Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 383 of 770
Found at i:117882304 original size:35 final size:35
Alignment explanation
Indices: 117882264--117882347 Score: 96
Period size: 42 Copynumber: 2.2 Consensus size: 35
117882254 ACATCCAAGC
117882264 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
1 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
*
117882299 ACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACG
1 ACC-A------AGGTGCCGATGGTGCCCGAGGCTCCCGCACG
117882341 ACCAAGG
1 ACCAAGG
117882348 GCCTAGGTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
35 6 0.15
36 1 0.02
41 1 0.02
42 33 0.80
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (35 bp):
ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
Found at i:117882736 original size:24 final size:24
Alignment explanation
Indices: 117882704--117882781 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
117882694 TTTCGATATT
117882704 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
117882728 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
* *
117882752 CCGGGATAGATCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
117882776 CCGGGA
1 CCGGGA
117882782 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.15, C:0.36, G:0.41, T:0.08
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:117883269 original size:58 final size:59
Alignment explanation
Indices: 117883178--117883298 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
117883168 GGGAGGGACA
* *
117883178 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
117883236 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
117883295 GGGA
1 GGGA
117883299 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:117883360 original size:24 final size:24
Alignment explanation
Indices: 117883332--117883385 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
117883322 TTTGTGTATC
* * *
117883332 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
117883356 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
117883380 CCGGGA
1 CCGGGA
117883386 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:117894756 original size:43 final size:42
Alignment explanation
Indices: 117894709--117895409 Score: 833
Period size: 43 Copynumber: 16.5 Consensus size: 42
117894699 CCCTGCTGCT
* * * *
117894709 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
117894752 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
117894794 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCC
* **
117894837 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * *
117894880 CGAGGCTCCCGCAC-ATCCAAGCACCAAAGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
*
117894922 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
117894965 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
117895007 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
*
117895048 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
117895091 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** *
117895134 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
117895176 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
117895218 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * *
117895261 CGAAGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
*
117895303 CGAGGCTCCCGCACGACC-AGGCGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGG-GCCTAGG-TGCCGATGGTGCC
* * *
117895346 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
117895389 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
117895410 CAGCAATGTG
Statistics
Matches: 582, Mismatches: 60, Indels: 32
0.86 0.09 0.05
Matches are distributed among these distances:
41 31 0.05
42 242 0.42
43 305 0.52
44 4 0.01
ACGTcount: A:0.18, C:0.35, G:0.33, T:0.14
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:117894784 original size:85 final size:84
Alignment explanation
Indices: 117894709--117895409 Score: 856
Period size: 85 Copynumber: 8.2 Consensus size: 84
117894699 CCCTGCTGCT
* * * *
117894709 CGAGGCACCCGCACATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
117894773 CACCAAGGTGCCAATGCTGCT
64 GGCCTAGGTGCCGATGGTGCC
*
117894794 CGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACATCCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* **
117894859 GCCGAGGTTGCCGATGGTGTT
65 GCCTAGG-TGCCGATGGTGCC
* * * *
117894880 CGAGGCTCCCGCACATCCAAGCACCAAAGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
117894945 CCTAGGTTGCCGATGGTGCC
66 CCTAGG-TGCCGATGGTGCC
* *
117894965 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
117895030 CCTAGGTGCCGATGGT-CC
66 CCTAGGTGCCGATGGTGCC
* * *
117895048 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
117895112 GGCCTAGGTTGCCGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
* *
117895134 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
117895199 CCTAGGTGCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
* * * * ** * *
117895218 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGG
1 CGAGGCTCCCGCAC-ATCCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
117895282 GGCCTAGGTGCCGATGGTGGC
64 GGCCTAGGTGCCGATGGTGCC
* *
117895303 CGAGGCTCCCGCACGA-CC-AGGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCAC-ATCCAAGG-ACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * *
117895366 GGGCCTAGGTTTCCGATGGCGTC
63 GGGCCTAGG-TGCCGATGGTGCC
* * *
117895389 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACATCCAAG
117895410 CAGCAATGTG
Statistics
Matches: 548, Mismatches: 54, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
83 28 0.05
84 90 0.16
85 342 0.62
86 86 0.16
87 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.33, T:0.14
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTGCCGATGGTGCC
Found at i:117894901 original size:128 final size:129
Alignment explanation
Indices: 117894709--117895425 Score: 958
Period size: 128 Copynumber: 5.6 Consensus size: 129
117894699 CCCTGCTGCT
* * *
117894709 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG
* * * * *
117894773 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGC
65 CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGCGCCTAGGTTGCCGATGGTGC
117894836 C
129 C
* *
117894837 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* *
117894902 ACCAAAGTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGGCCTAGGTTGCCGATGGTGCC
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCGCCTAGGTTGCCGATGGTGCC
*
117894965 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
** * *
117895027 GGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGG-GCCTAGGTTGCCGATGGTGC
64 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCGCCTAGGTTGCCGATGGTGC
117895090 C
129 C
* *
117895091 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
117895156 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGG-TGCCGATGGTGCC
66 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCGCCTAGGTTGCCGATGGTGCC
* * * * *
117895218 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCT-CC-TACATGACCAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAT--CCAA
** * * *
117895281 GGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACC-AGGCGCCTAGGTTGCCGATGGTGG
64 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCGCCTAGGTTGCCGATGGTGC
117895345 C
129 C
* * * * *
117895346 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGCGTCCAAGGCTCCAGCACGTCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
* *
117895411 AGCAATGTGCCGATG
66 ACCAAGGTGCCGATG
117895426 CTCCCGTACC
Statistics
Matches: 521, Mismatches: 52, Indels: 32
0.86 0.09 0.05
Matches are distributed among these distances:
125 4 0.01
126 72 0.14
127 208 0.40
128 231 0.44
129 3 0.01
130 3 0.01
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.14
Consensus pattern (129 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCGCCTAGGTTGCCGATGGTGCC
Found at i:117895196 original size:35 final size:35
Alignment explanation
Indices: 117895156--117895239 Score: 96
Period size: 42 Copynumber: 2.2 Consensus size: 35
117895146 ACATCCAAGC
117895156 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
1 ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
*
117895191 ACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACG
1 ACC-A------AGGTGCCGATGGTGCCCGAGGCTCCCGCACG
117895233 ACCAAGG
1 ACCAAGG
117895240 GCCTAGGTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
35 6 0.15
36 1 0.02
41 1 0.02
42 33 0.80
ACGTcount: A:0.19, C:0.35, G:0.35, T:0.12
Consensus pattern (35 bp):
ACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACG
Found at i:117895628 original size:24 final size:24
Alignment explanation
Indices: 117895596--117895673 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
117895586 TTTCGATATT
117895596 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
117895620 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
* *
117895644 CCGGGATAGATCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
117895668 CCGGGA
1 CCGGGA
117895674 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.15, C:0.36, G:0.41, T:0.08
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:117896161 original size:58 final size:59
Alignment explanation
Indices: 117896070--117896190 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
117896060 GGGAGGGACA
* *
117896070 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
117896128 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
117896187 GGGA
1 GGGA
117896191 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:117896252 original size:24 final size:24
Alignment explanation
Indices: 117896224--117896277 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
117896214 TTTGTGTATC
* * *
117896224 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
117896248 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
117896272 CCGGGA
1 CCGGGA
117896278 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:117904211 original size:42 final size:42
Alignment explanation
Indices: 117904114--117904665 Score: 555
Period size: 42 Copynumber: 13.2 Consensus size: 42
117904104 CCCTGCTGCT
* *
117904114 CGAGGCACCCGCACATCCAA-CGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACATCCAAGCG-CCTAGG-TGCCGATGGTGCC
* * * * *
117904157 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
* *
117904199 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
