Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 385 of 770
Found at i:118596842 original size:20 final size:20
Alignment explanation
Indices: 118596819--118596856 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118596809 CACATCCAAA
*
118596819 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
118596839 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
118596857 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:118603179 original size:28 final size:28
Alignment explanation
Indices: 118603133--118603201 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
118603123 TTTAAAACCC
*
118603133 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118603160 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
118603188 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
118603202 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:118604852 original size:20 final size:20
Alignment explanation
Indices: 118604829--118604866 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118604819 CACATCCAAA
*
118604829 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
118604849 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
118604867 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:118607059 original size:23 final size:24
Alignment explanation
Indices: 118607001--118607165 Score: 241
Period size: 24 Copynumber: 7.0 Consensus size: 24
118606991 GCTTTATCAT
*
118607001 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
118607026 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
118607050 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
118607072 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
118607096 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
118607120 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
118607143 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
118607166 GCACTTCCTC
Statistics
Matches: 131, Mismatches: 3, Indels: 13
0.89 0.02 0.09
Matches are distributed among these distances:
22 10 0.08
23 40 0.31
24 73 0.56
25 8 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:118607117 original size:71 final size:70
Alignment explanation
Indices: 118607001--118607166 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 70
118606991 GCTTTATCAT
* *
118607001 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTAATAACT-GGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAGCCC-TTTTAATAACTGGGGCATAA
118607064 GCCCTTTA
63 GCCCTTTA
*
118607072 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGC
118607137 CCTTTA
65 CCTTTA
118607143 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
118607167 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
70 31 0.35
71 58 0.65
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCC
CTTTA
Found at i:118607166 original size:47 final size:48
Alignment explanation
Indices: 118607001--118607165 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
118606991 GCTTTATCAT
*
118607001 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTTA
*
118607050 ATAACT-GGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
118607096 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
118607143 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
118607166 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
46 26 0.24
47 49 0.45
48 27 0.25
49 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:118607241 original size:20 final size:20
Alignment explanation
Indices: 118607211--118607281 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
118607201 GCATTTATGA
*
118607211 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
118607231 AGATATCATGTACATATCAT
1 ACATATCATGTGCATATCAT
* *
118607251 ACATGTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
118607271 ACATATCATGT
1 ACATATCATGT
118607282 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:118609639 original size:27 final size:26
Alignment explanation
Indices: 118609605--118609699 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 26
118609595 GGGCATATTT
* *
118609605 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGT-TTACG
*
118609632 GTCATTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGG-TTTACG
*
118609659 GTCACTTTACCCTACAGGGACTTTACG
1 GTCACTTTACCCTACAGGG-GTTTACG
118609686 GTCACTTTACCCTA
1 GTCACTTTACCCTA
118609700 ATAGGGGTAT
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
27 62 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGGTTTACG
Found at i:118609781 original size:27 final size:27
Alignment explanation
Indices: 118609728--118609980 Score: 143
Period size: 27 Copynumber: 9.3 Consensus size: 27
118609718 TTTCATCCTA
* * ** *
118609728 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
118609755 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
118609782 CGATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * * *
118609811 CAAAGGTATTTTTGTAATTTTTTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
118609838 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
118609865 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
118609892 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* *
118609919 TAGGGGTATTTTGGTAATTTT-TCAAAC
1 CAAGGGTATTTTGGTAATTTTAT-AAAC
* * *
118609946 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
118609973 CGAGGGTA
1 CAAGGGTA
118609981 AAATAGTAAT
Statistics
Matches: 175, Mismatches: 43, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
26 2 0.01
27 144 0.82
28 17 0.10
29 12 0.07
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:118609900 original size:54 final size:54
Alignment explanation
Indices: 118609841--118609980 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
118609831 TTTAAATCAG
118609841 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-A
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * **
118609894 GTGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTTCAAACCAA
1 G-GGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
118609949 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
118609981 AAATAGTAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
53 2 0.03
54 69 0.93
55 3 0.04
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:118609952 original size:81 final size:81
Alignment explanation
Indices: 118609815--118609965 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
118609805 GAAAGTCAAA
* ** *** *
118609815 GGTATTTTTGTAATTTTTTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGT
118609880 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* *
118609896 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTTCAAACCAAGGGTATTTTAG
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAG
118609960 TAATTT
65 TAATTT
118609966 TGTAAATCGA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:118609987 original size:27 final size:27
Alignment explanation
Indices: 118609957--118610192 Score: 298
Period size: 27 Copynumber: 8.8 Consensus size: 27
118609947 AAGGGTATTT
*
118609957 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
118609984 TAGTAATTCTGTAAATTAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
118610011 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
118610038 CAGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
118610065 TGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
118610092 -CGATAATTATGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* *
118610119 TGGTAATTATGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
118610146 TGGTAATTATGTAAATC-AGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
118610172 TGGTAATTCTGTAAATC-AGGG
1 TAGTAATTCTGTAAATCGAGGG
118610193 GTACTTTGGT
Statistics
Matches: 189, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
26 30 0.16
27 158 0.84
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:118610231 original size:27 final size:27
Alignment explanation
Indices: 118610192--118610290 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 27
118610182 GTAAATCAGG
** *
118610192 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTACTTCAGTAATTTTACAAATCGAA
* *
118610219 GGTGCTTCAGTAATTTTACAAATCGAG
1 GGTACTTCAGTAATTTTACAAATCGAA
* * *
118610246 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTACTTCAGTAATTTTACAAATCGAA
* *
118610272 GGGTATTTCGGTAATTTTA
1 -GGTACTTCAGTAATTTTA
118610291 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.03
27 57 0.97
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTACTTCAGTAATTTTACAAATCGAA
Found at i:118610297 original size:28 final size:27
Alignment explanation
Indices: 118610224--118610299 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
118610214 TCGAAGGTGC
*
118610224 TTCAGTAATTTTACAAA-TCGAGGGTAT
1 TTCAGTAATTTTACAAACT-AAGGGTAT
*
118610251 TTCAGTATTTTTACAAACTAAGGGTAT
1 TTCAGTAATTTTACAAACTAAGGGTAT
* *
118610278 TTCGGTAATTTTAGTAAACTAA
1 TTCAGTAATTTTA-CAAACTAA
118610300 AGTATTCTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 34 0.81
28 8 0.19
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (27 bp):
TTCAGTAATTTTACAAACTAAGGGTAT
Found at i:118612901 original size:39 final size:39
Alignment explanation
Indices: 118612847--118612990 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
118612837 GAATGTTCGA
118612847 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
118612886 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
118612925 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
118612964 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
118612991 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:118612937 original size:78 final size:79
Alignment explanation
Indices: 118612848--118613030 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
118612838 AATGTTCGAG
118612848 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
118612912 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
118612926 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
118612991 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
118613005 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
118613031 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:118620920 original size:39 final size:39
Alignment explanation
Indices: 118620866--118621009 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
118620856 GAATGTTCGA
