Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 384 of 770
Found at i:118299103 original size:37 final size:36
Alignment explanation
Indices: 118299052--118299138 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
118299042 TACGAAGTCT
*
118299052 TACCCGGACATAATCTCCACATGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
118299088 GTACCCGGACGTAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
118299125 TCACCCGGAACATA
1 T-ACCCGG-ACATA
118299139 TTTCTAAGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.89
38 4 0.09
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:118299274 original size:49 final size:49
Alignment explanation
Indices: 118299207--118299602 Score: 720
Period size: 49 Copynumber: 8.1 Consensus size: 49
118299197 TTTACCACAT
* * *
118299207 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
118299256 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
118299305 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
118299354 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
118299403 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
118299452 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
118299501 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
118299550 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
118299599 ATAT
1 ATAT
118299603 ATTATTATGT
Statistics
Matches: 337, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 337 1.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (49 bp):
ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:118299379 original size:27 final size:27
Alignment explanation
Indices: 118299349--118299480 Score: 72
Period size: 27 Copynumber: 5.3 Consensus size: 27
118299339 ATTAGGCCTT
118299349 ATCACATATGTATACATTTTCACATTC
1 ATCACATATGTATACATTTTCACATTC
* ** **
118299376 ATCACAT-CG--GCCATTAGGC-C-TT-
1 ATCACATATGTATACATT-TTCACATTC
118299398 ATCACATATGTATACATTTTCACATTC
1 ATCACATATGTATACATTTTCACATTC
* ** **
118299425 ATCACAT-CG--GCCATTAGGC-C-TT-
1 ATCACATATGTATACATT-TTCACATTC
118299447 ATCACATATGTATACATTTTCACATTC
1 ATCACATATGTATACATTTTCACATTC
118299474 ATCACAT
1 ATCACAT
118299481 CGGCCATTAG
Statistics
Matches: 71, Mismatches: 20, Indels: 28
0.60 0.17 0.24
Matches are distributed among these distances:
22 14 0.20
23 6 0.08
24 12 0.17
25 12 0.17
26 6 0.08
27 21 0.30
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (27 bp):
ATCACATATGTATACATTTTCACATTC
Found at i:118312806 original size:25 final size:25
Alignment explanation
Indices: 118312778--118312826 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
118312768 GGCCAACTAG
*
118312778 AATACGTCACAAAGGCTTCATACAA
1 AATACGTCACAAAGGCATCATACAA
*
118312803 AATACGTCATAAAGGCATCATACA
1 AATACGTCACAAAGGCATCATACA
118312827 GAATCACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.22, G:0.12, T:0.20
Consensus pattern (25 bp):
AATACGTCACAAAGGCATCATACAA
Found at i:118315633 original size:40 final size:40
Alignment explanation
Indices: 118315431--118315638 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
118315421 TGAATGATAC
* * *
118315431 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
118315471 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
118315511 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
118315551 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
118315591 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
118315631 CC-GGCTAA
1 CCGGGCTAA
118315639 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:118330232 original size:27 final size:26
Alignment explanation
Indices: 118330188--118330239 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
118330178 CTCGGTGCAA
*
118330188 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
118330215 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
118330240 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:118333106 original size:43 final size:42
Alignment explanation
Indices: 118332991--118333115 Score: 141
Period size: 41 Copynumber: 3.0 Consensus size: 42
118332981 TGCCATTGAT
*
118332991 ATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGGCATC
1 ATATGTGATTACGTGTAAGACCACGTCTGGGACAGT-GGCATC
* * *
118333033 ATATTTTA-TCCGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 ATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCATC
*
118333074 GATATGTGATTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 -ATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCAT
118333116 TGTACGATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
41 28 0.41
42 14 0.20
43 26 0.38
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:118336471 original size:28 final size:28
Alignment explanation
Indices: 118336425--118336493 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
118336415 TTTAAAACCC
*
118336425 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118336452 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118336480 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
118336494 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:118338146 original size:20 final size:20
Alignment explanation
Indices: 118338123--118338160 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118338113 CACATCCAAA
*
118338123 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
118338143 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
118338161 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:118338357 original size:18 final size:17
Alignment explanation
Indices: 118338324--118338357 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
118338314 ATTTAGGCCT
*
118338324 TGTGGGCCACATGGGTG
1 TGTGGGCCACACGGGTG
118338341 TGTGGGCCCACACGGGT
1 TGTGGG-CCACACGGGT
118338358 AGGCCATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (17 bp):
TGTGGGCCACACGGGTG
Found at i:118339510 original size:24 final size:25
Alignment explanation
Indices: 118339461--118339510 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
118339451 ACCCTTCTGA
* *
118339461 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCACTTCCCTCTCATTGTTC
118339486 TCTCTTCA-TTCCCT-TCCATTGTTC
1 TCTCTTCACTTCCCTCT-CATTGTTC
118339510 T
1 T
118339511 TCACTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 1 0.05
24 13 0.59
25 8 0.36
ACGTcount: A:0.08, C:0.36, G:0.02, T:0.54
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCTCATTGTTC
Found at i:118342834 original size:43 final size:43
Alignment explanation
Indices: 118342770--118342856 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
118342760 ATATGTGATT
118342770 TCGATATGTGTGTACGAGTAAGACC-CTATCTGGGACAATGGCA
1 TCGATATGTGTGTACGAGTAAGACCAC-ATCTGGGACAATGGCA
* *
118342813 TCGATATGTG-GCTAC-ATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGTG-TACGA-GTAAGACCACATCTGGGACAATGGCA
118342856 T
1 T
118342857 TGTACGATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
TCGATATGTGTGTACGAGTAAGACCACATCTGGGACAATGGCA
Found at i:118346914 original size:25 final size:25
Alignment explanation
Indices: 118346886--118346936 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
118346876 ACGGATTAAA
118346886 GGTGTTATAGTCAACCAAATTGATC
1 GGTGTTATAGTCAACCAAATTGATC
118346911 GGTGTTATAGTCAACCAAATTGATC
1 GGTGTTATAGTCAACCAAATTGATC
118346936 G
1 G
118346937 CACTATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (25 bp):
GGTGTTATAGTCAACCAAATTGATC
Found at i:118349070 original size:40 final size:40
Alignment explanation
Indices: 118349025--118349192 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
118349015 CGGAATATAA
118349025 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
118349065 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
118349105 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
118349145 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
118349185 CCGGATAT
1 CCGGATAT
118349193 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:118357136 original size:40 final size:39
Alignment explanation
Indices: 118357025--118357174 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
118357015 ATATAACCGT
* * *
118357025 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
118357065 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
118357105 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
*
118357145 GCATAATTG-CTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
118357175 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
38 13 0.14
39 9 0.09
40 73 0.77
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:118367268 original size:40 final size:40
Alignment explanation
Indices: 118367160--118367409 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
118367150 CGGGATTTAA
* * * * *
118367160 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
118367200 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118367240 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118367280 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118367320 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118367360 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118367400 CCGGATATAT
1 CCGGATATAT
118367410 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:118371984 original size:49 final size:49
Alignment explanation
Indices: 118371928--118372142 Score: 396
Period size: 49 Copynumber: 4.4 Consensus size: 49
118371918 TATCAAAATT
118371928 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
118371977 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
118372026 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
118372075 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
118372124 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
118372143 ATGTGGTAAA
Statistics
Matches: 161, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
48 4 0.02
49 153 0.95
50 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:118372265 original size:37 final size:37
Alignment explanation
Indices: 118372224--118372294 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
118372214 TTCCGGGTGA
118372224 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
118372261 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
118372295 TAAGACTTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.34, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
Found at i:118383185 original size:16 final size:17
Alignment explanation
Indices: 118383164--118383198 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
118383154 AAATATTATG
118383164 AAATAAA-AACAAACAA
