATTGTGCGAATTACTATGACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGC
1 TCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
*
114060662 TATATCCGG
66 TAAATCCGG
114060671 TTAAATTCCG
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
80 59 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
TAAATCCGGGCTAAT
Found at i:114067130 original size:12 final size:12
Alignment explanation
Indices: 114067113--114067177 Score: 62
Period size: 12 Copynumber: 5.4 Consensus size: 12
114067103 AATTGGTCAT
114067113 GGAGGGATTGTA
1 GGAGGGATTGTA
114067125 GGAGGGATTGTA
1 GGAGGGATTGTA
*
114067137 GGAGGGTGTTG-A
1 GGAGGG-ATTGTA
*
114067149 GGAGAGATATG-A
1 GGAGGGAT-TGTA
* *
114067161 GGAGAGATTTTA
1 GGAGGGATTGTA
114067173 GGAGG
1 GGAGG
114067178 AAATTGTGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
11 2 0.04
12 40 0.89
13 3 0.07
ACGTcount: A:0.28, C:0.00, G:0.49, T:0.23
Consensus pattern (12 bp):
GGAGGGATTGTA
Found at i:114068831 original size:27 final size:27
Alignment explanation
Indices: 114068778--114068831 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
114068768 ATGACCAAAA
* **
114068778 TACCCCTATAGGGTAAAATGATTATTT
1 TACCCCTAGAGGGTAAAATGAAGATTT
114068805 TACCCCTAGAGGGT-AAATGACAGATTT
1 TACCCCTAGAGGGTAAAATGA-AGATTT
114068832 GTGTTGCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAATGAAGATTT
Found at i:114075023 original size:68 final size:68
Alignment explanation
Indices: 114074904--114075301 Score: 469
Period size: 68 Copynumber: 5.9 Consensus size: 68
114074894 GGTTTAATGA
* ** * *** ** *
114074904 GTAAGACCATAGCTTGATTATGGCAACCAATAGAGTCCAATAGGACATTAAACATGTGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
*
114074969 AGT
66 GGT
* *
114074972 GTAAGACCATAGCTCGGCTATGACAACAAATAAAGTCCTCCAGGATGTTAAACATGGGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
114075037 GGT
66 GGT
* *
114075040 GTAAGACCATAGCTCGGCTATGGCAACCAATAGAGTCCGT-CAAGATGTTAAACATGGGGTTACA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCC-TCCAGGATGTTAAACATGGGGTTACA
114075104 AGGT
65 AGGT
* * * * *
114075108 GTAAGTCCACAGCTCGG-TGAT-AGCAACCAATAGAGTCTTCCAGGAAGTTAAACATGAGGTTAC
1 GTAAGACCATAGCTCGGCT-ATGA-CAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTAC
114075171 AAGGT
64 AAGGT
* * ** * *
114075176 GTAAGACCACAACTCGATTATGACAACCAATAAAGTCCTTCAGGATGTTAAACATGGGGTTACAA
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
114075241 GGT
66 GGT
* * * * *
114075244 GTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGAACGTTAATCATGGG
1 GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGG
114075302 TTCAAACTAT
Statistics
Matches: 283, Mismatches: 41, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
67 2 0.01
68 278 0.98
69 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (68 bp):
GTAAGACCATAGCTCGGCTATGACAACCAATAGAGTCCTCCAGGATGTTAAACATGGGGTTACAA
GGT
Found at i:114077838 original size:48 final size:48
Alignment explanation
Indices: 114077786--114077991 Score: 190
Period size: 48 Copynumber: 4.4 Consensus size: 48
114077776 TATCCCAGAT
114077786 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
* ** * **
114077834 ATGGTCTTACATGGGATCATAGGTTGATGCCAATGCCATGTCCCCGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
* * * * *
114077882 ACGGTCTTAGATGGGATCACATATCGATGCCGAT--C--G--CCTAGC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
* ** ** * * *
114077924 TATGGTCTTACACGAAATTGCATATCAATGCCAAAGCCATGTCCCAGAC
1 -ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
114077973 ATGGTCTTACATGGGATCA
1 ATGGTCTTACATGGGATCA
114077992 TACATAACCC
Statistics
Matches: 117, Mismatches: 34, Indels: 14
0.71 0.21 0.08
Matches are distributed among these distances:
42 3 0.03
43 24 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 83 0.71
49 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAAAC
Found at i:114079826 original size:29 final size:29
Alignment explanation
Indices: 114079793--114079849 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
114079783 AAAAAAGGCC
* *
114079793 CATTTACAACATTATTTACGGAAATGGGT
1 CATTTAAAACATTATTTACAGAAATGGGT
*
114079822 CATTTAAAACATTATTTATAGAAATGGG
1 CATTTAAAACATTATTTACAGAAATGGG
114079850 CCAAAAGCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (29 bp):
CATTTAAAACATTATTTACAGAAATGGGT
Found at i:114080963 original size:20 final size:20
Alignment explanation
