Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 388 of 770
Found at i:119348787 original size:42 final size:41
Alignment explanation
Indices: 119348733--119348887 Score: 148
Period size: 42 Copynumber: 3.7 Consensus size: 41
119348723 CCGAGACTAT
119348733 GTGTAAGACCATATCTGGGATATGGCATCATTACGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCA-TACGAGATTTC
* * * ** *
119348775 GTGTAAGCCCATATCTAGGATATGGCATCGATATGTTATTTT
1 GTGTAAGACCATATCTGGGATATGGCATC-ATACGAGATTTC
* ** * * **
119348817 GTGTAAGATCATAGATGGGCTATTGGCATCAATGCGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATC-ATACGAGATTTC
*
119348860 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
119348888 TGATGTGGTA
Statistics
Matches: 86, Mismatches: 25, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
42 56 0.65
43 30 0.35
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATCATACGAGATTTC
Found at i:119348905 original size:85 final size:84
Alignment explanation
Indices: 119348728--119348906 Score: 205
Period size: 85 Copynumber: 2.1 Consensus size: 84
119348718 GGTTACCGAG
** * ** * *
119348728 ACTATGTGTAAGACCATATCTGGGATATGGCATCATTACGAGATTTCGTGTAAGCCCATATCTAG
1 ACTATGTGTAAGACCATAGATGGGATATGGCATCAATACGAGATCCCATGTAAGACCATATCTAG
*
119348793 GATATGGCATCGATATGTT
66 GATATGGCATCGATATGGT
* * * * * *
119348812 ATTTTGTGTAAGATCATAGATGGGCTATTGGCATCAATGCGAGATCCCATGTAAGACCATATCTG
1 ACTATGTGTAAGACCATAGATGGGATA-TGGCATCAATACGAGATCCCATGTAAGACCATATCTA
* *
119348877 GGATATGGCATTGATGTGGT
65 GGATATGGCATCGATATGGT
119348897 ACTATGTGTA
1 ACTATGTGTA
119348907 CGAGATACCC
Statistics
Matches: 76, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
84 21 0.28
85 55 0.72
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (84 bp):
ACTATGTGTAAGACCATAGATGGGATATGGCATCAATACGAGATCCCATGTAAGACCATATCTAG
GATATGGCATCGATATGGT
Found at i:119350242 original size:40 final size:40
Alignment explanation
Indices: 119350187--119350309 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
119350177 GTGCTAAGTG
* *
119350187 ACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
* * * *
119350227 ACTAAATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
** *
119350267 ACTAAATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTT
119350307 ACT
1 ACT
119350310 GTAACCGGGC
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
Found at i:119350330 original size:80 final size:80
Alignment explanation
Indices: 119350163--119350339 Score: 184
Period size: 80 Copynumber: 2.2 Consensus size: 80
119350153 CATGTTTTGG
* *
119350163 GTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTTA
1 GTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATACGTGCGAGTTA
119350228 CTAAATCCGGACTAA
66 CTAAATCCGGACTAA
** * *
119350243 GAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGA
1 G-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGGCATACGTGCGA
* * *
119350304 GTTACTGTAA-CCGGGCTAT
62 GTTACT-AAATCCGGACTAA
119350323 GTCCCGAAGGCATTTGA
1 GTCCCGAAGGC-TTTGA
119350340 ATGTGTAGCC
Statistics
Matches: 81, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
79 2 0.02
80 69 0.85
81 10 0.12
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
GTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATACGTGCGAGTTA
CTAAATCCGGACTAA
Found at i:119352483 original size:26 final size:27
Alignment explanation
Indices: 119352454--119352513 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
119352444 CCACATATAT
*
119352454 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
119352480 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
119352507 ATATCTG
1 ATATCTG
119352514 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:119352694 original size:6 final size:6
Alignment explanation
Indices: 119352683--119352746 Score: 76
Period size: 6 Copynumber: 10.5 Consensus size: 6
119352673 ATCACCTAAG
*
119352683 TCTGAT TCTGAT TCTGAT TCTGAT TTTG-T CATCTGAT TCTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT
* *
119352732 TCTCAT TTTGAT TCT
1 TCTGAT TCTGAT TCT
119352747 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.02
6 44 0.90
7 3 0.06
8 1 0.02
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.53
Consensus pattern (6 bp):
TCTGAT
Found at i:119352694 original size:37 final size:37
Alignment explanation
Indices: 119352653--119352747 Score: 109
Period size: 37 Copynumber: 2.6 Consensus size: 37
119352643 ATTTTGTTAC
*
119352653 CTGATACTAATTCTGATTCTATCACCTAAGTCTGATT
1 CTGATTCTAATTCTGATTCTATCACCTAAGTCTGATT
* * * * * *
119352690 CTGATTCTGATTCTGATTTTGTCATCTGATTCTGATT
1 CTGATTCTAATTCTGATTCTATCACCTAAGTCTGATT
* *
119352727 CTGATTCTCATTTTGATTCTA
1 CTGATTCTAATTCTGATTCTA
119352748 GTTTTGATAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (37 bp):
CTGATTCTAATTCTGATTCTATCACCTAAGTCTGATT
Found at i:119352718 original size:31 final size:31
Alignment explanation
Indices: 119352683--119352741 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
119352673 ATCACCTAAG
*
119352683 TCTGATTCTGATTCTGATTCTGATTTTGTCA
1 TCTGATTCTGATTCTGATTCTCATTTTGTCA
119352714 TCTGATTCTGATTCTGATTCTCATTTTG
1 TCTGATTCTGATTCTGATTCTCATTTTG
119352742 ATTCTAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (31 bp):
TCTGATTCTGATTCTGATTCTCATTTTGTCA
Found at i:119355339 original size:42 final size:42
Alignment explanation
Indices: 119355250--119355347 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
119355240 ACCGAGACTA
*
119355250 TGTGTAAGACCATATCTGGGATATGGCATCATTACGAGATTT
1 TGTGTAAGACCATATCTAGGATATGGCATCATTACGAGATTT
* * * **
119355292 CGTGTAAGCCCATATCTAGGATATGGCATCGA-TATGTTATTT
1 TGTGTAAGACCATATCTAGGATATGGCATC-ATTACGAGATTT
*
119355334 TGTGTAAGATCATA
1 TGTGTAAGACCATA
119355348 GATGGGCTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
TGTGTAAGACCATATCTAGGATATGGCATCATTACGAGATTT
Found at i:119355423 original size:85 final size:84
Alignment explanation
Indices: 119355246--119355424 Score: 196
Period size: 85 Copynumber: 2.1 Consensus size: 84
119355236 GGTTACCGAG
** * ** * * *
119355246 ACTATGTGTAAGACCATATCTGGGATATGGCATCATTACGAGATTTCGTGTAAGCCCATATCTAG
1 ACTATGTGTAAGACCATAGATGGGATATGGCATCAATACGAGATCCCATATAAGACCATATCTAG
*
119355311 GATATGGCATCGATATGTT
66 GATATGGCATCGATATGGT
* * * * * *
119355330 ATTTTGTGTAAGATCATAGATGGGCTATTGGCATCAATGCGAGATCCCATATAAGACCATATCTG
1 ACTATGTGTAAGACCATAGATGGGATA-TGGCATCAATACGAGATCCCATATAAGACCATATCTA
* *
119355395 GGATATGGCATTGATGTGGT
65 GGATATGGCATCGATATGGT
119355415 ACTATGTGTA
1 ACTATGTGTA
119355425 CGAGATACCC
Statistics
Matches: 75, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
84 21 0.28
85 54 0.72
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (84 bp):
ACTATGTGTAAGACCATAGATGGGATATGGCATCAATACGAGATCCCATATAAGACCATATCTAG
GATATGGCATCGATATGGT
Found at i:119358090 original size:40 final size:40
Alignment explanation
Indices: 119358024--119358190 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
119358014 AAATTGAATG
* * *
119358024 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
119358063 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
119358103 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
119358143 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
119358183 ATATCCGG
1 ATATCCGG
119358191 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:119366078 original size:40 final size:40
Alignment explanation
Indices: 119366012--119366178 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
119366002 AAATTGAATG
* * *
119366012 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
119366051 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
119366091 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
119366131 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
119366171 ATATCCGG
1 ATATCCGG
119366179 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:119370503 original size:28 final size:27
Alignment explanation
Indices: 119370440--119370509 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
119370430 ATAGTGAGTC
119370440 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
119370467 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
119370495 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
119370510 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:119378311 original size:28 final size:27
Alignment explanation
Indices: 119378248--119378317 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
119378238 ATAGTGAGTC
119378248 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
119378275 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
119378303 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
119378318 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:119381792 original size:30 final size:30
Alignment explanation
Indices: 119381748--119381836 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
119381738 CAAAGATAAC
*
119381748 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
119381777 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
119381807 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
119381837 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:119381796 original size:15 final size:14
Alignment explanation
Indices: 119381748--119381830 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
119381738 CAAAGATAAC
*
119381748 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
119381762 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
119381777 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
119381792 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
119381807 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
119381822 AAGAAACCC
1 AAGAAACCC
119381831 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:119381836 original size:15 final size:15
Alignment explanation
Indices: 119381759--119381836 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
119381749 AGAAAACCGA
119381759 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
119381774 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
119381788 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