118620866 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
118620905 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
118620944 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
118620983 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
118621010 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:118620956 original size:78 final size:79
Alignment explanation
Indices: 118620867--118621049 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
118620857 AATGTTCGAG
118620867 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
118620931 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
118620945 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
118621010 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
118621024 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
118621050 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:118625239 original size:40 final size:40
Alignment explanation
Indices: 118625179--118625341 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
118625169 CGGGATTTAA
** * *
118625179 CCGGATATAAC-ACAAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
118625218 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
118625258 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
118625298 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
118625338 CCGG
1 CCGG
118625342 GTATCATTCA
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
39 9 0.09
40 92 0.88
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:118625301 original size:80 final size:79
Alignment explanation
Indices: 118625165--118625341 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 79
118625155 GAATCATGTA
* * * * **
118625165 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTTGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
118625229 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
118625243 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
118625307 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
118625323 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
118625342 GTATCATTCA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 11 0.14
79 11 0.14
80 57 0.70
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:118632414 original size:40 final size:40
Alignment explanation
Indices: 118632333--118632494 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 40
118632323 CGGGATTTAA
* * *
118632333 CCGGATATAA-CACAAGCACAATTGCCTT-GGGTCTTAAC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* ** *
118632371 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* *
118632411 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
118632451 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
118632491 CCGG
1 CCGG
118632495 GTATCATTCA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 7 0.07
39 17 0.17
40 77 0.75
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:118633692 original size:54 final size:54
Alignment explanation
Indices: 118633633--118633798 Score: 219
Period size: 54 Copynumber: 3.1 Consensus size: 54
118633623 AGCATGGCTG
* *
118633633 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGT-GCCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTAG-CAGAGCCA
118633687 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTAGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTAGCAGAGCCA
* * * * * * *
118633741 CCAGAGCAGATATATGTGGTAGAGCCACCAGATTAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTAGCAGAGCCA
118633795 CCAG
1 CCAG
118633799 GACGTTTCCT
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
54 82 0.81
55 19 0.19
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTAGCAGAGCCA
Found at i:118633778 original size:27 final size:27
Alignment explanation
Indices: 118633633--118633798 Score: 185
Period size: 27 Copynumber: 6.1 Consensus size: 27
118633623 AGCATGGCTG
* * *
118633633 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
118633659 CCAGATACAGATA-ATCGTGCCAGAGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
118633687 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
118633714 CCAGATCAGATA-ATCGTAGCAGAGCCA
1 CCAGATCAGATATAT-GTGGCAGAGCCA
* *
118633741 CCAGAGCAGATATATGTGGTAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* * *
118633768 CCAGATTAGATATTTGTGGCATAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
118633795 CCAG
1 CCAG
118633799 GACGTTTCCT
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
26 7 0.06
27 94 0.78
28 19 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:118643203 original size:41 final size:40
Alignment explanation
Indices: 118643076--118643220 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
118643066 CTCGCACAAG
* * * *
118643076 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
118643116 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
118643156 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
118643197 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
118643221 CATTCGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.03
40 60 0.65
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:118649674 original size:17 final size:18
Alignment explanation
Indices: 118649642--118649677 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
118649632 GCTAGACCCA
118649642 ACGCATTACGGTAGTCCT
1 ACGCATTACGGTAGTCCT
118649660 ACGCATTAC-GTAGTCCT
1 ACGCATTACGGTAGTCCT
118649677 A
1 A
118649678 GAATCGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (18 bp):
ACGCATTACGGTAGTCCT
Found at i:118656384 original size:29 final size:29
Alignment explanation
Indices: 118656352--118656424 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
118656342 CTTCGAGCTC
* *
118656352 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
118656381 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
118656410 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
118656425 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:118661128 original size:40 final size:39
Alignment explanation
Indices: 118661083--118661290 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
118661073 CGGAATACAA
*
118661083 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
118661123 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
118661163 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
118661203 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
118661243 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
118661283 CCGGATAT
1 CCGGATAT
118661291 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:118661223 original size:80 final size:80
Alignment explanation
Indices: 118661083--118661289 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
118661073 CGGAATACAA
* * *
118661083 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
118661147 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
118661163 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
118661227 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
118661243 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
118661290 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:118669129 original size:46 final size:46
Alignment explanation
Indices: 118669077--118669238 Score: 145
Period size: 46 Copynumber: 3.5 Consensus size: 46
118669067 GCCCATAAGC
*
118669077 GAACTCGGACTCAACTGAACAAGCTCGGGCATTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCACAAGT
** * *
118669123 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACATCTCAC----
1 GAACTCGGACTCAACTCAACAAGCTCGG--G-C-A-TTCGCATC-CACAAGT
* * *
118669170 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCACAAGT
**
118669216 GAACTCAAACTCAACTCAACAAG
1 GAACTCGGACTCAACTCAACAAG
118669239 TTCGAATTCC
Statistics
Matches: 92, Mismatches: 13, Indels: 22
0.72 0.10 0.17
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 1 0.01
46 44 0.48
47 26 0.28
48 1 0.01
49 1 0.01
50 5 0.05
51 5 0.05
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCACAAGT
Found at i:118669184 original size:47 final size:47
Alignment explanation
Indices: 118669123--118669295 Score: 167
Period size: 47 Copynumber: 3.7 Consensus size: 47
118669113 ATCCACAAGT
* *
118669123 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
118669170 GAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
* * * *
118669216 GAACTCAAACTCAACTCAACAAGTTCGAATTCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
118669263 GAACTCAGACTCAACTCAACGAGTTCGTATGCC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCC
118669296 CAAATATCCT
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 24 0.24
47 56 0.56
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:118669241 original size:93 final size:93
Alignment explanation
Indices: 118669076--118669285 Score: 321
Period size: 93 Copynumber: 2.3 Consensus size: 93
118669066 CGCCCATAAG
* * * **
118669076 CGAACTCGGACTCAACTGAACAAGCTCGGGCATTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAAACTCAACTCA
** *
118669141 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGAATGCCTAGTTACATCTCA
*
118669169 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAAACTCAACTCA
*
118669234 ACAAGTTCGAATTCCTAGTTACATCTCA
66 ACAAGTTCGAATGCCTAGTTACATCTCA
*
118669262 CGAACTCAGACTCAACTCAACGAG
1 CGAACTCGGACTCAACTCAACGAG
118669286 TTCGTATGCC
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 106 1.00
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCAAACTCAACTCA
ACAAGTTCGAATGCCTAGTTACATCTCA
Found at i:118669405 original size:38 final size:38
Alignment explanation
Indices: 118669354--118669427 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
118669344 TACTCCTTTT
*
118669354 CCATTCTCCTTGGAATACCAATGATGATACTTCGGTTA
1 CCATTCTCCTTGGAATACCAATGACGATACTTCGGTTA
*
118669392 CCATTCTCCTTGGAATTCCAATGACGATACTTCGGT
1 CCATTCTCCTTGGAATACCAATGACGATACTTCGGT
118669428 AGTCTTTCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (38 bp):
CCATTCTCCTTGGAATACCAATGACGATACTTCGGTTA
Found at i:118675191 original size:38 final size:37
Alignment explanation
Indices: 118675139--118675213 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
118675129 GGTTTAACTT
* *
118675139 TACAATCTCTCTTAAGATTTATGCTCCAAAATCTTAAGA
1 TACAATCTCCCTTAAGATTTATAC-CC-AAATCTTAAGA
* *
118675178 TACAA-CTCCCTTAAGGTTTCTACCCAAATCTTAAGA
1 TACAATCTCCCTTAAGATTTATACCCAAATCTTAAGA
