Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 387 of 770
Found at i:119213235 original size:80 final size:79
Alignment explanation
Indices: 119213075--119213251 Score: 320
Period size: 80 Copynumber: 2.2 Consensus size: 79
119213065 TCGATGATAA
*
119213075 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGCCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCGGGCTAAGCCCCGAAGGCATTTGT
119213140 GCGAGTTACTATAT
66 GCGAGTTACTATAT
*
119213154 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT-CGGGCTAAGCCCCGAAGGCATTTG
119213219 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
119213234 CCGGGCTAAGTCCC-AAGG
1 CCGGGCTAAGTCCCGAAGG
119213252 TACTTGGTTT
Statistics
Matches: 95, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
79 43 0.45
80 52 0.55
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCGGGCTAAGCCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:119221342 original size:39 final size:40
Alignment explanation
Indices: 119221283--119221495 Score: 307
Period size: 39 Copynumber: 5.5 Consensus size: 40
119221273 CGGATGATAA
* *
119221283 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
119221323 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
119221362 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
119221400 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
119221439 CCGGGCTAAGTCCC-AAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
119221478 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
119221496 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 6, Indels: 15
0.88 0.03 0.08
Matches are distributed among these distances:
37 19 0.12
38 30 0.19
39 78 0.49
40 33 0.21
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:119221427 original size:77 final size:78
Alignment explanation
Indices: 119221279--119221495 Score: 325
Period size: 77 Copynumber: 2.8 Consensus size: 78
119221269 TATTCGGATG
* *
119221279 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-TCCGGGCTAAGTCCGAAGGCA
119221343 TTTGTGCGAGTTACT
64 TTTGTGCGAGTTACT
*
119221358 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-CTATATCCGGGCTAAGTCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCGAAGGCATT
119221422 TGTGCGAGTTACT
66 TGTGCGAGTTACT
* *
119221435 ATAACCGGGCTAAGTCCC-AAGGCATTTGAGCGAGTAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCCGGGCTAAGT-CCGAAGG
119221496 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
76 16 0.12
77 62 0.48
78 16 0.12
79 34 0.27
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCGAAGGCATT
TGTGCGAGTTACT
Found at i:119227262 original size:6 final size:6
Alignment explanation
Indices: 119227251--119227329 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
119227241 GGGATCACTA
119227251 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
119227294 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
119227330 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:119227273 original size:20 final size:21
Alignment explanation
Indices: 119227247--119227292 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
119227237 AGCCGGGATC
119227247 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
119227268 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
119227288 ACTAA
1 ACTAA
119227293 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:119227317 original size:11 final size:11
Alignment explanation
Indices: 119227247--119227293 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
119227237 AGCCGGGATC
119227247 ACTAA-CTAAT
1 ACTAATCTAAT
119227257 ACTAATCTAAT
1 ACTAATCTAAT
119227268 -CTAA-CTAAT
1 ACTAATCTAAT
119227277 ACTAATCTAAT
1 ACTAATCTAAT
119227288 ACTAAT
1 ACTAAT
119227294 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:119227343 original size:14 final size:14
Alignment explanation
Indices: 119227326--119227353 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
119227316 CTCTAATACT
119227326 AATAGAATAGAAAA
1 AATAGAATAGAAAA
119227340 AATAGAATAGAAAA
1 AATAGAATAGAAAA
119227354 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:119235680 original size:18 final size:18
Alignment explanation
Indices: 119235601--119235694 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
119235591 CAAGGTCACG
*
119235601 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
119235619 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
119235637 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
119235655 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
119235673 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
119235688 ATCAATA
1 ATCAATA
119235695 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:119235681 original size:9 final size:9
Alignment explanation
Indices: 119235601--119235681 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
119235591 CAAGGTCACG
*
119235601 ATCAATAGC
1 ATCAATATC
* *
119235610 GTCACTATC
1 ATCAATATC
*
119235619 ATCAATAGC
1 ATCAATATC
* * *
119235628 GTCACTAGC
1 ATCAATATC
119235637 ATCAATATC
1 ATCAATATC
* * *
119235646 GTCACTAGC
1 ATCAATATC
119235655 ATCAATATC
1 ATCAATATC
* *
119235664 GTCACTATC
1 ATCAATATC
119235673 ATCAATATC
1 ATCAATATC
119235682 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:119238090 original size:21 final size:21
Alignment explanation
Indices: 119238060--119238148 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
119238050 CTCACAAAGA
* *
119238060 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
119238080 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
119238101 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
119238122 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
119238146 AAA
1 AAA
119238149 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:119238141 original size:24 final size:21
Alignment explanation
Indices: 119238060--119238128 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
119238050 CTCACAAAGA
* * *
119238060 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
119238080 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
119238101 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
119238122 AAAAAGA
1 AAAAAGA
119238129 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:119242314 original size:14 final size:14
Alignment explanation
Indices: 119242295--119242323 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
119242285 TACAATATAT
119242295 ATAAGAATTATACG
1 ATAAGAATTATACG
119242309 ATAAGAATTATACG
1 ATAAGAATTATACG
119242323 A
1 A
119242324 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:119248035 original size:16 final size:16
Alignment explanation
Indices: 119248010--119248042 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
119248000 ACGGTATTCT
*
119248010 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
119248026 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
119248042 A
1 A
119248043 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:119248540 original size:15 final size:15
Alignment explanation
Indices: 119248507--119248540 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
119248497 AGTTATGTCT
*
119248507 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
119248522 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
119248537 ATGT
1 ATGT
119248541 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:119249563 original size:19 final size:19
Alignment explanation
Indices: 119249541--119249580 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
119249531 TTAAACTTTT
* *
119249541 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
119249560 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
119249579 AT
1 AT
119249581 AAAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:119251286 original size:14 final size:14
Alignment explanation
Indices: 119251267--119251295 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
119251257 CTTTTTACTT
119251267 TGTTATATAGATTA
1 TGTTATATAGATTA
119251281 TGTTATATAGATTA
1 TGTTATATAGATTA
119251295 T
1 T
119251296 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:119251444 original size:21 final size:21
Alignment explanation
Indices: 119251420--119251459 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
119251410 TTTATCAGTA
*
119251420 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
119251441 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
119251460 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:119252059 original size:11 final size:11
Alignment explanation
Indices: 119252043--119252067 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
119252033 CTTTATATTT
119252043 ATATACAATAA
1 ATATACAATAA
119252054 ATATACAATAA
1 ATATACAATAA
119252065 ATA
1 ATA
119252068 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:119252762 original size:14 final size:15
Alignment explanation
Indices: 119252731--119252770 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
119252721 TATCTTTATC
119252731 TTATTTATATTCTATT
1 TTATTTAT-TTCTATT
119252747 TTATTTATTTCT-TT
1 TTATTTATTTCTATT
*
119252761 TTTTTTATTT
1 TTATTTATTT
119252771 ATCCATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.48
15 4 0.17
16 8 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TTATTTATTTCTATT
Found at i:119257455 original size:23 final size:23
Alignment explanation
Indices: 119257425--119257470 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
119257415 TATATTTTGA
119257425 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
