Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 372 of 770
Found at i:114466979 original size:27 final size:27
Alignment explanation
Indices: 114466949--114467001 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
114466939 CATACAACCT
* *
114466949 ATGTAATAGTAATTTAACATTCAATTC
1 ATGTAACAATAATTTAACATTCAATTC
**
114466976 ATGTAACAATAATTTGTCATTCAATT
1 ATGTAACAATAATTTAACATTCAATT
114467002 TCACAAGACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (27 bp):
ATGTAACAATAATTTAACATTCAATTC
Found at i:114468226 original size:22 final size:22
Alignment explanation
Indices: 114468198--114468243 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
114468188 AATTAAGGTT
114468198 AGGCCAGATCTGACCTCCAAAG
1 AGGCCAGATCTGACCTCCAAAG
114468220 AGGCCAGATCTGACCTCCAAAG
1 AGGCCAGATCTGACCTCCAAAG
114468242 AG
1 AG
114468244 AAGCCAGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.30, G:0.24, T:0.13
Consensus pattern (22 bp):
AGGCCAGATCTGACCTCCAAAG
Found at i:114478733 original size:10 final size:10
Alignment explanation
Indices: 114478715--114478746 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
114478705 TTCTAACTCA
*
114478715 TTTACTTTAT
1 TTTATTTTAT
114478725 TTTATTTTAT
1 TTTATTTTAT
114478735 TTTATTTTAT
1 TTTATTTTAT
114478745 TT
1 TT
114478747 CTTTCTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTATTTTAT
Found at i:114478738 original size:15 final size:15
Alignment explanation
Indices: 114478715--114478746 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
114478705 TTCTAACTCA
114478715 TTTACTTTATTTTAT
1 TTTACTTTATTTTAT
*
114478730 TTTATTTTATTTTAT
1 TTTACTTTATTTTAT
114478745 TT
1 TT
114478747 CTTTCTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTACTTTATTTTAT
Found at i:114482873 original size:27 final size:28
Alignment explanation
Indices: 114482817--114482886 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
114482807 AAATTTGTAC
114482817 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
114482845 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
114482872 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
114482887 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:114482897 original size:27 final size:27
Alignment explanation
Indices: 114482817--114482898 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
114482807 AAATTTGTAC
* *
114482817 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
114482845 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
114482872 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
114482899 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:114484720 original size:13 final size:13
Alignment explanation
Indices: 114484702--114484727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114484692 ACAAATCATT
114484702 TCTTTAAAACCCA
1 TCTTTAAAACCCA
114484715 TCTTTAAAACCCA
1 TCTTTAAAACCCA
114484728 AATCCATAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (13 bp):
TCTTTAAAACCCA
Found at i:114491268 original size:2 final size:2
Alignment explanation
Indices: 114491263--114491287 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114491253 TATATATATA
114491263 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
114491288 ATTGGGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:114501860 original size:68 final size:69
Alignment explanation
Indices: 114501788--114501985 Score: 283
Period size: 71 Copynumber: 2.8 Consensus size: 69
114501778 ACACCCTGTA
* * * *
114501788 GTAGCTAGGTCACATGCGTGAT-ATGAGATGTATC-CCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATCAAGAGAAGGA-CACCATGTAGACAAGAGAGCTACGTGAAAGA
114501851 TAAAT
65 TAAAT
*
114501856 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGA-T-CAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
114501921 ATAAAT
64 ATAAAT
*
114501927 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGA-T-CAAGAGAAGGACACCATGTAGACAAGAGAGCTACG
114501986 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 20 0.17
69 1 0.01
70 1 0.01
71 99 0.82
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (69 bp):
GTAGCTAGGTCGCATGCGTGATCAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGAT
AAAT
Found at i:114501899 original size:41 final size:41
Alignment explanation
Indices: 114501854--114501971 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
114501844 TGAAAGATAA
114501854 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
114501895 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114501925 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114501966 ATGTAG
1 ATGTAG
114501972 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:114501911 original size:71 final size:71
Alignment explanation
Indices: 114501822--114501985 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114501812 GAGATGTATC
114501822 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114501887 AGGACA
66 AGGACA
114501893 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114501958 AGGACA
66 AGGACA
114501964 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
114501986 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:114506310 original size:15 final size:15
Alignment explanation
Indices: 114506290--114506322 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
114506280 TCTTTGGGTT
114506290 GAATCAGGTGAAACG
1 GAATCAGGTGAAACG
114506305 GAATCAGGTGAAACG
1 GAATCAGGTGAAACG
114506320 GAA
1 GAA
114506323 AGCTTACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.33, T:0.12
Consensus pattern (15 bp):
GAATCAGGTGAAACG
Found at i:114512124 original size:28 final size:28
Alignment explanation
Indices: 114512059--114512159 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
114512049 ATAGTGAATC
*
114512059 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
114512088 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
114512116 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
114512146 CGCACACTTAGTGC
1 CGCACACTTAGTGC
114512160 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:114524323 original size:30 final size:30
Alignment explanation
Indices: 114524287--114524417 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
114524277 GACAAGATTG
* * * * *
114524287 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
114524317 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
114524345 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
114524375 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
114524404 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
114524418 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:114524378 original size:58 final size:58
Alignment explanation
Indices: 114524287--114524417 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
114524277 GACAAGATTG
* * * * * *
114524287 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
114524345 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
114524404 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
114524418 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:114529761 original size:24 final size:24
Alignment explanation
Indices: 114529729--114529815 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
114529719 AATCTCAAAT
114529729 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
114529753 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
114529777 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
114529801 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
114529816 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:114529781 original size:48 final size:48
Alignment explanation
Indices: 114529729--114529837 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
114529719 AATCTCAAAT
** *
114529729 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
114529777 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
114529825 GCACTATGTGTGC
1 GCACTATGTGTGC
114529838 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:114529828 original size:24 final size:24
Alignment explanation
Indices: 114529729--114529837 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
114529719 AATCTCAAAT
*
114529729 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
114529753 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
114529777 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
114529801 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
114529825 GCACTATGTGTGC
1 GCACTATGTGTGC
114529838 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:114533822 original size:48 final size:48
Alignment explanation
Indices: 114533751--114534015 Score: 318
Period size: 48 Copynumber: 5.5 Consensus size: 48
114533741 ATACTAGGGT
* * *
114533751 TATGTGAGCCAGTGTAAGGCCATGTTTGGAACATGGCATCGGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCGA
* * **