* * **
117904241 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCAC-ATCCAAGCGCCTAGG-TGCCGATGGTGCC
* * *
117904284 CGAGGCTCCCGCACATCCAAGCACCAAAGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCGCC-TAGGTGCCGATGGTGCC
* *
117904327 CGAGGCTCCCGC-CGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCTAGG-TGCCGATGGTGCC
* *
117904369 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
*
117904411 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGT--C
1 CGAGGCTCCCGCAC-ATCCAAGCGCCTAGGTGCCGATGGTGCC
* *
117904451 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCTAGGTGCCGATGGTGCC
* *
117904493 CGAGGCTCCCGCACA-CCAGGGGCCTAGGT--CGATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
* *
117904532 CGAGGCTTCCGCATCCACACCAAG-G--T-GGTGCCGATGGTGCC
1 CGAGGCTCCCGCA--CA-TCCAAGCGCCTAGGTGCCGATGGTGCC
* *
117904573 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGCGCCGATGGTG-C
1 CGAGGCTCCCGCAC-ATCCAAGCGCCTAGGTGCCGATGGTGCC
* * *
117904614 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCAC-ATCCAAGCGCCTAGG-TGCCGATGGTGCC
117904657 CGAGGCTCC
1 CGAGGCTCC
117904666 AGCATGTCCA
Statistics
Matches: 446, Mismatches: 38, Indels: 50
0.84 0.07 0.09
Matches are distributed among these distances:
38 5 0.01
39 27 0.06
40 41 0.09
41 70 0.16
42 192 0.43
43 108 0.24
44 3 0.01
ACGTcount: A:0.18, C:0.35, G:0.33, T:0.14
Consensus pattern (42 bp):
CGAGGCTCCCGCACATCCAAGCGCCTAGGTGCCGATGGTGCC
Found at i:117904692 original size:84 final size:84
Alignment explanation
Indices: 117904114--117904665 Score: 646
Period size: 85 Copynumber: 6.6 Consensus size: 84
117904104 CCCTGCTGCT
* * * *
117904114 CGAGGCACCCGCACATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACATCCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
117904178 CACCAAGGTGCCAATGCTGCT
64 GGCCTAGGTGCCGATGGTGCC
** *
117904199 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
117904264 CCGAGGTTGCCGATGGTGTT
66 CCTAGG-TGCCGATGGTGCC
** * * *
117904284 CGAGGCTCCCGCACATCCAAGCACCAAAGTTGCCGATGGTGCCCGAGGCTCCCGC-CGACCAGGG
1 CGAGGCTCCCGCACATCCAAGGGCC-TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
117904348 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCC
*
117904369 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
117904434 CCTAGGTGCCGATGGT--C
66 CCTAGGTGCCGATGGTGCC
* *
117904451 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAGGG
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
117904514 GCCTAGGT--CGATGGTGCC
65 GCCTAGGTGCCGATGGTGCC
* *
117904532 CGAGGCTTCCGCATCCACACCAA-GG--T-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCA--CA-TCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
117904593 GGGCCTAGGCGCCGATGGTG-C
63 GGGCCTAGGTGCCGATGGTGCC
* *
117904614 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCC
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCC
117904666 AGCATGTCCA
Statistics
Matches: 414, Mismatches: 33, Indels: 41
0.85 0.07 0.08
Matches are distributed among these distances:
79 11 0.03
80 32 0.08
81 41 0.10
82 67 0.16
83 14 0.03
84 97 0.23
85 124 0.30
86 28 0.07
ACGTcount: A:0.18, C:0.35, G:0.33, T:0.14
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTGCCGATGGTGCC
Found at i:117905721 original size:26 final size:26
Alignment explanation
Indices: 117905623--117905724 Score: 114
Period size: 26 Copynumber: 3.9 Consensus size: 26
117905613 ACCAGTCGAC
* * * *
117905623 ATTCATGTGTCTAAAACAAGGATAGG
1 ATTCAGGTGTCTGAAACAGGGACAGG
* * *
117905649 TTTCAGGTGTCCGAAACAGAGACAGG
1 ATTCAGGTGTCTGAAACAGGGACAGG
*
117905675 TTTCAGGTGTCTGAAACAGGGACAGG
1 ATTCAGGTGTCTGAAACAGGGACAGG
* *
117905701 ATTCAGATGTCTGAAATAGGGACA
1 ATTCAGGTGTCTGAAACAGGGACA
117905725 CTTTTTCAGC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (26 bp):
ATTCAGGTGTCTGAAACAGGGACAGG
Found at i:117910307 original size:125 final size:128
Alignment explanation
Indices: 117910118--117911157 Score: 1001
Period size: 125 Copynumber: 8.3 Consensus size: 128
117910108 CATCCAACGT
* * ** * * * *
117910118 CCTAGGTTGCCGATAGTGTCCGAGGCTCCCGCA--ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
** * *
117910180 GAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGG
65 GAGGCTCCCGCACGA-CCAAGGGCCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGG
117910243 G
128 G
* * **
117910244 CCAAGG-TGCCGATGGTGCCCGAGGCT-CCGCATGACCAAGGGCC-AGGTTGCCGATGGTGTTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** *** * * * * *
117910306 AGGCTCTCGCAC-ATCCAAGCACCATCATACCG-TGGTGC-CTGAGGTTCTCGTACGATCAA-GG
66 AGGCTCCCGCACGA-CCAAGGGCCAAGGTGCCGATGGTGCTC-GAGGCTCCCGCACGACCAAGGG
* * * *
117910367 CCTAGGTTACCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** **
117910431 AGGCTCCCGCACGACCAGGGGCTTAGGTTATCGATGGTG-TCCGAGGCTCCCGCAC-ATCCAAGG
66 AGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACGA-CCAAGG
117910494 G
128 G
* *
117910495 CCTAGG-TGCCGATGGTGGCC-AGGCTCCCGCACGTCCAAGGGCCTAGG-TGCCGATGGT-CCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
117910556 AGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
* ** * *
117910620 CCTAGGTTGCCGATTGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGGTG-CC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
117910682 GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCTCAAGGCTCTCGCACGACCAAGGG
65 GAGGCTCCCGCACGACCAAGGGCCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
* * ** *
117910746 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACC-AGGGTCCTAGGTAT--CGATGGTGGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT-TGCCGATGGTGCC
* * * * *
117910808 CGATGCTCCTGCACGACCAAGGGCCTAGGTTACCGATGGTGGC-CGAGGCTCCCGCACGACCAGG
64 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGT-GCTCGAGGCTCCCGCACGACCAAG
117910872 GG
127 GG
* *
117910874 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
117910938 AGGCTCTCGCACGACCAAGGGCCAAGGTTCCGATGGTGC-CGAGGCTCTCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
** * **
117911000 CCTAGGTTGCCGATGGT-ATCGAGGCTCCAGTGCGACC-AGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*** * *
117911063 AGGCTCCCGCAC-ATCCAACCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGA-CCAAGGGCCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
** * *
117911126 GTTAGG-TACCGATGGTGCTCGAGGCTCCCGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
117911158 TGACAAACAT
Statistics
Matches: 767, Mismatches: 112, Indels: 70
0.81 0.12 0.07
Matches are distributed among these distances:
123 8 0.01
124 60 0.08
125 241 0.31
126 201 0.26
127 137 0.18
128 115 0.15
129 5 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (128 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGGCCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
Found at i:117910467 original size:85 final size:86
Alignment explanation
Indices: 117910118--117911157 Score: 1005
Period size: 83 Copynumber: 12.4 Consensus size: 86
117910108 CATCCAACGT
* * ** * * * *
117910118 CCTAGGTTGCCGATAGTGTCCGAGGCTCCCGCA--ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* **
117910180 GAGGCTCCCGCAC-ATCCAAGCA
65 GAGGCTCCCGCACGA-CCAGGGG
* * * * *
117910202 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGGCCAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
117910264 GAGGCT-CCGCATGACCAAGGG
65 GAGGCTCCCGCACGACCAGGGG
** * ** *** * *
117910285 CC-AGGTTGCCGATGGTGTTCGAGGCTCTCGCAC-ATCCAAGCACC-ATCATACCG-TGGTGCCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * *
117910346 GAGGTTCTCGTACGATCA-AGG
65 GAGGCTCCCGCACGACCAGGGG
* * * *
117910367 CCTAGGTTACCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
117910431 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* ** * *
117910452 CTTAGGTTATCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
117910515 -AGGCTCCCGCACGTCCAAGGG
65 GAGGCTCCCGCACGACCAGGGG
* *
117910536 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
117910599 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* ** * *
117910620 CCTAGGTTGCCGATTGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TACCGATGGTG-CC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
*
117910682 GAGGCTCCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACCAGGGG
* * * *
117910704 CCTAGG-TGCCGATGGTGCTCAAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** *
117910768 AAGCTCCTACACGACCAGGGT
66 AGGCTCCCGCACGACCAGGGG
* * * * *
117910789 CCTAGGTAT--CGATGGTGGCCGATGCTCCTGCACGACCAAGGGCCTAGGTTACCGATGGTGGCC
1 CCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
117910852 GAGGCTCCCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
* *
117910874 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
117910938 AGGCTCTCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAGGGG
* * **
117910959 CCAAGGTT-CCGATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* **
117911021 AGGCTCCAGTGCGACCA-GGG
66 AGGCTCCCGCACGACCAGGGG
*** * *
117911041 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAACCACCAAGG-TGCCGGTGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
117911104 GAGGCTCCCGCACGACCAAGGGG
65 GAGGCTCCCGCACGACC-AGGGG
* * *
117911127 -TTAGG-TACCGATGGTGCTCGAGGCTCCCGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
117911158 TGACAAACAT
Statistics
Matches: 797, Mismatches: 127, Indels: 64
0.81 0.13 0.06
Matches are distributed among these distances:
82 59 0.07
83 229 0.29
84 228 0.29
85 206 0.26
86 74 0.09
87 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAGGGG
Found at i:117910475 original size:43 final size:43
Alignment explanation
Indices: 117910118--117911157 Score: 1032
Period size: 42 Copynumber: 24.8 Consensus size: 43
117910108 CATCCAACGT
* * **
117910118 CCTAGGTTGCCGATAGTGTCCGAGGCTCCCGCA--ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * **
117910160 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
117910202 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
117910244 CCAAGG-TGCCGATGGTGCCCGAGGCT-CCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * **
117910285 CC-AGGTTGCCGATGGTGTTCGAGGCTCTCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*** * * * * * *
117910327 CC-ATCATACCG-TGGTGCCTGAGGTTCTCGTACGATCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
117910367 CCTAGGTTACCGATGGTGCCCGAGGTTCTCGCACGATCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
117910409 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
117910452 CTTAGGTTATCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
