Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 389 of 770
Found at i:119630395 original size:40 final size:40
Alignment explanation
Indices: 119630291--119630496 Score: 321
Period size: 40 Copynumber: 5.2 Consensus size: 40
119630281 GGATTGATAA
*
119630291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
119630330 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
119630369 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
119630409 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
119630449 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
119630489 CC-GGCTAA
1 CCGGGCTAA
119630497 ACTCCGAAGG
Statistics
Matches: 157, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 25 0.16
39 29 0.18
40 103 0.66
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:119633193 original size:43 final size:43
Alignment explanation
Indices: 119633145--119633277 Score: 141
Period size: 43 Copynumber: 3.1 Consensus size: 43
119633135 ACAATAAGTT
*
119633145 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCC
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTACGCC
* ** * *
119633188 TGCTAG-GCTCGAAGCCCGATA--ATATTCACCAGC-TTAAAG-C
1 TGCTAGACCTTTAAGTCCGATATCAT-TTCACCAGCATT-ACGCC
*
119633228 TCGCTAGACCTTTAAGTTCGATATCATTTCACCAGCATTACGCC
1 T-GCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTACGCC
119633272 TGCTAG
1 TGCTAG
119633278 GCTCAAAGGC
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
40 6 0.09
41 15 0.21
42 21 0.30
43 22 0.31
44 6 0.09
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (43 bp):
TGCTAGACCTTTAAGTCCGATATCATTTCACCAGCATTACGCC
Found at i:119633208 original size:42 final size:42
Alignment explanation
Indices: 119633161--119633290 Score: 115
Period size: 42 Copynumber: 3.1 Consensus size: 42
119633151 ACCTTTAAGT
* *
119633161 CCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAGC
1 CCGATATCATTTCACCAGCATTACGCCTGCTAGGCTCAAAGC
* * ** *
119633203 CCGATA--ATATTCACCAGC-TTAAAG-CTCGCTAGACCTTTAAGT
1 CCGATATCAT-TTCACCAGCATT-ACGCCT-GCTAG-GCTCAAAGC
* *
119633245 TCGATATCATTTCACCAGCATTACGCCTGCTAGGCTCAAAGG
1 CCGATATCATTTCACCAGCATTACGCCTGCTAGGCTCAAAGC
119633287 CCGA
1 CCGA
119633291 AATTCATCAC
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
40 6 0.09
41 15 0.22
42 24 0.36
43 16 0.24
44 6 0.09
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (42 bp):
CCGATATCATTTCACCAGCATTACGCCTGCTAGGCTCAAAGC
Found at i:119636504 original size:40 final size:39
Alignment explanation
Indices: 119636447--119636630 Score: 158
Period size: 40 Copynumber: 4.6 Consensus size: 39
119636437 TCGAATGATG
119636447 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTGACTAAA
* * * *
119636487 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTGACTAAA
* * * * *
119636527 TCCGGGCTAAGCCCGAAGGCA-TGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTAAA
* ** *
119636565 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTA-AA
* *
119636606 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
119636631 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 24 0.20
39 18 0.15
40 70 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:119636582 original size:78 final size:80
Alignment explanation
Indices: 119636447--119636624 Score: 220
Period size: 78 Copynumber: 2.2 Consensus size: 80
119636437 TCGAATGATG
* *
119636447 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
119636512 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
119636526 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
119636588 TTGTGTGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
119636605 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
119636625 TATTTGAACG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 50 0.59
79 23 0.27
80 11 0.13
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:119637344 original size:18 final size:18
Alignment explanation
Indices: 119637323--119637361 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
119637313 GCAAAAAGGG
119637323 CTAATTGAATCATGGAAA
1 CTAATTGAATCATGGAAA
119637341 CTAATTGAATCATGGAAA
1 CTAATTGAATCATGGAAA
119637359 CTA
1 CTA
119637362 TGAAATAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (18 bp):
CTAATTGAATCATGGAAA
Found at i:119638565 original size:14 final size:15
Alignment explanation
Indices: 119638536--119638565 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
119638526 CAAAATTAGG
119638536 ACATGATACTTTCAC
1 ACATGATACTTTCAC
119638551 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
119638565 A
1 A
119638566 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:119643345 original size:27 final size:27
Alignment explanation
Indices: 119643323--119643471 Score: 199