114533799 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATCGCATCGACATATA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCGA
* *
114533847 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCTCGA
1 TATGTGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGACCTCGA
* * * * **
114533895 TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCAACATTTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCGA
* * *
114533943 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGA-CCTCGA
* *
114533991 CATGTAAGCTAGTGTAAGACCATGT
1 TATGTGAGCTAGTGTAAGACCATGT
114534016 CTGGGACTTG
Statistics
Matches: 182, Mismatches: 32, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
47 4 0.02
48 175 0.96
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCGA
Found at i:114533925 original size:96 final size:96
Alignment explanation
Indices: 114533751--114534015 Score: 381
Period size: 96 Copynumber: 2.8 Consensus size: 96
114533741 ATACTAGGGT
* * * * *
114533751 TATGTGAGCCAGTGTAAGGCCATGT-TTGGAACATGGCATCGGCCTCGATATGTGAGCTAGTGTA
1 TATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCTCGATATGTGAGCTAGTGTA
*
114533815 AGACCATGTTTGGAACATCGCATCGACATATA
65 AGACCATGTTTGGAACATCGCATCAACATATA
*
114533847 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATGTGAGCTAGTGTAA
* * *
114533912 GATCATGTTTGGAACATGGCATCAACATTTA
66 GACCATGTTTGGAACATCGCATCAACATATA
* * *
114533943 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGACATGTAAGCTAGTGTA
1 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGA-CCTCGATATGTGAGCTAGTGTA
114534007 AGACCATGT
65 AGACCATGT
114534016 CTGGGACTTG
Statistics
Matches: 152, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.01
96 148 0.97
97 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGATATGTGAGCTAGTGTAA
GACCATGTTTGGAACATCGCATCAACATATA
Found at i:114534011 original size:144 final size:144
Alignment explanation
Indices: 114533751--114534027 Score: 369
Period size: 144 Copynumber: 1.9 Consensus size: 144
114533741 ATACTAGGGT
* ** * *
114533751 TATGTGAGCCAGTGTAAGGCCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATCGATATGAGAGCTAGTGTAA
* * *
114533816 GACCATGTTTGGAACATCGCATCGACATATATATGAGAGCTAGTGTAAGACCATGTCTAGGACAT
66 GACCATGTCTGGAACATCGCATCGACATAGACATGAGAGCTAGTGTAAGACCATGTCTAGGACAT
114533881 GGCATCGACCTCGA
131 GGCATCGACCTCGA
* **
114533895 TATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATCGATATGAGAGCTAGTGTAA
* * * * *
114533960 GACCATGTCTGGGACATGGCATC-AGCCTCGACATGTA-AGCTAGTGTAAGACCATGTCTGGGAC
66 GACCATGTCTGGAACATCGCATCGA-CATAGACATG-AGAGCTAGTGTAAGACCATGTCTAGGAC
*
114534023 TTGGC
129 ATGGC
114534028 GACGACATCT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
143 1 0.01
144 112 0.98
145 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (144 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATCGATATGAGAGCTAGTGTAA
GACCATGTCTGGAACATCGCATCGACATAGACATGAGAGCTAGTGTAAGACCATGTCTAGGACAT
GGCATCGACCTCGA
Found at i:114535184 original size:8 final size:8
Alignment explanation
Indices: 114535166--114535195 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
114535156 ATACAAATTA
114535166 TGTGTATTT
1 TGTG-ATTT
114535175 TGTGATTT
1 TGTGATTT
114535183 TGTGATTT
1 TGTGATTT
114535191 TGTGA
1 TGTGA
114535196 AGTAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:114542401 original size:8 final size:8
Alignment explanation
Indices: 114542383--114542412 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
114542373 ATGCAAATTA
114542383 TGTGTATTT
1 TGTG-ATTT
114542392 TGTGATTT
1 TGTGATTT
114542400 TGTGATTT
1 TGTGATTT
114542408 TGTGA
1 TGTGA
114542413 AGTAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:114545258 original size:93 final size:93
Alignment explanation
Indices: 114545151--114545321 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
114545141 GCCCCTAAGT
* *
114545151 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114545216 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
114545244 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114545309 CGAGTTCGGATGC
66 CGAGTTCGGATGC
114545322 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:114545318 original size:46 final size:46
Alignment explanation
Indices: 114545146--114545318 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
114545136 AACCCGCCCC
* * *
114545146 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
114545192 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
114545240 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
114545285 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
114545319 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:114552307 original size:15 final size:15
Alignment explanation
Indices: 114552287--114552351 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
114552277 GTATCTTGGG
114552287 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
114552302 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
114552317 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
114552332 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
114552346 TTTCTT
1 TTTCTT
114552352 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:114552319 original size:30 final size:31
Alignment explanation
Indices: 114552283--114552351 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
114552273 TATCGTATCT
114552283 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
114552313 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
114552343 -GGTTTTCTT
1 TGGGTTTCTT
114552352 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:114555976 original size:39 final size:39
Alignment explanation
Indices: 114555898--114556040 Score: 232
Period size: 39 Copynumber: 3.6 Consensus size: 39
114555888 CCGCACAAAG
* * *
114555898 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTTGCACAATT
*
114555938 GCCTTCGGGCTTAGCCCGGATATCATAACTTGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTTGCACAATT
*
114555977 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTTGCACAATT
114556016 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
114556041 CTCGAACATT
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTTGCACAATT
Found at i:114562353 original size:40 final size:40
Alignment explanation
Indices: 114562161--114562346 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
114562151 TCGAATGATG
* * *
114562161 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
114562201 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
114562241 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
114562281 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
114562322 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
114562347 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:114562353 original size:80 final size:80
Alignment explanation
Indices: 114562161--114562379 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
114562151 TCGAATGATG
* * **
114562161 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
114562225 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
114562241 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
114562305 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
114562322 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
114562380 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:114585531 original size:93 final size:93
Alignment explanation
Indices: 114585419--114585590 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
114585409 GCCCATAAGT
* *
114585419 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114585484 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
114585512 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114585577 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
114585591 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:114585586 original size:46 final size:46
Alignment explanation
Indices: 114585411--114585586 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
114585401 TGTAACCCGC
* * *
114585411 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
114585457 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
114585507 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
114585550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
114585587 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:114588006 original size:29 final size:29
Alignment explanation
Indices: 114587967--114588054 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
114587957 CAAAGATAAC
*
114587967 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
114587996 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
114588025 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
114588055 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:114588025 original size:15 final size:15
Alignment explanation
Indices: 114587967--114588045 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