Indices: 114080938--114080977 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
114080928 CGCTACCTTA
114080938 GGACCGTTATAGTTATGGTC
1 GGACCGTTATAGTTATGGTC
114080958 GGACCGTTATAGTTATGGTC
1 GGACCGTTATAGTTATGGTC
114080978 ATCATTCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.30, T:0.35
Consensus pattern (20 bp):
GGACCGTTATAGTTATGGTC
Found at i:114085510 original size:313 final size:313
Alignment explanation
Indices: 114084942--114085568 Score: 927
Period size: 313 Copynumber: 2.0 Consensus size: 313
114084932 ATCCAGAAAT
** * *
114084942 TGAAAGGACTTTTTGGAATAGACTTCAAGAACAAAGAAATACGACTTTACTAGGGAACAATGCAG
1 TGAAAGGACTTTTCAGAATAGACTTCAAGAACAAAAAAATACGACTTTACTAGGGAACAATACAG
* *
114085007 CCATACCCTCAATGCAACAACAAAATGTTAATAACCCATTGTTCCCGCAAGATGTCTGCATACAA
66 CCATACCCCCAATGCAACAACAAAATGTTAATAACCCATTGTTACCGCAAGATGTCTGCATACAA
* *
114085072 AATAGGACTATACGAGATTTTGTAGTACATGTCTTGGATGATTTGCAATCAGGAGTCGTTAGGCT
131 AATAGGACTATAAGAGATTTTGTAGTACATGTCTTGGATGATTTGCAACCAGGAGTCGTTAGGCT
* ** * *
114085137 AGCAATCCAAGCTAGGAATTTTGAACTCAAGCCAGTAATGTTTCAAATGCTAAATTCTAATGGAC
196 AGCAACCCAAGCTAGGAATTTCAAACTCAAGACAGCAATGTTTCAAATGCTAAATTCTAATGGAC
*
114085202 AATATGCTGGACTGCCACTTGAAGATACGAGAGAACATCTTAAATCCTTTTTA
261 AATATGCTGGACTGCCACATGAAGATACGAGAGAACATCTTAAATCCTTTTTA
* ** *
114085255 TGAAAGGACTTTTCAGAGTAGACTTTGAGAACAAAAAAATAC-AGCTTTACTATGGG-ACAATAT
1 TGAAAGGACTTTTCAGAATAGACTTCAAGAACAAAAAAATACGA-CTTTACTA-GGGAACAATAC
* * *
114085318 AGTCATACCCCCGATGCAATAACAAAATGTTAATAACCCATTGTTACCGCAAGATG-CTCGCATA
64 AGCCATACCCCCAATGCAACAACAAAATGTTAATAACCCATTGTTACCGCAAGATGTCT-GCATA
* * * *
114085382 CAAGATAGGACTATAAGATATTTTGTAGTACTTGTCTTGGATGATTTGCAACCAGGAGTTGTTAG
128 CAAAATAGGACTATAAGAGATTTTGTAGTACATGTCTTGGATGATTTGCAACCAGGAGTCGTTAG
* * *
114085447 GCTAGCAACCCAAGCTGGGAATTTCAAACTCAAGATAGCAATGTTTCAAATGCTGAATTCTAATG
193 GCTAGCAACCCAAGCTAGGAATTTCAAACTCAAGACAGCAATGTTTCAAATGCTAAATTCTAATG
* * *
114085512 GACAATATGTTGGACTGCCACATGAAGATGCGAGAGAACATCTTAAATCTTTTTTA
258 GACAATATGCTGGACTGCCACATGAAGATACGAGAGAACATCTTAAATCCTTTTTA
114085568 T
1 T
114085569 TGATCTGTGT
Statistics
Matches: 280, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
312 3 0.01
313 274 0.98
314 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (313 bp):
TGAAAGGACTTTTCAGAATAGACTTCAAGAACAAAAAAATACGACTTTACTAGGGAACAATACAG
CCATACCCCCAATGCAACAACAAAATGTTAATAACCCATTGTTACCGCAAGATGTCTGCATACAA
AATAGGACTATAAGAGATTTTGTAGTACATGTCTTGGATGATTTGCAACCAGGAGTCGTTAGGCT
AGCAACCCAAGCTAGGAATTTCAAACTCAAGACAGCAATGTTTCAAATGCTAAATTCTAATGGAC
AATATGCTGGACTGCCACATGAAGATACGAGAGAACATCTTAAATCCTTTTTA
Found at i:114092850 original size:11 final size:11
Alignment explanation
Indices: 114092834--114092863 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
114092824 ACCTCCATGA
114092834 TTAACCCCTAG
1 TTAACCCCTAG
114092845 TTAACCCCTAG
1 TTAACCCCTAG
*
114092856 TAAACCCC
1 TTAACCCC
114092864 CTTGAGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.40, G:0.07, T:0.23
Consensus pattern (11 bp):
TTAACCCCTAG
Found at i:114094331 original size:27 final size:27
Alignment explanation
Indices: 114094254--114094333 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
114094244 TCATACGGAA
114094254 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCATTTTAC
* *
114094279 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
* *
114094306 CCTACAGAGGCT-TTACGGTCTTTTTAC
1 CATACAG-GGCTATTACGGTCATTTTAC
114094333 C
1 C
114094334 TATTAGGGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 8 0.18
26 5 0.11
27 29 0.64
28 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCATTTTAC
Found at i:114094417 original size:27 final size:27
Alignment explanation
Indices: 114094391--114094562 Score: 114
Period size: 27 Copynumber: 6.3 Consensus size: 27
114094381 ATCTACAAAC
*
114094391 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
114094418 CAATGGTGTTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
114094447 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** **
114094474 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** *
114094501 TGAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** * *
114094528 CGAGGGTAAAACAATAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
114094555 CAAGGGTA
1 CAAGGGTA
114094563 AAATAGTAAT
Statistics
Matches: 112, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
26 1 0.01