Period size: 27 Copynumber: 5.5 Consensus size: 27
119643313 AGTACCTTCG
* *
119643323 ATTTACAAAATTACTGTTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCA
*
119643350 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCA
* *
119643377 ATTTATAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCA
* * * **
119643404 ATTTACGGAATTATCATTTTACCCTTT
1 ATTTACAGAATTACCGTTTTACCCTCA
119643431 ATTTACAGAATTACCGTTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCA
*
119643458 ATTTACAAAATTAC
1 ATTTACAGAATTAC
119643472 TAAAATACCT
Statistics
Matches: 105, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCA
Found at i:119643352 original size:54 final size:54
Alignment explanation
Indices: 119643291--119643499 Score: 186
Period size: 54 Copynumber: 3.9 Consensus size: 54
119643281 ACTAAAATAT
** * *
119643291 CCTCAATTTGTAAAATTACCAAAGTACCTTCGATTTACAAAATTACTGTTTTAC
1 CCTCAATTTACAAAATTACCAAATTACCTTCGATTTACAAAATTACCGTTTTAC
* *** * * * *
119643345 CCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
1 CCTCAATTTACAAAATTACCAAATTACCTTCGATTTACAAAATTACCGTTTTAC
** * ** * *
119643399 CCTCAATTTACGGAATTATCATTTTACCCTT-TATTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAAAATTACCAAATTA-CCTTCGATTTACAAAATTACCGTTTTAC
* * * * *
119643453 CCTCAATTTACAAAATTACTAAAATACCTTTGGTTTATAAAATTACC
1 CCTCAATTTACAAAATTACCAAATTACCTTCGATTTACAAAATTACC
119643500 AAAATACCCC
Statistics
Matches: 123, Mismatches: 30, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
53 4 0.03
54 116 0.94
55 3 0.02
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (54 bp):
CCTCAATTTACAAAATTACCAAATTACCTTCGATTTACAAAATTACCGTTTTAC
Found at i:119643497 original size:81 final size:81
Alignment explanation
Indices: 119643291--119643498 Score: 229
Period size: 81 Copynumber: 2.6 Consensus size: 81
119643281 ACTAAAATAT
* * *
119643291 CCTCAATTTGTAAAATTACCAAAGTACCTTCGATTTACAAAATTACTGTTTTACCCTCAATTTAC
1 CCTCAATTTATAAAATTACCAAAATACCTTCGATTTACAAAATTACTATTTTACCCTCAATTTAC
119643356 AGAATTACCGTTTTAC
66 AGAATTACCGTTTTAC
* * *** * * ** **
119643372 CCTCGATTTATAGAATTACCATTTTACCCTCAATTTACGGAATTA-TCATTTTACCCTTTATTTA
1 CCTCAATTTATAAAATTACCAAAATACCTTCGATTTACAAAATTACT-ATTTTACCCTCAATTTA
119643436 CAGAATTACCGTTTTAC
65 CAGAATTACCGTTTTAC
* * * * *
119643453 CCTCAATTTACAAAATTACTAAAATACCTTTGGTTTATAAAATTAC
1 CCTCAATTTATAAAATTACCAAAATACCTTCGATTTACAAAATTAC
119643499 CAAAATACCC
Statistics
Matches: 98, Mismatches: 27, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
80 1 0.01
81 97 0.99
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (81 bp):
CCTCAATTTATAAAATTACCAAAATACCTTCGATTTACAAAATTACTATTTTACCCTCAATTTAC
AGAATTACCGTTTTAC
Found at i:119643508 original size:54 final size:54
Alignment explanation
Indices: 119643450--119643673 Score: 166
Period size: 54 Copynumber: 4.1 Consensus size: 54
119643440 ATTACCGTTT
** * **
119643450 TACCCTCAATTTACAAAATTACTAAAATACCTTTGGTTTATAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCAAAA
* * * *
119643504 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCTAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCAAAA
* * * ** *
119643558 CACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCA-AAA
* * * * * * * **
119643612 TAGCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TA-CCCTCAATTTGT-AAAATTACCA-AAATACCACTGGTTTATAAAATTACCAAAA
119643668 TACCCT
1 TACCCT
119643674 TGGTTTGTAG
Statistics
Matches: 131, Mismatches: 32, Indels: 13
0.74 0.18 0.07
Matches are distributed among these distances:
53 2 0.02
54 85 0.65
55 12 0.09
56 32 0.24
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCAAAA
Found at i:119643551 original size:81 final size:83
Alignment explanation
Indices: 119643464--119643694 Score: 204
Period size: 81 Copynumber: 2.8 Consensus size: 83
119643454 CTCAATTTAC
*
119643464 AAAATTACTAAAATACCTTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCATTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* *
119643529 AATA-CCACTG-GTTTGT-
66 AATAGCC-CTGACTTTCTA
* * * ** * * **
119643545 GAAATTACCT-AAACACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CA
1 AAAATTA-CTAAAATACCATTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
*
119643608 GAAATAGCCTTGACTTTCTA
65 -AAATAGCCCTGACTTTCTA
* ** * * * *
119643628 AAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCA
1 AAAATTACTA-AAATACCATTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
119643692 AAA
65 AAA
119643695 CACCCTTGTA
Statistics
Matches: 114, Mismatches: 28, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
80 2 0.02
81 57 0.50
82 8 0.07
83 45 0.39
84 2 0.02
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (83 bp):
AAAATTACTAAAATACCATTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