1 AAATAAACAACAAACAA
*
118383180 AAATAAACATCAAACAA
1 AAATAAACAACAAACAA
118383197 AA
1 AA
118383199 GTCATCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.77, C:0.14, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACAACAAACAA
Found at i:118386472 original size:69 final size:69
Alignment explanation
Indices: 118386380--118386514 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
118386370 TATTTTTGTG
* *
118386380 TACTTTTGAGAATAATTTTAGGTGAATTGAGAGAGTATTTTGATAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
118386445 TGGC
66 TGGC
*
118386449 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTATTTTGAGAACAAAATTGGTTGGATCTAT
1 TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
118386514 T
66 T
118386515 CTCTAATGAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (69 bp):
TACTTTTGAGAATAATTTCAGGTGAATTGAGAGAGTATTTTGAGAACAAAATTGGTTGGATCTAT
TGGC
Found at i:118386491 original size:34 final size:33
Alignment explanation
Indices: 118386383--118386494 Score: 84
Period size: 34 Copynumber: 3.3 Consensus size: 33
118386373 TTTTGTGTAC
*
118386383 TTTTGAGAATAATTTTAGGTGAATTGAGAGAGTA
1 TTTTGAGAATAA-TTTAGGTGAATTGAGAGGGTA
* * * * ** *
118386417 TTTTGATAACAAAATT-GGTTGGATCT-ATTGGCTA
1 TTTTGAGAA-TAATTTAGG-TGAAT-TGAGAGGGTA
118386451 CTTTTGAGAATAATTTCAGGTGAATTGAGAGGGTA
1 -TTTTGAGAATAATTT-AGGTGAATTGAGAGGGTA
118386486 TTTTGAGAA
1 TTTTGAGAA
118386495 CAAAATTGGT
Statistics
Matches: 56, Mismatches: 15, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
33 2 0.04
34 32 0.57
35 20 0.36
36 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.38
Consensus pattern (33 bp):
TTTTGAGAATAATTTAGGTGAATTGAGAGGGTA
Found at i:118386880 original size:16 final size:16
Alignment explanation
Indices: 118386859--118386889 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
118386849 CGACCCAAAT
*
118386859 TAATTATTTTCATTAA
1 TAATTATTTTAATTAA
118386875 TAATTATTTTAATTA
1 TAATTATTTTAATTA
118386890 CTTTAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATTTTAATTAA
Found at i:118390595 original size:30 final size:29
Alignment explanation
Indices: 118390501--118390602 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
118390491 TATAGTGAAT
* * *
118390501 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
118390530 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
118390558 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
118390588 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
118390603 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:118392742 original size:46 final size:46
Alignment explanation
Indices: 118392692--118392867 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
118392682 TGGTTGAGCA
118392692 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
118392738 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
118392783 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
118392831 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118392868 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 5 0.04
46 62 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:118392848 original size:93 final size:93
Alignment explanation
Indices: 118392689--118392859 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
118392679 GGATGGTTGA
*
118392689 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
118392754 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
118392782 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
118392846 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
118392860 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:118395336 original size:40 final size:40
Alignment explanation
Indices: 118395291--118395378 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
118395281 ATTATTTGAT
118395291 TAAGTAAAACTATGATTATGGTATAATTGTATTATAATTG
1 TAAGTAAAACTATGATTATGGTATAATTGTATTATAATTG
*
118395331 TAAGTAAAATTATGATTATGGTATAATTGTATTATAATTG
1 TAAGTAAAACTATGATTATGGTATAATTGTATTATAATTG
118395371 TAACGTAA
1 TAA-GTAA
118395379 CTAATGAATT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.42
Consensus pattern (40 bp):
TAAGTAAAACTATGATTATGGTATAATTGTATTATAATTG
Found at i:118396619 original size:31 final size:31
Alignment explanation
Indices: 118396581--118396642 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
118396571 ATACTTCCAC
118396581 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
1 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
118396612 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
1 TCGCTAATCCCCCATAGAAGGATTAGTTCGT
118396643 CATGACTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
TCGCTAATCCCCCATAGAAGGATTAGTTCGT
Found at i:118401768 original size:16 final size:17
Alignment explanation
Indices: 118401733--118401769 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
118401723 AAAATTTAAT
118401733 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
118401750 AAAATAAAACCTAAGAA
1 AAAATAAAACCTAAGAA
118401767 AAA
1 AAA
118401770 GGCTATCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.73, C:0.11, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAATAAAACCTAAGAA
Found at i:118402727 original size:46 final size:46
Alignment explanation
Indices: 118402620--118402745 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 46
118402610 CCACATTATA
*
118402620 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG
1 AGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCAACGACATTGAGACG
* * * * *
118402668 AGAGCTAGTGTAAGACATGTTTGGGACATGCAACGGCCTTGAGATG
1 AGAGCCAGTGTAAGACATGTCTGGGACATGCAACGACATTGAGACG
118402714 TA-AGCCAGTGTAAGACATGTCTGGGACATGCA
1 -AGAGCCAGTGTAAGACATGTCTGGGACATGCA
118402746 TCGGGTACAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 41 0.59
47 14 0.20
48 14 0.20
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.21
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGCAACGACATTGAGACG
Found at i:118402759 original size:46 final size:48
Alignment explanation
Indices: 118402622--118402845 Score: 148
Period size: 46 Copynumber: 4.8 Consensus size: 48
118402612 ACATTATAAG
*
118402622 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC--G-ACATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGGTACA---AGATGTA
* * * * **
118402669 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCAACGGCCT-TGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-GTACAAGATGTA
118402716 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGGTACAAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGGTACAAGATGTA
* * * ** *
118402761 -GTCAGTGTAAGACCATGCCTGGGACATGGCATC-GGCATGGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGGTA-CAAGATGT-A
** *
118402809 GAGGTAGTGTAAGACCATGTCTGGGACATGGCGTCGG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
118402846 CCTCGATTTC
Statistics
Matches: 139, Mismatches: 23, Indels: 25
0.74 0.12 0.13
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 55 0.40
47 14 0.10
48 12 0.09
50 29 0.21
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGGTACAAGATGTA
Found at i:118408200 original size:55 final size:54
Alignment explanation
Indices: 118408044--118408240 Score: 157
Period size: 55 Copynumber: 3.6 Consensus size: 54
118408034 TTTCCTTTTT
* * * * *
118408044 AAACTTGCCATTGTCATGTCTTGACATGGT-TT-TATGTTGTATCCTTGCCTTAT-
1 AAACTTACCAATGTCATGTCTTGGCATGGTCTTACATG-AG-ATCCTTGCCTTATA
* * * * * * *
118408097 GAACTCACCATTGTCATGTCTTGGCGTGGACTTACATGGGATCTTTGCCTTATA
1 AAACTTACCAATGTCATGTCTTGGCATGGTCTTACATGAGATCCTTGCCTTATA
** * * ** *
118408151 ATAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA
1 A-AACTTACCAATGTCATGTCTTGGCATGGTCTTACATGAGATCCTTGCCTTATA
* *
118408206 AAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AAACTTACCAATGTCATGTCTTGGCATGGTCTTAC
118408241 TTGGTATCCT
Statistics
Matches: 111, Mismatches: 29, Indels: 7
0.76 0.20 0.05
Matches are distributed among these distances:
53 36 0.32
54 31 0.28
55 44 0.40
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (54 bp):
AAACTTACCAATGTCATGTCTTGGCATGGTCTTACATGAGATCCTTGCCTTATA
Found at i:118410602 original size:30 final size:30
Alignment explanation
Indices: 118410566--118410666 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
118410556 GACAAGATTG
* * *
118410566 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
118410596 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
118410624 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
118410653 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
118410667 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:118410678 original size:29 final size:28
Alignment explanation
Indices: 118410595--118410670 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
118410585 AAAATTGTAC
* *
118410595 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
118410623 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
118410652 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
118410671 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:118415825 original size:46 final size:48
Alignment explanation
Indices: 118415643--118415896 Score: 219
Period size: 46 Copynumber: 5.4 Consensus size: 48
118415633 TTATTTGTAT
* * *
118415643 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCAC-ATTATG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGA-GATGTAGA
* * *
118415689 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGTAGA
* * *
118415737 GCTAGTGTAAGA-CATGTCTAGGACATGTATCAGCCT-CGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATC-GGCTACGAGATGTAGA
*
118415783 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACAAGATGT-G-
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAGA
* * * *
118415828 TC-AGTGTAAGACCATGCCTAGGACATGGCATCGG-TACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTAC-GAGATGT-AGA
*
118415877 GCAAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACCATGTCT
118415897 AAGACATGGC
Statistics
Matches: 170, Mismatches: 22, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
44 9 0.05
45 19 0.11
46 69 0.41
47 31 0.18
48 24 0.14
49 2 0.01
50 16 0.09
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAGA
Found at i:118415939 original size:99 final size:96
Alignment explanation
Indices: 118415827--118416002 Score: 230
Period size: 96 Copynumber: 1.8 Consensus size: 96
118415817 TACAAGATGT
118415827 GTCAGTGTAAGACCATGCCTAG-GACATGGCATCGGTACGGATATGTGA-GAGCAAGTGTAAGAC
1 GTCAGTGTAAGACCATG-CTAGAGACATGGCATC-G-AC-GATATG-GATGAGCAAGTGTAAGAC
118415890 CATGTCTAAGACATGGCGTCGGCCACGATTTCAATA