117910495 CCTAGG-TGCCGATGGTGGCC-AGGCTCCCGCACGTCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
117910536 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
117910577 CCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
117910620 CCTAGGTTGCCGATTGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
117910663 CCAAGG-TACCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
117910704 CCTAGG-TGCCGATGGTGCTCAAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
117910746 CCTAGGTTGCCGATGGTGGCCGAAGCTCCTACACGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
117910788 TCCTAGGTAT--CGATGGTGGCCGATGCTCCTGCACGACCAAGGG
1 -CCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
117910831 CCTAGGTTACCGATGGTGGCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
117910874 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
117910917 CCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
117910959 CCAAGGTT-CCGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * **
117911000 CCTAGGTTGCCGATGGT-ATCGAGGCTCCAGTGCGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
***
117911041 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAACCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
117911084 CCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
117911126 GTTAGG-TACCGATGGTGCTCGAGGCTCCCGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
117911158 TGACAAACAT
Statistics
Matches: 856, Mismatches: 113, Indels: 58
0.83 0.11 0.06
Matches are distributed among these distances:
40 7 0.01
41 228 0.27
42 391 0.46
43 229 0.27
44 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:117911281 original size:24 final size:24
Alignment explanation
Indices: 117911229--117911296 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
117911219 TCGATATTCT
* * **
117911229 GGGATGGCTCGCCGGATCACTGCC
1 GGGATGGCTCGCTGGAGCACCACC
*
117911253 AGGATGGCTCGCTGGAGCACCACC
1 GGGATGGCTCGCTGGAGCACCACC
* *
117911277 GGGATGGATCACTGGAGCAC
1 GGGATGGCTCGCTGGAGCAC
117911297 TGTCGGGAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.19, C:0.29, G:0.37, T:0.15
Consensus pattern (24 bp):
GGGATGGCTCGCTGGAGCACCACC
Found at i:117916594 original size:58 final size:59
Alignment explanation
Indices: 117916503--117916623 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
117916493 AGGAGGGACA
* *
117916503 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
117916561 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
117916620 GGGA
1 GGGA
117916624 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:117928310 original size:29 final size:29
Alignment explanation
Indices: 117928277--117928408 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
117928267 GTGACGAGAT
117928277 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
117928306 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
117928335 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
117928364 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
117928393 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
117928409 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:117938069 original size:20 final size:19
Alignment explanation
Indices: 117938041--117938079 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
117938031 TGTGACCCCT
117938041 GTTTAGTGAAAATTTTCTAA
1 GTTTAGTG-AAATTTTCTAA
*
117938061 GTTTTGTGAAATTTTCTAA
1 GTTTAGTGAAATTTTCTAA
117938080 AATTCTCGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (19 bp):
GTTTAGTGAAATTTTCTAA
Found at i:117939895 original size:42 final size:43
Alignment explanation
Indices: 117939767--117939895 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
117939757 TTATGTTTTG
* * * * *
117939767 GAACCACATAGGCT-GAAGACACGGGCATCTGTCCAAGCCATGT
1 GAACCACACAGG-TAGAGGACATGGGCATTTGTCCAAGCCGTGT
** * * *
117939810 GAACCACATGGGTAGAGGACATGGGCATTTGTCTAGGCTGTGT
1 GAACCACACAGGTAGAGGACATGGGCATTTGTCCAAGCCGTGT
*
117939853 GAACCACACAGGTA-AGGACATGGGCGTTTGTCCAAGCCGTGT
1 GAACCACACAGGTAGAGGACATGGGCATTTGTCCAAGCCGTGT
117939895 G
1 G
117939896 GCATAATAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 26 0.37
43 45 0.63
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.20
Consensus pattern (43 bp):
GAACCACACAGGTAGAGGACATGGGCATTTGTCCAAGCCGTGT
Found at i:117943709 original size:50 final size:50
Alignment explanation
Indices: 117943568--117943709 Score: 169
Period size: 50 Copynumber: 2.8 Consensus size: 50
117943558 TTAACTTCGA
* * *
117943568 TCACGTGTGTAGTACGAAGTGCAGGCTACTACGTGTATCAGATGGATAAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAG
* * * * *
117943618 TCACATGTATAGTACTAAGTGCAGGCTACTACATGTTCCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAG
* * *
117943668 TCGCATGTGTAGTACTACA-TGCAGGCTACTATGCGTACCAGA
1 TCACATGTGTAGTACTA-AGTGCAGGCTACTACGTGTACCAGA
117943710 GAGCTTCGGT
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 76 0.99
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAG
Found at i:117943930 original size:16 final size:16
Alignment explanation
Indices: 117943909--117943940 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
117943899 AGAATGGAGT
117943909 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
117943925 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
117943941 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:117946119 original size:15 final size:15
Alignment explanation
Indices: 117946099--117946142 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
117946089 TATGATATTG
117946099 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
117946113 TTATCTTGGATTTCTC
1 -TATCTTGGATTTCTC
*
117946129 TATCTTGGACTTCT
1 TATCTTGGATTTCT
117946143 TAATCCTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.52
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:117946157 original size:30 final size:30
Alignment explanation
Indices: 117946099--117946157 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
117946089 TATGATATTG
* *
117946099 TATCTTGGATTTCCTTATCTTGGATTTCTC
1 TATCTTGGACTTCCTTATCCTGGATTTCTC
*
117946129 TATCTTGGACTT-CTTAATCCTGGTTTTCT
1 TATCTTGGACTTCCTT-ATCCTGGATTTCT
117946158 TGTTATCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.53
Consensus pattern (30 bp):
TATCTTGGACTTCCTTATCCTGGATTTCTC
Found at i:117948755 original size:19 final size:18
Alignment explanation
Indices: 117948727--117948766 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
117948717 TTGTAAGTAT
117948727 ATATATGTGAATAATTTG
1 ATATATGTGAATAATTTG
* *
117948745 ATATCATGTGATTATTTTG
1 ATAT-ATGTGAATAATTTG
117948764 ATA
1 ATA
117948767 ATATAACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (18 bp):
ATATATGTGAATAATTTG
Found at i:117949201 original size:52 final size:51
Alignment explanation
Indices: 117949127--117949360 Score: 237
Period size: 52 Copynumber: 4.6 Consensus size: 51
117949117 TGAGAACACA
* *
117949127 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAA-ACAGTTTTAGGTCACG
* * *
117949179 TGTGTAGTACTAAGTGCAGGCTACTA--TG--T-ACCAGATTGTTAGGTCTCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAACAG-TT-TTAGGTCACG
** ** * * **
117949227 TGTGTAGTACTAAGTGCAGGCTACTATGCATTCCCAATAG-TTTCGACCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTT-TAAACAGTTTTAGGTCACG
*
117949278 TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAATTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAA-ACAGTTTTAGGTCACG
* *
117949330 TGTGTGGTACTAAGTGCAGGCTACTACGTGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGT
117949361 ACTGGATTGA
Statistics
Matches: 146, Mismatches: 26, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
46 3 0.02
47 3 0.02
48 34 0.23
50 3 0.02
51 37 0.25
52 63 0.43
54 3 0.02
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAACAGTTTTAGGTCACG
Found at i:117949384 original size:50 final size:50
Alignment explanation
Indices: 117949123--117949556 Score: 312
Period size: 50 Copynumber: 8.6 Consensus size: 50
117949113 ATTGTGAGAA
* * * *
117949123 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTAATAGGT
** **
117949175 CATGTGTGTAGTACTAAGTGCAGGCTACTA--TGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGT
* * * * * **
117949223 CTCATGTGTAGTACTAAGTGCAGGCTACTATGCAT-TCCCA-A-TAGTTTCGAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTA--CGTGTACCAGATTA--ATAGGT
* * * *
117949274 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACA-ATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTAATAGGT
* * ** *
117949326 CACGTGTGTGGTACTAAGTGCAGGCTACTACGTGTACTGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGT
* * * * * * *
117949376 CGCATGTGTAGTACTAAGTGCAGGCTAATATGCGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAA--TAGGT
* ** *
117949427 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGT
* * *
117949477 CACGTATGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATTAATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGT
**
117949527 CGTATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
117949557 TGCATACCAG
Statistics
Matches: 302, Mismatches: 61, Indels: 40
0.75 0.15 0.10
Matches are distributed among these distances:
46 3 0.01
47 3 0.01
48 34 0.11
49 9 0.03
50 111 0.37
51 72 0.24
52 66 0.22
54 3 0.01
55 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGT
Found at i:117949440 original size:153 final size:153
Alignment explanation
Indices: 117949123--117949564 Score: 597
Period size: 151 Copynumber: 2.9 Consensus size: 153
117949113 ATTGTGAGAA
* * *
117949123 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCATGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAATTTTAGGTCACGTGTGTAGTA
* *
117949188 CTAAGTGCAGGCTACTA--TGTACCAGATTGTTAGGTCTCATGTGTAGTACTAAGTGCAGGCTAC
66 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
* **
117949251 TATGCATTCCCAATAGTTTCGAC
131 TATGCATACCCAATAACTTCGAC
* *
117949274 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAATTTTAGGTCACGTGTGTGGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAATTTTAGGTCACGTGTGTAGTA
** *
117949339 CTAAGTGCAGGCTACTACGTGTACTGGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAA
66 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
* ** *
117949404 TATGCGTACCCGTTAACTTCGAT
131 TATGCATACCCAATAACTTCGAC
* * * ** * *
117949427 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG---ATGGATAAGTCACGTATGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAAT-TTTAGGTCACGTGTGTAGT