119381803 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
119381819 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
119381834 ATA
1 ATA
119381837 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:119384914 original size:93 final size:93
Alignment explanation
Indices: 119384755--119384927 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
119384745 CGCCCATAAG
* ** * *
119384755 CGAACTCGGACTCAACACAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACACAACGAGCTCGAACATTCGCATCCATAAATGAACTCAGACTCAACTCA
119384820 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
119384848 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACACAACGAGCTCGAACATTCGCATCCATAAATGAACTCAGACTCAACTCA
*
119384913 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
119384928 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACACAACGAGCTCGAACATTCGCATCCATAAATGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:119406124 original size:50 final size:49
Alignment explanation
Indices: 119405995--119406189 Score: 187
Period size: 50 Copynumber: 3.9 Consensus size: 49
119405985 ATCTATTCTG
* * * * *
119405995 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGT
* * * **
119406047 -GATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT
119406095 GAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
* * * * * *
119406145 TGGCCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCAGA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
119406190 TAGCTTCGGC
Statistics
Matches: 118, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 39 0.33
50 41 0.35
51 34 0.29
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
Found at i:119409193 original size:40 final size:40
Alignment explanation
Indices: 119409148--119409277 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
119409138 CGGAATATAA
119409148 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
119409188 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
119409228 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
119409268 CCGGATATAA
1 CCGGATATAA
119409278 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:119409292 original size:40 final size:40
Alignment explanation
Indices: 119409164--119409315 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
119409154 ATAAGCATGT
* * *
119409164 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
119409204 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
119409244 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * * *
119409284 GCATAATTGTCTTTGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
119409316 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:119411874 original size:15 final size:15
Alignment explanation
Indices: 119411854--119411918 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
119411844 GTATCTTGGG
119411854 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
119411869 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
119411884 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
119411899 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
119411913 TTTCTT
1 TTTCTT
119411919 GTTATTTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:119411886 original size:30 final size:31
Alignment explanation
Indices: 119411850--119411918 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
119411840 TATCGTATCT
119411850 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
119411880 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
119411910 -GGTTTTCTT
1 TGGGTTTCTT
119411919 GTTATTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:119414172 original size:49 final size:49
Alignment explanation
Indices: 119414055--119414240 Score: 189
Period size: 49 Copynumber: 3.8 Consensus size: 49
119414045 TGACGTCGCA
* * * * *
119414055 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
* **
119414106 TGTGTAGTACTAAGTGCAGGCTACTACTTGTATTAGA-TGGTGAGGTC-CG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
119414155 TGTGTAGTACAAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
119414204 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
119414241 TAGCTTCGGC
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 8 0.07
49 72 0.64
50 4 0.04
51 28 0.25
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:119421090 original size:88 final size:87
Alignment explanation
Indices: 119420998--119421270 Score: 209
Period size: 88 Copynumber: 3.1 Consensus size: 87
119420988 AGACGGCAAA
119420998 TCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGTCACTAGCCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAG-CACTAGCCTTATCTCCCTGAAGTTGCA
119421063 GTGGAGCAGGCTCAATATACAAG
65 GTGGAGCAGGCTCAATATACAAG
* * * * * * * *
119421086 TCTTATCTTCCTAAG-GT-AGCAA-GGAAACAGACTGAAG-ATTGAAGATCTTATATCCCT-AAG
1 TCTTATC-TCC-ATGTATCAGCAATGG-AGCAGATTTAAGCACT--AG-CCTTATCTCCCTGAAG
* * * * *
119421146 TAGTAGTGGAGCA-GATCGAAGATGGCGAA-
60 TTGCAGTGGAGCAGGCTC-AATAT-AC-AAG
* * * * * * *
119421175 TCTTTTCTCCATGTATCGGCAATGGAGTAGATTTTAGCCACCAGCCTTACCTCCCTGAAGGTGCA
1 TCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAG-CACTAGCCTTATCTCCCTGAAGTTGCA
*
119421240 GTGGAGTAGGCTCAATATACAAG
65 GTGGAGCAGGCTCAATATACAAG
119421263 TCTTATCT
1 TCTTATCT
119421271 TCCTGAAGTA
Statistics
Matches: 133, Mismatches: 35, Indels: 34
0.66 0.17 0.17
Matches are distributed among these distances:
86 2 0.02
87 9 0.07
88 62 0.47
89 50 0.38
90 9 0.07
91 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (87 bp):
TCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCACTAGCCTTATCTCCCTGAAGTTGCAG
TGGAGCAGGCTCAATATACAAG
Found at i:119421186 original size:177 final size:178
Alignment explanation
Indices: 119420954--119421742 Score: 826
Period size: 177 Copynumber: 4.4 Consensus size: 178
119420944 AAGTGATAGG
* * * * *
119420954 TCTTATCTCCCTAAGCAGTAGTGGAACAGACCAAAGACGGCAAATCTTATCTCCATGTATCAGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
* * * * *
119421019 ATGGAGCAGATTTAAGTCACTAGCCTTATCTCCCTGAAGTTGC-AGTGGAGCAGGCTCAATATAC
66 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTAGCAAG-AGAGCAGGCTCAAGATAC
119421083 AAGTCTTATCTTCCT-AAGGTAGCAAGGAAACAGACTGAAGATTGAAGA
130 AAGTCTTATCTTCCTAAAGGTAGCAAGGAAACAGACTGAAGATTGAAGA
* * * *
119421131 TCTTATATCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTTTCTCCATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
* * * * * *
119421196 ATGGAGTAGATTTTAGCCACCAGCCTTACCTCCCTGAAGGT-GC-AGTGGAGTAGGCTCAATATA
66 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAA-GTAGCAAG-AGAGCAGGCTCAAGATA
* * * *
119421259 CAAGTCTTATCTTCCTGAA-GTAACAAGGAAGCAAACTGAAGATTGAAGA
129 CAAGTCTTATCTTCCTAAAGGTAGCAAGGAAACAGACTGAAGATTGAAGA
* * * *
119421308 TCTTATCTCCCTAAGCAGTAGCGGAGTAGATCAAAAATGGCGAATCTTATCTCTATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
** * * * *** **
119421373 ACAGAGCAGATTTTAGCCA-TCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATGG
66 ATGGAGCAGATTTTAGCCACT-AGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGCTCAAGATAC
** * * * *
119421437 TGGTCTTATCTTCCT-GAGGTAGCAAGGAAGCAGATTGAAGATTAAAGA
130 AAGTCTTATCTTCCTAAAGGTAGCAAGGAAACAGACTGAAGATTGAAGA
* * * *
119421485 TCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
* * * * *
119421550 ATGGAGCAGATTTTAGCCACGAGCCTTATCTCTCTGAGGTAGCAAGAGAGC-GGTTTGAAGACGG
66 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGG-CTCAAGA---
*** * * * * *
119421614 TGGTAGTCTTATC-TCCTTAAAGTTA-C-AGTGGAATAGACTGAAAATTGCAGA
127 TACAAGTCTTATCTTCC-TAAAGGTAGCAAG-GAAACAGACTGAAGATTGAAGA
* * * *
119421665 TCTTATCTCCCTAAGCAGTTGAGGAGCAGATCAAGGATGGCGAATCTTATCTCTATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
119421730 ATGGAGCAGATTT
66 ATGGAGCAGATTT
119421743 AGGCCACCAA
Statistics
Matches: 520, Mismatches: 78, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
176 5 0.01
177 401 0.77
178 6 0.01
179 5 0.01
180 99 0.19
181 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (178 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTCCATGTATCGGCA
ATGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTAGCAAGAGAGCAGGCTCAAGATACA
AGTCTTATCTTCCTAAAGGTAGCAAGGAAACAGACTGAAGATTGAAGA
Found at i:119421521 original size:354 final size:355
Alignment explanation
Indices: 119420954--119421742 Score: 910
Period size: 354 Copynumber: 2.2 Consensus size: 355
119420944 AAGTGATAGG
* * * * * * * *
119420954 TCTTATCTCCCTAAGCAGTAGTGGAACAGACCAAAGACGGCAAATCTTATCTCCATGTATCAGCA
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATCAAAAATGGCGAATCTTATCTCTATGTATCGGCA
** * * * * * * * **** *
119421019 ATGGAGCAGATTTAAGTCA-CTAGCCTTATCTCCCTGAAGTTGC-AGTGGAGCAGGCTCAATATA
66 ACAGAGCAGATTTTAGCCATC-AGCCTTATCTCTCTGAGGTAGCAAG-AGAGCAGGTTGGCGATG
*** *
119421082 CAAGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTGAAGATCTTATATCCCTAAGT
129 GTGGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTAAAGATCTTATATCCCTAAGT
* * *
119421147 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTTTCTCCATGTATCGGCAATGGAGTAGATTTTAG
194 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTAG
* *
119421212 CCACCAGCCTTACCTCCCTGAAGGT-GC-AGTGGAGTAGG-CTCAATA-TACAAGTCTTATCTTC
259 CCACCAGCCTTACCTCCCTG-AGGTAGCAAG-AGAG-AGGTCTCAAGAGTACAAGTCTTATC-TC
* *
119421273 C-TGAAGTAACA-AGGAAGCAAACTGAAGATTGAAGA
320 CTTAAAGTAACAGAGGAA-CAAACTGAAAATTGAAGA
* *
119421308 TCTTATCTCCCTAAGCAGTAGCGGAGTAGATCAAAAATGGCGAATCTTATCTCTATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATCAAAAATGGCGAATCTTATCTCTATGTATCGGCA
119421373 ACAGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATGGT
66 ACAGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATGGT
* * * *
119421438 GGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTAAAGATCTTATCTCCCTAAGTAG
131 GGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTAAAGATCTTATATCCCTAAGTAG
*
119421503 TAGTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTAGCC
196 TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTAGCC
* * * * * * ***
119421568 ACGAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGTTTGAAGACGGTGGTAGTCTTATCTCCTTA
261 ACCAGCCTTACCTCCCTGAGGTAGCAAGAGAGAGGTCTCAAGA--GTACAAGTCTTATCTCCTTA