61 CATGTCTAAGACATGGCGTCGGCCACGATTTCAATA
* * ** *
118415926 GTCAGTGTAAGACCATGTTCGAGACATGGCATCGACTTTATGGATGAGCCAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGCTAGAGACATGGCATCGACGATATGGATGAGCAAGTGTAAGACCATGT
**
118415991 CTGGGACATGGC
66 CTAAGACATGGC
118416003 ATTGGCATTA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
95 2 0.03
96 33 0.49
97 2 0.03
98 3 0.04
99 28 0.41
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGCTAGAGACATGGCATCGACGATATGGATGAGCAAGTGTAAGACCATGT
CTAAGACATGGCGTCGGCCACGATTTCAATA
Found at i:118417120 original size:17 final size:19
Alignment explanation
Indices: 118417098--118417136 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
118417088 AAGGGAGAAT
118417098 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
118417115 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
118417135 AA
1 AA
118417137 TGGGTGTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 5 0.26
20 10 0.53
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:118418533 original size:30 final size:29
Alignment explanation
Indices: 118418472--118418574 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
118418462 AAAATTGTAC
* *
118418472 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
118418501 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
118418531 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
118418560 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
118418575 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:118418538 original size:59 final size:60
Alignment explanation
Indices: 118418442--118418574 Score: 196
Period size: 59 Copynumber: 2.2 Consensus size: 60
118418432 GACAAGATTG
* * *
118418442 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * * *
118418502 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
118418561 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
118418575 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 51 0.77
60 15 0.23
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:118421499 original size:46 final size:46
Alignment explanation
Indices: 118421355--118421572 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
118421345 TTTGTATGCT
* * * ** *
118421355 AGTGTAAGACGTGTCTGGGACATGCGTCGGCCACA-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATAGAGACGAGAGCC
* *
118421401 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGACGAGAGCC
* ** * *
118421449 AGTGTAAGACATGACTAAGACATGCATCGGCCTAGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGACG-AGAGCC
* * * *
118421495 AGTGTAAGACATGTCTGGGACATGCATTGGC-TACA-A-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGACGA-GAGCC
118421539 AGTGTAAGACCATG-CATGGGACATGGCATCGGCA
1 AGTGTAAGA-CATGTC-TGGGACAT-GCATCGGCA
118421573 CGGATATGTG
Statistics
Matches: 139, Mismatches: 23, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.09
45 15 0.11
46 60 0.43
47 27 0.19
48 22 0.16
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGACGAGAGCC
Found at i:118423879 original size:80 final size:80
Alignment explanation
Indices: 118423795--118423943 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
118423785 TATGGTAACC
* * * *
118423795 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
118423859 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
118423875 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
118423940 CCGG
66 CCGG
118423944 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:118423885 original size:40 final size:38
Alignment explanation
Indices: 118423836--118423943 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
118423826 ATCACGATTT
*
118423836 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
118423876 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
118423916 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
118423944 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:118433636 original size:40 final size:40
Alignment explanation
Indices: 118433577--118433745 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
118433567 CGGGACTTTA
* * *
118433577 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
118433617 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
118433657 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
118433697 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
118433737 CCCGGATAT
1 CCCGGATAT
118433746 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:118434593 original size:17 final size:19
Alignment explanation
Indices: 118434570--118434615 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
118434560 AAGAAGCATG
118434570 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
118434588 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
118434606 AATCATGCTC
1 AATCATGCTC
118434616 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:118437404 original size:6 final size:6
Alignment explanation
Indices: 118437393--118437524 Score: 123
Period size: 6 Copynumber: 21.8 Consensus size: 6
118437383 AACCAAAATG
*
118437393 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
118437441 AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
* *
118437489 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
118437525 GTGAATGCAA
Statistics
Matches: 105, Mismatches: 8, Indels: 26
0.76 0.06 0.19
Matches are distributed among these distances:
5 9 0.09
6 87 0.83
7 6 0.06
8 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:118437408 original size:30 final size:30
Alignment explanation
Indices: 118437393--118437524 Score: 205
Period size: 30 Copynumber: 4.4 Consensus size: 30
118437383 AACCAAAATG
*
118437393 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
118437423 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
118437453 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
118437483 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
118437514 AGAATCAGAAT
1 AGAATCAGAAT
118437525 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
29 1 0.01
30 74 0.76
31 22 0.23
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:118437690 original size:27 final size:26
Alignment explanation
Indices: 118437642--118437715 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 26
118437632 AGCATGGCTG
* ** *
118437642 CCAGAACAGATATCGTAACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
118437668 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
118437695 CCAAAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
118437716 AACCCACCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:118437928 original size:22 final size:22
Alignment explanation
Indices: 118437880--118437938 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
118437870 GTAAATACGT
*
118437880 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
118437902 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
118437924 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
118437939 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:118438065 original size:27 final size:26
Alignment explanation
Indices: 118438026--118438108 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
118438016 TCGATCGGTC
* *
118438026 AACAGATATTGTGACAGAGTCACTAG
1 AACAGATATTGTGACAGAGCCACCAG
*
118438052 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
* *
118438079 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAG
118438106 AAC
1 AAC
118438109 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:118438336 original size:27 final size:27
Alignment explanation
Indices: 118438306--118438502 Score: 232
Period size: 27 Copynumber: 7.3 Consensus size: 27
118438296 AGGGGCAAAA
* * * *
118438306 TGGTAATTTTACCCCACAAAGGTATCT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
118438333 TGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
118438360 TGGTATTTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * **
118438387 CGATAATTCTACCCTACGGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
118438414 TGGTATTTCTACCCTACAATGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * *
118438441 TAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
118438468 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
118438495 TAGTAATT
1 TGGTAATT
118438503 TCACAATTGA
Statistics
Matches: 142, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAAGGGTATTT
Found at i:118438495 original size:54 final size:54
Alignment explanation
Indices: 118438306--118438502 Score: 261
Period size: 54 Copynumber: 3.6 Consensus size: 54
118438296 AGGGGCAAAA
* * * * *
118438306 TGGTAATTTTACCCCACAAAGGTATCTTGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTT
* * *
118438360 TGGTATTTCTACCCTACAAGGGTA-TTTCGATAATTCTACCCTACGGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTT
* * *
118438414 TGGTATTTCTACCCTACAATGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTT
* *
118438468 CGGTAATTCTACCCTACAGGGGTATTTTAGTAATT
1 TGGTAATTCTACCCTACAAGGGTATTTTAGTAATT
118438503 TCACAATTGA
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 3 0.02
54 119 0.94
55 4 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTT
Found at i:118438527 original size:26 final size:26
Alignment explanation
Indices: 118438498--118438600 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 26
118438488 GGTATTTTAG
*
118438498 TAATTTCACAATTGAGGGTAAAACAC
1 TAATTTTACAATTGAGGGTAAAACAC
* *
118438524 TAATTTTGTA-AATCGAGGGTAAAACAG
1 TAA-TTT-TACAATTGAGGGTAAAACAC
*
118438551 TAATTTTACAAATTGAGGGTAAAAC-G
1 TAATTTTAC-AATTGAGGGTAAAACAC
*
118438577 TAATTCTGTA-AATCGAGGGTAAAA
1 TAATT-T-TACAATTGAGGGTAAAA
118438601 TAGTAATTCT
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
25 2 0.03
26 25 0.38
27 36 0.55
28 3 0.05
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (26 bp):
TAATTTTACAATTGAGGGTAAAACAC
Found at i:118438541 original size:27 final size:27
Alignment explanation
Indices: 118438511--118438672 Score: 175
Period size: 27 Copynumber: 6.0 Consensus size: 27
118438501 TTTCACAATT
* *
118438511 GAGGGTAAAACACTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* ** *
118438538 GAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAACAGTAATTCTGTAAATC
118438565 GAGGGTAAAAC-GTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
118438591 GAGGGTAAAATAGTAATTCTATAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
* **
118438617 TAAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAACAGTAATTCTGTAAATC
** *
118438645 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
118438672 G