118675214 ATTAACCCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 11 0.34
37 2 0.06
38 14 0.44
39 5 0.16
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (37 bp):
TACAATCTCCCTTAAGATTTATACCCAAATCTTAAGA
Found at i:118680711 original size:46 final size:45
Alignment explanation
Indices: 118680661--118680829 Score: 195
Period size: 44 Copynumber: 3.8 Consensus size: 45
118680651 TGGTTGAGCA
*
118680661 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * *
118680707 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-AACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAA--A--CG
*
118680752 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
* *
118680796 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
118680830 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
43 4 0.04
44 32 0.30
45 31 0.30
46 32 0.30
48 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:118681091 original size:19 final size:20
Alignment explanation
Indices: 118681054--118681091 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
118681044 ATAAGGTGGT
118681054 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
118681074 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
118681092 TGTGGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:118688149 original size:46 final size:46
Alignment explanation
Indices: 118688099--118688271 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
118688089 TGGTTGAGCA
*
118688099 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
118688145 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
118688192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
118688238 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
118688272 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:118688255 original size:93 final size:93
Alignment explanation
Indices: 118688096--118688266 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
118688086 GGATGGTTGA
* *
118688096 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
118688161 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
118688189 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
118688254 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
118688267 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:118688533 original size:19 final size:20
Alignment explanation
Indices: 118688496--118688533 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
118688486 ATAAGGTGGT
118688496 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
118688516 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
118688534 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:118691176 original size:40 final size:39
Alignment explanation
Indices: 118691131--118691260 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
118691121 CGGAATATAA
118691131 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
118691171 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
118691211 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
118691251 CCGGATATAA
1 CCGGATATAA
118691261 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:118691275 original size:40 final size:40
Alignment explanation
Indices: 118691147--118691297 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
118691137 ATAACCATGT
* * *
118691147 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
118691187 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
118691227 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
118691267 GCATAATTGTCTTCGGGAT-TTAG-CCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
118691298 CATTCAATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
39 10 0.11
40 77 0.86
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:118691281 original size:80 final size:79
Alignment explanation
Indices: 118691147--118691295 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 79
118691137 ATAACCATGT
*
118691147 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAG-
118691211 CCGGATGTAGCCACTA
64 CCGGATGTAGCCACTA
* * * * *
118691227 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
118691290 CCGGAT
64 CCGGAT
118691296 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
79 9 0.15
80 50 0.83
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
GGATGTAGCCACTA
Found at i:118695030 original size:27 final size:28
Alignment explanation
Indices: 118694968--118695065 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
118694958 ATAATAAGCC
118694968 CGCACACTTAGTGCT-TAACAGTCGAACT
1 CGCACACTTAGTGCTATAA-AGTCGAACT
*
118694996 CGCACACTTAGTGCTATAAA-TCAAACT
1 CGCACACTTAGTGCTATAAAGTCGAACT
* * *
118695023 CGCACACTTAGTGCTATACAATTTGAACC
1 CGCACACTTAGTGCTATA-AAGTCGAACT
118695052 CGCACACTTAGTGC
1 CGCACACTTAGTGC
118695066 CAATCTCATG
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
27 24 0.38
28 18 0.29
29 21 0.33
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAGTCGAACT
Found at i:118696801 original size:45 final size:42
Alignment explanation
Indices: 118696748--118696856 Score: 105
Period size: 41 Copynumber: 2.5 Consensus size: 42
118696738 GTAACACTAC
* *
118696748 GTCTGGGACGTCGGCATCGATATTTGTGGTTACTTGTAAGACCAT
1 GTCTGGGACGT-GGCATCGATATTT-TGATT-CATGTAAGACCAT
* * * *
118696793 GTCTGGGACATTAGTATCG-TA-TTTGATTCATGTAAGACCCT
1 GTCTGGGAC-GTGGCATCGATATTTTGATTCATGTAAGACCAT
118696834 GTCTGGGACAGTGGCATCGATAT
1 GTCTGGGAC-GTGGCATCGATAT
118696857 GAGATAACAT
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
41 27 0.52
42 6 0.12
43 2 0.04
44 2 0.04
45 14 0.27
46 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (42 bp):
GTCTGGGACGTGGCATCGATATTTTGATTCATGTAAGACCAT
Found at i:118696831 original size:41 final size:43
Alignment explanation
Indices: 118696782--118696893 Score: 120
Period size: 41 Copynumber: 2.7 Consensus size: 43
118696772 TGTGGTTACT
* ** *
118696782 TGTAAGACCATGTCTGGGACATTAGTATCG-TATTTGAT-TCA
1 TGTAAGACCATGTCTGGGACATTAGCATCGATATGAGATAACA
* * *
118696823 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGAGATAACA
1 TGTAAGACCATGTCTGGGACATTAGCATCGATATGAGATAACA
** *
118696866 TGTAAGACCACATCTGGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACATTAGCAT
118696894 TGTACGATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 26 0.45
42 6 0.10
43 26 0.45
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTAGCATCGATATGAGATAACA
Found at i:118704813 original size:45 final size:43
Alignment explanation
Indices: 118704751--118704924 Score: 144
Period size: 45 Copynumber: 4.0 Consensus size: 43
118704741 ACAGGATTTC
* *
118704751 TGATATG-TGTTCTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATATGTTGTT-ACGTGTAAGACCACGTCTGGGACATTGGCAT
* *
118704794 TGATATATGTTGTTACGTGTAAGGCCATGTCTGGGACATTGGCAT
1 TG--ATATGTTGTTACGTGTAAGACCACGTCTGGGACATTGGCAT
* *
118704839 TG-TAT-TTGATT-CGTGTAAGACC-CTGTATGGGACAATGGCAT
1 TGATATGTTG-TTACGTGTAAGACCAC-GTCTGGGACATTGGCAT
* * * * * *
118704880 CGATATGAT-ATAGCATGTAAGACCATGTCTGGGACGTTGGCAT
1 TGATATGTTGTTA-CGTGTAAGACCACGTCTGGGACATTGGCAT
118704923 TG
1 TG
118704925 TACGATATGT
Statistics
Matches: 104, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
41 30 0.29
42 8 0.08
43 28 0.27
45 34 0.33
46 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.33
Consensus pattern (43 bp):
TGATATGTTGTTACGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:118704913 original size:43 final size:41
Alignment explanation
Indices: 118704766--118704914 Score: 111
Period size: 41 Copynumber: 3.5 Consensus size: 41
118704756 TGTGTTCTCG
* ** * * *
118704766 TGTAAGACCACGTCTGGGACGTTGGCATTGATATATGTTGTTACG
1 TGTAAGACCATGTCTGGGACAATGGCATCG-TATATG--ATT-CA
* * * * *
118704811 TGTAAGGCCATGTCTGGGACATTGGCATTGTATTTGATTCG
1 TGTAAGACCATGTCTGGGACAATGGCATCGTATATGATTCA
* *
118704852 TGTAAGACCCTGTATGGGACAATGGCATCG-ATATGATATAGCA
1 TGTAAGACCATGTCTGGGACAATGGCATCGTATATGAT-T--CA
118704895 TGTAAGACCATGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
118704915 GTTGGCATTG
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
40 6 0.07
41 28 0.32
42 2 0.02
43 19 0.22
44 5 0.06
45 27 0.31
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACAATGGCATCGTATATGATTCA
Found at i:118708656 original size:5 final size:5
Alignment explanation
Indices: 118708648--118708686 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
118708638 TCTTTTTATT
*
118708648 TTTTA TTTTA CTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
118708687 CTCAAATTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:118714089 original size:26 final size:26
Alignment explanation
Indices: 118714060--118714126 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 26
118714050 ACTAAAATCG
* *
118714060 CAGCAAAGCTGCCAGCAATAATATCA
1 CAGCAAAGCTGCCAGCAACAATAACA
* ** *
118714086 CAGCAAAGCTTCCAATAACAATAACG
1 CAGCAAAGCTGCCAGCAACAATAACA
118714112 CAGCAAAGCTGCCAG
1 CAGCAAAGCTGCCAG
118714127 TATCAGGCTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.42, C:0.28, G:0.16, T:0.13
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGCAACAATAACA
Found at i:118719083 original size:40 final size:40
Alignment explanation
Indices: 118718975--118719184 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
118718965 CGGGATTTAA
* * * * *
118718975 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
118719015 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118719055 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118719095 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118719135 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
118719175 CCGGATATAT
1 CCGGATATAT
118719185 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:118729808 original size:1 final size:1
Alignment explanation
Indices: 118729802--118729828 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
118729792 TACTTCGCCT
118729802 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
118729829 GGAGAGAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:118731190 original size:44 final size:43
Alignment explanation
Indices: 118731051--118731194 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 43
118731041 AGATCTTATC
* * *
118731051 CCCCTAAGCAGTAGTGGTGTAGATCGAAGACGAAAAACCTTAAA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACG-AAGACCTTAAA
* * * * * * * *
118731095 CCCCTAAGCAGT-GGGGTAACAGGT-TAA-ATTGCAGATCTT-AT
1 CCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGACCTTAAA
118731136 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAGCCTTAAA
1 C-CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGA-CCTTAAA
118731181 CCCCTAAGCAGTAG
1 CCCCTAAGCAGTAG
118731195 GGTAACAGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 16
0.68 0.18 0.15
Matches are distributed among these distances:
41 2 0.03
42 22 0.30
43 15 0.21
44 32 0.44
45 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (43 bp):
CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGACCTTAAA
Found at i:118731203 original size:86 final size:85
Alignment explanation
Indices: 118731003--118731289 Score: 317
Period size: 86 Copynumber: 3.3 Consensus size: 85
118730993 GTCGTAAGGT
* *** *
118731003 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCACCCTAAGCAGTAGTGG
* * *
118731068 TGTAGATCGAAGACGAAAAAC
66 AGCAGATCGAAGACG-AAAGC
* *
118731089 CTTAAACCCCTAAGCAGTGGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCACCCTAAGCAGTAGTGG
118731154 AGCAGATCGAAGACGAAGAGC
66 AGCAGATCGAAGACGAA-AGC
** * **
118731175 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTTTACAGATC-TAAAACCCTAAGCAGTAG-G
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTT-AAATTGCAGATCTTATCACCCTAAGCAGTAGTG
* * * * * *
118731238 AAAACGGATCAAATATGACAAGC
65 -GAGCAGATCGAAGACGA-AAGC
*
118731261 CTTAATCCCCTAAGCAGTAGGGTAACAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGG
118731290 CTGTAAATCA
Statistics
Matches: 174, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
85 3 0.02
86 161 0.93
87 10 0.06
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (85 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCACCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAAGC
Found at i:118731862 original size:33 final size:34
Alignment explanation
Indices: 118731819--118731882 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
118731809 ACCCTAGCCG
118731819 CAGCAGGTGCT-CCCTCTGCTCCACCACCGACGC
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
* *
118731852 CAGCATGTGCTCCCCTCTGCTCCACTACCGA
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGA
118731883 TTTCTGCCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 10 0.36
34 18 0.64
ACGTcount: A:0.16, C:0.47, G:0.19, T:0.19
Consensus pattern (34 bp):
CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
Found at i:118733330 original size:20 final size:21
Alignment explanation
Indices: 118733286--118733341 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
118733276 CTATTACTTC
118733286 TTTATTATTTTA-TTACTATT
1 TTTATTATTTTATTTACTATT
* *
118733306 GTTATTATTTTATTTTC-ATT
1 TTTATTATTTTATTTACTATT
118733326 TTTATTTTATTTTATT
1 TTTA--TTATTTTATT
118733342 ATGCTGCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 17 0.57
21 3 0.10
22 10 0.33
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTATTTTATTTACTATT
Found at i:118740960 original size:16 final size:16
Alignment explanation
Indices: 118740939--118740975 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
118740929 AGGATGCAAT
*
118740939 AAAAATAAAATTAAAG
1 AAAAATAAAATAAAAG
*
118740955 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAG
118740971 AAAAA
1 AAAAA
118740976 AGTAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:118751103 original size:13 final size:13
Alignment explanation
Indices: 118751085--118751111 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
118751075 ACATATTATA
118751085 AACATTTTGTGTT
1 AACATTTTGTGTT
118751098 AACATTTTGTGTT
1 AACATTTTGTGTT
118751111 A
1 A
118751112 GAAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (13 bp):
AACATTTTGTGTT
Found at i:118752474 original size:40 final size:40
Alignment explanation
Indices: 118752419--118752624 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
118752409 GGACTAAGAT
* *
118752419 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
118752459 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
118752499 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
118752539 CCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
* *
118752579 CCGAAGGCATTTGTCCGAGTTG-TTATATCC-GGCTATA-TC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTA-AGTC
118752618 CCGAAGG
1 CCGAAGG
118752625 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.09
40 143 0.91
41 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:118757109 original size:15 final size:15
Alignment explanation
Indices: 118757089--118757119 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
118757079 ATAGTATGAC
118757089 ATTACAAGTATATAA
1 ATTACAAGTATATAA
118757104 ATTACAAGTATATAA
1 ATTACAAGTATATAA
118757119 A
1 A
118757120 AAAAAAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (15 bp):
ATTACAAGTATATAA
Found at i:118758154 original size:23 final size:23
Alignment explanation
Indices: 118758124--118758170 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
118758114 GGTTCGATTA
118758124 CATAATTTATTCACTATTTAATT
1 CATAATTTATTCACTATTTAATT
118758147 CATAATTTATTCACTATTTAATT
1 CATAATTTATTCACTATTTAATT
118758170 C
1 C
118758171 CATTCCTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (23 bp):
CATAATTTATTCACTATTTAATT
Found at i:118758170 original size:12 final size:11
Alignment explanation
Indices: 118758128--118758166 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
118758118 CGATTACATA
118758128 ATTTATTCACT
1 ATTTATTCACT
118758139 ATTTAATTCA-T
1 ATTT-ATTCACT
118758150 AATTTATTCACT
1 -ATTTATTCACT
118758162 ATTTA
1 ATTTA
118758167 ATTCCATTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (11 bp):
ATTTATTCACT
Found at i:118759008 original size:40 final size:40
Alignment explanation
Indices: 118758964--118759112 Score: 239
Period size: 40 Copynumber: 3.7 Consensus size: 40
118758954 GCTACTTGCT
118758964 CAAATGCCTAT-GGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCT-TCGGGACTTAGCCCGGTTATAGTAACTCGCA
118759004 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
118759044 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
118759084 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
118759113 CATCCGAATA
Statistics
Matches: 102, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:118761420 original size:40 final size:40
Alignment explanation
Indices: 118761228--118761413 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
118761218 TCGAATGATG
* * *
118761228 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
118761268 TCCGGACTAAGAT-CCGAAGGCATTTGTCCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
118761308 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
118761348 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
118761389 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
118761414 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:118761420 original size:80 final size:80
Alignment explanation
Indices: 118761228--118761446 Score: 252
Period size: 80 Copynumber: 2.8 Consensus size: 80
118761218 TCGAATGATG
* * **
118761228 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
118761292 TGTCCGAGTTACTAAA
65 TGTCCGAGTTACTAAA
* * *
118761308 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
*
118761372 TGTGCGAGTTACTATAA
65 TGTCCGAGTTACTA-AA
* **
118761389 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
118761447 TACGTGATTC
Statistics
Matches: 119, Mismatches: 14, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
79 16 0.13
80 94 0.79
81 9 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTCCGAGTTACTAAA
Found at i:118762798 original size:24 final size:24
Alignment explanation
Indices: 118762766--118762813 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
118762756 AGGAGTTTGA
118762766 TAGGTCATATGGCCACCTTTAGCT
1 TAGGTCATATGGCCACCTTTAGCT
118762790 TAGGTCATATGGCCACCTTTAGCT
1 TAGGTCATATGGCCACCTTTAGCT
118762814 CAAATACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (24 bp):
TAGGTCATATGGCCACCTTTAGCT
Found at i:118766627 original size:24 final size:24
Alignment explanation
Indices: 118766595--118766753 Score: 246
Period size: 24 Copynumber: 6.6 Consensus size: 24
118766585 TATCTCAAAT
118766595 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
118766619 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
118766643 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
118766667 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
118766691 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
118766715 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
118766739 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
118766754 ACATAATAAG
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 127 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:118766766 original size:48 final size:48
Alignment explanation
Indices: 118766619--118766775 Score: 167
Period size: 48 Copynumber: 3.3 Consensus size: 48
118766609 ATTTACTATG
* * *
118766619 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACT-AT-G
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATAA
* ** *
118766667 GCACTATGTGTGCGATTTACTATGGCACTAAGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
* * * *
118766715 GCACTACGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
118766763 GCACTATGTGTGC
1 GCACTATGTGTGC
118766776 CACATTCGGT
Statistics
Matches: 89, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
48 82 0.92
49 5 0.06
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:118766767 original size:72 final size:72
Alignment explanation
Indices: 118766595--118766775 Score: 202
Period size: 72 Copynumber: 2.5 Consensus size: 72
118766585 TATCTCAAAT
** * * * *
118766595 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATAGCACTACGTGTGCGATT
*
118766660 CACTATG
66 CACTATA
** * * * *
118766667 GCACTATGTGTGCGATTTACTATGGCACTAAGTGTGCGATTTACTATAGCACTACGTGTGCGATT
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATAGCACTACGTGTGCGATT
**
118766732 TGCTATA
66 CACTATA
*
118766739 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ACATAATATAGCACTATGTGTGC
118766776 CACATTCGGT
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
72 90 0.95
73 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (72 bp):
GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTCACTATAGCACTACGTGTGCGATT
CACTATA
Found at i:118774316 original size:24 final size:24
Alignment explanation