119257448 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
119257471 CTAATATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTCGTATATAACTAGTCAATAT
Found at i:119258030 original size:14 final size:14
Alignment explanation
Indices: 119258011--119258038 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
119258001 TCAAGATAAA
119258011 GATAATATTGATCG
1 GATAATATTGATCG
119258025 GATAATATTGATCG
1 GATAATATTGATCG
119258039 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:119259239 original size:29 final size:29
Alignment explanation
Indices: 119259197--119259254 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
119259187 TATTAACCGA
119259197 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
119259226 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
119259255 AATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
TTCCATAGATCTATGTAGTTCCAAAAAAG
Found at i:119275325 original size:15 final size:15
Alignment explanation
Indices: 119275305--119275347 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
119275295 TATTAGAAAT
119275305 AAATAGATATTATAA
1 AAATAGATATTATAA
119275320 AAATAGA-A--AT--
1 AAATAGATATTATAA
119275330 AAATAGATATTATAA
1 AAATAGATATTATAA
119275345 AAA
1 AAA
119275348 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:119275326 original size:25 final size:25
Alignment explanation
Indices: 119275298--119275347 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
119275288 AAATATTTAT
119275298 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
119275323 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
119275348 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:119281038 original size:31 final size:33
Alignment explanation
Indices: 119280975--119281048 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
119280965 AAAATGAAAA
* *
119280975 TAAATTAATAATTTATTTTAATTATACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
*
119281008 TAAATTATTAATTT-TTCTATTTA-ACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
119281039 TAAA-TATTAA
1 TAAATTATTAA
119281049 ATAATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.16
31 12 0.32
32 7 0.18
33 13 0.34
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (33 bp):
TAAATTATTAATTTATTCTAATTATACTTAAAT
Found at i:119281054 original size:10 final size:10
Alignment explanation
Indices: 119281041--119281260 Score: 97
Period size: 11 Copynumber: 21.4 Consensus size: 10
119281031 ACTTAAATTA
*
119281041 AATATTAAAT
1 AATAATAAAT
119281051 AATAATAAAT
1 AATAATAAAT
** *
119281061 TCTAAATATACT
1 AAT-AATA-AAT
119281073 AA-ATATAAAT
1 AATA-ATAAAT
119281083 AATAACTAAAT
1 AATAA-TAAAT
119281094 AATAACTAAAT
1 AATAA-TAAAT
119281105 AGA-AAT--A-
1 A-ATAATAAAT
119281112 AA-AATAAAT
1 AATAATAAAT
119281121 AATAACTAAAT
1 AATAA-TAAAT
119281132 AGA-AATAAAAT
1 A-ATAAT-AAAT
119281143 AATAACTAAAT
1 AATAA-TAAAT
119281154 AGA-AATAAA-
1 A-ATAATAAAT
*
119281163 AAT-ATATAT
1 AATAATAAAT
* *
119281172 AAAAATATAT
1 AATAATAAAT
119281182 -ATAAT-AAT
1 AATAATAAAT
119281190 AATATATAAA-
1 AATA-ATAAAT
*
119281200 AATAATATAT
1 AATAATAAAT
*
119281210 AAATTATAAAT
1 -AATAATAAAT
119281221 AGATAATATAAT
1 A-ATAATA-AAT
119281233 AATAGATAGAAT
1 AATA-ATA-AAT
119281245 AATAAAATAAAT
1 AAT--AATAAAT
119281257 AATA
1 AATA
119281261 TAGAAATATA
Statistics
Matches: 165, Mismatches: 16, Indels: 58
0.69 0.07 0.24
Matches are distributed among these distances:
6 4 0.02
7 1 0.01
8 9 0.05
9 16 0.10
10 39 0.24
11 67 0.41
12 25 0.15
13 3 0.02
14 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:119281174 original size:22 final size:24
Alignment explanation
Indices: 119281090--119281170 Score: 114
Period size: 22 Copynumber: 3.4 Consensus size: 24
119281080 AATAATAACT
119281090 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
119281113 AAATAAATAATAACTAAATAGAAAT-A
1 AAAT--AT-ATAACTAAATAGAAATAA
119281139 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
119281162 AAATATATA
1 AAATATATA
119281171 TAAAAATATA
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
22 16 0.31
23 10 0.19
24 4 0.08
25 1 0.02
26 5 0.10
27 16 0.31
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (24 bp):
AAATATATAACTAAATAGAAATAA
Found at i:119281179 original size:12 final size:13
Alignment explanation
Indices: 119281158--119281212 Score: 87
Period size: 13 Copynumber: 4.4 Consensus size: 13
119281148 CTAAATAGAA
119281158 ATAAAAAT-ATAT
1 ATAAAAATAATAT
119281170 ATAAAAAT-ATAT
1 ATAAAAATAATAT
*
119281182 ATAATAATAATAT
1 ATAAAAATAATAT
119281195 ATAAAAATAATAT
1 ATAAAAATAATAT
119281208 ATAAA
1 ATAAA
119281213 TTATAAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 19 0.47
13 21 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAAAAATAATAT
Found at i:119281193 original size:15 final size:15
Alignment explanation
Indices: 119281164--119281260 Score: 78
Period size: 15 Copynumber: 6.7 Consensus size: 15
119281154 AGAAATAAAA
*
119281164 ATATAT-ATAAAAAT
1 ATATATAATAATAAT
119281178 ATATATAATAATAAT
1 ATATATAATAATAAT
119281193 ATATA-AA-AATAAT
1 ATATATAATAATAAT
*
119281206 ATATA-AATTATAA-
1 ATATATAATAATAAT
*
119281219 ATAGATAATATAATAAT
1 ATATAT-A-ATAATAAT
* * *
119281236 AGATAGAATAATAAA
1 ATATATAATAATAAT
*
119281251 ATAAATAATA
1 ATATATAATA
119281261 TAGAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
13 17 0.26
14 12 0.18
15 27 0.41
16 7 0.11
17 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAATAATAAT
Found at i:119281203 original size:43 final size:42
Alignment explanation
Indices: 119281107--119281270 Score: 118
Period size: 43 Copynumber: 3.7 Consensus size: 42
119281097 AACTAAATAG
* * * * *
119281107 AAATAAAAATAAATAATAA-CTAAATAGAAATAAAATAATAACT
1 AAATAAAAATAAA-AATAATATAAAAATATATATAATAATAA-T
*
119281150 AAATAGAAATAAAAATATATATAAAAATATATATAATAATAAT
1 AAATAAAAATAAAAATA-ATATAAAAATATATATAATAATAAT
* *
119281193 ATATAAAAATAATATATAAATTATAAATAGATA-ATATAATAATAGAT
1 AAATAAAAATAA-AAAT-AA-TATAAA-A-ATATATATAATAATA-AT
* *
119281240 AGAATAATAAA-ATAAATAATATAGAAATATA
1 A-AATAA-AAATAAAAATAATATAAAAATATA
119281271 GATTTATAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
42 4 0.04
43 27 0.28
44 23 0.24
45 12 0.12
46 14 0.14
47 9 0.09
48 5 0.05
49 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATAAAAATAAAAATAATATAAAAATATATATAATAATAAT
Found at i:119281203 original size:49 final size:50
Alignment explanation
Indices: 119281066--119281262 Score: 139
Period size: 49 Copynumber: 4.0 Consensus size: 50
119281056 TAAATTCTAA
* *
119281066 ATATACTAAATATAAATAATAACTAA-ATAATAACTAAATAGAAATAAAAATA-
1 ATATAATAAATATATATAATAA-TAATAT-ATAAC-AAATA-AAATAAAAATAT
* * *
119281118 A-ATAATAACTAAATAGAAATAA-AATA-ATAACTAAATAGAAATAAAAATAT
1 ATATAATAAATATATA-TAATAATAATATATAAC-AAATA-AAATAAAAATAT
* *
119281168 ATATAA-AAATATATATAATAATAATATATAA-AAATAATATATAAAT-T
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
* * * *
119281215 ATA-AATAGATA-ATATAATAAT-AGATAGAA-TAATAAAATAAATAATAT
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAA-AATAT
119281262 A
1 A
119281263 GAAATATAGA
Statistics
Matches: 120, Mismatches: 16, Indels: 23
0.75 0.10 0.14
Matches are distributed among these distances:
45 15 0.12
46 15 0.12
47 10 0.08
48 8 0.07
49 33 0.28
50 14 0.12
51 19 0.16
52 6 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (50 bp):
ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
Found at i:119281231 original size:20 final size:20
Alignment explanation
Indices: 119281206--119281309 Score: 62
Period size: 20 Copynumber: 5.4 Consensus size: 20
119281196 TAAAAATAAT
119281206 ATATAAATTATAAATAGATA
1 ATATAAATTATAAATAGATA
* *
119281226 ATAT-AATAATAGATAGAATA
1 ATATAAATTATAAATAG-ATA
*
119281246 ATA-AAATAAATAATATAGA-A
1 ATATAAAT-TATAA-ATAGATA
* *
119281266 ATATAGATTTATAAATCGA-A
1 ATATA-AATTATAAATAGATA
*
119281286 ATAT--ATTA-ATATA-ATA
1 ATATAAATTATAAATAGATA
119281302 ATATAAAT
1 ATATAAAT
119281310 ATTATTAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 20
0.69 0.09 0.21
Matches are distributed among these distances:
15 1 0.02
16 8 0.12
17 3 0.05
18 2 0.03
19 10 0.15
20 26 0.39
21 10 0.15
22 6 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (20 bp):
ATATAAATTATAAATAGATA
Found at i:119281267 original size:15 final size:14
Alignment explanation
Indices: 119281108--119281268 Score: 55
Period size: 13 Copynumber: 11.8 Consensus size: 14
119281098 ACTAAATAGA
119281108 AATA-AAAATAAAT
1 AATATAAAATAAAT
*
119281121 AATAACTAAATAGAAAT
1 AAT-A-TAAA-ATAAAT
* *
119281138 AA-A-ATAATAACT
1 AATATAAAATAAAT
119281150 AA-ATAGAAATAAA-
1 AATATA-AAATAAAT
119281163 AATATATATAA-AAAT
1 AATATA-A-AATAAAT
*
119281178 -ATATATAAT-AAT
1 AATATAAAATAAAT
*
119281190 AATATATAA-AAAT
1 AATATAAAATAAAT
119281203 AATAT---ATAAAT
1 AATATAAAATAAAT
*
119281214 --TAT-AAATAGAT
1 AATATAAAATAAAT
*
119281225 AATATAATAATAGATAG
1 AATATAA-AATA-A-AT
119281242 AATAATAAAATAAAT
1 AAT-ATAAAATAAAT
119281257 AATATAGAAATA
1 AATATA-AAATA
119281269 TAGATTTATA
Statistics
Matches: 113, Mismatches: 12, Indels: 44
0.67 0.07 0.26
Matches are distributed among these distances:
9 3 0.03
10 1 0.01
11 9 0.08
12 12 0.11
13 27 0.24
14 22 0.19
15 16 0.14
16 4 0.04
17 15 0.13
18 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (14 bp):
AATATAAAATAAAT
Found at i:119281315 original size:23 final size:23
Alignment explanation
Indices: 119281284--119281367 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 23
119281274 TTATAAATCG
119281284 AAATA-TATTAATATAATAATAT
1 AAATATTATTAATATAATAATAT
* *
119281306 AAATATTATTAATTACTTAATATTCT
1 AAATATTATTAA-TA--TAATAATAT