AATAGCCCTGACTTTCTA
Found at i:119643667 original size:27 final size:27
Alignment explanation
Indices: 119643459--119643679 Score: 128
Period size: 27 Copynumber: 8.1 Consensus size: 27
119643449 TTACCCTCAA
*
119643459 TTTACAAAATTACTAAAATACCTTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
* * * *
119643486 TTTATAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACTAAAATACCCTTGG
** *
119643513 TTTGTAAAATTACCAAAATACCAC-TGG
1 TTTACAAAATTACTAAAATACC-CTTGG
*** * **
119643540 TTTGTGAAATTACCT-AAACACCCTTAA
1 TTTACAAAATTA-CTAAAATACCCTTGG
** * * **
119643567 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTACAAAATTACTAAAATACCCTTGG
* *
119643594 TTTACAAAATTAC-AGAAATAGCCTTGAC
1 TTTACAAAATTACTA-AAATACCCTTG-G
*
119643622 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACTA-AAATACCCTTGG
*
119643650 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTTGG
119643677 TTT
1 TTT
119643680 GTAGATTTAC
Statistics
Matches: 156, Mismatches: 27, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.02
27 125 0.80
28 9 0.06
29 19 0.12
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTTGG
Found at i:119644645 original size:25 final size:25
Alignment explanation
Indices: 119644607--119644676 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
119644597 AGGAAATGCT
* *
119644607 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
119644632 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
119644657 AAAACGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
119644677 ATTAAAAGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:119644932 original size:31 final size:30
Alignment explanation
Indices: 119644883--119644965 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
119644873 CGCTTACAGT
*
119644883 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGCCCAGTGATATGATTTATGA
119644913 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTC-GCCCAGTGATATGATTTATGA
119644944 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTC-GCCCAGTGATATG
119644966 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 14 0.28
31 36 0.72
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGCCCAGTGATATGATTTATGA
Found at i:119645064 original size:33 final size:33
Alignment explanation
Indices: 119644971--119645064 Score: 90
Period size: 33 Copynumber: 2.9 Consensus size: 33
119644961 ATATGTCGAG
*
119644971 ACTGAATTAGGGCTTAGGCCCATATTGCTACTGTT
1 ACTGAA-TAGGGCTTAGGCCCAGATTG-TACTGTT
* * *
119645006 --T--A-AGGGCTAAGGCCCAGACTATACTGTT
1 ACTGAATAGGGCTTAGGCCCAGATTGTACTGTT
*
119645034 ACTGAATAGGGCTTTGGCCCAGATTGTACTG
1 ACTGAATAGGGCTTAGGCCCAGATTGTACTG
119645065 ACACTGTGTT
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
28 7 0.15
29 15 0.33
30 1 0.02
31 1 0.02
32 1 0.02
33 21 0.46
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (33 bp):
ACTGAATAGGGCTTAGGCCCAGATTGTACTGTT
Found at i:119648015 original size:28 final size:28
Alignment explanation
Indices: 119647946--119648046 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
119647936 GACAAGATTG
* * * *
119647946 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
119647976 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
119648004 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
119648033 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
119648047 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:119663799 original size:74 final size:72
Alignment explanation
Indices: 119663610--119664021 Score: 522
Period size: 74 Copynumber: 5.6 Consensus size: 72
119663600 TGATGTTTTT
**
119663610 ATTTCTG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
119663674 AATTTCA
66 AATTTCA
* * ** * *
119663681 ATTTCTGCTTTC-AAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
119663745 ATTTTCA
66 AATTTCA
* * *
119663752 ATTTTTGTCTTTCAAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAG
1 ATTTCTGT-TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
119663817 GTAATTTCA
64 GTAATTTCA
** * * *
119663826 ATTTCTGTTGACAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCTG
1 ATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTG
*
119663891 AGGTAATTTTA
62 AGGTAATTTCA
* * * *
119663902 ATTTTTGTTGTTTCGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAG
1 ATTTCTG-T-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
119663967 GTAATTTCA
64 GTAATTTCA
*
119663976 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
1 ATTTCTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
119664022 ACTTTTTAAT
Statistics
Matches: 293, Mismatches: 38, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
71 64 0.22
72 10 0.03
73 36 0.12
74 120 0.41
76 60 0.20
77 1 0.00
78 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