114587957 CAAAGATAAC
*
114587967 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
114587981 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
114587996 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
114588010 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
114588025 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
114588040 AAGAAA
1 AAGAAA
114588046 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:114588054 original size:15 final size:15
Alignment explanation
Indices: 114587978--114588054 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
114587968 AGAAAACCGA
114587978 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
114587993 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
114588007 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
114588021 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
114588037 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
114588052 ATA
1 ATA
114588055 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:114591115 original size:93 final size:93
Alignment explanation
Indices: 114591003--114591174 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
114590993 GCCCATAAGT
* *
114591003 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114591068 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
114591096 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114591161 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
114591175 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:114591170 original size:46 final size:46
Alignment explanation
Indices: 114590995--114591170 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
114590985 TGTAACCCGC
* * *
114590995 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
114591041 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
114591091 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
114591134 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
114591171 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:114593595 original size:30 final size:30
Alignment explanation
Indices: 114593551--114593639 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
114593541 CAAAGATAAC
*
114593551 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
114593580 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
114593610 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
114593640 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:114593599 original size:15 final size:14
Alignment explanation
Indices: 114593551--114593633 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
114593541 CAAAGATAAC
*
114593551 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
114593565 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
114593580 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
114593595 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
114593610 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
114593625 AAGAAACCC
1 AAGAAACCC
114593634 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:114593639 original size:15 final size:15
Alignment explanation
Indices: 114593562--114593639 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
114593552 AGAAAACCGA
114593562 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
114593577 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
114593591 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
114593606 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
114593622 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
114593637 ATA
1 ATA
114593640 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:114594827 original size:29 final size:27
Alignment explanation
Indices: 114594793--114594895 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
114594783 TACTCGATCA
*
114594793 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
114594822 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
114594851 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
114594880 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
114594896 ATCTCGTCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:114602852 original size:29 final size:28
Alignment explanation
Indices: 114602820--114602892 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
114602810 ATTTAAGCCT
*
114602820 GCACACATAGTGCCATATAGTCCAAACTC
1 GCACAC-TAGTGCCATACAGTCCAAACTC
* * *
114602849 GCACACTTAGTGCCATACATTTCAAGCTC
1 GCACAC-TAGTGCCATACAGTCCAAACTC
114602878 GCACACTCAGTGCCA
1 GCACACT-AGTGCCA
114602893 ATCTCGTCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 37 0.97
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
GCACACTAGTGCCATACAGTCCAAACTC
Found at i:114607775 original size:40 final size:40
Alignment explanation
Indices: 114607566--114607747 Score: 262
Period size: 40 Copynumber: 4.5 Consensus size: 40
114607556 CTAAGTCCCA
* * * *
114607566 AAGGC-TTTGTGCTAAGTGACTATATTCGGACTAAGATCCG
1 AAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCG
114607606 AAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCG
*
114607646 AAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATTCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCG
114607686 AAGGCATTTGTGCGAGTTACTAAATCCGGGA-TAAG-TCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCC-GGACTAAGAT-CCG
*
114607726 AAGGCATTTGTGCGAGCTACTA
1 AAGGCATTTGTGCGAGTTACTA
114607748 TAACCGGGCT
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCG
Found at i:114607789 original size:40 final size:40
Alignment explanation
Indices: 114607603--114607789 Score: 111
Period size: 40 Copynumber: 4.7 Consensus size: 40
114607593 GGACTAAGAT
** *
114607603 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
114607643 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
* ** *
114607683 TCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
114607723 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
*
114607763 CCGAAGGTATTTGAACGAG-TAGCTATA
1 CCGAAGGCATTTGAACGAGCTA-CTATA
114607790 TCTGGTTAAA
Statistics
Matches: 135, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 127 0.94
41 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:114623631 original size:40 final size:40
Alignment explanation
Indices: 114623555--114623776 Score: 286
Period size: 40 Copynumber: 5.6 Consensus size: 40
114623545 AACCCAAGTA
* * *
114623555 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
114623594 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * * **
114623634 ACTTTGGGACTTAGCCCGGATATAATCTCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
114623674 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * * *
114623714 CCTTCAGGACTTAGCCCGAATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
114623754 CCTTCGAGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
114623777 CATTCGAATA
Statistics
Matches: 157, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 12 0.08
40 142 0.90
41 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:114625224 original size:14 final size:14
Alignment explanation
Indices: 114625202--114625244 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
114625192 TTTCATTTTG
114625202 TAACATAAAATTAT
1 TAACATAAAATTAT
*
114625216 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
114625229 TAACACAAAATAAT
1 TAACATAAAATTAT
114625243 TA
1 TA
114625245 TAATATGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:114625238 original size:13 final size:13
Alignment explanation
Indices: 114625202--114625240 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
114625192 TTTCATTTTG
114625202 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
114625216 TAGCATAAAATAT
1 TAACATAAAATAT
*
114625229 TAACACAAAATA
1 TAACATAAAATA
114625241 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:114626166 original size:25 final size:25
Alignment explanation
Indices: 114626132--114626183 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
114626122 TTGTCTAAAT
*
114626132 GGTCATGGTCCTAATGAAGTCGCAC
1 GGTCATGGTCCTAATAAAGTCGCAC
114626157 GGTCATGGTCCTAATAAAGTCGCAC
1 GGTCATGGTCCTAATAAAGTCGCAC
114626182 GG
1 GG
114626184 CTAAGACACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (25 bp):
GGTCATGGTCCTAATAAAGTCGCAC
Found at i:114629310 original size:28 final size:29
Alignment explanation
Indices: 114629259--114629314 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
114629249 ACAGGGGTTT
* *
114629259 TCACATGGCCAAGCACACTCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
*
114629288 TCACACGGCCTAG-ACACGCCCGTGTCC
1 TCACACGGCCAAGCACACGCCCGTGTCC
114629315 AAAACCCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.16
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:114630943 original size:40 final size:40
Alignment explanation