* * *
119281332 TAATATTAATAACA-AATAATAT
1 AAATATTATTAATATAATAATAT
*
119281354 AAATTAATATTAAT
1 AAA-TATTATTAAT
119281368 TGCTAATAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
22 13 0.28
23 13 0.28
24 2 0.04
25 1 0.02
26 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATTATTAATATAATAATAT
Found at i:119281375 original size:26 final size:26
Alignment explanation
Indices: 119281288--119281376 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
119281278 AAATCGAAAT
119281288 ATATTAA-TA-TAATAATATAAA-TA
1 ATATTAATTACTAATAATATAAATTA
* **
119281311 TTATTAATTACT--TAATAT-TCTTA
1 ATATTAATTACTAATAATATAAATTA
* *
119281334 ATATTAATAACAAATAATATAAATTA
1 ATATTAATTACTAATAATATAAATTA
*
119281360 ATATTAATTGCTAATAA
1 ATATTAATTACTAATAA
119281377 CTTGTAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
23 23 0.47
24 2 0.04
25 7 0.14
26 17 0.35
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATATTAATTACTAATAATATAAATTA
Found at i:119287034 original size:15 final size:15
Alignment explanation
Indices: 119287016--119287046 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
119287006 ATCTCTCATC
119287016 TATCTATCTATTTTT
1 TATCTATCTATTTTT
119287031 TATCTATCTATTTTT
1 TATCTATCTATTTTT
119287046 T
1 T
119287047 CTTTAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
TATCTATCTATTTTT
Found at i:119287748 original size:16 final size:17
Alignment explanation
Indices: 119287721--119287754 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
119287711 AAATGGATTT
119287721 AATAGAAATTAAATAGA
1 AATAGAAATTAAATAGA
119287738 AATAG-AATTAAATAGA
1 AATAGAAATTAAATAGA
119287754 A
1 A
119287755 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAAATTAAATAGA
Found at i:119288684 original size:15 final size:15
Alignment explanation
Indices: 119288655--119288716 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
119288645 GTAGAAAGCC
* *
119288655 TATTTTTTTTTCTAG
1 TATTTTATTTACTAG
119288670 TATTTTATTTACTAG
1 TATTTTATTTACTAG
**
119288685 CGTGTTTATTTACTAGCG
1 TAT-TTTATTTACTA--G
119288703 TA-TTTATTTACTAG
1 TATTTTATTTACTAG
119288717 CGTATTTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 22 0.58
18 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (15 bp):
TATTTTATTTACTAG
Found at i:119288694 original size:16 final size:16
Alignment explanation
Indices: 119288673--119288723 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
119288663 TTTCTAGTAT
*
119288673 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
119288689 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
119288705 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
119288721 TTT
1 TTT
119288724 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:119290074 original size:13 final size:14
Alignment explanation
Indices: 119290041--119290074 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
119290031 GCCCGGAGGC
*
119290041 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
119290055 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
119290069 TGAAAA
1 T-AAAA
119290075 GTTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:119291359 original size:9 final size:9
Alignment explanation
Indices: 119291345--119291432 Score: 64
Period size: 9 Copynumber: 10.3 Consensus size: 9
119291335 AGAAATAAAT
119291345 ATATATATA
1 ATATATATA
*
119291354 ATATATAAA
1 ATATATATA
119291363 ATA-ATATTA
1 ATATATA-TA
119291372 ATATATA-A
1 ATATATATA
119291380 ATATA-A-A
1 ATATATATA
119291387 A-ATATATA
1 ATATATATA
* *
119291395 AAATATTTA
1 ATATATATA
119291404 GATATA-A-A
1 -ATATATATA
* *
119291412 ATATTTAGA
1 ATATATATA
119291421 ATATATATA
1 ATATATATA
119291430 ATA
1 ATA
119291433 AAATAGATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
6 3 0.05
7 8 0.13
8 13 0.21
9 32 0.51
10 7 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (9 bp):
ATATATATA
Found at i:119291375 original size:25 final size:25
Alignment explanation
Indices: 119291347--119291451 Score: 82
Period size: 25 Copynumber: 4.3 Consensus size: 25
119291337 AAATAAATAT
119291347 ATATATAATATATAAAATAATATTA
1 ATATATAATATATAAAATAATATTA
119291372 ATATATAA-ATAT-AAA-AATATATA
1 ATATATAATATATAAAATAATAT-TA
* * *
119291395 AAATATTTAGATATAAAAT-AT-TTA
1 ATATA-TAATATATAAAATAATATTA
119291419 GA-ATAT-ATATAATAAAATAGATA-TA
1 -ATATATAATAT-ATAAAATA-ATATTA
119291444 ATATATAA
1 ATATATAA
119291452 ATAAATTGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 23
0.71 0.03 0.25
Matches are distributed among these distances:
22 8 0.12
23 17 0.26
24 12 0.18
25 22 0.34
26 6 0.09
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (25 bp):
ATATATAATATATAAAATAATATTA
Found at i:119291410 original size:15 final size:16
Alignment explanation
Indices: 119291390--119291425 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
119291380 ATATAAAAAT
119291390 ATATAAAATATTTAG-
1 ATATAAAATATTTAGA
119291405 ATATAAAATATTTAGA
1 ATATAAAATATTTAGA
119291421 ATATA
1 ATATA
119291426 TATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATAAAATATTTAGA
Found at i:119291424 original size:33 final size:34
Alignment explanation
Indices: 119291334--119291449 Score: 103
Period size: 34 Copynumber: 3.4 Consensus size: 34
119291324 ATACAAAAAA
* * *
119291334 TAGAAATAAATATATATATAATATATAAAATAATAT
1 TAGATATAAA-ATATTTAAAATATATAAAAT-ATAT
*
119291370 TA-ATATATAAATA-TAAAAATATATAAAATAT-T
1 TAGATATA-AAATATTTAAAATATATAAAATATAT
* * * *
119291402 TAGATATAAAATATTTAGAATATATATAATAAAA
1 TAGATATAAAATATTTAAAATATATAAAATATAT
*
119291436 TAGATATAATATAT
1 TAGATATAAAATAT
119291450 AAATAAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
32 8 0.12
33 21 0.32
34 26 0.39
35 7 0.11
36 4 0.06
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (34 bp):
TAGATATAAAATATTTAAAATATATAAAATATAT
Found at i:119291464 original size:22 final size:22
Alignment explanation
Indices: 119291331--119291475 Score: 89
Period size: 24 Copynumber: 6.2 Consensus size: 22
119291321 TGTATACAAA
*
119291331 AAATAGAAATAAATATATATATAAT
1 AAATA-AAATAGATATA-ATAT-AT
*
119291356 ATATAAAATA-ATATTAATATAT
1 AAATAAAATAGATA-TAATATAT
* * *
119291378 AAATATAAAAATATATAAAATATTT
1 -AA-AT-AAAATAGATATAATATAT
** *
119291403 AGATATAAAATATTTAGAATATAT
1 A-A-ATAAAATAGATATAATATAT
119291427 ATAATAAAATAGATATAATATAT
1 A-AATAAAATAGATATAATATAT
*
119291450 AAAT-AAATTGAATATAATAT-T
1 AAATAAAATAG-ATATAATATAT
119291471 AAATA
1 AAATA
119291476 GATAAATAAA
Statistics
Matches: 100, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
21 10 0.10
22 14 0.14
23 26 0.26
24 27 0.27
25 20 0.20
26 3 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
AAATAAAATAGATATAATATAT
Found at i:119291881 original size:13 final size:13
Alignment explanation
Indices: 119291863--119291889 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
119291853 GTTATTCATA
119291863 ATTAATATGAATT
1 ATTAATATGAATT
119291876 ATTAATATGAATT
1 ATTAATATGAATT
119291889 A
1 A
119291890 GAGACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:119292076 original size:21 final size:21
Alignment explanation
Indices: 119292052--119292091 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
119292042 ATTAAAATTT
119292052 TATATATATTTAT-TATTTATC
1 TATATAT-TTTATATATTTATC
119292073 TATATATTTTATATATTTA
1 TATATATTTTATATATTTA
119292092 ATATATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TATATATTTTATATATTTATC
Found at i:119292096 original size:11 final size:9
Alignment explanation
Indices: 119292048--119292109 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
119292038 TTAAATTAAA
119292048 ATTTTATAT
1 ATTTTATAT
119292057 ATATTTAT-T
1 AT-TTTATAT
119292066 ATTTATCTATAT
1 A-TT-T-TATAT
119292078 ATTTTATAT
1 ATTTTATAT
*
119292087 ATTTAATAT
1 ATTTTATAT
*
119292096 ATTTAATAT
1 ATTTTATAT
*
119292105 CTTTT
1 ATTTT
119292110 TTTATATCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
9 30 0.67
10 8 0.18
11 5 0.11
12 2 0.04
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (9 bp):
ATTTTATAT
Found at i:119292100 original size:17 final size:18
Alignment explanation
Indices: 119292050--119292104 Score: 62
Period size: 17 Copynumber: 3.1 Consensus size: 18
119292040 AAATTAAAAT
119292050 TTTATATATATTTAT-TA
1 TTTATATATATTTATATA
119292067 TTTATCTATATATTTTATATA
1 TTTA--TATATA-TTTATATA
119292088 TTTA-ATATATTTA-ATA
1 TTTATATATATTTATATA
119292104 T
1 T
119292105 CTTTTTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.12
17 8 0.24
18 5 0.15
19 6 0.18
20 5 0.15
21 6 0.18
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATATATTTATATA
Found at i:119292196 original size:17 final size:17
Alignment explanation
Indices: 119292174--119292212 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
119292164 CTGACTCCAT
*
119292174 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
119292191 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
119292208 TTTTA
1 TTTTA
119292213 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:119292378 original size:15 final size:17
Alignment explanation
Indices: 119292348--119292379 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
119292338 GTCAAAATCT
119292348 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
119292365 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
119292380 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:119293029 original size:18 final size:18
Alignment explanation
Indices: 119293002--119293044 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
119292992 CGCATAAAAA
* *
119293002 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