Indices: 118774284--118774464 Score: 229
Period size: 24 Copynumber: 7.5 Consensus size: 24
118774274 TATCTCAAAT
*
118774284 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
* *
118774308 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATA
*
118774332 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
*
118774356 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
* *
118774380 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATA
* *
118774404 GCTCTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATA
* ** *
118774428 GCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
118774452 GCACTATGTGTGC
1 GCACTATGTGTGC
118774465 CACATTCGGT
Statistics
Matches: 143, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
24 139 0.97
25 4 0.03
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:118777818 original size:19 final size:19
Alignment explanation
Indices: 118777794--118777831 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
118777784 TTTTGCAATT
118777794 TACAATTGCATCATGTACG
1 TACAATTGCATCATGTACG
118777813 TACAATTGCATCATGTACG
1 TACAATTGCATCATGTACG
118777832 GTCAACCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (19 bp):
TACAATTGCATCATGTACG
Found at i:118780962 original size:40 final size:40
Alignment explanation
Indices: 118780918--118781066 Score: 255
Period size: 40 Copynumber: 3.7 Consensus size: 40
118780908 GCTACTTGCT
118780918 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
118780958 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
118780998 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
118781038 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
118781067 CATCCGAATA
Statistics
Matches: 103, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:118788022 original size:28 final size:27
Alignment explanation
Indices: 118787959--118788028 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
118787949 ATAGTGAGTC
*
118787959 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
118787986 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
118788014 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
118788029 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:118796516 original size:49 final size:48
Alignment explanation
Indices: 118796481--118796631 Score: 257
Period size: 49 Copynumber: 3.1 Consensus size: 48
118796471 GGCCTAACTT
*
118796481 CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
118796529 CTTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCC
* *
118796579 CTTTTAATAACTAGGGCATAAGCCCTTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
118796627 CTTTT
1 CTTTT
118796632 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
48 28 0.29
49 46 0.47
50 24 0.24
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
Found at i:118796540 original size:25 final size:24
Alignment explanation
Indices: 118796481--118796631 Score: 257
Period size: 24 Copynumber: 6.2 Consensus size: 24
118796471 GGCCTAACTT
*
118796481 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
118796505 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
118796529 CTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCC
118796554 CTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCC
*
118796579 CTTTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
118796603 CTTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
118796627 CTTTT
1 CTTTT
118796632 GCACTTCCTC
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
24 73 0.60
25 49 0.40
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:118796702 original size:16 final size:16
Alignment explanation
Indices: 118796681--118796732 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
118796671 TTATGAATAC
118796681 ATCATGTGCATATCAT
1 ATCATGTGCATATCAT
118796697 ATCATGTGCATATCAT
1 ATCATGTGCATATCAT
*
118796713 A-CATGT-CATGTGCAT
1 ATCATGTGCATAT-CAT
118796728 ATCAT
1 ATCAT
118796733 ACATACCATG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 4 0.12
15 9 0.27
16 20 0.61
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (16 bp):
ATCATGTGCATATCAT
Found at i:118796743 original size:20 final size:18
Alignment explanation
Indices: 118796677--118796736 Score: 88
Period size: 20 Copynumber: 3.3 Consensus size: 18
118796667 GCATTTATGA
118796677 ATACATCATGTGCATATC
1 ATACATCATGTGCATATC
118796695 AT--ATCATGTGCATATC
1 ATACATCATGTGCATATC
118796711 ATACATGTCATGTGCATATC
1 ATACA--TCATGTGCATATC
118796731 ATACAT
1 ATACAT
118796737 ACCATGTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
16 16 0.42
18 4 0.11
20 18 0.47
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (18 bp):
ATACATCATGTGCATATC
Found at i:118796812 original size:25 final size:25
Alignment explanation
Indices: 118796780--118796827 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
118796770 ATATATAAAC
* *
118796780 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
118796805 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
118796828 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:118800457 original size:29 final size:29
Alignment explanation
Indices: 118800424--118800525 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
118800414 TGACGAGATC
118800424 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
118800453 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
118800482 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
118800511 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
118800526 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:118808312 original size:29 final size:29
Alignment explanation
Indices: 118808279--118808380 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
118808269 TGACGAGATC
118808279 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
118808308 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
118808337 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
118808366 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
118808381 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:118815675 original size:24 final size:24
Alignment explanation
Indices: 118815642--118815743 Score: 168
Period size: 24 Copynumber: 4.2 Consensus size: 24
118815632 GGCTTACCCT
* *
118815642 CTTTTAATAACTAGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
118815666 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
118815690 CTTTTTAATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAGCC
118815715 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
118815739 CTTTT
1 CTTTT
118815744 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
24 50 0.68
25 23 0.32
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:118815696 original size:49 final size:49
Alignment explanation
Indices: 118815638--118815743 Score: 176
Period size: 49 Copynumber: 2.1 Consensus size: 49
118815628 TGGAGGCTTA
*
118815638 CCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
1 CCCT-TTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
* *
118815688 CCCTTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAG
1 CCCTTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
118815737 CCCTTTT
1 CCCTTTT
118815744 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
49 49 0.92
50 4 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (49 bp):
CCCTTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
Found at i:118815819 original size:20 final size:20
Alignment explanation
Indices: 118815794--118815832 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
118815784 AATGAATACA
118815794 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
118815814 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
118815833 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:118815838 original size:20 final size:20
Alignment explanation
Indices: 118815795--118815839 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
118815785 ATGAATACAT
**
118815795 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
118815815 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
118815835 CATGT
1 CATGT
118815840 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:118825684 original size:46 final size:46
Alignment explanation
Indices: 118825634--118825809 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
118825624 TGGTTGAGCA
118825634 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
118825680 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
118825725 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
118825773 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
118825810 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:118825799 original size:93 final size:93
Alignment explanation
Indices: 118825631--118825802 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
118825621 GGATGGTTGA
* *
118825631 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
118825696 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
118825724 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
118825789 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
118825803 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:118830631 original size:2 final size:2
Alignment explanation
Indices: 118830624--118830648 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
118830614 TAAAAATTAA
118830624 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
118830649 AAACATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:118832567 original size:64 final size:64
Alignment explanation
Indices: 118832486--118832666 Score: 190
Period size: 64 Copynumber: 2.8 Consensus size: 64
118832476 AGACATTATG
* * * * * *
118832486 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
118832550 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACCATGTAGACAAGAGAGCTACGAGATAA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTA-CACCATGTAGACAAGAGAGCTACGAGATAA
* *
118832615 ACTG--GCTAGGTCACAT-GGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
118832667 CGAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
61 1 0.01
62 17 0.18
63 11 0.11
64 38 0.40
65 27 0.28
66 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:118835590 original size:41 final size:41
Alignment explanation
Indices: 118835545--118835622 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
118835535 GTTTGATTTT
*