27 87 0.78
28 7 0.06
29 16 0.14
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:114094563 original size:27 final size:27
Alignment explanation
Indices: 114094514--114094696 Score: 217
Period size: 27 Copynumber: 6.8 Consensus size: 27
114094504 GGGTATTTCG
*
114094514 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
114094541 ATAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* **
114094568 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
114094595 GTAATTCTCTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
114094622 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
114094649 GTAATTATGTAAATCG-GGGTTAAAACG
1 GTAATTCTGTAAATCGAGGG-TAAAACA
*
114094676 GTAATTATGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
114094697 CTTTGGTAAT
Statistics
Matches: 140, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 5 0.04
27 135 0.96
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:114094572 original size:81 final size:81
Alignment explanation
Indices: 114094487--114094696 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 81
114094477 GGGTATTTTG
* * ** * *
114094487 GTAATTTTACAAATTGAGGGT-ATTTCGGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGT
1 GTAATTCTACAAATCGAGGGTAAAAT-GGTAATTCTCTAAATCGAGGGTAAAACAATAATTCTGT
114094551 AAATCAAGGGTAAAATA
65 AAATCAAGGGTAAAATA
* * * *
114094568 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTCTAAATCGAGGGTAAAATAGTAATTTTGTA
1 GTAATTCTACAAATCGAGGGTAAAATGGTAATTCTCTAAATCGAGGGTAAAACAATAATTCTGTA
* **
114094633 AATCGAGGGTAAAACG
66 AATCAAGGGTAAAATA
* ** * * *
114094649 GTAATTATGTAAATCG-GGGTTAAAACGGTAATTATGTAAATCG-GGGTA
1 GTAATTCTACAAATCGAGGG-TAAAATGGTAATTCTCTAAATCGAGGGTA
114094697 CTTTGGTAAT
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
80 8 0.07
81 99 0.91
82 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (81 bp):
GTAATTCTACAAATCGAGGGTAAAATGGTAATTCTCTAAATCGAGGGTAAAACAATAATTCTGTA
AATCAAGGGTAAAATA
Found at i:114099008 original size:47 final size:47
Alignment explanation
Indices: 114098954--114099608 Score: 979
Period size: 47 Copynumber: 14.0 Consensus size: 47
114098944 TTAGGATTTT
** *
114098954 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099001 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
114099048 ATGTGGTGAATATGAACATGCATTTATGTTATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099095 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099142 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099189 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099236 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
114099283 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099330 ATGTGATGAATGTGAGCATGCATATGTGTGAT-AGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
114099376 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
114099423 ATGTGATGAATGTGAACATCCATATATGTGATGAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099470 ATGTGATGAATGTGAGCATGCATATTTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
114099517 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
114099564 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
114099609 TAGTGTGAAA
Statistics
Matches: 549, Mismatches: 58, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
46 42 0.08
47 507 0.92
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:114099056 original size:25 final size:25
Alignment explanation
Indices: 114098981--114099056 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
114098971 GTGTATATAT
114098981 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
114099006 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
114099028 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
114099053 GTGA
1 GTGA
114099057 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:114099192 original size:22 final size:22
Alignment explanation
Indices: 114099167--114099242 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
114099157 ACATGCATAT
114099167 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
114099189 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
114099211 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
114099236 ATGTGAT
1 ATGTGAT
114099243 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:114099263 original size:23 final size:23
Alignment explanation