119293020 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
119293038 GAAAGAA
1 GAAAGAA
119293045 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:119297800 original size:55 final size:53
Alignment explanation
Indices: 119297712--119297864 Score: 218
Period size: 55 Copynumber: 2.9 Consensus size: 53
119297702 NNNNNTTTAC
* *
119297712 AAAATTACCAAAATACCCCTGGTTTATATAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTATAAAAATTACCAAAATACCC-TAGTTT-T
* *
119297767 AAAATTACTAAAATACCCTTGGTTTATAAAAATTACCAAAATACCCTAGTTTT
1 AAAATTACCAAAATACCCCTGGTTTATAAAAATTACCAAAATACCCTAGTTTT
* * *
119297820 TAAATTACCAAAATACCCCTGATTTGT-AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCCCTGGTTTATAAAAATTACCAAAATACCC
119297865 CTATAGGGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
52 18 0.20
53 23 0.26
54 5 0.06
55 43 0.48
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGGTTTATAAAAATTACCAAAATACCCTAGTTTT
Found at i:119297865 original size:27 final size:27
Alignment explanation
Indices: 119297707--119297866 Score: 207
Period size: 27 Copynumber: 5.9 Consensus size: 27
119297697 NNNNNNNNNN
*
119297707 TTTACAAAATTACCAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
*
119297734 TTTATATAAATTACCAAAATACCCTTGG
1 TTTATA-AAATTACCAAAATACCCCTGG
* * *
119297762 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTGG
*
119297789 TTTATAAAAATTACCAAAATA-CCCTAG
1 TTTAT-AAAATTACCAAAATACCCCTGG
* *
119297816 TTT-TTAAATTACCAAAATACCCCTGA
1 TTTATAAAATTACCAAAATACCCCTGG
*
119297842 TTTGTAAAATTACCAAAATACCCCT
1 TTTATAAAATTACCAAAATACCCCT
119297867 ATAGGGTAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
25 14 0.12
26 8 0.07
27 56 0.48
28 39 0.33
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.33
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGG
Found at i:119297880 original size:53 final size:51
Alignment explanation
Indices: 119297713--119297892 Score: 173
Period size: 53 Copynumber: 3.4 Consensus size: 51
119297703 NNNNTTTACA
*
119297713 AAATTACCAAAATACCCCTGGTTTATATAAATTACCAAAATACCCT-TGGTTTGT
1 AAATTACCAAAATACCCCTGATTTATA-AAATTACCAAAATACCCTATGG---GT
* * * ***
119297767 AAAATTACTAAAATACCCTTGGTTTATAAAAATTACCAAAATACCCTAGTTTTT
1 -AAATTACCAAAATACCCCTGATTTAT-AAAATTACCAAAATACCCTA-TGGGT
*
119297821 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTATAGGGT
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATA-CCCTAT-GGGT
* **
119297874 AGATTACTGAAATACCCCT
1 AAATTACCAAAATACCCCT
119297893 ATAAGGTAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
52 16 0.15
53 44 0.42
54 1 0.01
55 42 0.40
56 1 0.01
57 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (51 bp):
AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTATGGGT
Found at i:119297902 original size:53 final size:54
Alignment explanation
Indices: 119297845--119297999 Score: 190
Period size: 53 Copynumber: 2.9 Consensus size: 54
119297835 CCCCTGATTT
* *
119297845 GTAAAATTACCAAAATACCCCTATAGGGTAG-ATTACTGAAATACCCCTATAAG
1 GTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTATAAG
** * * *
119297898 GTAAAATTACTGAAATACCCCTGTATGGTAGAATTACTGAAA-A-CCCTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTATAAG
** *
119297950 GTAGGATTACCAAAATACCCTTGTAAGGTAGAAATTACTGAAATACCCCT
1 GTAAAATTACCAAAATACCCCTGTAAGGTAG-AATTACTGAAATACCCCT
119298000 GTAGGATAGA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
52 32 0.37
53 39 0.45
54 11 0.13
55 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCTATAAG
Found at i:119297905 original size:80 final size:80
Alignment explanation
Indices: 119297821--119298015 Score: 218
Period size: 80 Copynumber: 2.4 Consensus size: 80
119297811 CCTAGTTTTT
** * **
119297821 AAATTACCAAAATACCCCTG-ATTTGTAAAATTACCAAAATACCCCTATAGGGTA-GATTACTGA
1 AAATTACTGAAATACCCCTGTA-TGGTAAAATTACCAAAA-A-CCCTATAGGGTAGGATTACCAA
119297884 AATACCCCTATAAGGTA-
63 AATACCCCTATAAGGTAG
* ** *
119297901 AAATTACTGAAATACCCCTGTATGGTAGAATTACTGAAAACCCTGTAGGGTAGGATTACCAAAAT
1 AAATTACTGAAATACCCCTGTATGGTAAAATTACCAAAAACCCTATAGGGTAGGATTACCAAAAT
* *
119297966 ACCCTTGTAAGGTAG
66 ACCCCTATAAGGTAG
*
119297981 AAATTACTGAAATACCCCTGTA-GGATAGAATTACC
1 AAATTACTGAAATACCCCTGTATGG-TAAAATTACC
119298016 GAGATACCCT
Statistics
Matches: 99, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 11 0.11
79 25 0.25
80 62 0.63
81 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (80 bp):
AAATTACTGAAATACCCCTGTATGGTAAAATTACCAAAAACCCTATAGGGTAGGATTACCAAAAT
ACCCCTATAAGGTAG
Found at i:119297914 original size:27 final size:27
Alignment explanation
Indices: 119297845--119298024 Score: 161
Period size: 27 Copynumber: 6.7 Consensus size: 27
119297835 CCCCTGATTT
** * *
119297845 GTAAAATTACCAAAATACCCCTATAGG
1 GTAAAATTACTGAAATACCCCTGTAAG
* *
119297872 GT-AGATTACTGAAATACCCCTATAAG
1 GTAAAATTACTGAAATACCCCTGTAAG
*
119297898 GTAAAATTACTGAAATACCCCTGTATG
1 GTAAAATTACTGAAATACCCCTGTAAG
* *
119297925 GTAGAATTACTGAAA-A-CCCTGTAGG
1 GTAAAATTACTGAAATACCCCTGTAAG
** ** *
119297950 GTAGGATTACCAAAATACCCTTGTAAG
1 GTAAAATTACTGAAATACCCCTGTAAG
119297977 GTAGAAATTACTGAAATACCCCTGT-AG
1 GTA-AAATTACTGAAATACCCCTGTAAG
* * *
119298004 GATAGAATTACCGAGATACCC
1 G-TAAAATTACTGAAATACCC
119298025 TCGTGGGGTA
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
25 20 0.16
26 24 0.19
27 64 0.51
28 18 0.14
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCCTGTAAG
Found at i:119298059 original size:34 final size:34
Alignment explanation
Indices: 119298016--119298083 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
119298006 TAGAATTACC
119298016 GAGATACCCTCGTGGGGTAAAATGTGACAGCCTT
1 GAGATACCCTCGTGGGGTAAAATGTGACAGCCTT
119298050 GAGATACCCTCGTGGGGTAAAATGTGACAGCCTT
1 GAGATACCCTCGTGGGGTAAAATGTGACAGCCTT
119298084 AAAACGACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (34 bp):
GAGATACCCTCGTGGGGTAAAATGTGACAGCCTT
Found at i:119299834 original size:40 final size:40
Alignment explanation
Indices: 119299755--119299912 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
119299745 TTCGAATGAT
* * * *
119299755 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
119299795 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
119299835 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
119299875 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
119299913 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:119299933 original size:80 final size:80
Alignment explanation
Indices: 119299755--119299942 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
119299745 TTCGAATGAT
* *
119299755 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
119299820 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
119299835 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
119299896 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
119299916 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
119299943 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:119307908 original size:40 final size:40
Alignment explanation
Indices: 119307829--119307986 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
119307819 TTCGAATGAT
* * * *
119307829 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
119307869 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
119307909 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
119307949 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
119307987 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:119308007 original size:80 final size:80
Alignment explanation
Indices: 119307829--119308016 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
119307819 TTCGAATGAT
* *
119307829 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
119307894 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
119307909 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
119307970 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
119307990 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
119308017 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:119310157 original size:26 final size:27
Alignment explanation
Indices: 119310128--119310187 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119310118 CCACATATAT
*
119310128 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119310154 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119310181 ATATCTG
1 ATATCTG
119310188 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119310323 original size:6 final size:6
Alignment explanation
Indices: 119310306--119310423 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
119310296 TTGCATTCAT
* * * *
119310306 ATTCTA ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
119310356 AGTCTG ATTCTG ATTCTG ATT-TG -TTACTTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG
*
119310404 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
119310424 AACATTTCTT
Statistics
Matches: 88, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
4 2 0.02
5 7 0.08
6 66 0.75
7 9 0.10
8 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:119310340 original size:25 final size:25
Alignment explanation
Indices: 119310312--119310397 Score: 81
Period size: 25 Copynumber: 3.5 Consensus size: 25
119310302 TCATATTCTA
119310312 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTGATACTG
* * *
119310337 ATTCTGATTCTATCACCTAAGT-CTG
1 ATTCTGATTCTGTTACCTGA-TACTG
*
119310362 ATTCTGATTCTGATT---TGTTACTTG
1 ATTCTGATTCTG-TTACCTGATAC-TG
119310386 ATTCTGATTCTG
1 ATTCTGATTCTG
119310398 ATTCTCATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
22 1 0.02