118835545 ATTCACCGGCATTAA-GCCTGCTAGGCAT-AAAGCCCGATCAA
1 ATTCACCAGCA-TAAGGCCTGCTAGGC-TCAAAGCCCGATCAA
* *
118835586 ATTCACCAGCATAAGGCTTGCTATGCTCAAAGCCCGA
1 ATTCACCAGCATAAGGCCTGCTAGGCTCAAAGCCCGA
118835623 ATATCACTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 4 0.12
41 28 0.88
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (41 bp):
ATTCACCAGCATAAGGCCTGCTAGGCTCAAAGCCCGATCAA
Found at i:118836750 original size:43 final size:43
Alignment explanation
Indices: 118836649--118836808 Score: 202
Period size: 43 Copynumber: 3.8 Consensus size: 43
118836639 TGTTTTCATT
* * * * *
118836649 TATCGATGCCACTGTCCCAAACAAGGTCTTATACG-AATCGT-A
1 TATCGATGCCAATGTCCCAGACATGGTCTTACAAGTAATC-TCA
118836691 TA-CGATGCCAATGTCCCA-AGCATGGTCTTACAAGTAATCTCA
1 TATCGATGCCAATGTCCCAGA-CATGGTCTTACAAGTAATCTCA
* *
118836733 TATCGTTGCCAATGTCCCAGACATGATCTTACAAGTAATCTCA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACAAGTAATCTCA
*
118836776 TATCGTTGCCAATGTCCCAGACATGGTCTTACA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACA
118836809 CGAAATCACA
Statistics
Matches: 106, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
40 1 0.01
41 27 0.25
42 9 0.08
43 68 0.64
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
TATCGATGCCAATGTCCCAGACATGGTCTTACAAGTAATCTCA
Found at i:118844281 original size:18 final size:18
Alignment explanation
Indices: 118844240--118844281 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
118844230 GGGCCCTAGC
118844240 ATAGTGCAATAACATGAA
1 ATAGTGCAATAACATGAA
*
118844258 ACAGTGCAATAACA-GTAA
1 ATAGTGCAATAACATG-AA
118844276 ATAGTG
1 ATAGTG
118844282 TGCAAGTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (18 bp):
ATAGTGCAATAACATGAA
Found at i:118845877 original size:19 final size:19
Alignment explanation
Indices: 118845853--118845891 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
118845843 AGTGAAAAAG
118845853 TCCAAAAAAATGGTAACAA
1 TCCAAAAAAATGGTAACAA
118845872 TCCAAAAAAATGGTAACAA
1 TCCAAAAAAATGGTAACAA
118845891 T
1 T
118845892 GTAACATCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.15, G:0.10, T:0.18
Consensus pattern (19 bp):
TCCAAAAAAATGGTAACAA
Found at i:118847748 original size:20 final size:20
Alignment explanation
Indices: 118847688--118847748 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
118847678 ATAAATATGG
*
118847688 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
118847708 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
118847728 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
118847748 T
1 T
118847749 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:118847825 original size:24 final size:24
Alignment explanation
Indices: 118847798--118847964 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
118847788 GAGGAAGTGA
118847798 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
118847822 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
118847846 CAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
118847870 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
118847893 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
118847917 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
118847941 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
118847965 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:118847915 original size:71 final size:71
Alignment explanation
Indices: 118847798--118847965 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
118847788 GAGGAAGTGA
118847798 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCCAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCCAAAGGGCTTATGCCCC
118847863 AGTTATC
65 AGTTATC
** *
118847870 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCCAAAGGGCTTATGCCCCA
*
118847935 GTTATT
66 GTTATC
*
118847941 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
118847966 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCCAAAGGGCTTATGCCCCA
GTTATC
Found at i:118848191 original size:31 final size:31
Alignment explanation
Indices: 118848156--118848219 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
118848146 CGTTTACAGT
*
118848156 AAAGGCTTCGGCCCAGTACTATGAAATATGA
1 AAAGGCTTCAGCCCAGTACTATGAAATATGA
** *
118848187 AAAGGCTTCAGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCAGCCCAGTACTATGAAATATGA
118848218 AA
1 AA
118848220 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTACTATGAAATATGA
Found at i:118851429 original size:28 final size:27
Alignment explanation
Indices: 118851393--118851514 Score: 113
Period size: 27 Copynumber: 4.5 Consensus size: 27
118851383 AAACATATAT
*
118851393 CACATAGGGGCAAAATAGTCAGCTTAC
1 CACATAAGGGCAAAATAGTCAGCTTAC
* * **
118851420 CATATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCAGCTTAC
** *
118851447 CACATAAGGGC-AAATCAGTCAATTTTC
1 CACATAAGGGCAAAAT-AGTCAGCTTAC
** *
118851474 CACATAAGGGC-AAATCAGTCATTTTGC
1 CACATAAGGGCAAAAT-AGTCAGCTTAC
118851501 CACATAAGGGCAAA
1 CACATAAGGGCAAA
118851515 GCAGTCATTT
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 4 0.05
27 76 0.93
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCAGCTTAC
Found at i:118851458 original size:54 final size:55
Alignment explanation
Indices: 118851393--118851514 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 55
118851383 AAACATATAT
* * *
118851393 CACATAGGGGCAAAAT-AGTCAGCTTACCATATAAGGGAAAAAT-AGTCATTTTAC
1 CACATAAGGGCAAAATCAGTCAACTTACCACATAAGGG-AAAATCAGTCATTTTAC
* * * *
118851447 CACATAAGGGC-AAATCAGTCAATTTTCCACATAAGGGCAAATCAGTCATTTTGC
1 CACATAAGGGCAAAATCAGTCAACTTACCACATAAGGGAAAATCAGTCATTTTAC
118851501 CACATAAGGGCAAA
1 CACATAAGGGCAAA
118851515 GCAGTCATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
53 8 0.14
54 48 0.83
55 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (55 bp):
CACATAAGGGCAAAATCAGTCAACTTACCACATAAGGGAAAATCAGTCATTTTAC
Found at i:118851511 original size:27 final size:27
Alignment explanation
Indices: 118851423--118851551 Score: 156
Period size: 27 Copynumber: 4.8 Consensus size: 27
118851413 AGCTTACCAT
* *
118851423 ATAAGGGAAAAAT-AGTCATTTTACCAC
1 ATAAGGG-CAAATCAGTCATTTTGCCAC
118851450 ATAAGGGCAAATCAGTCAATTTT-CCAC
1 ATAAGGGCAAATCAGTC-ATTTTGCCAC
118851477 ATAAGGGCAAATCAGTCATTTTGCCAC
1 ATAAGGGCAAATCAGTCATTTTGCCAC
* **
118851504 ATAAGGGCAAAGCAGTCATTTTGTTAC
1 ATAAGGGCAAATCAGTCATTTTGCCAC
*
118851531 ATAAGGGTAAAAT-AGTCATTT
1 ATAAGGG-CAAATCAGTCATTT
118851552 CATCAAATTG
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
26 9 0.10
27 75 0.82
28 8 0.09
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (27 bp):
ATAAGGGCAAATCAGTCATTTTGCCAC
Found at i:118851520 original size:54 final size:54
Alignment explanation
Indices: 118851423--118851551 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
118851413 AGCTTACCAT
*
118851423 ATAAGGGAAAAATAGTCATTTTACCACATAAGGGCAAATCAGTCAATTTT-CCAC
1 ATAAGGGAAAAATAGTCATTTTACCACATAAGGGCAAAGCAGTC-ATTTTGCCAC
* * **
118851477 ATAAGGG-CAAATCAGTCATTTTGCCACATAAGGGCAAAGCAGTCATTTTGTTAC
1 ATAAGGGAAAAAT-AGTCATTTTACCACATAAGGGCAAAGCAGTCATTTTGCCAC
*
118851531 ATAAGGGTAAAATAGTCATTT
1 ATAAGGGAAAAATAGTCATTT
118851552 CATCAAATTG
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
53 9 0.14
54 53 0.80
55 4 0.06
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (54 bp):
ATAAGGGAAAAATAGTCATTTTACCACATAAGGGCAAAGCAGTCATTTTGCCAC
Found at i:118853282 original size:40 final size:40
Alignment explanation
Indices: 118853173--118853339 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
118853163 TCTTCAGAAT
* * *
118853173 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
118853212 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *
118853252 TTAGCCCGGATATAACAACTCGCACGAATGCTTTTGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
118853292 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
118853331 TTAGCCCGG
1 TTAGCCCGG
118853340 GTATCATTCA
Statistics
Matches: 102, Mismatches: 24, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
39 15 0.15
40 86 0.84
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:118857004 original size:39 final size:39
Alignment explanation
Indices: 118856950--118857076 Score: 202
Period size: 39 Copynumber: 3.2 Consensus size: 39
118856940 GAATTATATA
118856950 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
1 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
118856989 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
1 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
* * *
118857028 TAAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGC
1 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
118857066 TTAAAGTCCCG
1 -T-AAGTCCCG
118857077 CATGCTTTGT
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
38 22 0.27
39 53 0.64
40 8 0.10
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
Found at i:118857084 original size:40 final size:38
Alignment explanation
Indices: 118856950--118857093 Score: 189
Period size: 39 Copynumber: 3.7 Consensus size: 38
118856940 GAATTATATA
* *
118856950 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
1 TAAGTCCCGCAGGC-TTTGTGCTGGTGTTATATCCGGGC
* *
118856989 TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
1 TAAGTCCCGCAGGC-TTTGTGCTGGTGTTATATCCGGGC
*
118857028 TAAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGC
1 TAAGTCCCGCAGGCTTTGTGCTGGTGTTATATCCGGGC
* *
118857066 TTAAAGTCCCGCATGCTTTGTGGTGGTG
1 -T-AAGTCCCGCAGGCTTTGTGCTGGTG
118857094 ATTGAATTTG
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
38 22 0.23
39 53 0.55
40 22 0.23
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.31
Consensus pattern (38 bp):
TAAGTCCCGCAGGCTTTGTGCTGGTGTTATATCCGGGC
Found at i:118858877 original size:39 final size:39
Alignment explanation
Indices: 118858755--118858944 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
118858745 TATGGTAACC
* * * *
118858755 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
118858795 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
118858833 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
* *
118858872 TGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
118858911 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
118858945 CTCGAACATT
Statistics
Matches: 141, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
38 36 0.26
39 88 0.62
40 17 0.12
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:118862608 original size:80 final size:78