1 G
118438673 GGAGTACTTT
Statistics
Matches: 117, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 22 0.19
27 94 0.80
28 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTCTGTAAATC
Found at i:118438544 original size:53 final size:53
Alignment explanation
Indices: 118438496--118438654 Score: 196
Period size: 53 Copynumber: 3.0 Consensus size: 53
118438486 GGGGTATTTT
*
118438496 AGTAATTTCAC-AATTGAGGGTAAAACACTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTCACAAATTGAGGGTAAAAC-CTAATTCTGTAAATCGAGGGTAAAAC
* * *
118438549 AGTAATTTTACAAATTGAGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTTCACAAATTGAGGGTAAAACCTAATTCTGTAAATCGAGGGTAAAAC
* * * **
118438602 AGTAA-TTCTATAAACTAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 AGTAATTTC-ACAAATTGAGGGTAAAA-CCTAATTCTGTAAATCGAGGGTAAAA
118438655 TGGTAATTCT
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
52 2 0.02
53 52 0.55
54 40 0.43
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (53 bp):
AGTAATTTCACAAATTGAGGGTAAAACCTAATTCTGTAAATCGAGGGTAAAAC
Found at i:118438653 original size:54 final size:53
Alignment explanation
Indices: 118438512--118438669 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 53
118438502 TTCACAATTG
* * * * * * *
118438512 AGGGTAAAACACTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTACAAATTG
1 AGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTA
118438566 AGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTA
1 AGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTA
* *
118438619 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAA
1 AGGGTAAAA-CGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAA
118438670 TCGGGAGTAC
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
53 45 0.48
54 49 0.52
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.29
Consensus pattern (53 bp):
AGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTA
Found at i:118438703 original size:54 final size:54
Alignment explanation
Indices: 118438524--118438669 Score: 213
Period size: 53 Copynumber: 2.7 Consensus size: 54
118438514 GGTAAAACAC
* * * * * * *
118438524 TAATTTTGTAAATCGAGGGTAAAACAGTAATTTTACAAATTGAGGGTAAAA-CG
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTAAGGGTAAAATGG
118438577 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTAAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTAAGGGTAAAATGG
*
118438631 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAA
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAA
118438670 TCGGGAGTAC
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 45 0.54
54 39 0.46
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.31
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTAAGGGTAAAATGG
Found at i:118442498 original size:39 final size:40
Alignment explanation
Indices: 118442392--118442611 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
118442382 AATGATGTCT
* * *
118442392 GGGCTAAGTCCCGAAGGC-TTTGTGCTTAGTGACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATTCC
* *
118442432 GGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
118442472 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTGATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
118442511 GGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTATTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
118442549 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
118442589 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
118442612 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 17, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
38 24 0.15
39 57 0.36
40 68 0.43
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:118444090 original size:6 final size:6
Alignment explanation
Indices: 118444079--118444198 Score: 99
Period size: 6 Copynumber: 19.8 Consensus size: 6
118444069 AACCAAAATG
*
118444079 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
118444127 AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATT
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
*
118444175 AG-GTGAC AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAAT
118444199 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 26
0.73 0.06 0.20
Matches are distributed among these distances:
5 9 0.10
6 75 0.81
7 6 0.06
8 3 0.03
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:118444094 original size:30 final size:29
Alignment explanation
Indices: 118444058--118444173 Score: 128
Period size: 30 Copynumber: 3.9 Consensus size: 29
118444048 AAGAAACATT
* * *
118444058 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
118444088 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
118444118 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
118444148 ATCA-ATATTAGTAACAGAATCAGAAT
1 ATCAGA-ATT-GTAACAGAATCAGAAT
118444174 TAGGTGACAG
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
29 1 0.01
30 74 0.95
31 3 0.04
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.21
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:118444106 original size:24 final size:24
Alignment explanation
Indices: 118444079--118444198 Score: 116
Period size: 24 Copynumber: 4.7 Consensus size: 24
118444069 AACCAAAATG
118444079 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
118444103 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAGAATC------AGTAAC
* **
118444133 AGAATCAGAATCAGAATCAATATT
1 AGAATCAGAATCAGAATCAGTAAC
* *
118444157 AGTAA-CAGAATCAGAATTAGGTGAC
1 AG-AATCAGAATCAGAATCA-GTAAC
118444182 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
118444199 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
24 38 0.48
25 17 0.22
30 24 0.30
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAAC
Found at i:118444353 original size:27 final size:26
Alignment explanation
Indices: 118444316--118444381 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
118444306 AGCATGGCTT
*
118444316 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
118444342 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
118444369 CCAGAATCAGATA
1 CCAGAA-CAGATA
118444382 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:118444386 original size:27 final size:27
Alignment explanation
Indices: 118444316--118444389 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
118444306 AGCATGGCTT
* *
118444316 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
118444342 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
118444369 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
118444390 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:118444396 original size:27 final size:27
Alignment explanation
Indices: 118444340--118444397 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
118444330 GTGACAGAGT
* * *
118444340 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
118444367 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
118444394 CACC
1 CACC
118444398 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:118444602 original size:22 final size:22
Alignment explanation
Indices: 118444554--118444612 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
118444544 GTAAATACGT
*
118444554 TTGGCACGAAGCCATAGTCTAG
1 TTGGCACAAAGCCATAGTCTAG
* *
118444576 ATGGCACAAAGCCATA-TTTAGG
1 TTGGCACAAAGCCATAGTCTA-G
*
118444598 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
118444613 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 3 0.10
22 28 0.90
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCTAG
Found at i:118444747 original size:27 final size:26
Alignment explanation
Indices: 118444700--118444755 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
118444690 TCGATCGATC
118444700 AACAGATATTGTGGCAGAGCCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
*
118444726 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
118444753 AAC
1 AAC
118444756 GCTTCCTCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:118444984 original size:27 final size:27
Alignment explanation
Indices: 118444954--118445141 Score: 241
Period size: 27 Copynumber: 7.0 Consensus size: 27
118444944 GGGGCAAAAT
* * * *
118444954 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
118444981 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
118445008 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
118445035 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
118445062 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
118445089 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
118445116 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
118445142 TAGTAATTTC
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:118445098 original size:81 final size:81
Alignment explanation
Indices: 118444973--118445141 Score: 266
Period size: 81 Copynumber: 2.1 Consensus size: 81
118444963 ACCCCACAAA
* * *
118444973 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGAT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
*
118445038 AATTCTACCCTACGGG
66 AATTCTACCCTACAGG
* * * *
118445054 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTATAAGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
118445119 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
118445135 GGTATTT
1 GGTATTT
118445142 TAGTAATTTC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAGG
Found at i:118445309 original size:27 final size:27
Alignment explanation
Indices: 118445153--118445292 Score: 196
Period size: 27 Copynumber: 5.2 Consensus size: 27
118445143 AGTAATTTCA
* * *
118445153 AAATTGAGGGTAAAATAGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTGT
*
118445180 AAAGT-GAGGGTAAAA-CGTAATTCTGT
1 AAA-TCGAGGGTAAAATGGTAATTCTGT
*
118445206 AAATCGAGGGTAAAATAGTAATTCTGT
1 AAATCGAGGGTAAAATGGTAATTCTGT
118445233 AAA-CTGAGGGTAAAATGGTAATTCTGT
1 AAATC-GAGGGTAAAATGGTAATTCTGT
118445260 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAATCGAGGGTAAAATGGTAATTCTGT
118445287 AAATCG
1 AAATCG
118445293 GGAGTACTTT
Statistics
Matches: 104, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
25 1 0.01
26 23 0.22
27 78 0.75
28 2 0.02
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AAATCGAGGGTAAAATGGTAATTCTGT
Found at i:118445323 original size:54 final size:54
Alignment explanation
Indices: 118445153--118445289 Score: 222
Period size: 53 Copynumber: 2.6 Consensus size: 54
118445143 AGTAATTTCA
* * * *
118445153 AAATTGAGGGTAAAATAGTAATTCTATAAAGTGAGGGTAAAA-CGTAATTCTGT
1 AAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGT
118445206 AAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGT
1 AAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGT
*
118445260 AAATCGAGGGTAAAATGGTAATTCTGTAAA
1 AAATCGAGGGTAAAATAGTAATTCTGTAAA
118445290 TCGGGAGTAC
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 39 0.50
54 39 0.50
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (54 bp):
AAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGT
Found at i:118447297 original size:6 final size:6
Alignment explanation
Indices: 118447286--118447417 Score: 105
Period size: 6 Copynumber: 21.8 Consensus size: 6
118447276 AACCAAAATG
*
118447286 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
118447334 AGTAA-C AGAATC AGAATC AAAATC A-ATATT AGTAA-C AGAATC AAAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
* *
118447382 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
118447418 GTGAATGCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 26
0.73 0.08 0.19
Matches are distributed among these distances:
5 9 0.09
6 84 0.82
7 6 0.06
8 3 0.03
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:118447338 original size:30 final size:30
Alignment explanation
Indices: 118447286--118447417 Score: 187
Period size: 30 Copynumber: 4.4 Consensus size: 30
118447276 AACCAAAATG
*
118447286 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
118447316 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
118447346 AGAATCAAAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
* *
118447376 AAAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
118447407 AGAATCAGAAT
1 AGAATCAGAAT
118447418 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
29 1 0.01
30 71 0.76
31 21 0.23
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:118447572 original size:27 final size:26
Alignment explanation
Indices: 118447535--118447600 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
118447525 AGCATGGCTG
*
118447535 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* **
118447561 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
118447588 CCAGAATCAGATA
1 CCAGAA-CAGATA
118447601 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:118447605 original size:27 final size:27
Alignment explanation
Indices: 118447554--118447606 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
118447544 ATATCGTGAC
* *
118447554 AGAGTCACCAGATACAGATATTGTGGT
1 AGAGCCACCAGATACAGATAATGTGGT
118447581 AGAGCCACCAGA-ATCAGATAATGTGG
1 AGAGCCACCAGATA-CAGATAATGTGG
118447607 CAAACCCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGT
Found at i:118447615 original size:27 final size:27
Alignment explanation
Indices: 118447559--118447616 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
118447549 GTGACAGAGT
* * * *
118447559 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
118447586 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
118447613 CACC
1 CACC
118447617 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:118447958 original size:27 final size:26
Alignment explanation
Indices: 118447919--118448001 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
118447909 TCGATCGGTC
* *
118447919 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
118447945 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
118447972 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
118447999 AAC
1 AAC
118448002 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:118448395 original size:27 final size:27
Alignment explanation
Indices: 118448200--118448387 Score: 250
Period size: 27 Copynumber: 7.0 Consensus size: 27
118448190 GGGGCAAAAT
* * ** *
118448200 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
118448227 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
118448254 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
118448281 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
118448308 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
118448335 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
118448362 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
118448388 TAGTAATTTC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:118448437 original size:53 final size:53
Alignment explanation
Indices: 118448388--118448555 Score: 241
Period size: 53 Copynumber: 3.2 Consensus size: 53
118448378 AGGGGTATTT
* *
118448388 TAGTAATTTCACAATTGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTTTACAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
* *
118448441 CAGTAATTTTACAAATTGAGGGTAAAA-CGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTTTAC-AATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
*
118448494 TAGTAATTCTGTA-AATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATT-T-TACAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
*
118448548 TGGTAATT
1 TAGTAATT
118448556 CTGTAAATCG
Statistics
Matches: 104, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
53 55 0.53
54 47 0.45
55 2 0.02
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (53 bp):
TAGTAATTTTACAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:118448439 original size:27 final size:27
Alignment explanation
Indices: 118448404--118448565 Score: 227
Period size: 27 Copynumber: 6.0 Consensus size: 27
118448394 TTTCACAATT
118448404 GAGGGTAAAATAGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
* * * ** *
118448431 AAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAATAGTAATTCTGTAAATC
*
118448458 GAGGGTAAAA-CGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
*
118448484 GAGGGTAAAATAGTAATTCTGTAAATT
1 GAGGGTAAAATAGTAATTCTGTAAATC
*
118448511 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
*
118448538 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTGTAAATC
118448565 G
1 G
118448566 GGAGTACTTT
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 21 0.18
27 97 0.82
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAATAGTAATTCTGTAAATC
Found at i:118448527 original size:80 final size:81
Alignment explanation
Indices: 118448404--118448565 Score: 236
Period size: 80 Copynumber: 2.0 Consensus size: 81
118448394 TTTCACAATT
* *
118448404 GAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTTTACAAATTGAGGGTAAAA-
1 GAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTACAAATCGAGGGTAAAAT
118448468 CGTAATTCTGTAAATC
66 CGTAATTCTGTAAATC
** ** **
118448484 GAGGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAT
1 GAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTACAAATCGAGGGTAAAAT
*
118448549 GGTAATTCTGTAAATC
66 CGTAATTCTGTAAATC
118448565 G
1 G
118448566 GGAGTACTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 56 0.78
81 16 0.22
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
GAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTACAAATCGAGGGTAAAAT
CGTAATTCTGTAAATC
Found at i:118454163 original size:11 final size:11
Alignment explanation
Indices: 118454147--118454177 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
118454137 TAGAAAAATT
118454147 TATTTTTATTA
1 TATTTTTATTA
118454158 TATTTTTATTA
1 TATTTTTATTA
118454169 TATTTTTAT
1 TATTTTTAT
118454178 GGTCTACAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTTTTATTA
Found at i:118464604 original size:80 final size:80
Alignment explanation
Indices: 118464520--118464668 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
118464510 TATGGTAACC
* * * *
118464520 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
118464584 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
118464600 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
118464665 CCGG
66 CCGG
118464669 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:118464610 original size:40 final size:38
Alignment explanation
Indices: 118464561--118464668 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
118464551 ATCACGATTT
*
118464561 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
118464601 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
118464641 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
118464669 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:118472723 original size:80 final size:80
Alignment explanation
Indices: 118472639--118472787 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
118472629 TATGGTAACC
* * * *
118472639 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
118472703 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
118472719 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
118472784 CCGG
66 CCGG
118472788 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:118472729 original size:40 final size:38
Alignment explanation
Indices: 118472680--118472787 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
118472670 ATCACGATTT
*
118472680 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
118472720 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
118472760 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
118472788 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:118475567 original size:28 final size:28
Alignment explanation
Indices: 118475519--118475587 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
118475509 ATTTAAACCC
*
118475519 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
118475546 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
118475574 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
118475588 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:118481115 original size:83 final size:79
Alignment explanation
Indices: 118480914--118481131 Score: 274
Period size: 83 Copynumber: 2.7 Consensus size: 79
118480904 AAACCAAGTA
* * * * * *
118480914 CCTTCGGGATTTAGCCAGATATCGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
118480979 AACTCGCACACATG
66 AACTCGCACAAATG
* * * * *
118480993 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
118481058 TAACTACTAGCACAAATG
65 TAACT-C--GCACAAATG
*
118481076 CCTTCGGGACTTAGCTCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGC-CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCC
118481132 AAGATATCAT
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 12 0.10
80 46 0.39
81 1 0.01
82 1 0.01
83 57 0.49
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:118481138 original size:40 final size:40
Alignment explanation
Indices: 118480914--118481131 Score: 276
Period size: 40 Copynumber: 5.4 Consensus size: 40
118480904 AAACCAAGTA
* * * *
118480914 CCTTCGGGATTTAG-CCAGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