* * * * *
119421633 AAGTTACAGTGGAATAGACTGAAAATTGCAGA
324 AAGTAACAGAGGAACAAACTGAAAATTGAAGA
* **
119421665 TCTTATCTCCCTAAGCAGTTGAGGAGCAGATCAAGGATGGCGAATCTTATCTCTATGTATCGGCA
1 TCTTATCTCCCTAAGCAGTAGAGGAGCAGATCAAAAATGGCGAATCTTATCTCTATGTATCGGCA
**
119421730 ATGGAGCAGATTT
66 ACAGAGCAGATTT
119421743 AGGCCACCAA
Statistics
Matches: 365, Mismatches: 60, Indels: 17
0.83 0.14 0.04
Matches are distributed among these distances:
353 6 0.02
354 244 0.67
355 5 0.01
356 3 0.01
357 103 0.28
358 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (355 bp):
TCTTATCTCCCTAAGCAGTAGAGGAGCAGATCAAAAATGGCGAATCTTATCTCTATGTATCGGCA
ACAGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCGATGGT
GGTCTTATCTTCCTAAGGTAGCAAGGAAACAGACTGAAGATTAAAGATCTTATATCCCTAAGTAG
TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTAGCC
ACCAGCCTTACCTCCCTGAGGTAGCAAGAGAGAGGTCTCAAGAGTACAAGTCTTATCTCCTTAAA
GTAACAGAGGAACAAACTGAAAATTGAAGA
Found at i:119425119 original size:46 final size:46
Alignment explanation
Indices: 119425023--119425244 Score: 190
Period size: 46 Copynumber: 4.7 Consensus size: 46
119425013 GGGATAGGAT
* *
119425023 GCTGATGCCATGTCCTGGACATGGTCTTACACTAGCTTAAGTCGTA--
1 GCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTAACTCGTATG
*
119425069 GCTGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCG-A-G
1 GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTA-A-CTCGTATG
* * *
119425115 GCTGATGCATGTCCCAGACGTGTCTTACACAAGC-T--CTCGTCTCACT-
1 GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTAACTCG--T-A-TG
* **
119425161 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCTTAACTCGTAATGTG
1 GCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTAACTCGT-A--TG
119425212 GCTGATGCATGTCCTAGACATGTCTTACACTAG
1 GCTGATGCATGTCCTAGACATGTCTTACACTAG
119425245 GGCTCAATAG
Statistics
Matches: 144, Mismatches: 16, Indels: 29
0.76 0.08 0.15
Matches are distributed among these distances:
41 4 0.03
44 15 0.10
45 17 0.12
46 46 0.32
47 12 0.08
48 12 0.08
49 15 0.10
50 13 0.09
51 10 0.07
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (46 bp):
GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTAACTCGTATG
Found at i:119431772 original size:40 final size:40
Alignment explanation
Indices: 119431727--119431893 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
119431717 CGGAATATAA
119431727 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
119431767 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
119431807 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
119431847 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
119431886 CCGGATAT
1 CCGGATAT
119431894 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:119431877 original size:80 final size:79
Alignment explanation
Indices: 119431727--119431893 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
119431717 CGGAATATAA
* *
119431727 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
119431792 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
119431807 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
119431869 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
119431886 CCGGATAT
1 CCGGATAT
119431894 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:119432742 original size:17 final size:19
Alignment explanation
Indices: 119432719--119432764 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
119432709 AAGAAGCATG
119432719 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
119432737 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
119432755 AATCATGCTC
1 AATCATGCTC
119432765 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:119441905 original size:29 final size:29
Alignment explanation
Indices: 119441872--119441945 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
119441862 GTGACGAGAT
119441872 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
119441901 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
119441930 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
119441946 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:119441961 original size:29 final size:29
Alignment explanation
Indices: 119441929--119442004 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
119441919 CTGGAAATAT
* *
119441929 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
119441958 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
119441987 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
119442005 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:119441972 original size:58 final size:58
Alignment explanation
Indices: 119441872--119442004 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
119441862 GTGACGAGAT
* * * * * *
119441872 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
119441930 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
119441988 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
119442005 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:119449782 original size:29 final size:29
Alignment explanation
Indices: 119449749--119449822 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
119449739 GTGACGAGAT
119449749 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
119449778 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
119449807 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
119449823 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:119449838 original size:29 final size:29
Alignment explanation
Indices: 119449806--119449881 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
119449796 CTGGAAATAT
* *
119449806 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
119449835 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
119449864 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
119449882 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:119449849 original size:58 final size:58
Alignment explanation
Indices: 119449749--119449881 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
119449739 GTGACGAGAT
* * * * * *
119449749 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
119449807 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
119449865 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
119449882 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:119459992 original size:13 final size:13
Alignment explanation
Indices: 119459969--119460001 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
119459959 TTTGAGTCCC
*
119459969 TTTTA-TTTTTAT
1 TTTTATTTTTTAA
119459981 TTTTATTTTTTAA
1 TTTTATTTTTTAA
119459994 TTTTATTT
1 TTTTATTT
119460002 CCTTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:119460016 original size:19 final size:19
Alignment explanation
Indices: 119459970--119460016 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
119459960 TTGAGTCCCT
* *
119459970 TTTATTTTTATTTTTATTT
1 TTTATTTTTATTTCTATTA
*
119459989 TTTAATTTTATTTCCT-TTA
1 TTTATTTTTATTT-CTATTA
119460008 TTTATTTTT
1 TTTATTTTT
119460017 GAAGACTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTATTTTTATTTCTATTA
Found at i:119463415 original size:39 final size:39
Alignment explanation
Indices: 119463330--119463520 Score: 301
Period size: 39 Copynumber: 4.9 Consensus size: 39
119463320 TATGGTAACC
* * * *
119463330 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
119463370 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
119463409 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
* *
119463448 CGCACAATTGCCTTCGGGCTTAGCCCGGGTTTCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
119463487 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
119463521 CTCGAACATT
Statistics
Matches: 139, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 122 0.88
40 17 0.12
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:119470941 original size:39 final size:39
Alignment explanation
Indices: 119470856--119471045 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
119470846 TATGGTAACC
* * * *
119470856 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
119470896 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
119470935 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
119470974 CGCACAATTGCCTTCGGGCTTAGCCC-GATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
119471012 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
119471046 CTCGAACATT
Statistics
Matches: 141, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
38 38 0.27
39 86 0.61
40 17 0.12
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:119471042 original size:77 final size:78
Alignment explanation
Indices: 119470856--119471046 Score: 312
Period size: 77 Copynumber: 2.4 Consensus size: 78
119470846 TATGGTAACC
* *
119470856 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
*
119470921 CGGGTATCATAGCT
65 CGGATATCATAGCT
* * *
119470935 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
119471000 -GATATCATAGCT
66 GGATATCATAGCT
119471012 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
119471047 TCGAACATTC
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 44 0.42
78 44 0.42
79 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:119472807 original size:15 final size:15
Alignment explanation
Indices: 119472787--119472855 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
119472777 ATATCTTGGG
119472787 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
119472802 TCTCTTTATTCTGAA
1 TTTCTTTATCCTGGA
* *
119472817 ATTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
119472832 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
119472847 TTTCTTTAT
1 TTTCTTTAT
119472856 TCGGTTTCCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.16, C:0.17, G:0.10, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:119472852 original size:30 final size:30
Alignment explanation
Indices: 119472778--119472857 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
119472768 CATAGTATCA
* * *
119472778 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* * *
119472808 TAT-TCTGAAATTCTTTATTCTGGATTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
119472838 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