Indices: 114630906--114631090 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
114630896 GCTACTCGTT
*
114630906 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
114630946 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
114630986 CCAATACCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
114631025 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
114631066 CAAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
114631091 ATATCATTCG
Statistics
Matches: 123, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 62 0.50
41 26 0.21
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:114631006 original size:79 final size:81
Alignment explanation
Indices: 114630906--114631091 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
114630896 GCTACTCGTT
* * *
114630906 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAAAGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
114630969 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
114630986 CCAATA-CCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 -CAAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
114631049 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
114631066 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAAGCCTTCGGGACTTAGCCCGGA
114631092 TATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 21 0.23
81 14 0.16
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:114641955 original size:22 final size:23
Alignment explanation
Indices: 114641914--114641973 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
114641904 TGTTTCTCTT
**
114641914 CTTCTTTTTTCTTTGCTCATT-TC
1 CTTC-TTTTTCTTTTTTCATTCTC
*
114641937 TTTCTTTTTCTTTTTTCATTCTC
1 CTTCTTTTTCTTTTTTCATTCTC
*
114641960 CTTC-CTTTCTTTTT
1 CTTCTTTTTCTTTTT
114641974 CTTTTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 23 0.74
23 8 0.26
ACGTcount: A:0.03, C:0.25, G:0.02, T:0.70
Consensus pattern (23 bp):
CTTCTTTTTCTTTTTTCATTCTC
Found at i:114641967 original size:28 final size:29
Alignment explanation
Indices: 114641910--114641980 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
114641900 AGAATGTTTC
* * *
114641910 TCTTCTTCTTTTTTCTTTGCTCATTTCTT
1 TCTTTTTCTTTTTTCATTGCTCATTCCTT
*
114641939 TCTTTTTCTTTTTTCATT-CTCCTTCCTT
1 TCTTTTTCTTTTTTCATTGCTCATTCCTT
114641967 TCTTTTTCTTTTTT
1 TCTTTTTCTTTTTT
114641981 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
28 22 0.58
29 16 0.42
ACGTcount: A:0.03, C:0.24, G:0.01, T:0.72
Consensus pattern (29 bp):
TCTTTTTCTTTTTTCATTGCTCATTCCTT
Found at i:114645466 original size:28 final size:27
Alignment explanation
Indices: 114645430--114645527 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 27
114645420 GTGTTAACTG
*
114645430 GGCCTTAGCCCATATCAATATTAATCTA
1 GGCC-TAGCCCATATCAATATCAATCTA
* * *
114645458 GGCCATAGCCC-TTTACAGTATCAGAATATA
1 GGCC-TAGCCCATAT-CAATATC--AATCTA
114645488 TTGGCCTAGCCCATATCAATATCAATCTA
1 --GGCCTAGCCCATATCAATATCAATCTA
114645517 GGCCGTAGCCC
1 GGCC-TAGCCC
114645528 TATTACAAGT
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
27 6 0.11
28 21 0.38
29 5 0.09
30 5 0.09
31 12 0.22
32 6 0.11
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GGCCTAGCCCATATCAATATCAATCTA
Found at i:114645499 original size:59 final size:60
Alignment explanation
Indices: 114645428--114645563 Score: 181
Period size: 59 Copynumber: 2.3 Consensus size: 60
114645418 CAGTGTTAAC
*
114645428 TGGGCCTTAGCCCATATCAATATTAATCTAGGCCATAGCCCT-TTAC-AGTATC-AGAATATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAG--TCGAG-ATATAT
*
114645489 T-GGCCTAGCCCATATCAATATCAATCTAGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGTCGAGATATAT
*
114645548 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
114645564 TAACATAGTT
Statistics
Matches: 68, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
59 42 0.62
60 23 0.34
61 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:114647461 original size:9 final size:8
Alignment explanation
Indices: 114647434--114647459 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
114647424 CCGTACCTAG
114647434 AAGAAAAA
1 AAGAAAAA
114647442 AAGAAAAA
1 AAGAAAAA
114647450 AAGAAAAA
1 AAGAAAAA
114647458 AA
1 AA
114647460 AGCTCTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:114647944 original size:20 final size:21
Alignment explanation
Indices: 114647903--114647944 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
114647893 GCATTCGGCC
*
114647903 ATGGTAGAAAGTAGATGTGAA
1 ATGGTAGAAAGTAGAAGTGAA
*
114647924 ATGGTAGTAAGT-GAAGTGAA
1 ATGGTAGAAAGTAGAAGTGAA
114647944 A
1 A
114647945 AATGTTAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (21 bp):
ATGGTAGAAAGTAGAAGTGAA
Found at i:114648768 original size:40 final size:40
Alignment explanation
Indices: 114648713--114648917 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
114648703 CGGATGATAA
114648713 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
114648753 CGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
114648793 CGAAGGCATTTATGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
114648833 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
114648873 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
114648912 CGAAGG
1 CGAAGG
114648918 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.10
40 140 0.90
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:114653434 original size:27 final size:27
Alignment explanation
Indices: 114653382--114653436 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
114653372 GAAATCAGTG
*
114653382 TTAACTGGGCCTTAACCCATATCAATA
1 TTAACTGGGCCATAACCCATATCAATA
* *
114653409 TTAATCTGGGCCATAGCCCTTA-CAATA
1 TTAA-CTGGGCCATAACCCATATCAATA
114653436 T
1 T
114653437 CAGAGTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (27 bp):
TTAACTGGGCCATAACCCATATCAATA
Found at i:114653474 original size:59 final size:59
Alignment explanation
Indices: 114653387--114653522 Score: 168
Period size: 59 Copynumber: 2.3 Consensus size: 59
114653377 CAGTGTTAAC
* *
114653387 TGGGCCTTAACCCATATCAATATTAATCTGGGCCATAGCCC-TTACAATATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAA-ATCGAGA-TATAT
* * *
114653447 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAAATCGAGATATAT
*
114653507 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
114653523 TAACATAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
59 30 0.45
60 28 0.42
61 9 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAAATCGAGATATAT
Found at i:114654511 original size:29 final size:29
Alignment explanation
Indices: 114654471--114654529 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
114654461 AAGCCCTTTG
* * *
114654471 TTGTACTTCCCCTTGCTTACGCTAGCACT
1 TTGTACGTCCCCTTGCTCACGCTAACACT
114654500 TTGTACGTCCCCTTGCTCACGCTAACACT
1 TTGTACGTCCCCTTGCTCACGCTAACACT
114654529 T
1 T
114654530 ACAAAACCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.15, C:0.36, G:0.14, T:0.36
Consensus pattern (29 bp):
TTGTACGTCCCCTTGCTCACGCTAACACT
Found at i:114656247 original size:3 final size:3
Alignment explanation
Indices: 114656239--114656280 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
114656229 AAACATACTA
114656239 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
114656281 TAAAACATCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:114656444 original size:16 final size:18
Alignment explanation
Indices: 114656425--114656458 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
114656415 CATACTAGAT
114656425 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
114656441 CCAAAACGATAGATAGTA
1 CCAAAACGATAGATAGTA
114656459 TGACGAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:114663621 original size:40 final size:40
Alignment explanation
Indices: 114663513--114663722 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
114663503 CGGGATTTAA
* * * * *
114663513 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
114663553 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
114663593 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
114663633 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
114663673 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
114663713 CCGGATATAT
1 CCGGATATAT
114663723 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:114671784 original size:50 final size:50
Alignment explanation
Indices: 114671713--114671851 Score: 199
Period size: 40 Copynumber: 3.0 Consensus size: 50
114671703 CGGGTCTTAG
114671713 CCGGATATATCAACTCGCACGAATGCCTTCGGGTTTAGCCCGGATATAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTTTAGCCCGGATATAGC
114671763 CCGGATATATCAACTCGCACGAATGCCTTCGGG--T----C---T-TAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTTTAGCCCGGATATAGC
114671803 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGT-TTAGCCCGGATATA
114671852 TTTCAATGTT
Statistics
Matches: 78, Mismatches: 0, Indels: 21
0.79 0.00 0.21