118480953 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
118480993 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
118481033 CCTTCGAGACTTAGCCCGGGTATAGTAACTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-C--GCACAAATG
* *
118481076 CCTTCGGGACTTAGCTCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
118481116 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
118481132 AAGATATCAT
Statistics
Matches: 152, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 104 0.68
43 36 0.24
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:118490043 original size:40 final size:40
Alignment explanation
Indices: 118489983--118490203 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
118489973 CATTTGAATG
118489983 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
118490023 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
118490063 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
118490103 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
118490143 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
118490183 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
118490204 AAACTTGGGT
Statistics
Matches: 165, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 152 0.92
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:118491946 original size:28 final size:28
Alignment explanation
Indices: 118491900--118491996 Score: 178
Period size: 28 Copynumber: 3.5 Consensus size: 28
118491890 TTTAAAACCC
*
118491900 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118491927 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118491955 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118491983 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
118491997 TGATCTACGC
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 7 0.10
28 61 0.90
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:118492649 original size:27 final size:27
Alignment explanation
Indices: 118492617--118492669 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
118492607 GGGGCAAAAT
118492617 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
118492644 GGTAATTTTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
118492670 TAGTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:118492675 original size:27 final size:28
Alignment explanation
Indices: 118492632--118492816 Score: 177
Period size: 27 Copynumber: 6.8 Consensus size: 28
118492622 TTCTACCCTA
** **
118492632 CAAGGGTATTTCGGTAATTTTACCCTA-
1 CAAGGGTATTTTAGTAATTTTACCAAAC
* *
118492659 CAGGGGTATTTTAGTAATTTT-GCAAAC
1 CAAGGGTATTTTAGTAATTTTACCAAAC
* * *
118492686 CATGGGTATTTTGGTAATTTTA-TAAAC
1 CAAGGGTATTTTAGTAATTTTACCAAAC
118492713 CAAGGGTATTTTAGTAATTTTA-CAAAC
1 CAAGGGTATTTTAGTAATTTTACCAAAC
* * **
118492740 CAGGGGTATTTTTGTAATTTT-GTAAAC
1 CAAGGGTATTTTAGTAATTTTACCAAAC
118492767 CAAGGGTATTTTAGTAATTTTA-CAAAC
1 CAAGGGTATTTTAGTAATTTTACCAAAC
* *
118492794 C-AGAGGTATTTTGGTGATTTTAC
1 CAAG-GGTATTTTAGTAATTTTAC
118492817 AAGTTGAGGG
Statistics
Matches: 132, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.03
27 128 0.97
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (28 bp):
CAAGGGTATTTTAGTAATTTTACCAAAC
Found at i:118492693 original size:54 final size:51
Alignment explanation
Indices: 118492634--118492816 Score: 199
Period size: 54 Copynumber: 3.4 Consensus size: 51
118492624 CTACCCTACA
* *
118492634 AGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTGCAAACC
1 AGGGTATTTTGGTAATTTTACCC-ACA-GGGTATTTTAGTAATTTTACAAACC
*
118492687 ATGGGTATTTTGGTAATTTTATAAACCA-AGGGTATTTTAGTAATTTTACAAACC
1 A-GGGTATTTTGGTAA-TTT-T-ACCCACAGGGTATTTTAGTAATTTTACAAACC
* *
118492741 AGGGGTATTTTTGTAATTTTGTAAACCA-AGGGTATTTTAGTAATTTTACAAACC
1 A-GGGTATTTTGGTAA-TTT-T-ACCCACAGGGTATTTTAGTAATTTTACAAACC
*
118492795 AGAGGTATTTTGGTGATTTTAC
1 AG-GGTATTTTGGTAATTTTAC
118492817 AAGTTGAGGG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 5 0.04
54 100 0.86
55 4 0.03
56 2 0.02
57 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (51 bp):
AGGGTATTTTGGTAATTTTACCCACAGGGTATTTTAGTAATTTTACAAACC
Found at i:118492751 original size:81 final size:80
Alignment explanation
Indices: 118492632--118492818 Score: 250
Period size: 81 Copynumber: 2.3 Consensus size: 80
118492622 TTCTACCCTA
* ** *
118492632 CAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTGCAAACCATGGGTATTT
1 CAAGGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTTAGTAATTTTGCAAACCAAGGGTATTT
* *
118492697 TGGTAATTTTATAAAC
65 TAGTAATTTTACAAAC
* * *
118492713 CAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTGTAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTAGTAATTTTGCAAACCAAGGGTATTT
118492778 TAGTAATTTTACAAAC
65 TAGTAATTTTACAAAC
*
118492794 C-AGAGGTATTTTGGTGATTTTACAA
1 CAAG-GGTATTTTGGTAATTTTACAA
118492819 GTTGAGGGCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 4 0.04
81 89 0.96
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTT
AGTAATTTTACAAAC
Found at i:118492817 original size:27 final size:27
Alignment explanation
Indices: 118492663--118492818 Score: 183
Period size: 27 Copynumber: 5.8 Consensus size: 27
118492653 ACCCTACAGG
*
118492663 GGTATTTTAGTAATTTTGCAAACCATG-
1 GGTATTTTAGTAATTTTACAAACCA-GA
* *
118492690 GGTATTTTGGTAATTTTATAAACCA-A
1 GGTATTTTAGTAATTTTACAAACCAGA
*
118492716 GGGTATTTTAGTAATTTTACAAACCAGG
1 -GGTATTTTAGTAATTTTACAAACCAGA
* **
118492744 GGTATTTTTGTAATTTTGTAAACCA-A
1 GGTATTTTAGTAATTTTACAAACCAGA
118492770 GGGTATTTTAGTAATTTTACAAACCAGA
1 -GGTATTTTAGTAATTTTACAAACCAGA
* *
118492798 GGTATTTTGGTGATTTTACAA
1 GGTATTTTAGTAATTTTACAA
118492819 GTTGAGGGCA
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
27 108 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTACAAACCAGA
Found at i:118492839 original size:54 final size:53
Alignment explanation
Indices: 118492662--118492815 Score: 245
Period size: 54 Copynumber: 2.8 Consensus size: 53
118492652 TACCCTACAG
*
118492662 GGGTATTTTAGTAATTTTGCAAACCATGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTGGTAATTTTATAAACCAA
* *
118492716 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTGGTAATTTTATAAACCAA
*
118492770 GGGTATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTGATTTTA
1 GGGTATTTTAGTAATTTTACAAACCAG-GGTATTTTGGTAATTTTA
118492816 CAAGTTGAGG
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 91 0.99
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGTATTTTGGTAATTTTATAAACCAA
Found at i:118496091 original size:40 final size:40
Alignment explanation
Indices: 118496017--118496157 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
118496007 CCGCACCAAG
* * * * * *
118496017 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
118496057 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
118496097 GCCTTCGGGTCTT-GCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
118496136 GCCTTCGGGTCTTAACCCGGAT
1 GCCTTCGGGTCTTAGCCCGGAT
118496158 GTAATTTTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 33 0.39
40 52 0.61
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:118505628 original size:30 final size:29
Alignment explanation
Indices: 118505594--118505650 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
118505584 TTAACTCAAT
118505594 CTTTGGAAAAATTACAATTTTGCCCCTAAA
1 CTTT-GAAAAATTACAATTTTGCCCCTAAA
* * * *
118505624 CTTTGCATACTTACACTTTTGCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
118505651 GGCTCAGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (29 bp):
CTTTGAAAAATTACAATTTTGCCCCTAAA
Found at i:118510058 original size:30 final size:30
Alignment explanation
Indices: 118510024--118510084 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
118510014 TCCTTAACTC
118510024 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
118510054 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
118510084 A
1 A
118510085 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:118512458 original size:2 final size:2
Alignment explanation
Indices: 118512451--118512475 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
118512441 GAGACTAGTC
118512451 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
118512476 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:118514507 original size:30 final size:30
Alignment explanation
Indices: 118514473--118514533 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
118514463 TCCTTAACTC
118514473 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
118514503 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
118514533 A
1 A
118514534 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:118538104 original size:40 final size:40
Alignment explanation
Indices: 118538059--118538189 Score: 113
Period size: 40 Copynumber: 3.3 Consensus size: 40
118538049 TACACATTCA
*
118538059 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATT-CAGTAACTCGCACG
* * * *
118538099 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACATAACCCGGATTCAGTAACTCGCACG
* * ** * *
118538139 AAAGCCTTC-GGATCTTAGTCCGAATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CATAACCCGGATTCAGTAACTCGCACG
* *
118538179 TATGCCGTCGG
1 AATGCCTTCGG
118538190 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.04
40 68 0.92
41 3 0.04
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTCAGTAACTCGCACG
Found at i:118538190 original size:40 final size:40
Alignment explanation
Indices: 118538086--118538243 Score: 160
Period size: 40 Copynumber: 4.0 Consensus size: 40
118538076 GCCCGGTTAC
**
118538086 AGTAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTT
1 AGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATTT
* * * *
118538126 AGTAGCTCGCTCGAAAGCCTTCGGATCTTAGTCCGAATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
* *
118538166 AGTAACTCGCACGTATGCCGTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
* * * *
118538206 AGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGCCCGGAT
1 AGTAAC-TCGCACGAATGCCTTC-GGATCTTAGTCCGGAT
118538244 ATCATTCGAA
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 86 0.89
41 8 0.08
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
Found at i:118555643 original size:46 final size:46
Alignment explanation
Indices: 118555591--118555715 Score: 214
Period size: 46 Copynumber: 2.7 Consensus size: 46
118555581 GGTTCAGCAT
* *
118555591 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
118555637 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
118555683 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
118555716 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:118560971 original size:16 final size:18