119472858 GGTTTCCTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 1 0.03
30 38 0.95
31 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.12, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:119475309 original size:46 final size:47
Alignment explanation
Indices: 119475259--119475431 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 47
119475249 TTGGGCATCC
119475259 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-TCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCT
* * * * *
119475305 GAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC-TCT
* * *
119475352 AAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCT
* * *
119475399 -AGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
119475432 GTGGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 54 0.53
47 27 0.26
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCT
Found at i:119475411 original size:93 final size:93
Alignment explanation
Indices: 119475252--119475424 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
119475242 AGGATGTTTG
* * * *
119475252 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCTGAACTCATTGAG
119475317 TTAAGTCCGAGTTCGTGAGATGTAACTA
66 TTAAGTCCGAGTTCGTGAGATGTAACTA
*
119475345 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCT-AGCTCATTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG-CCTGAACTCATTGA
*
119475409 GTTGAGTCCGAGTTCG
65 GTTAAGTCCGAGTTCG
119475425 CTTATGGGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 71 0.97
94 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCTGAACTCATTGAG
TTAAGTCCGAGTTCGTGAGATGTAACTA
Found at i:119480811 original size:39 final size:39
Alignment explanation
Indices: 119480768--119480846 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
119480758 CTCTATGATA
* * *
119480768 CTAAATTTATTGCATTGATAGATCCCAAGTCTACACATT
1 CTAAAGTTATTACATTGATAAATCCCAAGTCTACACATT
** *
119480807 CTAAAGTTATTACATTGATAAATCCCGGGTCTACTCATT
1 CTAAAGTTATTACATTGATAAATCCCAAGTCTACACATT
119480846 C
1 C
119480847 GTATATATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (39 bp):
CTAAAGTTATTACATTGATAAATCCCAAGTCTACACATT
Found at i:119499756 original size:40 final size:40
Alignment explanation
Indices: 119499690--119499856 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
119499680 AAATTGAATG
* * *
119499690 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
119499729 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
119499769 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
119499809 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
119499849 ATATCCGG
1 ATATCCGG
119499857 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:119503538 original size:40 final size:40
Alignment explanation
Indices: 119503472--119503622 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
119503462 AAATTGAATG
* * *
119503472 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
119503511 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
119503551 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
119503591 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
119503623 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:119514928 original size:79 final size:80
Alignment explanation
Indices: 119514785--119514992 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
119514775 ACCTTCGGAG
* * ** * * * *
119514785 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
119514849 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
119514864 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
119514926 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
119514943 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
119514993 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:119514937 original size:40 final size:40
Alignment explanation
Indices: 119514885--119514992 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
119514875 TATCACGATT
** *
119514885 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
119514925 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
119514965 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
119514993 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:119518045 original size:40 final size:39
Alignment explanation
Indices: 119518000--119518199 Score: 228
Period size: 40 Copynumber: 5.0 Consensus size: 39
119517990 CGGAATACAA
119518000 CCGGATATAATCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACACGCACGAATGCCTTCGGGTCTTAGC
** * *
119518040 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACACGCACGAATGCCTTCGGGTCTTAGC
*
119518080 CCGGATATAACA-ACTTCCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACACAC--GCACGAATGCCTTCGGGTCTTAGC
119518120 CCGGATATAACA-ACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACACAC--GCACGAATGCCTTCGGGTCTTAGC
* *
119518160 CCGGATGTAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAGC
1 CCGGATATA-ACAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
119518200 TCGGGTATCA
Statistics
Matches: 141, Mismatches: 12, Indels: 14
0.84 0.07 0.08
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 2 0.01
43 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:119518136 original size:80 final size:80
Alignment explanation
Indices: 119518000--119518199 Score: 273
Period size: 80 Copynumber: 2.5 Consensus size: 80
119517990 CGGAATACAA
*
119518000 CCGGATATA-ATCAC-ACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAA
1 CCGGATATAGA-CACTAC-CACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAA
119518063 TGCCTTCGGGTATTAGC
64 TGCCTTCGGGTATTAGC
* *
119518080 CCGGATATA-ACAACTTCCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACGAAT
1 CCGGATATAGAC-ACTACCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
119518144 GCCTTCGGGTCTTAGC
65 GCCTTCGGGTATTAGC
* * *
119518160 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAGC
1 CCGGATATAGACACTACCACGAA-TGCCTTCGGGTCTTAGC
119518200 TCGGGTATCA
Statistics
Matches: 108, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
79 3 0.03
80 103 0.95
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAGACACTACCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAATG
CCTTCGGGTATTAGC
Found at i:119520014 original size:51 final size:51
Alignment explanation
Indices: 119519951--119520076 Score: 171
Period size: 51 Copynumber: 2.5 Consensus size: 51
119519941 CAATTAAATC
* * * *
119519951 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
119520002 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
119520053 TCTAAGATTATAAAATCATATCTT
1 TCTAAGATTATAAAATCATATCTT
119520077 TCAAGATCAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:119523976 original size:31 final size:31
Alignment explanation
Indices: 119523938--119524032 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
119523928 CCTTTTCATA
*
119523938 TTTCATATTTCATAATACTGCGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
119523969 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
119524000 TTTCATATTTCATAGTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
119524031 TT
1 TT
119524033 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:119524270 original size:24 final size:24
Alignment explanation
Indices: 119524224--119524366 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
119524214 GCTTTATCAT
*
119524224 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
** * *
119524249 ATAACTAAGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
119524273 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
119524296 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
119524320 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
119524344 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
119524367 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 23 0.22
24 73 0.69
25 10 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:119524313 original size:47 final size:48
Alignment explanation
Indices: 119524224--119524365 Score: 180
Period size: 47 Copynumber: 3.0 Consensus size: 48
119524214 GCTTTATCAT
* ** *
119524224 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTAAGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
119524273 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* *
119524320 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
119524366 TTCACTTCCT
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
47 42 0.50
48 30 0.36
49 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:119524324 original size:71 final size:72
Alignment explanation
Indices: 119524223--119524366 Score: 193
Period size: 71 Copynumber: 2.0 Consensus size: 72
119524213 TGCTTTATCA
*
119524223 TATAACTGGAGGCCTAGCCTCTTTTAATAACTAAGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTAAGGCAAAAGCCCTTTCAATAACTGGGGCATAA
119524288 GCCCTTT
66 GCCCTTT
* ** * ** *
119524295 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTAAGGCAAAAGCCCTTTCAATAACTGGGGCATA
119524358 AGCCCTTT
65 AGCCCTTT
119524366 T
1 T
119524367 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 50 0.79
72 13 0.21
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTAAGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:119524442 original size:20 final size:20
Alignment explanation
Indices: 119524417--119524455 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
119524407 TATGATTACC
119524417 TCATGTGCATAGCATACATT
1 TCATGTGCATAGCATACATT
*
119524437 TCATGTGCATATCATACAT
1 TCATGTGCATAGCATACAT
119524456 ACCATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATAGCATACATT
Found at i:119524531 original size:25 final size:25
Alignment explanation
Indices: 119524499--119524546 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
119524489 ATACATAAAC
* * *
119524499 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
119524524 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
119524547 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:119525767 original size:27 final size:27
Alignment explanation
Indices: 119525705--119525769 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