Alignment explanation
Indices: 118862444--118862649 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 78
118862434 AATTGAATGA
* * ** * * *
118862444 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT-CGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
118862508 TTGTGCTAGTGAC
66 TTGTGCAAGTGAC
* * *
118862521 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
118862586 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGT-G-AC
* *
118862603 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
118862650 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.01
79 34 0.31
80 70 0.65
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTGAC
Found at i:118862647 original size:40 final size:40
Alignment explanation
Indices: 118862443--118862649 Score: 197
Period size: 40 Copynumber: 5.2 Consensus size: 40
118862433 CAATTGAATG
* * ** **
118862443 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* **
118862483 ATAT-CGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGGTT
* * *
118862522 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
118862562 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
*
118862602 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
118862642 ATATCCGG
1 ATATCCGG
118862650 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 31 0.22
40 109 0.78
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:118877880 original size:73 final size:73
Alignment explanation
Indices: 118877759--118878375 Score: 439
Period size: 73 Copynumber: 8.2 Consensus size: 73
118877749 TATGTGGATG
*
118877759 TTTC-ATTTCTGTTTTCAAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTTCTGCTTTC-AAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
* *
118877823 GCCGATGTAT
64 GCTGAGGTAT
* * * ***
118877833 TTTCAAATTCTACTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACG-
1 TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
* *
118877897 TGTTGAGTCAC
66 TG-AG-GT-AT
** * * *
118877908 TTTCAATTTCTG-TTT----TTATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGTATGC
1 TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
*
118877968 TGAGGCAT
66 TGAGGTAT
* * * * *
118877976 TTTCAATTTATGTTTTTC-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGTCTCAGGGCACG
1 TTTCAATTTCTG-CTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
118878040 CTGAGGTAT
65 CTGAGGTAT
**** * *** *
118878049 TTTCAATTTCTGCTTTTCAATTTCTGCTTTCCAAAAAATCAACTCATATTGTGAGAAGTGAGTTG
1 TTTCAATTTCTGC-TTTCAA-----AAAAT-C---AACTC-A-T-ATTGCGAGAG--GTGAGTTG
*
118878114 AGCCTCAGGAG-ACGCTGAGGTGA-
51 AGCCTC-GGGGCACGCTGAGGT-AT
* * * *
118878137 TTTCAATTTATGTTTGTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGG
1 TTTCAATTTCTGCTT-TC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGG
118878202 CACGCTGAGGTAT
61 CACGCTGAGGTAT
* * *
118878215 TTTCGATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGCT-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
118878280 GCTGAGGT-T
64 GCTGAGGTAT
* * * **
118878289 ATTTCAATTTCTGTTTGTC-AAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTCGGCTCAC
1 -TTTCAATTTCTGCTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
*
118878353 ATGCTGAGGTCT
64 --GCTGAGGTAT
118878365 TTTCAATTTCT
1 TTTCAATTTCT
118878376 ATTTTTAATT
Statistics
Matches: 428, Mismatches: 74, Indels: 81
0.73 0.13 0.14
Matches are distributed among these distances:
68 12 0.03
69 1 0.00
70 41 0.10
71 2 0.00
72 1 0.00
73 127 0.30
74 27 0.06
75 106 0.25
76 1 0.00
77 3 0.01
78 36 0.08
79 2 0.00
80 7 0.02
81 1 0.00
82 1 0.00
83 7 0.02
84 1 0.00
85 1 0.00
86 7 0.02
87 3 0.01
88 36 0.08
89 3 0.01
92 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (73 bp):
TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
TGAGGTAT
Found at i:118877948 original size:70 final size:69
Alignment explanation
Indices: 118877854--118878027 Score: 206
Period size: 70 Copynumber: 2.4 Consensus size: 69
118877844 ACTTTCAAAA
* * * * *
118877854 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACGTGTTGAGTCACTTTCAATTTCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGTA--TGCTGAGGCACTTTCAATTTAT
118877919 GTTTTT
64 GTTTTT
* * *
118877925 -ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGTATGCTGAGGCATTTTCAATTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGTATGCTGAGGCACTTTCAATTTATGT
118877989 TTTT
66 TTTT
*
118877993 CAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAG
1 ----AATCAACTCATATTGCGAGAGGTGAGTTGAG
118878028 TCTCAGGGCA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
68 24 0.27
70 36 0.41
73 28 0.32
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (69 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCGTATGCTGAGGCACTTTCAATTTATGT
TTTT
Found at i:118878067 original size:14 final size:14
Alignment explanation
Indices: 118878048--118878078 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
118878038 CGCTGAGGTA
118878048 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
118878062 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
118878076 TTT
1 TTT
118878079 CCAAAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.19, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:118878111 original size:88 final size:86
Alignment explanation
Indices: 118877975--118878704 Score: 382
Period size: 75 Copynumber: 8.6 Consensus size: 86
118877965 TGCTGAGGCA
* * * *
118877975 TTTTCAATTTATGTTTTTC-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGTCTCAGGGCAC
1 TTTTCAATTT-TG-TTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCAC
118878039 GCTGAGGTATTTTCAATTTCTGC
64 GCTGAGGTATTTTCAATTTCTGC
* *
118878062 TTTTCAATTTCTGCTTTCCAAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGGAG-A
1 TTTTCAATTT-TG-TTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-GCA
*
118878126 CGCTGAGGTGA-TTTCAATTTATG-
63 CGCTGAGGT-ATTTTCAATTTCTGC
*
118878149 TTTGTCAA--------AAAAAAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAGGGCAC
1 TTT-TCAATTTTGTTTACAAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAGGGCAC
*
118878205 GCTGAGGTATTTTCGATTTCTGC
64 GCTGAGGTATTTTCAATTTCTGC
* * *
118878228 ---TC-------TTCA-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTCAATTTTGTTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGC
118878282 TGAGGT-TATTTCAATTTCTG-
66 TGAGGTAT-TTTCAATTTCTGC
*** *** * * * * * *
118878302 TTTGTCAA----AAAT-CAACTCAT-ATCGCGAGA--G-GTG-AGTTAAGCCTCG-G-CTCA---
1 TTT-TCAATTTTGTTTACAAAAAATCAACTC-ATATTGCGAGAAG-TGAG--TTGAGCCTCAGGG
* * *
118878352 CATGCTGAGGTCTTTTCAATTTCT-A
61 CACGCTGAGGTATTTTCAATTTCTGC
* * * * * *
118878377 TTTTTAATTTCTGTTTTTC-AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACAT
1 TTTTCAATTT-TG-TTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCAC
* *
118878441 GCTGAGGTAATTTCAATTTCTGT
64 GCTGAGGTATTTTCAATTTCTGC
* * *
118878464 TTTCTCCAATTTATGTTTTTC-AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGC
1 TTT-T-CAATTT-TG-TTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGC
*
118878528 ACGCTGAGGTATTTTCAATTTCTGT
62 ACGCTGAGGTATTTTCAATTTCTGC
* * * *
118878553 TTTTTAATTTTCGCTTTTCAAAAAAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
1 TTTTCAATTTT-G--TTT-----ACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
* * *
118878617 GGCTCACATGCTGAGGTATTTTCAATTTATGTT
58 GG-GCAC--GCTGAGGTATTTTCAATTTCTG-C
* * * *
118878650 TTTTCAATTTATATTTTTC-AAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTT-T-GTTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
118878705 GTGGGTTCAT
Statistics
Matches: 515, Mismatches: 68, Indels: 117
0.74 0.10 0.17
Matches are distributed among these distances:
74 4 0.01
75 87 0.17
76 3 0.01
77 5 0.01
78 69 0.13
79 2 0.00
80 11 0.02
81 12 0.02
82 2 0.00
83 9 0.02
84 1 0.00
86 23 0.04
87 28 0.05
88 68 0.13
89 81 0.16
90 34 0.07
93 2 0.00
94 39 0.08
96 24 0.05
97 10 0.02
98 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (86 bp):
TTTTCAATTTTGTTTACAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGC
TGAGGTATTTTCAATTTCTGC
Found at i:118878112 original size:161 final size:160
Alignment explanation
Indices: 118877925--118878652 Score: 702
Period size: 161 Copynumber: 4.4 Consensus size: 160
118877915 TTCTGTTTTT
* * **
118877925 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGTATGCTGAGGCATTTTCAATTTATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGCATTTTCAATTTATGTT
* *
118877990 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGTCTCAGGGCACGCTGAGGTATTTTCAA
66 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
* *
118878055 TTTCTGCTTTTCAATTTCTGCTTTCCAAAAA
131 TTTCTG-TTTTTAATTTCTGCTTTCAAAAAA
* * * * *
118878086 ATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGGAGACGCTGAGGTGA-TTTCAATTTATGT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGG-CATTTTCAATTTATGT
* *
118878150 TTGTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGGCACGCTGAGGTAT
65 TTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
*
118878215 TTTCGATTTCTG----------CT-C-TTCAAAAAA
125 TTTCAATTTCTGTTTTTAATTTCTGCTTTCAAAAAA
* * *
118878239 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-TTATTTCAATTTCTGT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGCAT-TTTCAATTTATGT
* * * * *
118878303 TTGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTC-GGCTCACATGCTGAGGTCTTT
65 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCAC--GCTGAGGTATTT
* *
118878367 TCAATTTCTATTTTTAATTTCTGTTTTTC--AAAA
127 TCAATTTCTGTTTTTAATTTCTG-CTTTCAAAAAA
*
118878400 ATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGG------C-A-------T
*
118878465 TTCTCCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
52 TT-T-CAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
118878530 GCTGAGGTATTTTCAATTTCTGTTTTTTAATTT-TCGCTTTTCAAAAAAAAAAA
115 GCTGAGGTATTTTCAATTTCTG-TTTTTAATTTCT-GC-TTTC-----AAAAAA
* *
118878583 ACCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAATTTAT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACATGCTGAGGCATTTTCAATTTAT
118878647 GTTTTT
63 GTTTTT
118878653 TCAATTTATA
Statistics
Matches: 470, Mismatches: 42, Indels: 102
0.77 0.07 0.17
Matches are distributed among these distances:
147 2 0.00
148 38 0.08
150 19 0.04
153 70 0.15
154 1 0.00
155 2 0.00
160 2 0.00
161 108 0.23
162 1 0.00
163 3 0.01
166 63 0.13
169 14 0.03
170 1 0.00
171 3 0.01
175 23 0.05