Alignment explanation
Indices: 118560952--118560984 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
118560942 CATACAAATT
118560952 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
118560968 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
118560985 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:118562789 original size:39 final size:39
Alignment explanation
Indices: 118562668--118562806 Score: 172
Period size: 40 Copynumber: 3.5 Consensus size: 39
118562658 GGATATAACG
* **
118562668 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
118562708 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* *
118562748 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
118562787 ACTCGCACGAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
118562807 ATCCTAGTTC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 49 0.57
41 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:118570472 original size:40 final size:40
Alignment explanation
Indices: 118570435--118570620 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
118570425 GCTACTCGTT
*
118570435 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * * *
118570475 CAGATGCCTTCGTGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
118570515 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
118570555 CGAATGCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
118570596 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
118570621 CATCATTCGA
Statistics
Matches: 124, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 110 0.89
41 12 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:118570547 original size:80 final size:79
Alignment explanation
Indices: 118570412--118570619 Score: 205
Period size: 80 Copynumber: 2.6 Consensus size: 79
118570402 CCTTCGGAGT
*
118570412 TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC-
1 TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACG
118570476 AGATGCCTTCGTGAC
66 A-ATGCCTTCGTGAC
* * *
118570491 TTAACCCGGATTTAG-TAACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCG
1 TTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCG
118570553 CACGAATGCCTTCG-GATC
62 CACGAATGCCTTCGTGA-C
* * * * *
118570571 TTAGTCCGAATATAG-TCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 TTA-ACCGGATATAGCT-AC-TCGTACAAATGCCTTCGGGACATAGCCCGG
118570620 ACATCATTCG
Statistics
Matches: 109, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
79 10 0.09
80 86 0.79
81 13 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACG
AATGCCTTCGTGAC
Found at i:118573214 original size:28 final size:28
Alignment explanation
Indices: 118573145--118573245 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
118573135 GACAAGATTG
* * * *
118573145 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
118573175 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
118573203 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
118573232 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
118573246 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:118578435 original size:53 final size:53
Alignment explanation
Indices: 118578366--118578809 Score: 516
Period size: 53 Copynumber: 8.3 Consensus size: 53
118578356 AAAGTACTCC
*
118578366 CGATTTACAGAATTACCATTTTACCCTC-GATTTACAGAATTATCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTA-CGTTTTACCCT
** * *
118578419 CGATTTTTAAAATTACCGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTA-CGTTTTACCCT
*
118578472 CGATTTATAGAATTACCG-TTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTA-CGTTTTACCCT
* *
118578525 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATATTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTA-CGTTTTACCCT
*
118578579 CGATTTACAGAATTACCG-TTTACCCTC-GATTTACAGAATTACTATTTTACCCTT
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTAC-GTTTTACCC-T
* *
118578633 TGACTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTAC-TGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACGT-TTTACCCT
*
118578686 CGATTTACAGAATTACCGTTTTA-CCTCGATTTGTA-A-AATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTAC-GTTTTACCCT
* * * *
118578739 TGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTA-CGTTTTACCCT
*
118578793 CGATTTACAAAATTACC
1 CGATTTACAGAATTACC
118578810 AAAATTACCA
Statistics
Matches: 345, Mismatches: 25, Indels: 41
0.84 0.06 0.10
Matches are distributed among these distances:
50 2 0.01
51 4 0.01
52 36 0.10
53 163 0.47
54 114 0.33
55 25 0.07
56 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (53 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACGTTTTACCCT
Found at i:118578752 original size:27 final size:27
Alignment explanation
Indices: 118578366--118578809 Score: 539
Period size: 27 Copynumber: 16.6 Consensus size: 27
118578356 AAAGTACTCC
*
118578366 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
118578393 CGATTTACAGAATTATCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
118578419 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
118578446 CGATTTGTAAAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
118578472 CGATTTATAGAATTACCG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
118578498 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
118578525 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
118578552 C-AGTTTACAGAATTACCATATTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
118578579 CGATTTACAGAATTACCG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
118578605 CGATTTACAGAATTACTATTTTACCCTT
1 CGATTTACAGAATTACCGTTTTACCC-T
* *
118578633 TGACTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
118578660 C-AGTTTACAGAATTACTG-TTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
118578686 CGATTTACAGAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
118578712 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
118578739 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
118578766 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
118578793 CGATTTACAAAATTACC
1 CGATTTACAGAATTACC
118578810 AAAATTACCA
Statistics
Matches: 363, Mismatches: 39, Indels: 30
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.01
26 130 0.36
27 202 0.56
28 26 0.07
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:118581939 original size:537 final size:541
Alignment explanation
Indices: 118580689--118585175 Score: 8232
Period size: 539 Copynumber: 8.3 Consensus size: 541
118580679 GGGTGTTACA
*
118580689 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCAAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
* *
118580754 ATTAAACTTCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAGTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
* * *
118580819 TAAATGGTAGAAATAGGTAAATCATGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
118580884 GGCAAGAAC-GAACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
196 GGCAAGAACAG-ACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
118580948 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
260 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* * * *
118581013 AATTACTAAATTTTATCATACTACGTCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTTA
325 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
** *
118581078 CACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
390 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
118581143 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
455 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
118581208 CTTTTACAAATTAGTCCTTTTT
520 CTTTTACAAATTAGTCCTTTTT
*
118581230 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
*
118581295 ATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACC-TCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
118581359 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
118581424 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
196 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
118581489 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
261 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
118581554 ATTACTAAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
326 ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
*
118581618 ACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCA-TTTAAGCCTAGCCGAAC
391 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
*
118581682 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAAC
456 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
118581746 TTTTACAAATTAGTCCTTTTT
521 TTTTACAAATTAGTCCTTTTT
118581767 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
118581832 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
118581897 TAAATGGTAGAAAT-GGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
*
118581961 GGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
196 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
118582026 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACA-TTA
261 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
*
118582090 ATTACTAAATTTTATCATACTATGG-AAAAATTA-A-TTTTGCCCCTAAATTTTATCTTATTTAC
326 ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
118582152 ACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
391 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
118582216 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
456 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
118582281 TTTTACAAATTAGTCCTTTTT
521 TTTTACAAATTAGTCCTTTTT
*
118582302 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
* *
118582367 ATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTCCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
118582432 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
118582497 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
196 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
*
118582562 AAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
261 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
*
118582627 ATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
326 ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
118582692 ACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCA-TTTAAGCCTAGCCGAAC
391 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
118582755 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAAC
456 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
118582819 TTTTACAAATTAGTCCTTTTT
521 TTTTACAAATTAGTCCTTTTT