* * *
117949489 ACTAAGTGCAGGCTATTACGTGTACCAGATTAATAGGTCGTATGTGTAGTACTAAGTGCAGGCTA
65 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
117949554 CTATGCATACC
130 CTATGCATACC
117949565 AGAGAGCTTC
Statistics
Matches: 255, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
150 2 0.01
151 160 0.63
153 93 0.36
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (153 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTTAAGACAATTTTAGGTCACGTGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
TATGCATACCCAATAACTTCGAC
Found at i:117949454 original size:101 final size:100
Alignment explanation
Indices: 117949325--117949556 Score: 279
Period size: 101 Copynumber: 2.3 Consensus size: 100
117949315 CAATTTTAGG
* * * * * * *
117949325 TCACGTGTGTGGTACTAAGTGCAGGCTACTACGTGTA-CTGGATTGATAGGTCGCATGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATGGATAAGTCACATATGTAGTA
* * *
117949389 CTAAGTGCAGGCTAATATGCGTACCCG-TTAACTTCGA
65 CTAAGTGCAGGCTAATACGCGTACCAGATTAA--TAGA
*
117949426 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTATGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACATATGTAGTAC
* * *
117949491 TAAGTGCAGGCTATTACGTGTACCAGATTAATAGG
66 TAAGTGCAGGCTAATACGCGTACCAGATTAATAGA
**
117949526 TCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
117949557 TGCATACCAG
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
100 31 0.27
101 77 0.68
102 5 0.04
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACATATGTAGTAC
TAAGTGCAGGCTAATACGCGTACCAGATTAATAGA
Found at i:117950825 original size:17 final size:17
Alignment explanation
Indices: 117950781--117950838 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
117950771 TAATTGCTTT
*
117950781 AATATTAAATTAATA-A
1 AATATTAAATTAAGATA
*
117950797 AATACT--ATTAAGATA
1 AATATTAAATTAAGATA
* *
117950812 AATATTAAATTAAGTTT
1 AATATTAAATTAAGATA
117950829 AATATTAAAT
1 AATATTAAAT
117950839 CTATTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
14 6 0.18
15 6 0.18
16 5 0.15
17 17 0.50
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAGATA
Found at i:117962139 original size:21 final size:23
Alignment explanation
Indices: 117962115--117962162 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
117962105 AGTTTGATTT
*
117962115 TTAAATTAATAA-AG-ATAAAAC
1 TTAAAATAATAATAGAATAAAAC
*
117962136 TTAAAATAATAATTGAATAAAAC
1 TTAAAATAATAATAGAATAAAAC
117962159 TTAA
1 TTAA
117962163 CAGATCCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 11 0.48
22 1 0.04
23 11 0.48
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
TTAAAATAATAATAGAATAAAAC
Found at i:117962672 original size:23 final size:24
Alignment explanation
Indices: 117962637--117962687 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
117962627 GGCTTCAATT
*
117962637 TTTTTTTATTTCATTTAAATGATA
1 TTTTTTTATTTCACTTAAATGATA
*
117962661 TTTTTTTA-TTCACTTAAATTATA
1 TTTTTTTATTTCACTTAAATGATA
117962684 TTTT
1 TTTT
117962688 GATATAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTTTTTATTTCACTTAAATGATA
Found at i:117965054 original size:18 final size:19
Alignment explanation
Indices: 117965003--117965055 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
117964993 GGCAAAAATT
117965003 CAAAGTATCGATACCATTTG
1 CAAAGTATCGATA-CATTTG
*
117965023 CACAA-TACCGATACATTT-
1 CA-AAGTATCGATACATTTG
*
117965041 TAAAGTATCGATACA
1 CAAAGTATCGATACA
117965056 GTTATGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 2 0.07
18 10 0.36
19 5 0.18
20 9 0.32
21 2 0.07
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (19 bp):
CAAAGTATCGATACATTTG
Found at i:117967120 original size:2 final size:2
Alignment explanation
Indices: 117967113--117967138 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
117967103 TTGGTATGAC
117967113 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
117967139 GCACGTGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:117967123 original size:48 final size:48
Alignment explanation
Indices: 117967068--117967174 Score: 214
Period size: 48 Copynumber: 2.2 Consensus size: 48
117967058 GATTCGGCTC
117967068 TATATATATATATATATATATATGCACGTGATGTATTGGTATGACATA
1 TATATATATATATATATATATATGCACGTGATGTATTGGTATGACATA
117967116 TATATATATATATATATATATATGCACGTGATGTATTGGTATGACATA
1 TATATATATATATATATATATATGCACGTGATGTATTGGTATGACATA
117967164 TATATATATAT
1 TATATATATAT
117967175 CATCTCAAGG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (48 bp):
TATATATATATATATATATATATGCACGTGATGTATTGGTATGACATA
Found at i:117967929 original size:40 final size:40
Alignment explanation
Indices: 117967846--117967991 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
117967836 TCGAATGATG
* * *
117967846 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
117967886 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
117967926 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
117967967 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
117967992 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:117967998 original size:80 final size:80
Alignment explanation
Indices: 117967846--117968024 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 80
117967836 TCGAATGATG
* * *
117967846 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTATGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
117967911 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
117967926 TCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTATGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
117967989 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
117968006 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
117968025 TACGTGATTC
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
79 17 0.20
80 61 0.73
81 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTATGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:117983915 original size:28 final size:27
Alignment explanation
Indices: 117983852--117983921 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
117983842 ATAGTGAGTC
*
117983852 CGCACGCTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
117983879 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
117983907 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
117983922 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:117988519 original size:40 final size:40
Alignment explanation
Indices: 117988474--117988603 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
117988464 CGGAATACAA
117988474 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
117988514 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
117988554 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
117988594 CCGGATATAA
1 CCGGATATAA
117988604 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:117988618 original size:40 final size:40
Alignment explanation
Indices: 117988474--117988637 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
117988464 CGGAATACAA
* **
117988474 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
117988514 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
117988554 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
117988594 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
117988634 CCGG
1 CCGG
117988638 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:118003183 original size:79 final size:81
Alignment explanation
Indices: 118002999--118003223 Score: 291
Period size: 79 Copynumber: 2.8 Consensus size: 81
118002989 GCTACTCGTT
* * *
118002999 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACATAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCG
*
118003063 G-TTATAGTAACTCGCA
65 GAATATAGTAACTCGCA
* *
118003079 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTTGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCGG
118003143 AAT-TAGTAACTCGCA
66 AATATAGTAACTCGCA
* * * *
118003158 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACCAATGCCTTCGGGACTTAGCCC
118003221 GGA
64 GGA
118003224 CATCATTCGA
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 3 0.02
79 62 0.48
80 62 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCGG
AATATAGTAACTCGCA
Found at i:118003188 original size:119 final size:120
Alignment explanation
Indices: 118003001--118003223 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
118002991 TACTCGTTCA
* * *
118003001 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACATAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGAT
*
118003066 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTTGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTGACTTGCACC
* * *
118003121 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAGCCCGG
* *
118003183 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
118003224 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTGACTTGCACC
Found at i:118003223 original size:40 final size:40
Alignment explanation
Indices: 118002999--118003223 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
118002989 GCTACTCGTT
* *
118002999 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * *
118003039 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * *
118003079 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* *
118003119 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTGCA
* *
118003158 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCA
118003199 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
118003224 CATCATTCGA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 119 0.73
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
Found at i:118005745 original size:24 final size:24
Alignment explanation
Indices: 118005713--118005767 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
118005703 ACACCTTCAT
**
118005713 ATACATATACACATTAACACATAC
1 ATACATATACACAGAAACACATAC
* *
118005737 ATACTTATACACAGAAACACATAT
1 ATACATATACACAGAAACACATAC
118005761 ATACATA
1 ATACATA
118005768 CCTTCCGCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.25
Consensus pattern (24 bp):
ATACATATACACAGAAACACATAC
Found at i:118016078 original size:29 final size:28
Alignment explanation
Indices: 118016044--118016146 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
118016034 TACTCAATCA
*
118016044 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
118016073 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
118016102 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