Matches are distributed among these distances:
40 37 0.47
41 1 0.01
43 1 0.01
44 1 0.01
47 1 0.01
48 1 0.01
50 34 0.44
51 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (50 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTTTAGCCCGGATATAGC
Found at i:114673443 original size:46 final size:46
Alignment explanation
Indices: 114673376--114673548 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
114673366 TGTAACCCGC
*
114673376 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
114673422 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
114673472 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC--TCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
114673513 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
114673549 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 1 0.01
43 2 0.02
44 29 0.26
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:114673541 original size:91 final size:92
Alignment explanation
Indices: 114673384--114673553 Score: 306
Period size: 91 Copynumber: 1.8 Consensus size: 92
114673374 GCCCATAAGT
*
114673384 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
114673449 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
114673477 GAACTCGGACTCAACTCAACGAGTTCGGAC-TCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
114673541 GAGTTCGGATGCC
66 GAGTTCGGATGCC
114673554 CAAATATCCA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:114675962 original size:30 final size:30
Alignment explanation
Indices: 114675918--114676006 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
114675908 CAAAGATAAC
114675918 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
114675947 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
114675977 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
114676007 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:114675966 original size:15 final size:15
Alignment explanation
Indices: 114675918--114675997 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
114675908 CAAAGATAAC
*
114675918 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
114675932 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
114675947 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
114675962 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
114675977 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
114675992 AAGAAA
1 AAGAAA
114675998 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:114676006 original size:15 final size:15
Alignment explanation
Indices: 114675929--114676006 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
114675919 AGAAAACCGA
114675929 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
114675944 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
114675958 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
114675973 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
114675989 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
114676004 ATA
1 ATA
114676007 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:114679054 original size:92 final size:93
Alignment explanation
Indices: 114678940--114679110 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
114678930 GCCCATAAGT
* *
114678940 GAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114679005 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
114679033 GAACTC-GACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
114679097 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
114679111 CAAATATCCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 68 0.92
93 6 0.08
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:114679106 original size:46 final size:46
Alignment explanation
Indices: 114678932--114679106 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
114678922 TGTAACCCGC
* * * *
114678932 CCATAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
114678978 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
114679028 -C-TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
114679070 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
114679107 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
42 3 0.03
43 1 0.01
44 2 0.02
45 9 0.08
46 80 0.73
47 8 0.07
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:114679125 original size:46 final size:45
Alignment explanation
Indices: 114678983--114679125 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
114678973 CGCATCCATA
* *
114678983 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
114679031 A-CGAACTC-GACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
114679075 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
114679121 AGTGA
1 AGTGA
114679126 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
42 4 0.05
44 1 0.01
45 6 0.08
46 54 0.71
47 6 0.08
48 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:114682633 original size:40 final size:40
Alignment explanation
Indices: 114682574--114682715 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
114682564 AAATTGAATG
* * *
114682574 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
114682614 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
114682654 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
114682694 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
114682716 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:114682716 original size:40 final size:39
Alignment explanation
Indices: 114682613--114682741 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
114682603 TGCTGGAAAT
* * *
114682613 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
114682653 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
114682693 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
114682733 TATATCCGG
1 TATATCCGG
114682742 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:114690652 original size:40 final size:40
Alignment explanation
Indices: 114690586--114690752 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
114690576 AAATTGAATG
* * *
114690586 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
114690625 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
114690665 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
114690705 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
114690745 ATATCCGG
1 ATATCCGG
114690753 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:114695798 original size:68 final size:70
Alignment explanation
Indices: 114695726--114695923 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
114695716 ACACCCTGTA
* * * *
114695726 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
114695788 ATAAAT
65 ATAAAT
*
114695794 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
114695859 ATAAAT
65 ATAAAT
*
114695865 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
114695924 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:114695837 original size:41 final size:41
Alignment explanation
Indices: 114695792--114695909 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
114695782 TGAAAGATAA
114695792 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
114695833 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114695863 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114695904 ATGTAG
1 ATGTAG
114695910 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:114695849 original size:71 final size:71
Alignment explanation
Indices: 114695760--114695923 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114695750 GAGATGTATC
114695760 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114695825 AGGACA
66 AGGACA
114695831 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114695896 AGGACA
66 AGGACA
114695902 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
114695924 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:114703366 original size:68 final size:70
Alignment explanation
Indices: 114703294--114703491 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
114703284 ACACCCTGTA
* * * *
114703294 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
114703356 ATAAAT
65 ATAAAT
*
114703362 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
114703427 ATAAAT
65 ATAAAT
*
114703433 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
114703492 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:114703405 original size:41 final size:41
Alignment explanation
Indices: 114703360--114703477 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
114703350 TGAAAGATAA
114703360 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
114703401 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114703431 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114703472 ATGTAG
1 ATGTAG
114703478 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:114703417 original size:71 final size:71