118582840 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
118582905 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA-ACCTTCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
118582969 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
118583034 GGCAAGAA-AGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
196 GGCAAGAACA-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
* *
118583098 AAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-TCTTTTA-TTTGTTTATTTAAACATTT
260 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
*
118583161 AACTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTA
325 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
* * *
118583225 CACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG-CGA
390 CACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
118583289 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
454 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATA
118583354 ACTTTTACAAATTAGTCCTTTTT
519 ACTTTTACAAATTAGTCCTTTTT
* *
118583377 AGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACA
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
118583442 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
* *
118583507 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
118583572 GGCAAGAAC-GAACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
196 GGCAAGAACAG-ACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTC
118583636 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
260 AAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTT
* *
118583701 AATTACT-AATTTTATCATACTACGGCAAAAATTACATTTTTGCCCCTAAATTTTATCTTATTTA
325 AATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTA
** *
118583765 CACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCC-AA
390 CACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAA
118583829 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
455 CCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAA
118583894 CTTTTACAAATTAGTCCTTTTT
520 CTTTTACAAATTAGTCCTTTTT
*
118583916 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
* *
118583981 ATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTCCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
118584046 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
*
118584111 GGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
196 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
*
118584176 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACATTTA
261 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
* * *
118584241 ATTACTAAATTTTATCATACTATGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTTTTTAC
326 ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
* *
118584306 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTTAATTTATTTTCACTTTAAGCCTAGCCGAAG
391 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
*
118584371 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAG
456 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
118584436 TTTTACAAATTAGTCCTTTTT
521 TTTTACAAATTAGTCCTTTTT
118584457 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACAT-CATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
*
118584521 ATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACC-TCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
118584585 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
* *
118584650 GGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCTATGGTGGTCTTCA
196 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
*
118584715 AAATTTCGGCCGAGGGGTTGAAGATGACTAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
261 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
118584780 ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
326 ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
118584845 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
391 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
* *
118584910 CACTTTCATAGCTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAAC
456 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
118584975 TTTTACAAATTAGTCCTTTTT
521 TTTTACAAATTAGTCCTTTTT
118584996 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
1 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
* *
118585061 ATTAAACATCAAAATACTCAAATTTATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAA
66 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
*
118585126 TAAATGGTATAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
131 TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
118585176 TGTAACACCC
Statistics
Matches: 3834, Mismatches: 86, Indels: 52
0.97 0.02 0.01
Matches are distributed among these distances:
533 27 0.01
534 117 0.03
535 270 0.07
536 301 0.08
537 689 0.18
538 418 0.11
539 1130 0.29
540 567 0.15
541 315 0.08
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.33
Consensus pattern (541 bp):
AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
TAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
ATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAAC
CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
TTTTACAAATTAGTCCTTTTT
Found at i:118586194 original size:24 final size:24
Alignment explanation
Indices: 118586156--118586236 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
118586146 CTGGAGGACT
* *
118586156 AGCCTCTTTTAATAACTAGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
118586181 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
118586205 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
118586228 AGCCCTTTT
1 AGCCCTTTT
118586237 TCACTTCCTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.43
24 25 0.49
25 4 0.08
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:118586221 original size:23 final size:23
Alignment explanation
Indices: 118586163--118586235 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
118586153 ACTAGCCTCT
* *
118586163 TTTAATAACTAGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
118586186 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
118586210 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
118586233 TTT
1 TTT
118586236 TTCACTTCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 25 0.56
24 20 0.44
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:118586311 original size:20 final size:20
Alignment explanation
Indices: 118586286--118586352 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
118586276 TTATGATTAC
118586286 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
118586306 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
118586326 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
118586346 ACCATGT
1 ATCATGT
118586353 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:118586317 original size:11 final size:11
Alignment explanation
Indices: 118586286--118586341 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
118586276 TTATGATTAC
118586286 ATCATGTGCAT
1 ATCATGTGCAT
*
118586297 ATCA--TACAT
1 ATCATGTGCAT
118586306 ATCATGTGCAT
1 ATCATGTGCAT
*
118586317 ATCA--TACAT
1 ATCATGTGCAT
*
118586326 GTCATGTGCAT
1 ATCATGTGCAT
118586337 ATCAT
1 ATCAT
118586342 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:118588070 original size:23 final size:24
Alignment explanation
Indices: 118588012--118588150 Score: 175
Period size: 23 Copynumber: 6.0 Consensus size: 24
118588002 GCTTTATCAT
*
118588012 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
118588037 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
118588061 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
118588083 ATAAC-AGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
118588106 ATAA-TGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
118588128 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
118588151 GTACTTCCTC
Statistics
Matches: 102, Mismatches: 4, Indels: 17
0.83 0.03 0.14
Matches are distributed among these distances:
22 28 0.27
23 39 0.38
24 27 0.26
25 8 0.08
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:118588118 original size:45 final size:46
Alignment explanation
Indices: 118588033--118588151 Score: 181
Period size: 45 Copynumber: 2.6 Consensus size: 46
118588023 CCTAGCCTCT
*
118588033 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTGATAACTGGGCATAAGCCC
*
118588079 TTTAATAAC-AGGGCATAAGCCCTTTTGATAA-TGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCC
118588124 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
118588152 TACTTCCTCC
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
44 1 0.01
45 34 0.51
46 32 0.48
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCC
Found at i:118588222 original size:9 final size:9
Alignment explanation
Indices: 118588208--118588264 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
118588198 ATCTCATGTG
118588208 CATATCATA
1 CATATCATA
*
118588217 CATATCATGTG
1 CATATCA--TA
118588228 CATATCATA
1 CATATCATA
* *
118588237 CATGTCATGTG
1 CATATCA--TA
118588248 CATATCATA
1 CATATCATA
118588257 CATATCAT
1 CATATCAT
118588265 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:118588224 original size:20 final size:20
Alignment explanation
Indices: 118588196--118588266 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
118588186 GCATTTATGA
*
118588196 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
118588216 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
118588236 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
118588256 ACATATCATGT
1 ACATATCATGT
118588267 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:118588231 original size:11 final size:11
Alignment explanation
Indices: 118588201--118588255 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
118588191 TATGAACATC
118588201 TCATGTGCATA
1 TCATGTGCATA
*
118588212 TCA--TACATA
1 TCATGTGCATA
118588221 TCATGTGCATA
1 TCATGTGCATA
* *
118588232 TCA--TACATG
1 TCATGTGCATA
118588241 TCATGTGCATA
1 TCATGTGCATA
118588252 TCAT
1 TCAT
118588256 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:118595168 original size:28 final size:28
Alignment explanation
Indices: 118595122--118595190 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
118595112 TTTAAAACCC
*
118595122 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118595149 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118595177 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
118595191 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Done.