Indices: 114099189--114099263 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
114099179 CGAATGGCCA
114099189 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
* * *
114099212 ATGTG-TGATAAG-GCCGAATGGCCA-
1 ATGTGATGA-ATGTG-AGCAT-G-CAT
114099236 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
114099259 ATGTG
1 ATGTG
114099264 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 16 0.41
24 11 0.28
25 6 0.15
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAGCATGCAT
Found at i:114099572 original size:25 final size:25
Alignment explanation
Indices: 114099497--114099572 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
114099487 ATGCATATTT
114099497 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
114099522 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
114099544 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
114099569 GTGA
1 GTGA
114099573 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:114099953 original size:37 final size:37
Alignment explanation
Indices: 114099771--114099959 Score: 297
Period size: 37 Copynumber: 5.1 Consensus size: 37
114099761 GGAAATATAT
* *
114099771 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
114099808 TCCGGGTAAGACCCGATGACTATGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
114099845 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
114099882 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
114099919 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
114099956 TCCG
1 TCCG
114099960 TGCTAAAGGT
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 143 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:114110476 original size:20 final size:21
Alignment explanation
Indices: 114110442--114110481 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
114110432 ATTTGCCATT
*
114110442 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
114110463 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
114110482 TATAAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:114110494 original size:12 final size:11
Alignment explanation
Indices: 114110471--114110500 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
114110461 AATACAATTT
114110471 TATAAAAAATA
1 TATAAAAAATA
114110482 TATAAAGAAATA
1 TATAAA-AAATA
114110494 TATAAAA
1 TATAAAA
114110501 TAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
TATAAAAAATA
Found at i:114110506 original size:14 final size:14
Alignment explanation
Indices: 114110476--114110550 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
114110466 AATTTTATAA
114110476 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
114110488 GAAATATATAAAAT
1 AAAATATATAAAAT
*
114110502 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
114110516 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
114110532 AAAATATATGATAAT
1 AAAATATAT-AAAAT
114110547 AAAA
1 AAAA
114110551 AATAATGGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:114110554 original size:17 final size:17
Alignment explanation
Indices: 114110532--114110565 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
114110522 ATTTATAGAT
114110532 AAAATATAT-GATAATAA
1 AAAATA-ATGGATAATAA
114110549 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
114110566 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATAATGGATAATAA
Found at i:114118395 original size:40 final size:39
Alignment explanation
Indices: 114118284--114118397 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
114118274 TTAATCACGT
* * *
114118284 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
114118324 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
*
114118364 GCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
114118398 TTTCCAGCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.03
40 61 0.97
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:114125720 original size:39 final size:40
Alignment explanation
Indices: 114125597--114125762 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
114125587 AAATTGAATG
* * *
114125597 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
114125636 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
114125676 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
114125715 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
114125755 ATATCCGG
1 ATATCCGG