Alignment explanation
Indices: 114703328--114703491 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114703318 GAGATGTATC
114703328 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114703393 AGGACA
66 AGGACA
114703399 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114703464 AGGACA
66 AGGACA
114703470 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
114703492 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:114707247 original size:40 final size:39
Alignment explanation
Indices: 114707203--114707315 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
114707193 GTTATAATAG
*
114707203 CTCGCATAAATGCCTTCGGGACTAATCCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGGACTAA-CCCGGATTTGGGAA
* * *
114707243 CTCGCACAAATGCCTTCGGGAATTAACCCGGTTTTGGTAA
1 CTCGCACAAATGCCTTCGGG-ACTAACCCGGATTTGGGAA
* * *
114707283 CTTGCACAGATGCCTTCGGGACTTAGCCCGGAT
1 CTCGCACAAATGCCTTCGGGAC-TAACCCGGAT
114707316 ACCATTCAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.02
40 57 0.92
41 4 0.06
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGGACTAACCCGGATTTGGGAA
Found at i:114711488 original size:17 final size:17
Alignment explanation
Indices: 114711468--114711501 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
114711458 AAGGATATGC
114711468 AATCTTAGATATGATAT
1 AATCTTAGATATGATAT
114711485 AATCTTAGATATGATAT
1 AATCTTAGATATGATAT
114711502 GATATGATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
AATCTTAGATATGATAT
Found at i:114715746 original size:20 final size:22
Alignment explanation
Indices: 114715708--114715747 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
114715698 GAAAAAATAT
114715708 TTTTTTAATAAAATATTTATGA
1 TTTTTTAATAAAATATTTATGA
114715730 TTTTTTAA-AAAAT-TTTAT
1 TTTTTTAATAAAATATTTAT
114715748 CAAATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (22 bp):
TTTTTTAATAAAATATTTATGA
Found at i:114719786 original size:28 final size:28
Alignment explanation
Indices: 114719708--114719814 Score: 119
Period size: 28 Copynumber: 3.9 Consensus size: 28
114719698 CTTCGTATGG
* **
114719708 AATTCGCCACAAGGGC-TAACCTTTCAT
1 AATTCGCCACAAAGGCTTATTCTTTCAT
*
114719735 AATTCGCCAC-GAGGCTTATTCTTTCAT
1 AATTCGCCACAAAGGCTTATTCTTTCAT
*
114719762 AGTTCGCCACAAAGGCTTATTCTTTCAT
1 AATTCGCCACAAAGGCTTATTCTTTCAT
*** *
114719790 AATTTTTCGCAAAGGCTTATTCTTT
1 AATTCGCCACAAAGGCTTATTCTTT
114719815 TCTGACATGT
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
26 3 0.04
27 28 0.42
28 36 0.54
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (28 bp):
AATTCGCCACAAAGGCTTATTCTTTCAT
Found at i:114721243 original size:24 final size:24
Alignment explanation
Indices: 114721216--114721269 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
114721206 TTTCTTTCCT
*
114721216 TTGCATT-CATCCCATGCATTTGCA
1 TTGCATTGCATCACATGCA-TTGCA
**
114721240 TTGCATTGCATCATGTGCATTGCA
1 TTGCATTGCATCACATGCATTGCA
114721264 TTGCAT
1 TTGCAT
114721270 CATTTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (24 bp):
TTGCATTGCATCACATGCATTGCA
Found at i:114721258 original size:19 final size:19
Alignment explanation
Indices: 114721236--114721279 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
114721226 CCCATGCATT
114721236 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
*
114721255 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
114721274 TGCATT
1 TGCATT
114721280 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:114723978 original size:61 final size:65
Alignment explanation
Indices: 114723902--114724023 Score: 198
Period size: 61 Copynumber: 1.9 Consensus size: 65
114723892 CATATAATAA
114723902 CACATCTAGTTAGGAGCATTTGATTCATTTC-A-TA-A-CATCCTAATTATTTGACATAAAGAAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATTATAGCATCCTAATTATTTGACATAAAGAAT
* *
114723963 CACATTTAGTTAGGAGCATTTGATTCATTTCAATTATAGCATCCTAATTATTTGGCATAAA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATTATAGCATCCTAATTATTTGACATAAA
114724024 CATGGATACA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
61 30 0.55
62 1 0.02
63 2 0.04
64 1 0.02
65 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (65 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATTATAGCATCCTAATTATTTGACATAAAGAAT
Found at i:114724271 original size:88 final size:87
Alignment explanation
Indices: 114724122--114724345 Score: 360
Period size: 88 Copynumber: 2.6 Consensus size: 87
114724112 AGCTGAAGAT
* *
114724122 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGAGGAGTAGATCAAAGACATAGCTAATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCG-GGAGCAGATCGAAGACATAGCTAATTTGGCT
*
114724187 TTCACGTGTTTACGTTAAAGCAG
65 TTCACGTGTTTACGTTAAAGCAA
*
114724210 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGC-GGGAGCAGATCGAAGACATAGCTAATTTGGCT
*
114724275 TTCACGTGTTTACGTTGAAGCAA
65 TTCACGTGTTTACGTTAAAGCAA
*
114724298 ATCCAAGATGATTTGGCATCTCTGTAGC-GGCGGAGAGCAGATCGAAGA
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGG-GAGCAGATCGAAGA
114724346 TAACAGATTT
Statistics
Matches: 128, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
86 2 0.02
87 17 0.13
88 108 0.84
89 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (87 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGAGCAGATCGAAGACATAGCTAATTTGGCTT
TCACGTGTTTACGTTAAAGCAA
Found at i:114724364 original size:44 final size:44
Alignment explanation
Indices: 114724307--114725450 Score: 1592
Period size: 44 Copynumber: 26.4 Consensus size: 44
114724297 AATCCAAGAT
*
114724307 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
114724351 GATTTGGCGTCTCTGTAGCGGCGG-GAAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAG-AGCAGATCGAAGATAACA
* * *
114724395 GATTTGGCGTCTCTGTAGCGGCGGGGAGTAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
114724439 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
114724483 AATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
114724527 GATTTGGCATCTCTATAGCGGCGGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
114724571 GATTTGGCGTCTCTGTAGCGGCGAAAAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
114724615 GATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
114724659 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATC-AATGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAA-GATAACA
* * *
114724703 GATTTGGCGTCTCTATAGCAGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
114724747 GATTTGGGCGTCTCTATAGCAGCGGAGAGCAGATCGAAGATAACA
1 GATTT-GGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
114724792 GATTTGGCGTCTCCGTAGCGGCGGAAAGAAGATAGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
114724836 GATTTGGCGTCTCCGTAGCGGCGGAGAACAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
114724880 GATTTGGCGTCTCTGTAGTGGCGGAGAGAAGATCGAAGATAAC-
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
114724923 -A--------CTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
114724958 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
114724998 GATTTGGCATCTTTGTAGCGGCGGAGAGTAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
114725042 GATTTGGCATCTCTGTAGCGGCAGAGAACAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
114725086 GATTTGACGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
114725130 GATTTGGCTTCTCTGTAGTGGCGAAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
114725170 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATTGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
114725214 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
114725258 GATTTGGCGTCTCCGTAGTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
114725302 TATTTGGCGTCTTTGTAGCGGTGGAGAGTAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
114725346 GATTTGGCGTCTCTGTAACGGCGGAGAGCAAATCGAAGTTAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
114725390 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAAATAAC-
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
114725433 GAATTTGGCGTCTCTGTA
1 G-ATTTGGCGTCTCTGTA
114725451 TTAGACGGGG
Statistics
Matches: 983, Mismatches: 93, Indels: 48
0.87 0.08 0.04
Matches are distributed among these distances:
34 31 0.03
36 1 0.00
40 72 0.07
42 1 0.00
43 4 0.00
44 828 0.84
45 46 0.05
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:114724929 original size:34 final size:34
Alignment explanation
Indices: 114724890--114724957 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
114724880 GATTTGGCGT
*
114724890 CTCTGTAGTGGCGGAGAGAAGATCGAAGATAACA
1 CTCTGTAGCGGCGGAGAGAAGATCGAAGATAACA
*
114724924 CTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 CTCTGTAGCGGCGGAGAGAAGATCGAAGATAACA
114724958 GATTTGGCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.34, C:0.18, G:0.32, T:0.16
Consensus pattern (34 bp):
CTCTGTAGCGGCGGAGAGAAGATCGAAGATAACA
Found at i:114725987 original size:19 final size:19
Alignment explanation
Indices: 114725963--114726000 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