23 2 0.04
24 14 0.28
25 31 0.62
26 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTGATACTG
Found at i:119312604 original size:53 final size:53
Alignment explanation
Indices: 119312541--119312734 Score: 230
Period size: 53 Copynumber: 3.6 Consensus size: 53
119312531 CTTTAGTTTC
* **
119312541 AAATTACCAAAATACCCTCATTAGTAAAATTACCAAAATACCCTTGTTTTACA
1 AAATTACCAAAATACCCTCATTAGTAAAATTACCAAAATACCCTTGGTTTGTA
** *
119312594 AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCATTAGTAAAATTACCAAAATACCCTTGGTTTGTA
* * ** *
119312647 AAATTACTAAAATAACCTTGGTTTA-TAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAAT-ACCCT-CATTAGTAAAATTACCAAAATACCCTTGGTTTGTA
*
119312701 AAATTACCAAAATACCC-CAGATTTGTAAAATTAC
1 AAATTACCAAAATACCCTC--ATTAGTAAAATTAC
119312735 TGAAATACTG
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
53 64 0.53
54 53 0.44
55 3 0.03
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
AAATTACCAAAATACCCTCATTAGTAAAATTACCAAAATACCCTTGGTTTGTA
Found at i:119312742 original size:27 final size:27
Alignment explanation
Indices: 119312541--119312734 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
119312531 CTTTAGTTTC
** *
119312541 AAATTACCAAAATA-CCCTCATTAGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
119312567 AAATTACCAAAATACCCTTGTTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
119312594 AAATTACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
119312620 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
119312647 AAATTACTAAAATAACCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
119312674 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
119312701 AAATTACCAAAATACCCCAGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
119312728 AAATTAC
1 AAATTAC
119312735 TGAAATACTG
Statistics
Matches: 146, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 36 0.25
27 110 0.75
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:119312759 original size:27 final size:27
Alignment explanation
Indices: 119312729--119312922 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
119312719 AGATTTGTAA
**
119312729 AATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119312756 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
119312783 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119312810 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
119312837 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119312864 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
119312891 AATTACCGAGATA-CCCTCGT-GGGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
119312917 AATTAC
1 AATTAC
119312923 CATTTTGCCC
Statistics
Matches: 147, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 15 0.10
27 132 0.90
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:119312760 original size:54 final size:53
Alignment explanation
Indices: 119312702--119312922 Score: 216
Period size: 54 Copynumber: 4.1 Consensus size: 53
119312692 TGGTTTGTAA
* ** * *
119312702 AATTACCAAAATACCCCAGAT-TTGTAAAATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATACT-CTGTAGGGTAG
*
119312756 AATTACTGAAATACCCCTG-TAAGGTAGAATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATA-CTCTGTAGGGTAG
* * * * *
119312810 AATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAG
1 AATTACTAAAATACCCCGATAAGGTAGAATTACCGAAATACTC-TGTAGGGTAG
* * * *
119312864 AATTACTAAAATACCCCTG-TAGGGTAGAATTACCGAGATACCCTCGT-GGGTAA
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATACTCT-GTAGGGTAG
119312917 AATTAC
1 AATTAC
119312923 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
53 15 0.10
54 128 0.88
55 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (53 bp):
AATTACTAAAATACCCCGATAAGGTAGAATTACCGAAATACTCTGTAGGGTAG
Found at i:119312760 original size:81 final size:80
Alignment explanation
Indices: 119312595--119312852 Score: 238
Period size: 81 Copynumber: 3.2 Consensus size: 80
119312585 TGTTTTACAA
* *
119312595 AATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACTGAAA
* * *
119312659 TAACCTTGGTTTA---TAA
65 T-A-C-TGCTATAGGGTAG
*
119312675 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCAGATTTGTAAAATTACTGAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTACTGAAA
*
119312740 TACTGCTGTAGGGTAG
65 TACTGCTATAGGGTAG
** ** * * * ** *
119312756 AATTACTGAAATACCCCT-GTAAGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGT-TTGTAAAATTACTGAA
**
119312820 ATACCCCTATAGGGTAG
64 ATACTGCTATAGGGTAG
*
119312837 AATTACCGAAATACCC
1 AATTACCAAAATACCC
119312853 TTATAGGGTA
Statistics
Matches: 150, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.03
79 1 0.01
80 18 0.12
81 126 0.84
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACTGAAAT
ACTGCTATAGGGTAG
Found at i:119312863 original size:81 final size:81
Alignment explanation
Indices: 119312702--119312906 Score: 250
Period size: 81 Copynumber: 2.5 Consensus size: 81
119312692 TGGTTTGTAA
* ** * ** * *
119312702 AATTACCAAAATACCCCAG-ATTTGTAAAATTACTGAAATACTGCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGTA-GGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAA
*
119312766 ATACCCCTGTAAGGTAG
65 ATACCCCTATAAGGTAG
* *
119312783 AATTACCGAAATACCTCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
* *
119312848 TACCCTTATAGGGTAG
66 TACCCCTATAAGGTAG
* * *
119312864 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCC
119312907 TCGTGGGTAA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
TACCCCTATAAGGTAG
Found at i:119313650 original size:26 final size:27
Alignment explanation
Indices: 119313621--119313680 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119313611 CCATATATAT
*
119313621 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119313647 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119313674 ATATCTG
1 ATATCTG
119313681 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119313651 original size:71 final size:67
Alignment explanation
Indices: 119313516--119313653 Score: 168
Period size: 71 Copynumber: 2.0 Consensus size: 67
119313506 AAGCATTCTA
* * *
119313516 GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATC
1 GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATC
119313581 TG
66 TG
* * * * *
119313583 GCAGTCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATCTGTTCTGGTGGCCTAGCCACAA
1 GCAGCCTCGCTGCAATCTGATGGCCTCGCC----ACATATATCTGTTCTGGTGACCTAGCCACAA
119313648 TATCTG
62 TATCTG
119313654 TATCTGGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 27 0.46
71 32 0.54
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATC
TG
Found at i:119313838 original size:31 final size:30
Alignment explanation
Indices: 119313797--119313907 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
119313787 TTGCATTCAT
* * * *
119313797 ATTCTAATTCTAATTTTGTTACCTGATACTG
1 ATTCTGATTCT-ATTTTGTAATCTGATTCTG
****
119313828 ATTCTGATTCTATCACCTAAGTCTGATTCTG
1 ATTCTGATTCTATTTTGTAA-TCTGATTCTG
*
119313859 ATTCTGATTCTGATTTTGTCATCTGATTCTG
1 ATTCTGATTCT-ATTTTGTAATCTGATTCTG
119313890 ATTCTGATTCTCATTTTG
1 ATTCTGATTCT-ATTTTG
119313908 ATTCTAGTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
30 4 0.06
31 56 0.88
32 4 0.06
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTATTTTGTAATCTGATTCTG
Found at i:119313860 original size:6 final size:6
Alignment explanation
Indices: 119313849--119313912 Score: 76
Period size: 6 Copynumber: 10.5 Consensus size: 6
119313839 ATCACCTAAG
*
119313849 TCTGAT TCTGAT TCTGAT TCTGAT TTTG-T CATCTGAT TCTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT
* *
119313898 TCTCAT TTTGAT TCT
1 TCTGAT TCTGAT TCT
119313913 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.02
6 44 0.90
7 3 0.06
8 1 0.02
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.53
Consensus pattern (6 bp):
TCTGAT
Found at i:119313860 original size:37 final size:37
Alignment explanation
Indices: 119313819--119313913 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
119313809 ATTTTGTTAC
*
119313819 CTGATACTGATTCTGATTCTATCACCTAAGTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* * * * *
119313856 CTGATTCTGATTCTGATTTTGTCATCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* *
119313893 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTCTGATTCTA
119313914 GTTTTGATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
Found at i:119315678 original size:26 final size:27
Alignment explanation
Indices: 119315649--119315708 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119315639 CCACATATAT
*
119315649 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119315675 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119315702 ATATCTG
1 ATATCTG
119315709 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119315844 original size:6 final size:6
Alignment explanation
Indices: 119315827--119315945 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
119315817 TTGCATTCAT
* * * *
119315827 ATTCTA ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
119315877 AGTCTG ATTCTG ATTCTG ATTTTG -TTACTTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG
*
119315926 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
119315946 AACATTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 7 0.08
6 68 0.77
7 9 0.10
8 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:119315861 original size:25 final size:25
Alignment explanation
Indices: 119315833--119315919 Score: 81
Period size: 25 Copynumber: 3.5 Consensus size: 25
119315823 TCATATTCTA
119315833 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTGATACTG
* * *
119315858 ATTCTGATTCTATCACCTAAGT-CTG
1 ATTCTGATTCTGTTACCTGA-TACTG
* *
119315883 ATTCTGATTCTGATT--TTGTTACTTG
1 ATTCTGATTCTG-TTACCTGATAC-TG
119315908 ATTCTGATTCTG
1 ATTCTGATTCTG
119315920 ATTCTCATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 45 0.90
26 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTGATACTG
Found at i:119315868 original size:31 final size:30
Alignment explanation
Indices: 119315827--119315924 Score: 91
Period size: 31 Copynumber: 3.4 Consensus size: 30
119315817 TTGCATTCAT
*
119315827 ATTCTAATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGAT-CTG
*
119315858 ATTCTGATTCT-A-TC----ACCTAAGTCTG
1 ATTCTGATTCTGATTCTGTTACCTGA-TCTG
* *
119315883 ATTCTGATTCTGATTTTGTTACTTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGA-TCTG
119315914 ATTCTGATTCT
1 ATTCTGATTCT
119315925 CATTTTGATT
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
25 19 0.35
26 2 0.04
27 1 0.02
29 2 0.04
30 1 0.02
31 29 0.54
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCTGATCTG
Found at i:119318164 original size:81 final size:81
Alignment explanation
Indices: 119318066--119318261 Score: 313
Period size: 81 Copynumber: 2.4 Consensus size: 81
119318056 TTAGTTTAGC
* * *
119318066 AAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCCTTGTTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
119318131 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * * *
119318147 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATAACCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
119318212 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
119318228 AAATTACCAAAATACCC-CAGATTTGTAAAATTAC
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTAC
119318262 TGAAATACTG
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:119318269 original size:27 final size:27
Alignment explanation
Indices: 119318066--119318261 Score: 259
Period size: 27 Copynumber: 7.3 Consensus size: 27
119318056 TTAGTTTAGC
* *
119318066 AAATTACCAAAATA-CCCTCGATTAGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * **
119318093 AAATTACCAAAATACCCTTGTTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
119318120 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
119318147 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
119318174 AAATTACTAAAATAACCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
119318201 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
119318228 AAATTACCAAAATACCCCAGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
119318255 AAATTAC
1 AAATTAC
119318262 TGAAATACTG
Statistics
Matches: 149, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 146 0.98
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:119318286 original size:27 final size:27
Alignment explanation
Indices: 119318256--119318450 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
119318246 AGATTTGTAA
**
119318256 AATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119318283 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
119318310 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119318337 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
119318364 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119318391 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
119318418 AATTACCGAGATA-CCCTCGTGGGGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
119318445 AATTAC
1 AATTAC
119318451 CATTTTGCCC
Statistics
Matches: 147, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 4 0.03
27 143 0.97
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:119318287 original size:54 final size:53
Alignment explanation
Indices: 119318229--119318450 Score: 216
Period size: 54 Copynumber: 4.1 Consensus size: 53
119318219 TGGTTTGTAA
* ** * *
119318229 AATTACCAAAATACCCCAGAT-TTGTAAAATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATACT-CTGTAGGGTAG
*
119318283 AATTACTGAAATACCCCTG-TAAGGTAGAATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATA-CTCTGTAGGGTAG
* * * * *
119318337 AATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAG
1 AATTACTAAAATACCCCGATAAGGTAGAATTACCGAAATACTC-TGTAGGGTAG
* * * * *
119318391 AATTACTAAAATACCCCTG-TAGGGTAGAATTACCGAGATACCCTCGTGGGGTAA
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATACTCT-GTAGGGTAG
119318445 AATTAC
1 AATTAC
119318451 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
53 4 0.03
54 139 0.96
55 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (53 bp):
AATTACTAAAATACCCCGATAAGGTAGAATTACCGAAATACTCTGTAGGGTAG
Found at i:119318287 original size:81 final size:80
Alignment explanation
Indices: 119318121--119318379 Score: 247
Period size: 81 Copynumber: 3.2 Consensus size: 80
119318111 TGTTTTACAA
* *
119318121 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACTGAAA
* * *
119318186 TAACCTTGGTTTA---TAA
65 T-A-C-TGCTATAGGGTAG
*
119318202 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCAGATTTGTAAAATTACTGAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTACTGAAA
*
119318267 TACTGCTGTAGGGTAG
65 TACTGCTATAGGGTAG
** ** * * * ** *
119318283 AATTACTGAAATACCCCT-GTAAGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGT-TTGTAAAATTACTGAA
**
119318347 ATACCCCTATAGGGTAG
64 ATACTGCTATAGGGTAG
*
119318364 AATTACCGAAATACCC
1 AATTACCAAAATACCC
119318380 TTATAGGGTA
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.03
79 1 0.01
80 5 0.03
81 140 0.93
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACTGAAAT
ACTGCTATAGGGTAG
Found at i:119318390 original size:81 final size:81
Alignment explanation
Indices: 119318229--119318433 Score: 250
Period size: 81 Copynumber: 2.5 Consensus size: 81
119318219 TGGTTTGTAA
* ** * ** * *
119318229 AATTACCAAAATACCCCAG-ATTTGTAAAATTACTGAAATACTGCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGTA-GGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAA
*
119318293 ATACCCCTGTAAGGTAG
65 ATACCCCTATAAGGTAG
* *
119318310 AATTACCGAAATACCTCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
* *
119318375 TACCCTTATAGGGTAG
66 TACCCCTATAAGGTAG
* * *
119318391 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCC
119318434 TCGTGGGGTA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
TACCCCTATAAGGTAG
Found at i:119319176 original size:26 final size:27
Alignment explanation
Indices: 119319147--119319206 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119319137 CCATATATAT
*
119319147 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119319173 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119319200 ATATCTG
1 ATATCTG
119319207 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119319177 original size:71 final size:67
Alignment explanation
Indices: 119319042--119319179 Score: 168
Period size: 71 Copynumber: 2.0 Consensus size: 67
119319032 AAGCATTCTA
* * *
119319042 GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATC
1 GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATC
119319107 TG
66 TG
* * * * *
119319109 GCAGTCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATCTGTTCTGGTGGCCTAGCCACAA
1 GCAGCCTCGCTGCAATCTGATGGCCTCGCC----ACATATATCTGTTCTGGTGACCTAGCCACAA
119319174 TATCTG
62 TATCTG
119319180 TATCTGGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 27 0.46
71 32 0.54
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATC
TG
Found at i:119319365 original size:31 final size:30
Alignment explanation
Indices: 119319324--119319434 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
119319314 TTGCATTCAT
* * * *
119319324 ATTCTAATTCTAATTTTGTTACCTGATACTG
1 ATTCTGATTCT-ATTTTGTAATCTGATTCTG
****
119319355 ATTCTGATTCTATCACCTAAGTCTGATTCTG
1 ATTCTGATTCTATTTTGTAA-TCTGATTCTG
*
119319386 ATTCTGATTCTGATTTTGTCATCTGATTCTG
1 ATTCTGATTCT-ATTTTGTAATCTGATTCTG
119319417 ATTCTGATTCTCATTTTG
1 ATTCTGATTCT-ATTTTG
119319435 ATTCTAGTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
30 4 0.06
31 56 0.88
32 4 0.06
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTATTTTGTAATCTGATTCTG
Found at i:119319387 original size:6 final size:6
Alignment explanation
Indices: 119319376--119319439 Score: 76
Period size: 6 Copynumber: 10.5 Consensus size: 6
119319366 ATCACCTAAG
*
119319376 TCTGAT TCTGAT TCTGAT TCTGAT TTTG-T CATCTGAT TCTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT
* *
119319425 TCTCAT TTTGAT TCT
1 TCTGAT TCTGAT TCT
119319440 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.02
6 44 0.90
7 3 0.06
8 1 0.02
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.53
Consensus pattern (6 bp):
TCTGAT
Found at i:119319387 original size:37 final size:37
Alignment explanation
Indices: 119319346--119319440 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
119319336 ATTTTGTTAC
*
119319346 CTGATACTGATTCTGATTCTATCACCTAAGTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* * * * *
119319383 CTGATTCTGATTCTGATTTTGTCATCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* *
119319420 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTCTGATTCTA
119319441 GTTTTGATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
Found at i:119321997 original size:42 final size:41
Alignment explanation
Indices: 119321943--119322097 Score: 148
Period size: 42 Copynumber: 3.7 Consensus size: 41
119321933 CCGAGACTAT
119321943 GTGTAAGACCATATCTGGGATATGGCATCATTACGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCA-TACGAGATTTC
* * * ** *
119321985 GTGTAAGCCCATATCTAGGATATGGCATCGATATGTTATTTT
1 GTGTAAGACCATATCTGGGATATGGCATC-ATACGAGATTTC