114125763 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:114125729 original size:79 final size:79
Alignment explanation
Indices: 114125597--114125746 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
114125587 AAATTGAATG
*
114125597 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
114125662 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
114125676 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
114125739 ATTTGTGC
64 AATTGTGC
114125747 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:114133666 original size:40 final size:40
Alignment explanation
Indices: 114133600--114133766 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
114133590 AAATTGAATG
* * *
114133600 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
114133639 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
114133679 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
114133719 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
114133759 ATATCCGG
1 ATATCCGG
114133767 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:114140707 original size:19 final size:20
Alignment explanation
Indices: 114140683--114140722 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
114140673 AATGTAATTT
114140683 ATTAAGA-AGAAAATTTTTA
1 ATTAAGATAGAAAATTTTTA
**
114140702 ATTAAGATTTAAAATTTTTA
1 ATTAAGATAGAAAATTTTTA
114140722 A
1 A
114140723 GTTTCATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (20 bp):
ATTAAGATAGAAAATTTTTA
Found at i:114145902 original size:18 final size:18
Alignment explanation
Indices: 114145879--114145916 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
114145869 TAATAACTAG
114145879 ATACATACAGGATAGACT
1 ATACATACAGGATAGACT
114145897 ATACATACAGGATAGACT
1 ATACATACAGGATAGACT
114145915 AT
1 AT
114145917 CTTGAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (18 bp):
ATACATACAGGATAGACT
Found at i:114147392 original size:41 final size:42
Alignment explanation
Indices: 114147336--114147424 Score: 146
Period size: 41 Copynumber: 2.1 Consensus size: 42
114147326 ATTCTAGGAA
*
114147336 TATTTTATTTTATCTTTTAGTAGTTTATTAGAATAA-GAGAAT
1 TATTTTATCTTATCTTTTAGTAGTTTATTAGAATAAGGA-AAT
114147378 TATTTT-TCTTATCTTTTAGTAGTTTATTAGAATAAGGAAAT
1 TATTTTATCTTATCTTTTAGTAGTTTATTAGAATAAGGAAAT
114147419 TATTTT
1 TATTTT
114147425 CCCAATTAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 37 0.82
42 8 0.18
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.54
Consensus pattern (42 bp):
TATTTTATCTTATCTTTTAGTAGTTTATTAGAATAAGGAAAT
Found at i:114148558 original size:25 final size:24
Alignment explanation
Indices: 114148530--114148594 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
114148520 TGGAAACTAG
*
114148530 TAAGCTCATACGAGGTAAGAA-TCGA
1 TAAGCTCATACGAGCT--GAATTCGA
* * *
114148555 TAAGCTCTTACAAGCTGAATTCGG
1 TAAGCTCATACGAGCTGAATTCGA
114148579 TAAGCTCATACGAGCT
1 TAAGCTCATACGAGCT
114148595 ATGGTGTGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 3 0.09
24 17 0.52
25 13 0.39
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (24 bp):
TAAGCTCATACGAGCTGAATTCGA
Found at i:114156283 original size:24 final size:25
Alignment explanation
Indices: 114156256--114156333 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 25
114156246 ATGCTCATAC
* *
114156256 GAGCT-AGAATCGGTATGCTCTCAT
1 GAGCTAAGAATTGGTAAGCTCTCAT
*
114156280 GAGCTAAAAATTGGTAAG--CTCAT
1 GAGCTAAGAATTGGTAAGCTCTCAT
*
114156303 AGAGCTAAGAATTGGGAAGCTCTCAT
1 -GAGCTAAGAATTGGTAAGCTCTCAT
114156329 GAGCT
1 GAGCT
114156334 GAAGCTGGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
23 5 0.11
24 21 0.47
25 14 0.31
26 5 0.11
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (25 bp):
GAGCTAAGAATTGGTAAGCTCTCAT
Found at i:114156325 original size:49 final size:49
Alignment explanation
Indices: 114156248--114156358 Score: 145
Period size: 49 Copynumber: 2.3 Consensus size: 49
114156238 GTACATGTAT
* * *
114156248 GCTCATACGAGCT-AGAATCGGTATGCTCTCATGAGCTAAAAATTGGTAA
1 GCTCATACGAGCTAAGAATCGGGAAGCTCTCATGAGCT-AAAACTGGTAA
* * *
114156297 GCTCATA-GAGCTAAGAATTGGGAAGCTCTCATGAGCTGAAGCTGGTAA
1 GCTCATACGAGCTAAGAATCGGGAAGCTCTCATGAGCTAAAACTGGTAA
114156345 GCTCATACGAGCTA
1 GCTCATACGAGCTA
114156359 TGGTGTGTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
48 20 0.37
49 34 0.63
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (49 bp):
GCTCATACGAGCTAAGAATCGGGAAGCTCTCATGAGCTAAAACTGGTAA
Done.