118016131 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
118016147 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:118023090 original size:29 final size:28
Alignment explanation
Indices: 118023058--118023131 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
118023048 GATTCAAGCC
*
118023058 CGCACACATAGTGCCATACAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* * * *
118023087 CGCACACTTAGTTCCGTACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
118023116 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
118023132 ATCTCGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
28 1 0.03
29 35 0.97
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:118044962 original size:40 final size:40
Alignment explanation
Indices: 118044765--118044981 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
118044755 CGGATGATAA
* *
118044765 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
118044805 CTGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
118044844 CCAGCCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
118044884 CCGGCCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
118044924 CTGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
118044964 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
118044982 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 47 0.31
40 107 0.69
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:118048951 original size:27 final size:27
Alignment explanation
Indices: 118048900--118048989 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
118048890 GTGACAGAGT
118048900 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* * *
118048929 CACCAGAATAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
118048956 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
118048984 CACCAG
1 CACCAG
118048990 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:118049142 original size:28 final size:28
Alignment explanation
Indices: 118049095--118049187 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
118049085 AAATTAACCC
* *
118049095 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
118049123 TAGGCGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
118049151 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
118049179 TAGGGGTAT
1 TAGGGGTAT
118049188 TCTAGCACAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:118050581 original size:41 final size:41
Alignment explanation
Indices: 118050536--118050653 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
118050526 TGAAAGATAA
118050536 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
118050577 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
118050607 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
118050648 ATGTAG
1 ATGTAG
118050654 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:118050592 original size:71 final size:71
Alignment explanation
Indices: 118050504--118050667 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
118050494 GAGATGTATC
118050504 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
118050569 AGGACA
66 AGGACA
118050575 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
118050640 AGGACA
66 AGGACA
118050646 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
118050668 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:118058117 original size:41 final size:41
Alignment explanation
Indices: 118058072--118058189 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
118058062 TGAAAGATAA
118058072 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
118058113 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
118058143 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
118058184 ATGTAG
1 ATGTAG
118058190 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:118058128 original size:71 final size:71
Alignment explanation
Indices: 118058040--118058203 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
118058030 GAGATGTATC
118058040 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
118058105 AGGACA
66 AGGACA
118058111 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
118058176 AGGACA
66 AGGACA
118058182 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
118058204 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:118059713 original size:8 final size:8
Alignment explanation
Indices: 118059697--118059728 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
118059687 CCCCAAATAC
118059697 CGGCTTTT
1 CGGCTTTT
*
118059705 CGGCATTT
1 CGGCTTTT
118059713 CGGCTTTT
1 CGGCTTTT
118059721 CGGCTTTT
1 CGGCTTTT
118059729 GCAGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:118062605 original size:46 final size:45
Alignment explanation
Indices: 118062555--118062727 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
118062545 TTGAGCATTC
118062555 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCA
*** * * *
118062601 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCA
* *
118062648 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCA
* * *
118062694 GAGCTCGTTGAGTTGAGGCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118062728 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 62 0.60
47 32 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCA
Found at i:118062716 original size:93 final size:93
Alignment explanation
Indices: 118062549--118062720 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
118062539 GGATGGTTGA
* * *
118062549 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCAGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCAGAACTCGTTGAGT
*
118062614 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGGCCGAGTTCGAGAGATGTAACTAG
* *
118062642 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCAGAACTCGTTGAGT
118062707 TGAGGCCGAGTTCG
66 TGAGGCCGAGTTCG
118062721 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCAGAACTCGTTGAGT
TGAGGCCGAGTTCGAGAGATGTAACTAG
Found at i:118073500 original size:46 final size:46
Alignment explanation
Indices: 118073450--118073625 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
118073440 TGGTTGAGCA
118073450 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
118073496 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
118073541 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
118073589 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118073626 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:118073606 original size:93 final size:93
Alignment explanation
Indices: 118073447--118073618 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
118073437 GGATGGTTGA
* *
118073447 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
118073512 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
118073540 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
118073605 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
118073619 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:118078103 original size:32 final size:32
Alignment explanation
Indices: 118078062--118078125 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
118078052 GTGTATATGT
118078062 TTGCACATGATGTTTTGGTTATGAAGTAAGTG
1 TTGCACATGATGTTTTGGTTATGAAGTAAGTG
118078094 TTGCACATGATGTTTTGGTTATGAAGTAAGTG
1 TTGCACATGATGTTTTGGTTATGAAGTAAGTG
118078126 ATAAATATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.06, G:0.28, T:0.41
Consensus pattern (32 bp):
TTGCACATGATGTTTTGGTTATGAAGTAAGTG
Found at i:118078893 original size:39 final size:39
Alignment explanation
Indices: 118078839--118078991 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
118078829 GAATGTTCGA
* *
118078839 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
118078878 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
118078917 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
118078956 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
118078992 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:118079007 original size:40 final size:39
Alignment explanation
Indices: 118078840--118079021 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
118078830 AATGTTCGAG
* * *
118078840 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
118078879 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
118078918 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
118078957 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
118078997 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
118079022 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:118081958 original size:39 final size:39
Alignment explanation
Indices: 118081913--118082149 Score: 366
Period size: 39 Copynumber: 6.1 Consensus size: 39
118081903 ATGCAAGACA
118081913 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
118081952 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
118081991 CTGGAAATATATCTGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
118082030 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
118082069 CTGGAAATGTATGCGGGCCAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * * *
118082108 CTGGAAATGTATTCGGGTTAAATTCCCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
118082147 CTG
1 CTG
118082150 ATAATATAAT
Statistics
Matches: 180, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 180 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:118091103 original size:40 final size:40
Alignment explanation
Indices: 118091048--118091211 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
118091038 TGAATGATAC
* * * *
118091048 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
118091088 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
118091128 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
118091168 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
118091208 CCGG
1 CCGG
118091212 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:118099237 original size:40 final size:40
Alignment explanation
Indices: 118099148--118099307 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 40
118099138 TGAATGATAC
* * * *
118099148 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAT-TAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATAT
*
118099186 --GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTTGTTATAT
* *** *
118099224 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATAT
* * *