119525695 GGGCATATTC
119525705 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
119525732 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
119525759 GTCTTTTTACC
1 GTCATTTTACC
119525770 TAATAGGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:119525853 original size:27 final size:27
Alignment explanation
Indices: 119525823--119525989 Score: 102
Period size: 27 Copynumber: 6.1 Consensus size: 27
119525813 GTAAATCTAC
*
119525823 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTAT
* * *
119525850 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACTAAGGGTATTTC-AGTAA-TTTTAT
* * * *
119525878 AAAGTTAAGGGTATTTCTGTAACTTTGT
1 AAA-CTAAGGGTATTTCAGTAATTTTAT
* * ** *
119525906 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTCAGTAATTTTAT
* * * * * *
119525933 AAATTGAGGGTTTTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCAGTAATTTTAT
* * *
119525960 AAACCAAGGGTATTTTAGTAATTTTCT
1 AAACTAAGGGTATTTCAGTAATTTTAT
119525987 AAA
1 AAA
119525990 TCGAGGGTAA
Statistics
Matches: 105, Mismatches: 31, Indels: 8
0.73 0.22 0.06
Matches are distributed among these distances:
27 78 0.74
28 14 0.13
29 13 0.12
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTAT
Found at i:119525996 original size:27 final size:26
Alignment explanation
Indices: 119525913--119525998 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
119525903 TGTAAATTAG
*
119525913 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTT-CAAATCGA
* * *
119525940 GGGT-TTTTCGGTAATTTCACAAACCAA
1 GGGTATTTT-GGTAATTT-TCAAATCGA
*
119525967 GGGTATTTTAGTAATTTTCTAAATCGA
1 GGGTATTTTGGTAATTTTC-AAATCGA
119525994 GGGTA
1 GGGTA
119525999 AAACAGTAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
26 5 0.11
27 38 0.81
28 4 0.09
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTCAAATCGA
Found at i:119526006 original size:27 final size:27
Alignment explanation
Indices: 119525976--119526110 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
119525966 AGGGTATTTT
* * *
119525976 AGTAATTTTCTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
*
119526003 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
119526030 AGTAATTCTATAAATCAATGGTAAAAT
1 AGTAATTCTATAAATCAAGGGTAAAAC
119526057 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
119526084 AGTAATTC-AGCAAATCGAGGGTAAAAC
1 AGTAATTCTA-TAAATCAAGGGTAAAAC
119526111 TATTCCAATA
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 96 0.99
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (27 bp):
AGTAATTCTATAAATCAAGGGTAAAAC
Found at i:119526035 original size:81 final size:81
Alignment explanation
Indices: 119525950--119526110 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
119525940 GGGTTTTTCG
*** * * * * *
119525950 GTAATT-TCACAAACCAAGGGTATTTTAGTAATTTTCTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTCT-ACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGC
119526014 AAATCAAGGGTAAAACA
65 AAATCAAGGGTAAAACA
* * *
119526031 GTAATTCTATAAATCAATGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGCA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGCA
*
119526096 AATCGAGGGTAAAAC
66 AATCAAGGGTAAAAC
119526111 TATTCCAATA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 66 0.99
82 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGCA
AATCAAGGGTAAAACA
Found at i:119526251 original size:27 final size:27
Alignment explanation
Indices: 119526221--119526541 Score: 441
Period size: 27 Copynumber: 11.9 Consensus size: 27
119526211 TATAAGTCGA
*
119526221 GGGTAAAACGATAATTATGTAAATTAG
1 GGGTAAAACGGTAATTATGTAAATTAG
119526248 GGGTAAAACGGTAATTATGTAAATTAG
1 GGGTAAAACGGTAATTATGTAAATTAG
* *
119526275 GGGTAAAACGGTAATTCTGTAAGTT-G
1 GGGTAAAACGGTAATTATGTAAATTAG
* *
119526301 AGGGTAAAACGATAATTATGTAAATCAG
1 -GGGTAAAACGGTAATTATGTAAATTAG
119526329 GGGTAAAACGGTAATTATGTAAATTAG
1 GGGTAAAACGGTAATTATGTAAATTAG
* * *
119526356 GGGTAAAACGGTAATTCTGT-AAGTCG
1 GGGTAAAACGGTAATTATGTAAATTAG
* *
119526382 AGGGTAAAACGATAATTATGTAAATCAG
1 -GGGTAAAACGGTAATTATGTAAATTAG
*
119526410 GGGTAAAACGATAATTATGTAAATTAG
1 GGGTAAAACGGTAATTATGTAAATTAG
* * *
119526437 GGGTAAAACGGTAATTCTGT-AAGTCG
1 GGGTAAAACGGTAATTATGTAAATTAG
* *
119526463 AGGGTAAAACGATAATTATGTAAATCAG
1 -GGGTAAAACGGTAATTATGTAAATTAG
119526491 GGGTAAAACGGTAATTATGTAAATTAG
1 GGGTAAAACGGTAATTATGTAAATTAG
*
119526518 GGGTAAAACGGTAATTCTGTAAAT
1 GGGTAAAACGGTAATTATGTAAAT
119526542 CGAGGGTACT
Statistics
Matches: 258, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 9 0.03
27 242 0.94
28 7 0.03
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (27 bp):
GGGTAAAACGGTAATTATGTAAATTAG
Found at i:119526571 original size:27 final size:27
Alignment explanation
Indices: 119526538--119526644 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
119526528 GTAATTCTGT
119526538 AAATCGAGGGTACTTT-AGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* * * *
119526565 AAGTCGAAGGTATTTCGGTAAATTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
119526592 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
119526619 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
119526645 GTAAACTAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.06
27 62 0.94
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:119526584 original size:54 final size:53
Alignment explanation
Indices: 119526538--119526642 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
119526528 GTAATTCTGT
*
119526538 AAATCGAGGGTACTTT-AGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
119526592 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
119526643 TAGTAAACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
53 11 0.24
54 35 0.76
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:119526585 original size:81 final size:81
Alignment explanation
Indices: 119526199--119526549 Score: 657
Period size: 81 Copynumber: 4.3 Consensus size: 81
119526189 GTTGAAGTTG
* *
119526199 AAACGGTAATTCTATAAGTCGAGGGTAAAACGATAATTATGTAAATTAGGGGTAAAACGGTAATT
1 AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
119526264 ATGTAAATTAGGGGTA
66 ATGTAAATTAGGGGTA
*
119526280 AAACGGTAATTCTGTAAGTTGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
1 AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
119526345 ATGTAAATTAGGGGTA
66 ATGTAAATTAGGGGTA
*
119526361 AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGATAATT
1 AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
119526426 ATGTAAATTAGGGGTA
66 ATGTAAATTAGGGGTA
119526442 AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
1 AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
119526507 ATGTAAATTAGGGGTA
66 ATGTAAATTAGGGGTA
*
119526523 AAACGGTAATTCTGTAAATCGAGGGTA
1 AAACGGTAATTCTGTAAGTCGAGGGTA
119526550 CTTTAGTAAT
Statistics
Matches: 263, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 263 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (81 bp):
AAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATT
ATGTAAATTAGGGGTA
Found at i:119526658 original size:27 final size:27
Alignment explanation
Indices: 119526554--119526659 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
119526544 AGGGTACTTT
* *
119526554 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* * * *
119526581 GGTAAATTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
119526608 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
119526635 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
119526660 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:119528618 original size:26 final size:26
Alignment explanation
Indices: 119528589--119528641 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
119528579 ATATATAAGA
119528589 TAATATGATATTGCCATAATCATGAC
1 TAATATGATATTGCCATAATCATGAC
119528615 TAATATGATATTGCCATAATCATGAC
1 TAATATGATATTGCCATAATCATGAC
119528641 T
1 T
119528642 TGTTTGAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (26 bp):
TAATATGATATTGCCATAATCATGAC
Found at i:119529513 original size:23 final size:23
Alignment explanation
Indices: 119529478--119529541 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
119529468 GTACCATTTT
119529478 AGCTC-ATATGAGCTTACTGTTTC
1 AGCTCAATA-GAGCTTACTGTTTC
** *
119529501 AGCTCGTTAGAGCTTACCGTTTC
1 AGCTCAATAGAGCTTACTGTTTC
*
119529524 AGCTTAATAGAGCTTACT
1 AGCTCAATAGAGCTTACT
119529542 ATCCATCGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 32 0.94
24 2 0.06
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (23 bp):
AGCTCAATAGAGCTTACTGTTTC
Found at i:119529537 original size:46 final size:46
Alignment explanation
Indices: 119529429--119529541 Score: 113
Period size: 46 Copynumber: 2.4 Consensus size: 46
119529419 TACCAATATA
* * *
119529429 TCAGCTCATAAGAGCTTATTGTTTTCACCTCGTTGGAGTGTACCATT
1 TCAGCTAAT-AGAGCTTACTGTTTTCACCTCGTTAGAGTGTACCATT
* * * *
119529476 TTAGCTCATATGAGCTTACTG-TTTCAGCTCGTTAGAGCT-TACCGTT
1 TCAGCTAATA-GAGCTTACTGTTTTCACCTCGTTAGAG-TGTACCATT
119529522 TCAGCTTAATAGAGCTTACT
1 TCAGC-TAATAGAGCTTACT
119529542 ATCCATCGGC
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
46 34 0.61
47 22 0.39
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (46 bp):
TCAGCTAATAGAGCTTACTGTTTTCACCTCGTTAGAGTGTACCATT
Found at i:119530956 original size:16 final size:17
Alignment explanation
Indices: 119530925--119530958 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
119530915 AGGGACAAAT
*
119530925 TGATTGATATGGATTGA
1 TGATTGATATGAATTGA
119530942 TGATT-ATATGAATTGA
1 TGATTGATATGAATTGA
119530958 T
1 T
119530959 CGAATGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (17 bp):
TGATTGATATGAATTGA
Found at i:119537753 original size:30 final size:29
Alignment explanation
Indices: 119537717--119537773 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
119537707 ATAGTATCGT
*
119537717 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
119537747 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
119537774 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:119539582 original size:27 final size:28
Alignment explanation
Indices: 119539517--119539586 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