* ** * * **
119322027 GTGTAAGATCATAGATGGGCTATTGGCATCAATGCGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATC-ATACGAGATTTC
*
119322070 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
119322098 TGATGTGGTA
Statistics
Matches: 86, Mismatches: 25, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
42 56 0.65
43 30 0.35
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATCATACGAGATTTC
Found at i:119322115 original size:85 final size:84
Alignment explanation
Indices: 119321938--119322116 Score: 205
Period size: 85 Copynumber: 2.1 Consensus size: 84
119321928 GGTTACCGAG
** * ** * *
119321938 ACTATGTGTAAGACCATATCTGGGATATGGCATCATTACGAGATTTCGTGTAAGCCCATATCTAG
1 ACTATGTGTAAGACCATAGATGGGATATGGCATCAATACGAGATCCCATGTAAGACCATATCTAG
*
119322003 GATATGGCATCGATATGTT
66 GATATGGCATCGATATGGT
* * * * * *
119322022 ATTTTGTGTAAGATCATAGATGGGCTATTGGCATCAATGCGAGATCCCATGTAAGACCATATCTG
1 ACTATGTGTAAGACCATAGATGGGATA-TGGCATCAATACGAGATCCCATGTAAGACCATATCTA
* *
119322087 GGATATGGCATTGATGTGGT
65 GGATATGGCATCGATATGGT
119322107 ACTATGTGTA
1 ACTATGTGTA
119322117 CGAGATACCC
Statistics
Matches: 76, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
84 21 0.28
85 55 0.72
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (84 bp):
ACTATGTGTAAGACCATAGATGGGATATGGCATCAATACGAGATCCCATGTAAGACCATATCTAG
GATATGGCATCGATATGGT
Found at i:119323453 original size:40 final size:40
Alignment explanation
Indices: 119323398--119323488 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 40
119323388 GTGCTAAGTG
* * * * *
119323398 ACTAAATCCGGACTAAGATGCGACGGCATACGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
* *
119323438 ACTAAATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
119323478 ACTAAATCCGG
1 ACTAAATCCGG
119323489 GTTGAGTCCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATACGAGCAAGCT
Found at i:119325693 original size:26 final size:27
Alignment explanation
Indices: 119325664--119325723 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119325654 CCACATATAT
*
119325664 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119325690 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119325717 ATATCTG
1 ATATCTG
119325724 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119325858 original size:6 final size:6
Alignment explanation
Indices: 119325841--119325934 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
119325831 TTGCATTCAT
* * * *
119325841 ATTCTA ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
119325891 AGTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
119325935 AACATTTCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 5 0.07
6 55 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:119325875 original size:25 final size:25
Alignment explanation
Indices: 119325847--119325908 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
119325837 TCATATTCTA
* *
119325847 ATTCTGATTCTGTTACCTGA-TACTG
1 ATTCTGATTCTGTCACCTAAGT-CTG
*
119325872 ATTCTGATTCTATCACCTAAGTCTG
1 ATTCTGATTCTGTCACCTAAGTCTG
119325897 ATTCTGATTCTG
1 ATTCTGATTCTG
119325909 ATTCTCATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTAAGTCTG
Found at i:119328150 original size:81 final size:81
Alignment explanation
Indices: 119328052--119328247 Score: 313
Period size: 81 Copynumber: 2.4 Consensus size: 81
119328042 TTAGTTTAGC
* * *
119328052 AAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCCTTGTTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
119328117 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * * *
119328133 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATAACCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
119328198 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
119328214 AAATTACCAAAATACCC-CAGATTTGTAAAATTAC
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTAC
119328248 TGAAATACTG
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:119328255 original size:27 final size:27
Alignment explanation
Indices: 119328052--119328247 Score: 259
Period size: 27 Copynumber: 7.3 Consensus size: 27
119328042 TTAGTTTAGC
* *
119328052 AAATTACCAAAATA-CCCTCGATTAGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * **
119328079 AAATTACCAAAATACCCTTGTTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
119328106 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
119328133 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
119328160 AAATTACTAAAATAACCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
119328187 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
119328214 AAATTACCAAAATACCCCAGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
119328241 AAATTAC
1 AAATTAC
119328248 TGAAATACTG
Statistics
Matches: 149, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 146 0.98
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:119328272 original size:27 final size:27
Alignment explanation
Indices: 119328242--119328435 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
119328232 AGATTTGTAA
**
119328242 AATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119328269 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
119328296 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119328323 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
119328350 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119328377 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
119328404 AATTACCGAGATA-CCCTCGT-GGGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
119328430 AATTAC
1 AATTAC
119328436 CATTTTGCCC
Statistics
Matches: 147, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 15 0.10
27 132 0.90
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:119328273 original size:54 final size:53
Alignment explanation
Indices: 119328215--119328435 Score: 216
Period size: 54 Copynumber: 4.1 Consensus size: 53
119328205 TGGTTTGTAA
* ** * *
119328215 AATTACCAAAATACCCCAGAT-TTGTAAAATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATACT-CTGTAGGGTAG
*
119328269 AATTACTGAAATACCCCTG-TAAGGTAGAATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATA-CTCTGTAGGGTAG
* * * * *
119328323 AATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTATAGGGTAG
1 AATTACTAAAATACCCCGATAAGGTAGAATTACCGAAATACTC-TGTAGGGTAG
* * * *
119328377 AATTACTAAAATACCCCTG-TAGGGTAGAATTACCGAGATACCCTCGT-GGGTAA
1 AATTACTAAAATACCCC-GATAAGGTAGAATTACCGAAATACTCT-GTAGGGTAG
119328430 AATTAC
1 AATTAC
119328436 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
53 15 0.10
54 128 0.88
55 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (53 bp):
AATTACTAAAATACCCCGATAAGGTAGAATTACCGAAATACTCTGTAGGGTAG
Found at i:119328273 original size:81 final size:80
Alignment explanation
Indices: 119328107--119328365 Score: 247
Period size: 81 Copynumber: 3.2 Consensus size: 80
119328097 TGTTTTACAA
* *
119328107 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACTGAAA
* * *
119328172 TAACCTTGGTTTA---TAA
65 T-A-C-TGCTATAGGGTAG
*
119328188 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCAGATTTGTAAAATTACTGAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTACTGAAA
*
119328253 TACTGCTGTAGGGTAG
65 TACTGCTATAGGGTAG
** ** * * * ** *
119328269 AATTACTGAAATACCCCT-GTAAGGTAGAATTACCGAAATACCTCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGT-TTGTAAAATTACTGAA
**
119328333 ATACCCCTATAGGGTAG
64 ATACTGCTATAGGGTAG
*
119328350 AATTACCGAAATACCC
1 AATTACCAAAATACCC
119328366 TTATAGGGTA
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
78 5 0.03
79 1 0.01
80 5 0.03
81 140 0.93
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACTGAAAT
ACTGCTATAGGGTAG
Found at i:119328376 original size:81 final size:81
Alignment explanation
Indices: 119328215--119328419 Score: 250
Period size: 81 Copynumber: 2.5 Consensus size: 81
119328205 TGGTTTGTAA
* ** * ** * *
119328215 AATTACCAAAATACCCCAG-ATTTGTAAAATTACTGAAATACTGCTGTAGGGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGTA-GGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAA
*
119328279 ATACCCCTGTAAGGTAG
65 ATACCCCTATAAGGTAG
* *
119328296 AATTACCGAAATACCTCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
* *
119328361 TACCCTTATAGGGTAG
66 TACCCCTATAAGGTAG
* * *
119328377 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCC
119328420 TCGTGGGTAA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAA
TACCCCTATAAGGTAG
Found at i:119329163 original size:26 final size:27
Alignment explanation
Indices: 119329134--119329193 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119329124 CCATATATAT
*
119329134 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119329160 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119329187 ATATCTG
1 ATATCTG
119329194 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119329352 original size:31 final size:30
Alignment explanation
Indices: 119329311--119329421 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
119329301 TTGCATTCAT
* * * *
119329311 ATTCTAATTCTAATTTTGTTACCTGATACTG
1 ATTCTGATTCT-ATTTTGTAATCTGATTCTG
****
119329342 ATTCTGATTCTATCACCTAAGTCTGATTCTG
1 ATTCTGATTCTATTTTGTAA-TCTGATTCTG
*
119329373 ATTCTGATTCTGATTTTGTCATCTGATTCTG
1 ATTCTGATTCT-ATTTTGTAATCTGATTCTG
119329404 ATTCTGATTCTCATTTTG
1 ATTCTGATTCT-ATTTTG
119329422 ATTCTAGTTT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
30 4 0.06
31 56 0.88
32 4 0.06
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTATTTTGTAATCTGATTCTG
Found at i:119329374 original size:6 final size:6
Alignment explanation