114725953 TTGAGATTGC
*
114725963 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
114725982 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
114726001 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:114726034 original size:2 final size:2
Alignment explanation
Indices: 114726027--114726066 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
114726017 TTTGCTTTAA
* *
114726027 AT AT AT AT -T AT GT AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114726067 AACCATTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:114726123 original size:19 final size:19
Alignment explanation
Indices: 114726099--114726135 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
114726089 GAAATGAATA
*
114726099 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
114726118 ATTTCAAGCAAATAGGTT
1 ATTTCAAGCAAATAGGTT
114726136 AGCTATCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:114727064 original size:19 final size:20
Alignment explanation
Indices: 114727031--114727070 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
114727021 ATATATATAT
114727031 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
114727050 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
114727070 A
1 A
114727071 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:114727347 original size:15 final size:17
Alignment explanation
Indices: 114727314--114727355 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 17
114727304 AGGTTAGGTG
*
114727314 TTTTTCTTTTTCTTCAT
1 TTTTTATTTTTCTTCAT
114727331 TTTTTATTTTT-TT-AT
1 TTTTTATTTTTCTTCAT
114727346 TTTTTATTTT
1 TTTTTATTTT
114727356 GGGTTGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 12 0.50
16 2 0.08
17 10 0.42
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTATTTTTCTTCAT
Found at i:114727834 original size:49 final size:49
Alignment explanation
Indices: 114727772--114727872 Score: 148
Period size: 49 Copynumber: 2.1 Consensus size: 49
114727762 TAAATTATGC
* *
114727772 TATACATTTCTAAACTTGGTCTTACACTGTCTACACTCTTATCACTATT
1 TATACATTGCTAAACTTAGTCTTACACTGTCTACACTCTTATCACTATT
* * * *
114727821 TATACATTGCTAAACTTAGTCTTCCACTTTTTACATTCTTATCACTATT
1 TATACATTGCTAAACTTAGTCTTACACTGTCTACACTCTTATCACTATT
114727870 TAT
1 TAT
114727873 CCCTTCTAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.27, C:0.23, G:0.05, T:0.46
Consensus pattern (49 bp):
TATACATTGCTAAACTTAGTCTTACACTGTCTACACTCTTATCACTATT
Found at i:114729160 original size:16 final size:17
Alignment explanation
Indices: 114729138--114729181 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
114729128 CATCCCATAA
114729138 TCATTTCTCATATTTTC
1 TCATTTCTCATATTTTC
*
114729155 -CATTTC-AATATTTTC
1 TCATTTCTCATATTTTC
114729170 TCA--TCTCATATT
1 TCATTTCTCATATT
114729182 CATTTCTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TCATTTCTCATATTTTC
Found at i:114729171 original size:43 final size:43
Alignment explanation
Indices: 114729123--114729208 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
114729113 TCATATTTCA
*
114729123 TTTCTCATCCCATAATCATTTCTCATATTT-TCCATTTCAATAT
1 TTTCTCATCCCATAATCATTTCTCATATTTGT-CATTTAAATAT
* * *
114729166 TTTCTCATCTCATATTCATTTCTCATCTTTGTCATTTAAATAT
1 TTTCTCATCCCATAATCATTTCTCATATTTGTCATTTAAATAT
114729209 CAATCACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.23, G:0.01, T:0.51
Consensus pattern (43 bp):
TTTCTCATCCCATAATCATTTCTCATATTTGTCATTTAAATAT
Found at i:114729628 original size:16 final size:16
Alignment explanation
Indices: 114729578--114729630 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
114729568 CAATTTGATA
*
114729578 ATAATC-ACATTTTTC
1 ATAATCAACATATTTC
*
114729593 TTAATACAA-ATATATTC
1 ATAAT-CAACATAT-TTC
114729610 ATAATCAACATATTTC
1 ATAATCAACATATTTC
114729626 ATAAT
1 ATAAT
114729631 ATACAAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 4 0.13
16 15 0.48
17 12 0.39
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAATCAACATATTTC
Found at i:114730088 original size:86 final size:86
Alignment explanation
Indices: 114729943--114730115 Score: 328
Period size: 86 Copynumber: 2.0 Consensus size: 86
114729933 TTTAATTTAG
114729943 TCCCTAAACCGAGACTAATTTTAAGCTTCACAATTAGCTTCATATTTTTATACTAATTTCACTCT
1 TCCCTAAACCGAGACTAATTTTAAGCTTCACAATTAGCTTCATATTTTTATACTAATTTCACTCT
114730008 AGACCACATTTAACTTTCTCT
66 AGACCACATTTAACTTTCTCT
*
114730029 TCCCTAAACCGAGACTAATTTTAAGCTTCACAATTAGCTTCATATTTTTATACTAATTTCACTTT
1 TCCCTAAACCGAGACTAATTTTAAGCTTCACAATTAGCTTCATATTTTTATACTAATTTCACTCT
*
114730094 AGACCACATTTAGCTTTCTCT
66 AGACCACATTTAACTTTCTCT
114730115 T
1 T
114730116 TTCCAATTCA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (86 bp):
TCCCTAAACCGAGACTAATTTTAAGCTTCACAATTAGCTTCATATTTTTATACTAATTTCACTCT
AGACCACATTTAACTTTCTCT
Found at i:114733475 original size:27 final size:27
Alignment explanation
Indices: 114733445--114733585 Score: 146
Period size: 27 Copynumber: 5.2 Consensus size: 27
114733435 GTGACGAAGT
*
114733445 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
114733472 CACCAGA-ACAGATATATGAGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* * * *
114733499 CACCAAAT-TAGATAATAGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
114733526 CACCAGA-ACAGATATATGTGGCAGAAC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
114733553 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
114733580 CACCAG
1 CACCAG
114733586 GACGCTTCCT
Statistics
Matches: 93, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
26 9 0.10
27 80 0.86
28 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:114733527 original size:54 final size:54
Alignment explanation
Indices: 114733445--114733585 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
114733435 GTGACGAAGT
* *
114733445 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGAGGCAGAGC
1 CACCAGAT-TAGATAATTGTGGCATAGCCACCAGAACAGATATATGAGGCAGAAC
* * *
114733499 CACCAAATTAGATAATAGTGGCATAGCCACCAGAACAGATATATGTGGCAGAAC
1 CACCAGATTAGATAATTGTGGCATAGCCACCAGAACAGATATATGAGGCAGAAC
*
114733553 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATTAGATAATTGTGGCATAGCCACCAG
114733586 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 5 0.06
54 73 0.94
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATTAGATAATTGTGGCATAGCCACCAGAACAGATATATGAGGCAGAAC
Found at i:114754008 original size:29 final size:29
Alignment explanation
Indices: 114753969--114754043 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
114753959 GGTTGAGAGA
* *
114753969 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
114753998 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
114754027 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
114754044 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:114754386 original size:12 final size:12
Alignment explanation
Indices: 114754369--114754396 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
114754359 TATTATTTTA
114754369 TTTTTTTAATAT
1 TTTTTTTAATAT
114754381 TTTTTTTAATAT
1 TTTTTTTAATAT
114754393 TTTT
1 TTTT
114754397 AAATATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTAATAT
Found at i:114754404 original size:24 final size:25
Alignment explanation
Indices: 114754377--114754438 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 25
114754367 TATTTTTTTA
114754377 ATATTTTTTTTAATAT-TTTTAAAT
1 ATATTTTTTTTAATATATTTTAAAT
** *
114754401 ATATTTGATTTATTATATTTTAAAT
1 ATATTTTTTTTAATATATTTTAAAT
114754426 -T-TTTTTATTTAAT
1 ATATTTTT-TTTAAT
114754439 GAAATAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
23 3 0.10
24 19 0.63
25 8 0.27
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (25 bp):
ATATTTTTTTTAATATATTTTAAAT
Found at i:114758078 original size:18 final size:19
Alignment explanation
Indices: 114758012--114758082 Score: 85
Period size: 18 Copynumber: 3.9 Consensus size: 19
114758002 TCCCAACTAT
* *
114758012 TGTATACGTGAACAGT-AC
1 TGTATACGTAAATAGTGAC
114758030 TGTATACGTAAATAGT-AC
1 TGTATACGTAAATAGTGAC
* *
114758048 TGTATACATAAATAGTGTC
1 TGTATACGTAAATAGTGAC
114758067 -GTATACGTAAATAGTG
1 TGTATACGTAAATAGTG
114758083 CCATAAATGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 46 0.98
19 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (19 bp):
TGTATACGTAAATAGTGAC
Found at i:114760042 original size:20 final size:19
Alignment explanation
Indices: 114760019--114760057 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
114760009 TATATATATA
114760019 TATATAATTTTAATATTTTT
1 TATATAATTTTAAT-TTTTT
**
114760039 TATATTTTTTTAATTTTTT
1 TATATAATTTTAATTTTTT
114760058 ATAATTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TATATAATTTTAATTTTTT
Found at i:114760062 original size:10 final size:10
Alignment explanation
Indices: 114760021--114760064 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
114760011 TATATATATA
114760021 TATAA-TTTT
1 TATAATTTTT
*
114760030 AAT-ATTTTT