118099264 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATAT
118099304 CCGG
1 CCGG
118099308 TTAAATCCCG
Statistics
Matches: 98, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
35 2 0.02
36 22 0.22
37 3 0.03
38 3 0.03
40 65 0.66
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATAT
Found at i:118121090 original size:28 final size:29
Alignment explanation
Indices: 118121023--118121123 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
118121013 ATAGTGAATC
*
118121023 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
118121052 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
118121080 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
118121110 CGCACACTTAGTGC
1 CGCACACTTAGTGC
118121124 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:118128238 original size:28 final size:28
Alignment explanation
Indices: 118128206--118128261 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
118128196 TCGTCAGAAT
*
118128206 TATGGAAAGCCCACCAAAGACTGTCTCA
1 TATGGAAAGCCCACCAAAGACTATCTCA
* **
118128234 TATGGAAAGTCTGCCAAAGACTATCTCA
1 TATGGAAAGCCCACCAAAGACTATCTCA
118128262 AAGACGGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (28 bp):
TATGGAAAGCCCACCAAAGACTATCTCA
Found at i:118130475 original size:80 final size:80
Alignment explanation
Indices: 118130342--118130531 Score: 249
Period size: 80 Copynumber: 2.4 Consensus size: 80
118130332 AATGATATCT
* * * * *
118130342 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTGTG
1 GGGTTAATTCCCAAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCG
*
118130407 CGAGTTACTA-AATCC
66 CGAATTACTATAA-CC
*
118130422 GGGTTAATTCCCAAAGGCAATTGTGCGAGTTACCAAATCTGGGTTAAGTCCCGAAGGCATTTGCG
1 GGGTTAATTCCCAAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCG
118130487 CGAATTACTATAACC
66 CGAATTACTATAACC
* * * *
118130502 GGGCT-ATGTCCCAAAGACAATCGAGCGAGT
1 GGGTTAAT-TCCCAAAGGCAATTGTGCGAGT
118130532 AGCTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
79 2 0.02
80 93 0.96
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (80 bp):
GGGTTAATTCCCAAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCG
CGAATTACTATAACC
Found at i:118130513 original size:40 final size:40
Alignment explanation
Indices: 118130342--118130504 Score: 247
Period size: 40 Copynumber: 4.1 Consensus size: 40
118130332 AATGATATCT
118130342 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
118130382 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * * *
118130422 GGGTTAATTCCCAAAGGCAATTGTGCGAGTTACCAAATCT
1 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * *
118130462 GGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CC
1 GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
118130502 GGG
1 GGG
118130505 CTATGTCCCA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
40 109 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
GGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:118138433 original size:35 final size:38
Alignment explanation
Indices: 118138378--118138483 Score: 148
Period size: 35 Copynumber: 2.8 Consensus size: 38
118138368 TTCGAATGAT
*
118138378 ATCCGGG-TAATTCCCGAAGGCATTTGTGCGAGTT-AA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTCAA
118138414 ATCCGGGTTAA-T-CCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT--CAA
*
118138452 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
118138484 ATTACTATAA
Statistics
Matches: 63, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
35 21 0.33
36 8 0.13
37 3 0.05
38 13 0.21
39 1 0.02
40 17 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTCAA
Found at i:118138478 original size:40 final size:39
Alignment explanation
Indices: 118138378--118138511 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 39
118138368 TTCGAATGAT
*
118138378 ATCCGGG-TAATTCCCGAAGGCATTTGTGCGAGTT--AA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAA
118138414 ATCCGGGTTAA-T-CCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CAA
* *
118138452 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC-A-A
* *
118138493 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
118138512 ACAATCGAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
35 21 0.24
36 8 0.09
37 3 0.03
38 13 0.15
39 2 0.02
40 37 0.43
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAA
Found at i:118145631 original size:40 final size:40
Alignment explanation
Indices: 118145557--118145702 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
118145547 CCGCACCAAG
* * * * * *
118145557 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
118145597 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
118145637 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
118145677 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
118145703 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:118145717 original size:40 final size:40
Alignment explanation
Indices: 118145589--118145739 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
118145579 ATCACGATTT
* * * **
118145589 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
118145629 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
118145669 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
118145709 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
118145740 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 14 0.15
40 79 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:118150241 original size:3 final size:3
Alignment explanation
Indices: 118150233--118150262 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
118150223 GCGCGCTCAG
118150233 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
118150263 TAGCTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:118152245 original size:35 final size:35
Alignment explanation
Indices: 118152145--118152303 Score: 112
Period size: 35 Copynumber: 4.5 Consensus size: 35
118152135 AATACTCAAG
* * * *
118152145 GTTCATTATATCATCACATAT-GACCAAATATACAA
1 GTTCAATATAGCATCACATGTAG-CCAAATATATAA
* *
118152180 GTACAATATATCATCATACATG--G-CAGAATATATAA
1 GTTCAATATAGCATC--ACATGTAGCCA-AATATATAA
* *
118152215 GCTCAATATAGCATCACATGTAGTCAAATAT-TCAA
1 GTTCAATATAGCATCACATGTAGCCAAATATAT-AA
* * * **
118152250 GTTTAATATAACATCACATGTGGCCAAATATACGA
1 GTTCAATATAGCATCACATGTAGCCAAATATATAA
*
118152285 GTTCAATATTGCATCACAT
1 GTTCAATATAGCATCACAT
118152304 ATGTACATAC
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
33 5 0.05
34 3 0.03
35 84 0.85
36 3 0.03
37 4 0.04
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (35 bp):
GTTCAATATAGCATCACATGTAGCCAAATATATAA
Found at i:118157234 original size:40 final size:39
Alignment explanation
Indices: 118157190--118157371 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
118157180 GTTCAAAACA
* * ** * *
118157190 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
118157230 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
118157270 CCTTCGAGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
118157309 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
118157348 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
118157372 CTCGAACATT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 39 0.31
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:118157301 original size:39 final size:39
Alignment explanation
Indices: 118157220--118157371 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
118157210 TATGGTAACC
* * * *
118157220 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
* *
118157260 CGCACAATTGCCTTCGAGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
118157299 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
118157338 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
118157372 CTCGAACATT
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.85
40 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:118169915 original size:46 final size:46
Alignment explanation
Indices: 118169865--118170086 Score: 274
Period size: 46 Copynumber: 4.8 Consensus size: 46
118169855 TGTTTGGGCA
*
118169865 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
118169911 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
118169957 TCCGAACTCATTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
118170002 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
118170050 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118170087 GCGGGTTACA
Statistics
Matches: 153, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.02
43 7 0.05
45 1 0.01
46 107 0.70
47 26 0.17
48 1 0.01
50 5 0.03
51 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:118179741 original size:7 final size:7
Alignment explanation
Indices: 118179713--118179743 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
118179703 GATGATGAAT
*
118179713 GATGAGG
1 GATGATG
118179720 GATGATG
1 GATGATG
118179727 GATGATG
1 GATGATG
118179734 GATGATG
1 GATGATG
118179741 GAT
1 GAT
118179744 TAGGAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.45, T:0.26
Consensus pattern (7 bp):
GATGATG
Found at i:118186312 original size:22 final size:22
Alignment explanation
Indices: 118186287--118186363 Score: 57
Period size: 22 Copynumber: 3.5 Consensus size: 22
118186277 TTTAAAGTTT
*
118186287 AATGTGTTGGATTTATGACACA
1 AATGAGTTGGATTTATGACACA
* * ****
118186309 AATGAGTTGGCGCTTTA-AAGTTT
1 AATGAGTT-G-GATTTATGACACA
*
118186332 AATGTGTTGGATTTATGACACA
1 AATGAGTTGGATTTATGACACA
118186354 AATGAGTTGG
1 AATGAGTTGG
118186364 TGGCCTAGTG
Statistics
Matches: 37, Mismatches: 15, Indels: 6
0.64 0.26 0.10
Matches are distributed among these distances:
21 5 0.14
22 18 0.49
23 9 0.24
24 5 0.14
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (22 bp):
AATGAGTTGGATTTATGACACA
Found at i:118186337 original size:45 final size:45
Alignment explanation
Indices: 118186273--118186363 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
118186263 GCAAGTAGGT
118186273 GCGCTTTAAAGTTTAATGTGTTGGATTTATGACACAAATGAGTTG
1 GCGCTTTAAAGTTTAATGTGTTGGATTTATGACACAAATGAGTTG
118186318 GCGCTTTAAAGTTTAATGTGTTGGATTTATGACACAAATGAGTTG
1 GCGCTTTAAAGTTTAATGTGTTGGATTTATGACACAAATGAGTTG
118186363 G
1 G
118186364 TGGCCTAGTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.09, G:0.25, T:0.37
Consensus pattern (45 bp):
GCGCTTTAAAGTTTAATGTGTTGGATTTATGACACAAATGAGTTG
Found at i:118187000 original size:27 final size:27
Alignment explanation
Indices: 118186970--118187040 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