119539507 AAATTTGTAC
119539517 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119539545 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119539572 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
119539587 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:119539597 original size:27 final size:27
Alignment explanation
Indices: 119539517--119539598 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
119539507 AAATTTGTAC
* *
119539517 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
119539545 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
119539572 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
119539599 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:119545200 original size:27 final size:28
Alignment explanation
Indices: 119545135--119545204 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
119545125 AAATTTGTAC
119545135 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119545163 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119545190 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
119545205 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:119545215 original size:27 final size:27
Alignment explanation
Indices: 119545135--119545216 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
119545125 AAATTTGTAC
* *
119545135 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
119545163 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
119545190 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
119545217 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:119550811 original size:27 final size:28
Alignment explanation
Indices: 119550746--119550815 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
119550736 AAATTTGTAC
119550746 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119550774 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119550801 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
119550816 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:119550826 original size:27 final size:27
Alignment explanation
Indices: 119550746--119550827 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
119550736 AAATTTGTAC
* *
119550746 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
119550774 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
119550801 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
119550828 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:119556421 original size:27 final size:28
Alignment explanation
Indices: 119556356--119556425 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
119556346 AAATTTGTAC
119556356 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119556384 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
119556411 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
119556426 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:119556436 original size:27 final size:27
Alignment explanation
Indices: 119556356--119556437 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
119556346 AAATTTGTAC
* *
119556356 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
119556384 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
119556411 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
119556438 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:119564209 original size:23 final size:23
Alignment explanation
Indices: 119564183--119564247 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
119564173 CAGATTGTTG
119564183 GAGCTTACCGTTTCAGCTCGT-A
1 GAGCTTACCGTTTCAGCTCGTCA
* *
119564205 TGAGCTTACTGTTTCAACTCGTCA
1 -GAGCTTACCGTTTCAGCTCGTCA
*
119564229 CAGCTTACCGTTTCAGCTC
1 GAGCTTACCGTTTCAGCTC
119564248 TATATAGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.34
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCGTCA
Found at i:119565822 original size:55 final size:55
Alignment explanation
Indices: 119565734--119565839 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
119565724 TTAAGTCCGG
* *
119565734 TAATGCTCTGTAACCCTATTCCAGCATTGAATACTG-GTGAGAGGTGTTACACCGA
1 TAATGCTCCGTAACCCTATTCCAGCATTAAATAC-GAGTGAGAGGTGTTACACCGA
** ** *
119565789 TAATGCTCCGTAACCCTATTCTGGTGTTAAATACGAGTGAGGGGTGTTACA
1 TAATGCTCCGTAACCCTATTCCAGCATTAAATACGAGTGAGAGGTGTTACA
119565840 AGCTAGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 1 0.02
55 42 0.98
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (55 bp):
TAATGCTCCGTAACCCTATTCCAGCATTAAATACGAGTGAGAGGTGTTACACCGA
Found at i:119568773 original size:29 final size:29
Alignment explanation
Indices: 119568739--119568816 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
119568729 GTGACGAGAT
* *
119568739 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
119568768 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
119568797 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
119568817 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:119573001 original size:17 final size:17
Alignment explanation
Indices: 119572979--119573012 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119572969 TACTAGACAA
119572979 CCCAATATTCTAAAGTG
1 CCCAATATTCTAAAGTG
*
119572996 CCCAATATTCTGAAGTG
1 CCCAATATTCTAAAGTG
119573013 ACTTAGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (17 bp):
CCCAATATTCTAAAGTG
Found at i:119574681 original size:28 final size:27
Alignment explanation
Indices: 119574618--119574687 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
119574608 ATAGTGAGTC
119574618 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
119574645 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
119574673 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
119574688 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:119590272 original size:40 final size:40
Alignment explanation
Indices: 119590244--119590396 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
119590234 TTATAGTGAT
*
119590244 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAAC
* * * *
119590284 TCGCACGAATGCCTTCGGGACTTAACCCGG-TTTTGATAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAG-TAAC
*
119590324 TCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAGTAAC
* * *
119590364 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTAGCCCGGAT
119590397 ACCATTCGAA
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
39 4 0.04
40 59 0.62
41 31 0.33
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAAC
Found at i:119590328 original size:80 final size:81
Alignment explanation
Indices: 119590244--119590394 Score: 225
Period size: 80 Copynumber: 1.9 Consensus size: 81
119590234 TTATAGTGAT
* * * *
119590244 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAGTAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTT
119590307 AACCCGGTTTTGATAAC
65 AACCCGGTTTTGATAAC
*
119590324 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
*
119590389 GCCCGG
66 ACCCGG
119590395 ATACCATTCG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 36 0.57
81 27 0.43
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGGTTTTGATAAC
Found at i:119591103 original size:2 final size:2
Alignment explanation
Indices: 119591096--119591128 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
119591086 ATGTGCAAAC
119591096 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119591129 GCTAGAGCCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119595983 original size:30 final size:29
Alignment explanation
Indices: 119595949--119596015 Score: 107
Period size: 30 Copynumber: 2.3 Consensus size: 29
119595939 ATGAATCGGA
* *
119595949 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGAACTAAGAGTGCGATTT-AACT
119595979 AGCTTTGGAACTAAGAGTGCGATTTAACT
1 AGCTTTGGAACTAAGAGTGCGATTTAACT
119596008 AGCTTTGG
1 AGCTTTGG
119596016 TTACTTGAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 12 0.34
30 23 0.66
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (29 bp):
AGCTTTGGAACTAAGAGTGCGATTTAACT
Found at i:119598503 original size:27 final size:24
Alignment explanation
Indices: 119598473--119598542 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
119598463 CGAATGGGGC
*
119598473 AGCACTATGTGTGCGTATGGAAAAGCT
1 AGCACTATGTGTGCGAAT-GAAAA--T
*
119598500 AGCACTATGTGTGCGAATGAATAT
1 AGCACTATGTGTGCGAATGAAAAT
119598524 ATGCACTATGTGTGCGAAT
1 A-GCACTATGTGTGCGAAT
119598543 TTATTAACTG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 2 0.05
25 17 0.43
26 4 0.10
27 17 0.43
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (24 bp):
AGCACTATGTGTGCGAATGAAAAT
Found at i:119598529 original size:25 final size:26
Alignment explanation
Indices: 119598451--119598568 Score: 102
Period size: 23 Copynumber: 4.6 Consensus size: 26
119598441 AATGAAAAGG
**
119598451 GCACTATGTGTGCGAATGG--GGC-A
1 GCACTATGTGTGCGAATGGAAAACTA
*
119598474 GCACTATGTGTGCGTATGGAAAAGCTA
1 GCACTATGTGTGCGAATGGAAAA-CTA
*
119598501 GCACTATGTGTGCGAAT-GAATA-TA
1 GCACTATGTGTGCGAATGGAAAACTA
** *
119598525 TGCACTATGTGTGCGAATTTATTAACTGA
1 -GCACTATGTGTGCGAATGGA-AAACT-A
119598554 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
119598569 GATCGGTTGT
Statistics
Matches: 78, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
23 18 0.23
24 2 0.03
25 17 0.22
26 6 0.08
27 18 0.23
28 16 0.21
29 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTATGTGTGCGAATGGAAAACTA
Found at i:119602896 original size:24 final size:24
Alignment explanation
Indices: 119602844--119603032 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
119602834 GCTTTATCAT
*
119602844 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
119602869 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
119602893 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
119602916 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
119602940 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
119602964 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
119602988 ATAACTGGGGCATAAG-CC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
119603010 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
119603033 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