1 TATAATTTTT
114760039 TAT-ATTTTT
1 TATAATTTTT
114760048 T-TAATTTTT
1 TATAATTTTT
114760057 TATAATTT
1 TATAATTT
114760065 AAAAAATTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 2 0.07
9 22 0.73
10 6 0.20
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATAATTTTT
Found at i:114761390 original size:25 final size:24
Alignment explanation
Indices: 114761351--114761401 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
114761341 AACAAATAAT
114761351 TTAAAATTTATAAAATATTCAAAAAA
1 TTAAAATTTATAAAATA-T-AAAAAA
114761377 TTAAAA-TTATAAAATATAAAAAA
1 TTAAAATTTATAAAATATAAAAAA
114761400 TT
1 TT
114761402 CATAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 8 0.32
24 1 0.04
25 10 0.40
26 6 0.24
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
TTAAAATTTATAAAATATAAAAAA
Found at i:114761399 original size:17 final size:17
Alignment explanation
Indices: 114761379--114761417 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
114761369 TCAAAAAATT
114761379 AAAATT-ATAAAATATAA
1 AAAATTCATAAAATA-AA
114761396 AAAATTCATAAAATAAA
1 AAAATTCATAAAATAAA
114761413 AAAAT
1 AAAAT
114761418 AGTGTAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATTCATAAAATAAA
Found at i:114761534 original size:31 final size:32
Alignment explanation
Indices: 114761499--114761565 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
114761489 TTAAAAAAAT
*
114761499 AATTCAACT-TTTTTTGAAAAGTTGATA-GTCA
1 AATTCAACTCTTTTTTAAAAAGTTGA-AGGTCA
*
114761530 AATTCTACTCTTTTTTAAAAAGTTGAAGGTCA
1 AATTCAACTCTTTTTTAAAAAGTTGAAGGTCA
114761562 AATT
1 AATT
114761566 TAGTTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (32 bp):
AATTCAACTCTTTTTTAAAAAGTTGAAGGTCA
Found at i:114765469 original size:3 final size:3
Alignment explanation
Indices: 114765461--114765520 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
114765451 TAGTTGCTTT
*
114765461 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
114765509 ATA ATA ATA ATA
1 ATA ATA ATA ATA
114765521 TCTATAGCTG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:114771960 original size:29 final size:27
Alignment explanation
Indices: 114771910--114771966 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
114771900 AATATTTAAA
* *
114771910 TAAAATATATCAAAATTATAATACTAT
1 TAAAATATATAAAAATTATAATAATAT
*
114771937 TAAAATATATAAAAATAATTTAATAATAT
1 TAAAATATATAAAAAT--TATAATAATAT
114771966 T
1 T
114771967 TATTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.60
29 10 0.40
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAAATATATAAAAATTATAATAATAT
Found at i:114789878 original size:23 final size:24
Alignment explanation
Indices: 114789834--114789879 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
114789824 AAAAGTATCC
114789834 CGAACAAGCAAATGAGAATGACAAA
1 CGAACAAGCAAA-GAGAATGACAAA
*
114789859 CGAACAATCAAA-AGAATGACA
1 CGAACAAGCAAAGAGAATGACA
114789880 GTGGGATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
25 11 0.55
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (24 bp):
CGAACAAGCAAAGAGAATGACAAA
Found at i:114792096 original size:75 final size:73
Alignment explanation
Indices: 114791984--114792133 Score: 237
Period size: 75 Copynumber: 2.0 Consensus size: 73
114791974 TATCTTTCAA
* *
114791984 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGATATTTTCAATT
*
114792049 TCCGTTTTTC
64 TCCATTTTTC
*
114792059 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGATATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTTC
*
114792124 TATTTTTC
66 CATTTTTC
114792132 AA
1 AA
114792134 TTTTGCCTTA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
73 30 0.43
75 40 0.57
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTTC
CATTTTTC
Found at i:114792333 original size:75 final size:75
Alignment explanation
Indices: 114792154--114792710 Score: 736
Period size: 73 Copynumber: 7.5 Consensus size: 75
114792144 CAAATTCTGC
* * * *
114792154 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
* *
114792219 GTC--AAAAC
66 TTCAAAAAAA
* * *
114792227 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGTTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
114792292 TTCAAAAAAA
66 TTCAAAAAAA
* * * *
114792302 TCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
114792367 GTT---AAAAA
66 -TTCAAAAAAA
* *
114792375 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
*
114792440 TTAAAAAAAA
66 TTCAAAAAAA
* * * * *
114792450 TCAGCTCATATTGCGAAAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
114792515 TTCAAAAAAA
66 TTCAAAAAAA
* * * *
114792525 TCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
*
114792588 GTC--AAAAA
66 TTCAAAAAAA
* *
114792596 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACACGTTGAGGTATTTTCAATTTTTATCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGT-T
**
114792661 TTAAAAAAAAAA
65 TT-TCAAAAAAA
* *
114792673 TCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
114792711 GCTAAGGTGT
Statistics
Matches: 427, Mismatches: 45, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
71 38 0.09
72 2 0.00
73 173 0.41
74 2 0.00
75 170 0.40
76 2 0.00
77 40 0.09
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTT
TTCAAAAAAA
Found at i:114792340 original size:148 final size:148
Alignment explanation
Indices: 114792154--114792951 Score: 762
Period size: 148 Copynumber: 5.2 Consensus size: 148
114792144 CAAATTCTGC
* * *
114792154 TCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTATTT
* * * *
114792219 GTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGTTATTTTCAAT
66 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAAT
114792284 TTCTGTTTTTCAAAAAAA
131 TTCTGTTTTTCAAAAAAA
* * *
114792302 TCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTATTT
* *
114792367 GTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
66 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAAT
* *
114792432 TTCTGTCTTTAAAAAAAA
131 TTCTGTTTTTCAAAAAAA
* * * * * *
114792450 TCAGCTCATATTGCGAAAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTATTT
* * * *
114792515 TTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCA
66 GTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCA
* *
114792578 ATTTTTGTTTGTC--AAAAA
129 ATTTCTGTTTTTCAAAAAAA
* * *
114792596 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACACGTTGAGGTATTTTCAATTTTTATCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTAT-T
* * *
114792661 T-TAAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTAAGGTGTTTTC
65 TGT----CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA--C--A--CG--TT-
* ** * * *
114792725 CATTTCTGTTCTTCAATTTCTGTGTTTAAAAAAAA
117 GA--GGTATT-TTCAATTTCTGTTTTTCAAAAAAA
* * * ** *
114792760 TCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-AGACACGCTGAGGTAATTTC-AA-----T
* * *
114792825 TTTTCAAATTTTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACG
58 TTTT---A---TTTGT-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
* * * *
114792889 CTGAGGTATTTTCAAGTTCTGCTTTTCAAAAGAA
115 TTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAA
* *
114792923 TCAACTAATATTGCAAGAGGTGAGTTGAG
1 TCAACTCATATTGCGAGAGGTGAGTTGAG
114792952 TCTCGGGCCA
Statistics
Matches: 539, Mismatches: 72, Indels: 63
0.80 0.11 0.09
Matches are distributed among these distances:
146 64 0.12
147 2 0.00
148 261 0.48
150 39 0.07
154 1 0.00
156 1 0.00
158 1 0.00
159 1 0.00
161 2 0.00
162 13 0.02
163 44 0.08
164 36 0.07
165 2 0.00
166 18 0.03
167 3 0.01
169 1 0.00
171 1 0.00
172 5 0.01
173 1 0.00
175 3 0.01
176 36 0.07
177 2 0.00
178 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (148 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTATTT
GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAAT
TTCTGTTTTTCAAAAAAA
Found at i:114792872 original size:89 final size:86
Alignment explanation
Indices: 114792667--114792918 Score: 276
Period size: 89 Copynumber: 2.9 Consensus size: 86
114792657 ATCTTTAAAA
* * * * * * * *
114792667 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-AAGACGCTAAGGTGTTTTCCATTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCACACGCTGAGGTATTTTCAAATTC
**
114792731 TG-TTCTTC-AATTTCTGTGTTTAA
66 TGCTT-TTCAAATTT-T-T-TTTCC
* * *
114792754 AAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CGCACACGCTGAGGTATTTTCAAA
*
114792819 TTCTGTTTTTCAAATTTTTTTTCC
63 TTCTGCTTTTCAAATTTTTTTTCC
* *
114792843 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTCAAGTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCACACGCTGAGGTATTTTCAAATTC
114792908 TGCTTTTCAAA
66 TGCTTTTCAAA
114792919 AGAATCAACT
Statistics
Matches: 143, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
86 34 0.24
87 35 0.24
88 2 0.01
89 38 0.27
90 2 0.01
91 25 0.17
92 7 0.05
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (86 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCACACGCTGAGGTATTTTCAAATTC
TGCTTTTCAAATTTTTTTTCC
Done.