118186960 CGACTTGTAA
118186970 AATTACCAAAGTACTCC-CAATTTACAG
1 AATTACCAAAGTAC-CCTCAATTTACAG
****
118186997 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAG
*
118187024 AATTACCAAAATACCCT
1 AATTACCAAAGTACCCT
118187041 TGGTTTATAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCAATTTACAG
Found at i:118187047 original size:27 final size:27
Alignment explanation
Indices: 118187024--118187147 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
118187014 CAATTTACAG
118187024 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
118187051 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
118187078 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
**
118187105 AATTACCAAAATACCAATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
118187132 AATTACTAAAATACCC
1 AATTACCAAAATACCC
118187148 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 81 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:118187066 original size:54 final size:53
Alignment explanation
Indices: 118187008--118187119 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
118186998 ATTACCGTTT
118187008 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
118187062 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
118187116 TACC
1 TACC
118187120 AATGGTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 2 0.04
54 39 0.78
55 7 0.14
56 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:118187126 original size:54 final size:54
Alignment explanation
Indices: 118187024--118187147 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
118187014 CAATTTACAG
* ** *
118187024 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
* *
118187078 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
118187132 AATTACTAAAATACCC
1 AATTACTAAAATACCC
118187148 CTGTAGGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
Found at i:118187160 original size:27 final size:27
Alignment explanation
Indices: 118187130--118187191 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
118187120 AATGGTTTGA
118187130 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
118187157 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
118187184 AAAATTAC
1 AAAATTAC
118187192 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:118187160 original size:54 final size:54
Alignment explanation
Indices: 118187024--118187173 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
118187014 CAATTTACAG
* ** * ** *
118187024 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
118187078 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
118187132 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
118187174 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 79 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:118187176 original size:81 final size:81
Alignment explanation
Indices: 118187024--118187176 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
118187014 CAATTTACAG
** **
118187024 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
118187089 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
118187105 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
118187168 AATACCCTT
64 AATACCCTT
118187177 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:118187844 original size:28 final size:28
Alignment explanation
Indices: 118187812--118187880 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
118187802 GAGTACATCA
118187812 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
118187840 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
118187868 CGATA-TACCCCTA
1 CGAAATTACCCCTA
118187881 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:118192747 original size:14 final size:12
Alignment explanation
Indices: 118192721--118192745 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
118192711 ATGTGCCAGG
118192721 CCGTGTGTCACA
1 CCGTGTGTCACA
118192733 CCGTGTGTCACA
1 CCGTGTGTCACA
118192745 C
1 C
118192746 ACGGTCAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.24, T:0.24
Consensus pattern (12 bp):
CCGTGTGTCACA
Found at i:118194022 original size:24 final size:25
Alignment explanation
Indices: 118193957--118194023 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
118193947 GCTTTATCAT
*
118193957 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCCTCTTTTA
* * *
118193982 ATAATTGGGGAAAAAGCC-CTTTTA
1 ATAACTGGGGCATAAGCCTCTTTTA
118194006 ATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCC
118194024 GCATAAGCCC
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
24 23 0.68
25 11 0.32
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
ATAACTGGGGCATAAGCCTCTTTTA
Found at i:118194135 original size:20 final size:20
Alignment explanation
Indices: 118194110--118194176 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
118194100 TTATGAATAC
118194110 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
118194130 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
118194150 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
118194170 ACCATGT
1 ATCATGT
118194177 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:118205588 original size:31 final size:30
Alignment explanation
Indices: 118205550--118205642 Score: 161
Period size: 31 Copynumber: 3.1 Consensus size: 30
118205540 CCTTTTCATA
118205550 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCAT-ATACTGGGCCGAAGCCT
118205581 TTTCATATTTCAT-TACTGGGCCGAAGCCT
1 TTTCATATTTCATATACTGGGCCGAAGCCT
118205610 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATA-TACTGGGCCGAAGCCT
118205641 TT
1 TT
118205643 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
29 29 0.48
31 31 0.52
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (30 bp):
TTTCATATTTCATATACTGGGCCGAAGCCT
Found at i:118205970 original size:24 final size:23
Alignment explanation
Indices: 118205833--118205970 Score: 178
Period size: 24 Copynumber: 6.0 Consensus size: 23
118205823 TGCTTTATCA
*
118205833 TATAACTGGAGGCCT-AG-CCTTT
1 TATAACTGG-GGCATAAGCCCTTT
*
118205855 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
118205879 CAATAACTGGGGCATAAGCCC-TT
1 -TATAACTGGGGCATAAGCCCTTT
118205902 TATAA-T-GGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
118205923 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
118205946 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
118205970 T
1 T
118205971 TCACTTCCTC
Statistics
Matches: 103, Mismatches: 5, Indels: 14
0.84 0.04 0.11
Matches are distributed among these distances:
20 12 0.12
21 8 0.08
22 9 0.09
23 28 0.27
24 46 0.45
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:118206046 original size:20 final size:20
Alignment explanation
Indices: 118206021--118206080 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
118206011 TATGATTACC
118206021 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
118206041 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
118206061 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
118206081 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:118206051 original size:11 final size:11
Alignment explanation
Indices: 118206021--118206075 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
118206011 TATGATTACC
118206021 TCATGTGCATA
1 TCATGTGCATA
*
118206032 TCA--TACATA
1 TCATGTGCATA
118206041 TCATGTGCATA
1 TCATGTGCATA
* *
118206052 TCA--TACATT
1 TCATGTGCATA
118206061 TCATGTGCATA
1 TCATGTGCATA
118206072 TCAT
1 TCAT
118206076 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:118206155 original size:25 final size:25
Alignment explanation
Indices: 118206123--118206170 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
118206113 ATACATAAAC
* * *
118206123 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
118206148 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
118206171 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:118216772 original size:40 final size:39
Alignment explanation
Indices: 118216681--118216831 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
118216671 TATAACCAGT
* *
118216681 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
118216721 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
118216761 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
118216801 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
118216832 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:118216815 original size:80 final size:80
Alignment explanation
Indices: 118216681--118216830 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
118216671 TATAACCAGT
*
118216681 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
118216745 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
118216761 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
118216824 CCCGGAT
64 CCCGGAT
118216831 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:118224691 original size:40 final size:40
Alignment explanation
Indices: 118224646--118224774 Score: 122
Period size: 40 Copynumber: 3.2 Consensus size: 40
118224636 CGGAATATAA
118224646 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
118224686 CCGGATAGAA-TGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
118224726 CCGGATGTAGCCACTAGT--ACAATTGCCTT-GGGTCTTAAC
1 CCGGATATAACCA-T-GTGCACAAATGCCTTCGGGTCTTAGC
118224765 CCGGATATAA
1 CCGGATATAA
118224775 TTTCCAGCAT
Statistics
Matches: 69, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
39 19 0.28
40 48 0.70
42 1 0.01
43 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:118224795 original size:79 final size:80
Alignment explanation
Indices: 118224664--118224810 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
118224654 AACCATGTGC
*
118224664 ACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGCCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGCCC
118224728 GGATGTAGCCACTAGT
65 GGATGTAGCCACTAGT
* * * * *
118224744 ACAATTGCCTT-GGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAGCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAGCC
118224806 CGGAT
64 CGGAT
118224811 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.05
79 44 0.76
80 11 0.19
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (80 bp):
ACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCCCG
GATGTAGCCACTAGT
Found at i:118241747 original size:28 final size:28
Alignment explanation
Indices: 118241715--118241771 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