22 19 0.12
23 26 0.17
24 96 0.63
25 12 0.08
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:119602985 original size:48 final size:47
Alignment explanation
Indices: 119602865--119603032 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
119602855 CCTAGCCTCT
* *
119602865 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
119602912 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
119602959 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG-CC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
119603006 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
119603033 TCACTTCCTC
Statistics
Matches: 116, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
46 26 0.22
47 47 0.41
48 43 0.37
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:119603192 original size:25 final size:25
Alignment explanation
Indices: 119603146--119603193 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
119603136 ATATATAAAC
* * * *
119603146 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
119603171 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
119603194 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:119604453 original size:27 final size:27
Alignment explanation
Indices: 119604432--119604776 Score: 302
Period size: 27 Copynumber: 12.8 Consensus size: 27
119604422 AAGGGTATTT
*
119604432 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
119604459 CAGTAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
119604486 CAATAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
119604513 TGGTAATTCTGTAAATCGAGGGTGAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
119604540 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
119604567 -CGATAATTATGTAAATTGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * *
119604594 CGGTAATTATGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
119604621 -CGATAATTATGTAAATTGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** *
119604648 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
119604675 TAGTAATTCTGTAAA-CTAAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
119604702 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * ** *
119604729 -CGTTAATTTTACAAATTGAGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** *
119604756 CGGTAATTCTATAAATCGAGG
1 TAGTAATTCTGTAAATCGAGG
119604777 ATACTTTGGT
Statistics
Matches: 269, Mismatches: 41, Indels: 16
0.83 0.13 0.05
Matches are distributed among these distances:
26 4 0.01
27 261 0.97
28 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:119604479 original size:54 final size:54
Alignment explanation
Indices: 119604434--119604776 Score: 377
Period size: 54 Copynumber: 6.4 Consensus size: 54
119604424 GGGTATTTTA
* * *
119604434 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTATGTAAATCAAGGGTAAAACG
* * * * * * * *
119604488 ATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTGAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACG
***
119604542 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACG
* * ***
119604596 GTAATTATGTAAATTGAGGGTAAAACGATAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACG
* * *
119604650 GTAATTCTATAAATCGAGGGTAAAA-TAGTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTATGTAAATC-AAGGGTAAAACG
* * ** **
119604704 GTAATTCTGTAAATCGAGGGTAAAACGTTAATTTTACAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACG
*
119604758 GTAATTCTATAAATCGAGG
1 GTAATTCTGTAAATCGAGG
119604777 ATACTTTGGT
Statistics
Matches: 246, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.00
54 245 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACG
Found at i:119604789 original size:81 final size:81
Alignment explanation
Indices: 119604434--119604776 Score: 427
Period size: 81 Copynumber: 4.2 Consensus size: 81
119604424 GGGTATTTTA
* * * * *
119604434 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
*
119604499 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* * * *
119604515 GTAATTCTGTAAATCGAGGGTGAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
* *
119604580 AATTGGGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * * * *
119604596 GTAATTATGTAAATTGAGGGTAAAACGATAATTATGTAAATTGGGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
**
119604661 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAACG
* * * *
119604677 GTAATTCTGTAAA-CTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGTTAATTTTAC
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTAT
*
119604741 AAATTGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
*
119604758 GTAATTCTATAAATCGAGG
1 GTAATTCTGTAAATCGAGG
119604777 ATACTTTGGT
Statistics
Matches: 218, Mismatches: 42, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
81 217 1.00
82 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
AATCGAGGGTAAAACG
Found at i:119604844 original size:27 final size:27
Alignment explanation
Indices: 119604785--119604877 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
119604775 GGATACTTTG
*
119604785 GTAATGTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
*
119604812 ATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* * * **
119604839 GTAATTTCACAAAT-TAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTCA
119604866 GTAATTTTACAA
1 GTAATTTTACAA
119604878 ACTAGGGGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTCA
Found at i:119604878 original size:27 final size:27
Alignment explanation
Indices: 119604829--119605007 Score: 227
Period size: 27 Copynumber: 6.7 Consensus size: 27
119604819 TACAAGTCGA
** * *
119604829 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
119604856 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
119604883 GGGTATTTTGATAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
119604910 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
119604937 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
119604964 TGGTATTTTAGCAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
119604990 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
119605008 GTAAACCAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 15 0.11
27 117 0.88
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:119604969 original size:81 final size:80
Alignment explanation
Indices: 119604781--119605007 Score: 235
Period size: 81 Copynumber: 2.8 Consensus size: 80
119604771 TCGAGGATAC
* ** * * ** **
119604781 TTTGGTAATGTTACAAGTCGAGGGTATTTCAATAATTTTAC-AAGTCGAGGGTATTTCAGTAATT
1 TTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAAG-C-AGGGTATTTTGGTAATT
* *
119604845 TCACAAATTAGGGGTAT
64 TTACAAACTAGGGGTAT
* * * *
119604862 TTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTATAAA-CTAGGGGTATTTTGGTAAT
1 TTTGGTAATTTTACAAACCAAGGGTATTTTAG-CAATTTTACAAAGC-A-GGGTATTTTGGTAAT
119604925 TTTACAAACTAGGGGTAT
63 TTTACAAACTAGGGGTAT
* *
119604943 TTTGGTAATTTTATAAACCAATGGTATTTTAGCAATTTTACAAAGCAGGGTATTTTGGTAATTTT
1 TTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAAGCAGGGTATTTTGGTAATTTT
119605008 GTAAACCAAA
Statistics
Matches: 121, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
80 20 0.17
81 97 0.80
82 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (80 bp):
TTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAAGCAGGGTATTTTGGTAATTTT
ACAAACTAGGGGTAT
Found at i:119607752 original size:31 final size:31
Alignment explanation
Indices: 119607711--119607774 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
119607701 CCTTTTCATA
*
119607711 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
119607742 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
119607773 TT
1 TT
119607775 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:119608020 original size:24 final size:24
Alignment explanation
Indices: 119607968--119608157 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
119607958 GCTTTATCAT
*
119607968 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
119607993 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
119608017 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
119608040 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
119608064 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
119608088 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
119608112 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
119608135 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
119608158 TCACTTCCTC
Statistics
Matches: 155, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 44 0.28
24 99 0.64
25 12 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:119608044 original size:47 final size:48
Alignment explanation
Indices: 119607967--119608158 Score: 300
Period size: 47 Copynumber: 4.0 Consensus size: 48
119607957 TGCTTTATCA
* *
119607967 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
119608016 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
119608063 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
119608111 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
119608158 T
1 T
119608159 CACTTCCTCC
Statistics
Matches: 135, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 71 0.53
48 51 0.38
49 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:119608068 original size:71 final size:72
Alignment explanation
Indices: 119607968--119608158 Score: 298
Period size: 71 Copynumber: 2.7 Consensus size: 72
119607958 GCTTTATCAT
* *
119607968 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
119608032 GCCC-TTTA
64 GCCCTTTTA
* *
119608040 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
119608105 CCTTTTG
66 CCTTTTA
119608112 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
119608159 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
71 76 0.69
72 34 0.31
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:119608310 original size:25 final size:25
Alignment explanation
Indices: 119608271--119608318 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
119608261 ATATATAAAC
* * *
119608271 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
119608296 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