176 17 0.04
177 51 0.11
178 3 0.01
182 2 0.00
183 36 0.08
185 11 0.02
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (160 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGCATTTTCAATTTATGTT
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
TTTCTGTTTTTAATTTCTGCTTTCAAAAAA
Found at i:118878282 original size:153 final size:150
Alignment explanation
Indices: 118878062--118878551 Score: 493
Period size: 153 Copynumber: 3.1 Consensus size: 150
118878052 CAATTTCTGC
* * * *
118878062 TTTTCAATTTCTGCTTTCCAAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGGAGAC
1 TTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* * *
118878127 GCTGAGGTGATTTCAATTTATGTTTGTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTG
66 GCTGAGGTAATTTCAATTTCTGTTTGTC--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
118878192 AGCCTCAGGGCACGCTGAGGTA
129 AGCCTCAGGGCACGCTGAGGTA
*
118878214 TTTTCGATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
118878279 CGCTGAGGTTATTTCAATTTCTGTTTGTC---AAAAATCAACTCATATCGCGAGAGGTGAGTTAA
65 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
118878341 GCCTC-GGCTCACATGCTGAGGTC
130 GCCTCAGG-GCAC--GCTGAGGTA
** * *
118878364 TTTTCAATTTCTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGCTTTCAA------------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
118878429 GCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTCTCCAATTTATGTTTTTCAAAAATCAG
54 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTTGT-CAA---A--------AAAAATCAA
118878494 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
106 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
118878539 TTTTCAATTTCTG
1 TTTTCAATTTCTG
118878552 TTTTTTAATT
Statistics
Matches: 279, Mismatches: 26, Indels: 43
0.80 0.07 0.12
Matches are distributed among these distances:
147 2 0.01
148 38 0.14
149 4 0.01
150 20 0.07
152 14 0.05
153 72 0.26
161 64 0.23
162 4 0.01
163 1 0.00
175 20 0.07
177 38 0.14
178 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (150 bp):
TTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGGGCACGCTGAGGTA
Found at i:118878323 original size:314 final size:317
Alignment explanation
Indices: 118877925--118878551 Score: 818
Period size: 314 Copynumber: 2.0 Consensus size: 317
118877915 TTCTGTTTTT
* ** *
118877925 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGTATGCTGAGGCATTTTCAATTTATGTT
1 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCATTTTCAATTTATGTT
* * * * *
118877990 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGTCTCAGG-GCAC-GCTGAGGTATTTTC
66 TGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTC-GGCGCACAGCTGAGGTATTTTC
* * *
118878053 AATTTCTGCTTTTCAATTTCTGCTTTCCAAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCC
130 AATTTCT-ATTTTCAATTTCTGCTTTCC-AAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCC
* * *
118878118 TCAGGAGACGCTGAGGTGATTTCAATTTATG-TTTGT-CAA-A-AAAAAAATCAACTCATATTGC
193 TCAGGACACGCTGAGGTAATTTCAATTTATGTTTTCTCCAATATAAAAAAATCAACTCATATTGC
*
118878179 GAGAGATGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTGCTCTTCAAAAAA
258 GAGAGATGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTCTTCAAAAAA
* * *
118878239 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-TTATTTCAATTTCTGT
1 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCAT-TTTCAATTTATGT
* *
118878303 TTGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTT
65 TTGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTCGGCGCACA-GCTGAGGTATTTT
* * * *
118878368 CAATTTCTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCT
129 CAATTTCTATTTTCAATTTCTGCTTTCCAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCT
* * ** *
118878433 CAGGACATGCTGAGGTAATTTCAATTTCTGTTTTCTCCAATTTATGTTTTTCAAAAATCAGCTCA
194 CAGGACACGCTGAGGTAATTTCAATTTATGTTTTCTCCAA--TA-----TAAAAAAATCAACTCA
*
118878498 TATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
252 TATTGCGAGAGATGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
118878552 TTTTTTAATT
Statistics
Matches: 267, Mismatches: 31, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
313 3 0.01
314 156 0.58
315 20 0.07
316 23 0.09
319 1 0.00
325 64 0.24
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (317 bp):
ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCATTTTCAATTTATGTT
TGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTCGGCGCACAGCTGAGGTATTTTCA
ATTTCTATTTTCAATTTCTGCTTTCCAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCA
GGACACGCTGAGGTAATTTCAATTTATGTTTTCTCCAATATAAAAAAATCAACTCATATTGCGAG
AGATGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTCTTCAAAAAA
Found at i:118878499 original size:89 final size:87
Alignment explanation
Indices: 118878290--118878704 Score: 489
Period size: 89 Copynumber: 4.6 Consensus size: 87
118878280 GCTGAGGTTA
* * * *
118878290 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATCGCGAGAGGTGAGTTAAGCCTCGGCTCACAT
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACAT
* *
118878355 GCTGAGGTCTTTTCAATTTCTATT
64 GCTGAGGTATTTTCAATTTCTGTT
* *
118878379 TTT-AATTTCTGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGG-ACATG
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACATG
*
118878442 CTGAGGTAATTTCAATTTCTGTT
65 CTGAGGTATTTTCAATTTCTGTT
*
118878465 TTCTCCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TT-T-CAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCAC
118878530 --GCTGAGGTATTTTCAATTTCTGTT
62 ATGCTGAGGTATTTTCAATTTCTGTT
* * *
118878554 TTTTAATTT-TCGCTTTTCAAAAAAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TTTCAATTTAT-GTTTTTC-------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
118878618 GCTCACATGCTGAGGTATTTTCAATTTATGTTT
58 G--CACATGCTGAGGTATTTTCAATTTCTG-TT
* *
118878651 TTTCAATTTATATTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
118878705 GTGGGTTCAT
Statistics
Matches: 284, Mismatches: 22, Indels: 39
0.82 0.06 0.11
Matches are distributed among these distances:
86 28 0.10
87 12 0.04
88 49 0.17
89 79 0.28
90 36 0.13
91 2 0.01
92 2 0.01
94 39 0.14
96 21 0.07
97 15 0.05
98 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (87 bp):
TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACATGC
TGAGGTATTTTCAATTTCTGTT
Found at i:118878655 original size:15 final size:15
Alignment explanation
Indices: 118878635--118878667 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
118878625 TGCTGAGGTA
*
118878635 TTTTCAATTTATGTT
1 TTTTCAATTTATATT
118878650 TTTTCAATTTATATT
1 TTTTCAATTTATATT
118878665 TTT
1 TTT
118878668 CAAAGATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATATT
Found at i:118879814 original size:6 final size:6
Alignment explanation
Indices: 118879803--118879827 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
118879793 GTGCACGGTG
118879803 GCCGGC GCCGGC GCCGGC GCCGGC G
1 GCCGGC GCCGGC GCCGGC GCCGGC G
118879828 AGACTCCGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.48, G:0.52, T:0.00
Consensus pattern (6 bp):
GCCGGC
Found at i:118880521 original size:21 final size:21
Alignment explanation
Indices: 118880477--118880519 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
118880467 TACTTGGGTA
118880477 TTATATTATATATATATAACT
1 TTATATTATATATATATAACT
118880498 TTATATGT-TATATATAT-ACT
1 TTATAT-TATATATATATAACT
118880518 TT
1 TT
118880520 TAATATTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.24
21 15 0.71
22 1 0.05
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (21 bp):
TTATATTATATATATATAACT
Found at i:118880539 original size:29 final size:33
Alignment explanation
Indices: 118880497--118880570 Score: 84
Period size: 32 Copynumber: 2.3 Consensus size: 33
118880487 TATATATAAC
*
118880497 TTTATATGTTATAT-ATATACTTTTAATATTGTA
1 TTTATAT-ATATATCATATACTTTTAATATTGTA
* *
118880530 TTT-TATATATATCATATATTTTTAATGTTGTA
1 TTTATATATATATCATATACTTTTAATATTGTA
118880562 -TTAT-TATAT
1 TTTATATATAT
118880571 TTTAATATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
31 12 0.33
32 21 0.58
33 3 0.08
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (33 bp):
TTTATATATATATCATATACTTTTAATATTGTA
Found at i:118880553 original size:32 final size:32
Alignment explanation
Indices: 118880506--118880570 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
118880496 CTTTATATGT
118880506 TATATATATACTTTTAATATTGTATT-TTATA
1 TATATATATACTTTTAATATTGTATTATTATA
* *
118880537 TATATCATATATTTTTAATGTTGTATTATTATA
1 TATAT-ATATACTTTTAATATTGTATTATTATA
118880570 T
1 T
118880571 TTTAATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.17
32 19 0.63
33 6 0.20
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (32 bp):
TATATATATACTTTTAATATTGTATTATTATA
Found at i:118880591 original size:53 final size:52
Alignment explanation
Indices: 118880483--118880592 Score: 116
Period size: 53 Copynumber: 2.1 Consensus size: 52
118880473 GGTATTATAT
* * **
118880483 TATATATATATAACTTTATATGTTATATATATACTTTTAATATTGTATTTTA
1 TATATATATATAACTTTATATGTTATATATATACTTTTAATATTATACTACA
** *
118880535 TATATATCATATATTTTTA-ATGTTGTATTATTATA-TTTTAATATTATACTACA
1 TATATAT-ATATAACTTTATATGTTATA-TA-TATACTTTTAATATTATACTACA
118880588 TATAT
1 TATAT
118880593 TTTCATATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
52 14 0.29
53 30 0.62
54 4 0.08
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (52 bp):
TATATATATATAACTTTATATGTTATATATATACTTTTAATATTATACTACA
Found at i:118881853 original size:26 final size:26
Alignment explanation
Indices: 118881786--118881841 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
118881776 AATTTAAATG
118881786 AAAAATATATATATATAACAAAAAACT
1 AAAAA-ATATATATATAACAAAAAACT
118881813 AAAAAATATATATATAAC-AAAAACT
1 AAAAAATATATATATAACAAAAAACT
118881838 AAAA
1 AAAA
118881842 CAAATTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 11 0.38
26 13 0.45
27 5 0.17
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (26 bp):
AAAAAATATATATATAACAAAAAACT
Found at i:118888375 original size:26 final size:26
Alignment explanation
Indices: 118888338--118888421 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
118888328 TGATACAAAT
* *
118888338 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
118888364 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
118888390 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
118888416 TGATAA
1 TGATAA
118888422 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Done.