118241705 CATTCCTAAG
118241715 AATAAATTAAAACATTAATTTTTCATAC
1 AATAAATTAAAACATTAATTTTTCATAC
118241743 AATAAATTAAAACATTAATTTTTCATAC
1 AATAAATTAAAACATTAATTTTTCATAC
118241771 A
1 A
118241772 CACACTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.39
Consensus pattern (28 bp):
AATAAATTAAAACATTAATTTTTCATAC
Found at i:118245043 original size:28 final size:28
Alignment explanation
Indices: 118245011--118245137 Score: 170
Period size: 28 Copynumber: 4.6 Consensus size: 28
118245001 ATTTGATACC
* *
118245011 GAGCACTAAGTGTGCGAAATCGGTCATT
1 GAGCACTAAGTGTGCGAAATTGGTTATT
*
118245039 GAGCACTAAGTGTGC-AAGTTGGTT-TT
1 GAGCACTAAGTGTGCGAAATTGGTTATT
* *
118245065 AAGCACTAAGTGTGC-AAATTGGATTTTT
1 GAGCACTAAGTGTGCGAAATTGG-TTATT
118245093 GAGCACTAAGTGTGCGAAATTGGTTATT
1 GAGCACTAAGTGTGCGAAATTGGTTATT
*
118245121 GAGCACTAAATGTGCGA
1 GAGCACTAAGTGTGCGA
118245138 GAAAATTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
26 22 0.25
27 8 0.09
28 51 0.58
29 7 0.08
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
GAGCACTAAGTGTGCGAAATTGGTTATT
Found at i:118245079 original size:54 final size:57
Alignment explanation
Indices: 118245012--118245137 Score: 170
Period size: 54 Copynumber: 2.3 Consensus size: 57
118245002 TTTGATACCG
*
118245012 AGCACTAAGTGTGCGAAATCGG-TCATTGAGCACTAAGTGTGC-AAGTTGGTT-TTA
1 AGCACTAAGTGTGCGAAATCGGATCATTGAGCACTAAGTGTGCGAAATTGGTTATTA
* ** *
118245066 AGCACTAAGTGTGC-AAATTGGATTTTTGAGCACTAAGTGTGCGAAATTGGTTATTG
1 AGCACTAAGTGTGCGAAATCGGATCATTGAGCACTAAGTGTGCGAAATTGGTTATTA
*
118245122 AGCACTAAATGTGCGA
1 AGCACTAAGTGTGCGA
118245138 GAAAATTTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
53 6 0.10
54 32 0.52
55 8 0.13
56 15 0.24
57 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.30
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAAATCGGATCATTGAGCACTAAGTGTGCGAAATTGGTTATTA
Found at i:118252717 original size:27 final size:28
Alignment explanation
Indices: 118252678--118252747 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
118252668 TTTGAGAGAT
** * *
118252678 GCACTAAACGTGCAAATTTGAT-ACCGA
1 GCACTAAGTGTGCAAAATCGATCACCGA
* **
118252705 GCACTAAGTGTGCAAAATCGGTCATTGA
1 GCACTAAGTGTGCAAAATCGATCACCGA
118252733 GCACTAAGTGTGCAA
1 GCACTAAGTGTGCAA
118252748 GTTGGTTTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
27 17 0.49
28 18 0.51
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (28 bp):
GCACTAAGTGTGCAAAATCGATCACCGA
Found at i:118252771 original size:30 final size:30
Alignment explanation
Indices: 118252735--118252791 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
118252725 GTCATTGAGC
118252735 ACTAAGTGTGCAAGTTGGTTTTAAGAAATA
1 ACTAAGTGTGCAAGTTGGTTTTAAGAAATA
118252765 ACTAAGTGTGCAAGTTGGTTTTAAGAA
1 ACTAAGTGTGCAAGTTGGTTTTAAGAA
118252792 CTAAGTGTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (30 bp):
ACTAAGTGTGCAAGTTGGTTTTAAGAAATA
Found at i:118252800 original size:26 final size:27
Alignment explanation
Indices: 118252735--118252808 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 27
118252725 GTCATTGAGC
118252735 ACTAAGTGTGCAAGTTGGTTTTAAGAAATA
1 ACTAAGTGTGCAAGTTGGTTTTAAG--A-A
118252765 ACTAAGTGTGCAAGTTGGTTTTAAG-A
1 ACTAAGTGTGCAAGTTGGTTTTAAGAA
*
118252791 ACTAAGTGTGCAAATTGG
1 ACTAAGTGTGCAAGTTGG
118252809 ATTTCCGAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 18 0.42
30 25 0.58
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (27 bp):
ACTAAGTGTGCAAGTTGGTTTTAAGAA
Found at i:118252829 original size:28 final size:26
Alignment explanation
Indices: 118252702--118252850 Score: 93
Period size: 28 Copynumber: 5.3 Consensus size: 26
118252692 AATTTGATAC
*
118252702 CGAGCACTAAGTGTGCAAAATCGGTCATT
1 CGAGCACTAAGTGTGC-AAATTGGT--TT
*
118252731 -GAGCACTAAGTGTGCAAGTTGGTTTT
1 CGAGCACTAAGTGTGCAAATTGG-TTT
* ** *
118252757 AAGAAATAACTAAGTGTGCAAGTTGGTTT
1 -CG--AGCACTAAGTGTGCAAATTGGTTT
** *
118252786 TAAGAACTAAGTGTGCAAATTGGATTT
1 CGAGCACTAAGTGTGCAAATTGG-TTT
*
118252813 CCGAGCACTAAGTGTGCGAAATCGGTTAT
1 -CGAGCACTAAGTGTGC-AAATTGGTT-T
*
118252842 TGAGCACTA
1 CGAGCACTA
118252851 TGTAACACCC
Statistics
Matches: 98, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
26 21 0.21
27 8 0.08
28 40 0.41
29 10 0.10
30 19 0.19
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (26 bp):
CGAGCACTAAGTGTGCAAATTGGTTT
Found at i:118254271 original size:40 final size:40
Alignment explanation
Indices: 118254226--118254355 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
118254216 CGGAATACAA
118254226 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
118254266 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
118254306 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
118254346 CCGGATATAA
1 CCGGATATAA
118254356 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:118254370 original size:40 final size:40
Alignment explanation
Indices: 118254226--118254389 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
118254216 CGGAATACAA
* **
118254226 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
118254266 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
118254306 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
118254346 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
118254386 CCGG
1 CCGG
118254390 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:118262325 original size:40 final size:40
Alignment explanation
Indices: 118262280--118262409 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
118262270 CGGAATACAA
118262280 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
118262320 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
118262360 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
118262400 CCGGATATAA
1 CCGGATATAA
118262410 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:118262424 original size:40 final size:40
Alignment explanation
Indices: 118262280--118262442 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
118262270 CGGAATACAA
* **
118262280 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
118262320 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
118262360 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
118262400 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
118262439 CCGG
1 CCGG
118262443 TATCATTCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:118275768 original size:40 final size:39
Alignment explanation
Indices: 118275603--118275786 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
118275593 AAATTGAATG
* * *
118275603 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
118275643 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
118275683 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
118275723 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
118275762 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
118275787 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:118275811 original size:80 final size:81
Alignment explanation
Indices: 118275643--118275831 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
118275633 GCTGGAAATT
* * * *
118275643 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
118275708 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
118275724 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
118275787 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
118275803 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
118275832 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:118283862 original size:40 final size:39
Alignment explanation
Indices: 118283698--118283880 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
118283688 AAATTGAATG
* *
118283698 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
118283737 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
118283777 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
118283817 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
118283856 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
118283881 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:118283905 original size:80 final size:81
Alignment explanation
Indices: 118283737--118283925 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
118283727 GCTGGAAATT
* * * *
118283737 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
118283802 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
118283818 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
118283881 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
118283897 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
118283926 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:118291678 original size:39 final size:40
Alignment explanation
Indices: 118291500--118291682 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
118291490 CCGCACCAAG
* * * * * * * *
118291500 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
118291540 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
118291580 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
118291620 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
118291659 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
118291683 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:118296126 original size:49 final size:49
Alignment explanation
Indices: 118296054--118296351 Score: 533
Period size: 49 Copynumber: 6.1 Consensus size: 49
118296044 ACATAATAAT
118296054 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
118296103 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
118296152 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
118296201 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
118296250 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
118296299 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
118296348 ATAT
1 ATAT
118296352 ATGTGGTAAA
Statistics
Matches: 241, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 241 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
Found at i:118296484 original size:37 final size:37
Alignment explanation
Indices: 118296434--118296506 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
118296424 TTCCTGGTGA
118296434 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
1 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
*
118296471 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
118296507 AGACTTCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
Done.