119608319 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:119609588 original size:20 final size:20
Alignment explanation
Indices: 119609563--119609606 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
119609553 TTAGTAATTT
*
119609563 TGTAAATCGAGGGTAAAACA
1 TGTAAATCAAGGGTAAAACA
119609583 TGTAAATCAAGGGTAAAACA
1 TGTAAATCAAGGGTAAAACA
119609603 -GTAA
1 TGTAA
119609607 TTCTATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.48, C:0.09, G:0.23, T:0.20
Consensus pattern (20 bp):
TGTAAATCAAGGGTAAAACA
Found at i:119609615 original size:27 final size:27
Alignment explanation
Indices: 119609583--119609863 Score: 359
Period size: 27 Copynumber: 10.4 Consensus size: 27
119609573 GGGTAAAACA
* *
119609583 TGTAAATCAAGGGTAAAACAGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* *
119609610 TATAAATCGAGGGTAAAATGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
119609637 TGTAAATCGAGGGTGAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* * *
119609664 TGTAAATCGAGGGTAAAACGATGATTA
1 TGTAAATCGAGGGTAAAACGGTAATTC
* *
119609691 TGTAAATTG-GGGTAAAACGGTAATTA
1 TGTAAATCGAGGGTAAAACGGTAATTC
* *
119609717 TGTAAATTGGGGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* **
119609744 TATAAATCGAGGGTAAAATAGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
119609771 TGTAAA-CTAAGGGTAAAACGGTAATTC
1 TGTAAATC-GAGGGTAAAACGGTAATTC
*
119609798 TGTAAATCGAGGGTAAAACGGTAATTT
1 TGTAAATCGAGGGTAAAACGGTAATTC
**
119609825 TACAAATCGAGGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
119609852 TATAAATCGAGG
1 TGTAAATCGAGG
119609864 ATACTTTGGT
Statistics
Matches: 221, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.11
27 195 0.88
28 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACGGTAATTC
Found at i:119609752 original size:134 final size:135
Alignment explanation
Indices: 119609593--119609850 Score: 403
Period size: 134 Copynumber: 1.9 Consensus size: 135
119609583 TGTAAATCAA
* * *
119609593 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTGAAACG
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACT-AAGGGTAAAACG
* ** *
119609657 GTAATTCTGTAAATCGAGGGTAAAACGATGATTATGTAAATTG-GGGTAAAACGGTAATTATGTA
65 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATACAAATCGAGGGTAAAACGGTAATTATGTA
119609721 AATTGG
130 AATTGG
*
119609727 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTAAGGGTAAAACGG
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTAAGGGTAAAACGG
* *
119609792 TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATT
66 TAATTCTGTAAATCGAGGGTAAAACGATAATTATACAAATCGAGGGTAAAACGGTAATT
119609851 CTATAAATCG
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
134 95 0.85
135 17 0.15
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.28
Consensus pattern (135 bp):
GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTAAGGGTAAAACGG
TAATTCTGTAAATCGAGGGTAAAACGATAATTATACAAATCGAGGGTAAAACGGTAATTATGTAA
ATTGG
Found at i:119609888 original size:27 final size:26
Alignment explanation
Indices: 119609817--119610094 Score: 179
Period size: 27 Copynumber: 10.3 Consensus size: 26
119609807 AGGGTAAAAC
***
119609817 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGT-ATTT
* * *
119609844 GGTAATTCTATAAATCGAGGATACTTT
1 GGTAATTTTACAAATCGAGGGTA-TTT
*
119609871 GGTAATTTTACAAGTCGAGGGTATTT
1 GGTAATTTTACAAATCGAGGGTATTT
** **
119609897 CAATAATTTTACAGGTCGAGGGTATTT
1 -GGTAATTTTACAAATCGAGGGTATTT
* * *
119609924 CAGTAATTTCACAAAT-TAGGGGTATTTT
1 -GGTAATTTTACAAATCGA-GGGTA-TTT
*
119609952 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTA-TTT
* *
119609979 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTA-TTT
*
119610006 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTA-TTT
* * * *
119610033 GGTAATTTTATAAACCAATGGTATTTT
1 GGTAATTTTACAAATCGAGGGTA-TTT
* *
119610060 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTA-TTT
119610086 GGTAATTTT
1 GGTAATTTT
119610095 GTAAACCAAA
Statistics
Matches: 215, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
26 22 0.10
27 188 0.87
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
GGTAATTTTACAAATCGAGGGTATTT
Found at i:119609953 original size:81 final size:81
Alignment explanation
Indices: 119609868--119610073 Score: 227
Period size: 81 Copynumber: 2.5 Consensus size: 81
119609858 TCGAGGATAC
* **
119609868 TTTGGTAATTTTACAAGTCGA-GGGTATTTCAATAATTTTACAGGTCGA-GGGTATTTCAGTAAT
1 TTTGGTAATTTTACAA-ACGAGGGGTATTTCAATAATTTTACA-AACGAGGGGTATTTCAGTAAT
*
119609931 TTCACAAATTAGGGGTAT
64 TTCACAAACTAGGGGTAT
* ** * **
119609949 TTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACGAGGGGTATTTCAATAATTTTACAAACGAGGGGTATTTCAGTAATTT
*
119610014 TACAAACTAGGGGTAT
66 CACAAACTAGGGGTAT
* * ** * *
119610030 TTTGGTAATTTTATAAACCAATGGTATTTTAGTAATTTTACAAA
1 TTTGGTAATTTTACAAACGAGGGGTATTTCAATAATTTTACAAA
119610074 GCAGGGTATT
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
80 4 0.04
81 102 0.96
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
TTTGGTAATTTTACAAACGAGGGGTATTTCAATAATTTTACAAACGAGGGGTATTTCAGTAATTT
CACAAACTAGGGGTAT
Found at i:119610108 original size:26 final size:26
Alignment explanation
Indices: 119609944--119610111 Score: 174
Period size: 27 Copynumber: 6.3 Consensus size: 26
119609934 ACAAATTAGG
* *
119609944 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
119609971 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
119609998 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
119610025 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
119610051 TGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
119610078 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
119610104 AGTATTTT
1 GGTATTTT
119610112 AAACATGGAT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 28 0.22
27 97 0.78
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:119613443 original size:43 final size:43
Alignment explanation
Indices: 119613395--119613530 Score: 129
Period size: 43 Copynumber: 3.2 Consensus size: 43
119613385 CTGGCAATAA
*
119613395 GCCTGCTAGACCTTTAAGTTCGATATCATTTCACCAGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTAC
* ** *
119613438 GCCTGCTAG-GCTCGAAG-CCTGATA--ATATTCACCAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTCC-GATATCAT-TTCACCAGCATT-AC
* *
119613479 GCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTAC
* *
119613522 ACCTTCTAG
1 GCCTGCTAG
119613531 GCTCAAAGGC
Statistics
Matches: 71, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
40 4 0.06
41 19 0.27
42 18 0.25
43 26 0.37
44 4 0.06
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTAC
Found at i:119613570 original size:84 final size:84
Alignment explanation
Indices: 119613378--119613571 Score: 225
Period size: 84 Copynumber: 2.3 Consensus size: 84
119613368 ATAACCTGAT
* * *
119613378 TTCATCACTGGCAATAAGCCTGCTAGACCTTTAAGTTCGATATCATTTCACCAGCATTACGCCTG
1 TTCATCACCGGCAA-AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTACACCTG
*
119613443 CTAGGCTCGAAGCCTGATAA
65 CTAGGCTCAAAGCCTGATAA
* * * *
119613463 -T-ATTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACACCT
1 TTCA-TCACCGGC-AAAAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTACACCT
*
119613526 TCTAGGCTCAAAGGCC-GA-AA
64 GCTAGGCTCAAA-GCCTGATAA
*
119613546 TTCATCACCGGCACAAGGCCTGCTAG
1 TTCATCACCGGCA-AAAGCCTGCTAG
119613572 GTTTGAAAGC
Statistics
Matches: 90, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
83 3 0.03
84 82 0.91
85 5 0.06
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (84 bp):
TTCATCACCGGCAAAAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTACACCTGC
TAGGCTCAAAGCCTGATAA
Found at i:119614322 original size:22 final size:22
Alignment explanation
Indices: 119614291--119614333 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
119614281 ATCACTCTTC
119614291 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCTTTTATTTTTCTTTTT
* *
119614313 CTCTCGTTTTGTTTTTCTTTT
1 CTCTCCTTTTATTTTTCTTTT
119614334 CTTCTTCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.72
Consensus pattern (22 bp):
CTCTCCTTTTATTTTTCTTTTT
Found at i:119615652 original size:27 final size:26
Alignment explanation
Indices: 119615573--119615680 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
119615563 AGGAAGCGTC
* *
119615573 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
119615600 CTGATGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
119615627 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * * *
119615655 TTGGTGACTCTGTCACATTTTCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
119615681 TTGGCAGCCA
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.04
27 49 0.72
28 16 0.24
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.40
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:119615677 original size:54 final size:54
Alignment explanation
Indices: 119615573--119615680 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
119615563 AGGAAGCGTC
*
119615573 CTGGTGGCTATGCCACAATTATCTGATCTGATGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATATTTCTGTT
* * * * *
119615627 CTGGTGGCTCTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGATGACTCTGCCACATATTTCTGTT
119615681 TTGGCAGCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 31 0.66
55 16 0.34
ACGTcount: A:0.16, C:0.23, G:0.21, T:0.40
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATATTTCTGTT
Found at i:119623114 original size:40 final size:40
Alignment explanation
Indices: 119623010--119623215 Score: 321
Period size: 40 Copynumber: 5.2 Consensus size: 40
119623000 GGATTGATAC
*
119623010 CCGGGCTAAGTCCCGAAGGCATTT-TGCGAATTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
119623049 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
119623088 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
119623128 CCGGGCTAAGTCCGGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
119623168 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
119623208 CC-GGCTAA
1 CCGGGCTAA
119623216 ACTCCGAAGG
Statistics
Matches: 157, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 13 0.08
39 42 0.27
40 102 0.65
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.