Indices: 119329363--119329426 Score: 76
Period size: 6 Copynumber: 10.5 Consensus size: 6
119329353 ATCACCTAAG
*
119329363 TCTGAT TCTGAT TCTGAT TCTGAT TTTG-T CATCTGAT TCTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT
* *
119329412 TCTCAT TTTGAT TCT
1 TCTGAT TCTGAT TCT
119329427 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.02
6 44 0.90
7 3 0.06
8 1 0.02
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.53
Consensus pattern (6 bp):
TCTGAT
Found at i:119329374 original size:37 final size:37
Alignment explanation
Indices: 119329333--119329427 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
119329323 ATTTTGTTAC
*
119329333 CTGATACTGATTCTGATTCTATCACCTAAGTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* * * * *
119329370 CTGATTCTGATTCTGATTTTGTCATCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* *
119329407 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTCTGATTCTA
119329428 GTTTTGATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
Found at i:119331305 original size:6 final size:6
Alignment explanation
Indices: 119331294--119331335 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
119331284 ATCACCTAAG
* *
119331294 TCTGAT TCTGAT TCTGAT TCTCAT TTTGAT TCT-AGT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGA-T TCTGAT
119331336 AACATTTCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (6 bp):
TCTGAT
Found at i:119334249 original size:40 final size:40
Alignment explanation
Indices: 119334141--119334350 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
119334131 CGGGATTTAA
* * * * *
119334141 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
119334181 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119334221 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119334261 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119334301 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119334341 CCGGATATAT
1 CCGGATATAT
119334351 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:119342382 original size:40 final size:40
Alignment explanation
Indices: 119342274--119342483 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
119342264 CGGGATTTAA
* * * * *
119342274 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
119342314 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119342354 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119342394 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119342434 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
119342474 CCGGATATAT
1 CCGGATATAT
119342484 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:119345014 original size:81 final size:81
Alignment explanation
Indices: 119344916--119345110 Score: 311
Period size: 81 Copynumber: 2.4 Consensus size: 81
119344906 TTAGTTTAGC
* * * *
119344916 AAATTACCAAAATACCCTCGATTAGTAAAATTACCAAAATACCCTTGTTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTAGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
119344981 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * * *
119344997 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATAACCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCTAGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
119345062 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
119345078 AAATTACCAAAATACCC-AGATTTGTAAAATTAC
1 AAATTACCAAAATACCCTAGATTTGTAAAATTAC
119345111 TGAAATACTG
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 14 0.13
81 91 0.87
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTAGATTTGTAAAATTACCAAAATAACCTTGGTTTACAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:119345118 original size:26 final size:26
Alignment explanation
Indices: 119344916--119345110 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 26
119344906 TTAGTTTAGC
* *
119344916 AAATTACCAAAATACCCTCGATTAGTA
1 AAATTACCAAAATACCCT-GGTTTGTA
*
119344943 AAATTACCAAAATACCCTTGTTT-TACA
1 AAATTACCAAAATACCCTGGTTTGT--A
119344970 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
119344997 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTA
* * *
119345024 AAATTACTAAAATAACCTTGGTTTATA
1 AAATTACCAAAAT-ACCCTGGTTTGTA
119345051 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* *
119345078 AAATTACCAAAATACCCAGATTTGTA
1 AAATTACCAAAATACCCTGGTTTGTA
119345104 AAATTAC
1 AAATTAC
119345111 TGAAATACTG
Statistics
Matches: 149, Mismatches: 12, Indels: 15
0.85 0.07 0.09
Matches are distributed among these distances:
25 1 0.01
26 23 0.15
27 113 0.76
28 11 0.07
29 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTGTA
Found at i:119345137 original size:27 final size:27
Alignment explanation
Indices: 119345105--119345299 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
119345095 AGATTTGTAA
**
119345105 AATTACTGAAATACTGCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119345132 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
119345159 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119345186 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
119345213 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
119345240 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
119345267 AATTACCGAGATA-CCCTCGTGGGGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
119345294 AATTAC
1 AATTAC
119345300 CATTTTGCCC
Statistics
Matches: 147, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 4 0.03
27 143 0.97
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:119345179 original size:54 final size:53
Alignment explanation
Indices: 119345105--119345299 Score: 273
Period size: 54 Copynumber: 3.6 Consensus size: 53
119345095 AGATTTGTAA
* * *
119345105 AATTACTGAAATACTGCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATAC-CCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
119345159 AATTACCGAAATACCTCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACC-CTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
119345213 AATTACCGAAATACCCTTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCC-TGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
119345267 AATTACCGAGATACCCTCGTGGGGTAAAATTAC
1 AATTACCGAAATACCCT-GTAGGGTAGAATTAC
119345300 CATTTTGCCC
Statistics
Matches: 127, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
53 2 0.02
54 125 0.98
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (53 bp):
AATTACCGAAATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:119346026 original size:26 final size:27
Alignment explanation
Indices: 119345997--119346056 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119345987 CCATATATAT
*
119345997 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119346023 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119346050 ATATCTG
1 ATATCTG
119346057 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119346027 original size:71 final size:67
Alignment explanation
Indices: 119345892--119346029 Score: 168
Period size: 71 Copynumber: 2.0 Consensus size: 67
119345882 AAGCATTCTA
* * *
119345892 GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATC
1 GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATC
119345957 TG
66 TG
* * * * *
119345959 GCAGTCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATCTGTTCTGGTGGCCTAGCCACAA
1 GCAGCCTCGCTGCAATCTGATGGCCTCGCC----ACATATATCTGTTCTGGTGACCTAGCCACAA
119346024 TATCTG
62 TATCTG
119346030 TATCTGGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 27 0.46
71 32 0.54
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (67 bp):
GCAGCCTCGCTGCAATCTGATGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAATATC
TG
Found at i:119346122 original size:6 final size:6
Alignment explanation
Indices: 119346111--119346228 Score: 80
Period size: 6 Copynumber: 19.2 Consensus size: 6
119346101 CGAGTAGTTT
* * * *
119346111 TGATTC TGATTC TAATTT TG-TTACC TGATAC TGATTC TGATTC T-ATCACC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGAT--TC
* * *
119346161 TAAGTC TGATTC TGATTC TGATTC TGATTT TG-TCATC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC
* *
119346210 TGATTC TCATTT TGATTC T
1 TGATTC TGATTC TGATTC T
119346229 AGTTTTGATA
Statistics
Matches: 86, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
5 5 0.06
6 71 0.83
7 7 0.08
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:119346149 original size:31 final size:30
Alignment explanation
Indices: 119346111--119346223 Score: 118
Period size: 31 Copynumber: 3.6 Consensus size: 30
119346101 CGAGTAGTTT
* * *
119346111 TGATTCTGATTCTAATTTTGTTACCTGATAC
1 TGATTCTGATTCT-ATTTTGTAATCTGATTC
****
119346142 TGATTCTGATTCTATCACCTAAGTCTGATTC
1 TGATTCTGATTCTATTTTGTAA-TCTGATTC
*
119346173 TGATTCTGATTCTGATTTTGTCATCTGATTC
1 TGATTCTGATTCT-ATTTTGTAATCTGATTC
119346204 TGATTCTGATTCTCATTTTG
1 TGATTCTGATTCT-ATTTTG
119346224 ATTCTAGTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
30 4 0.06
31 59 0.88
32 4 0.06
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
TGATTCTGATTCTATTTTGTAATCTGATTC
Found at i:119346176 original size:37 final size:37
Alignment explanation
Indices: 119346135--119346229 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
119346125 ATTTTGTTAC
*
119346135 CTGATACTGATTCTGATTCTATCACCTAAGTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* * * * *
119346172 CTGATTCTGATTCTGATTTTGTCATCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
* *
119346209 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTCTGATTCTA
119346230 GTTTTGATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAAGTCTGATT
Done.