AATTTCA
Found at i:119663944 original size:150 final size:146
Alignment explanation
Indices: 119663615--119664021 Score: 552
Period size: 150 Copynumber: 2.8 Consensus size: 146
119663605 TTTTTATTTC
**
119663615 TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATTTC
1 TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* ** *
119663680 AATTTCTGCTT-TC-AAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTCTGCTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
119663743 GTATTTTCAATTTTTG
131 GTATTTTCAATTTTTG
* * *
119663759 TCTTTCAAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* * * * *
119663824 CAATTTCTG-TTGACAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACG
65 CAATTTCTGCTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACG
119663888 CTGAGGTAATTTT-AATTTTTG
126 CTGAGGT-ATTTTCAATTTTTG
* * *
119663909 TTGTTTCGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTAATTT
1 -TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* *
119663974 CAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
65 CAATTTCTGCTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
119664022 ACTTTTTAAT
Statistics
Matches: 228, Mismatches: 25, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
144 7 0.03
145 64 0.28
148 33 0.14
149 29 0.13
150 81 0.36
151 14 0.06
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (146 bp):
TGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTCTGCTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
GTATTTTCAATTTTTG
Found at i:119664115 original size:14 final size:14
Alignment explanation
Indices: 119664096--119664130 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
119664086 CGCTGAGGTA
* *
119664096 TTTTCAATTTCTGC
1 TTTTCAATTCCTAC
119664110 TTTTCAATTCCTAC
1 TTTTCAATTCCTAC
119664124 TTTTCAA
1 TTTTCAA
119664131 AAAATCAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.03, T:0.54
Consensus pattern (14 bp):
TTTTCAATTCCTAC
Found at i:119664176 original size:88 final size:88
Alignment explanation
Indices: 119664043--119664256 Score: 261
Period size: 88 Copynumber: 2.4 Consensus size: 88
119664033 TTACTTTTTC
* * * *
119664043 AAAATCAACTTATATCGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTCAATTTCT
* *
119664108 GCTTTTCAATTCCTA-CTT-TTCAA
66 -ATTTTC-ATTACTATCTTCTTCAA
* * * *
119664131 AAAATCAGCTCATATTGCGAAAGTTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTCAATTTCT
* * *
119664196 ATTTTCATTATTATGTTCTTGAA
66 ATTTTCATTACTATCTTCTTCAA
* *
119664219 AGAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
119664257 AGCCACGCGC
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 5 0.05
87 7 0.07
88 94 0.89
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (88 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTCAATTTCT
ATTTTCATTACTATCTTCTTCAA
Found at i:119665328 original size:14 final size:16
Alignment explanation
Indices: 119665309--119665343 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
119665299 TTTTACACGC
119665309 ATAAATACATATAAATAA
1 ATAAATA-ATA-AAATAA
119665327 ATAAATAATAAAATAA
1 ATAAATAATAAAATAA
119665343 A
1 A
119665344 AATAACGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 3 0.18
18 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAAATAATAAAATAA
Found at i:119666011 original size:3 final size:3
Alignment explanation
Indices: 119666005--119666059 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
119665995 TAATATCATC
*
119666005 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119666053 ATT ATT A
1 ATT ATT A
119666060 GCAGTAGTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:119668500 original size:20 final size:19
Alignment explanation
Indices: 119668463--119668500 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
119668453 AATATATACA
*
119668463 TAAAGGTATATGATAATAT
1 TAAAGGTATATCATAATAT
119668482 TAAAGGTATATACATAATA
1 TAAAGGTATAT-CATAATA
119668501 AAAAATAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.34
Consensus pattern (19 bp):
TAAAGGTATATCATAATAT
Found at i:119668794 original size:3 final size:3
Alignment explanation
Indices: 119668788--119668908 Score: 79
Period size: 3 Copynumber: 39.3 Consensus size: 3
119668778 AATAATAGCC
* **
119668788 ATA ATA ATA GA-A ATA ATA GTA ATA ATA A-A ATA ATA ACG ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* **
119668832 ATAA ATCGA ATA ATA TTA ATA ATA ATA ATA GCA ATA ATA ATA AT- ATA
1 AT-A AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
119668879 AGT- ATA TATGA AAA ATA ATA ATA ATG ATA A
1 A-TA ATA -AT-A ATA ATA ATA ATA ATA ATA A
119668909 CTAAGATAAT
Statistics
Matches: 91, Mismatches: 17, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
2 6 0.07
3 73 0.80
4 8 0.09
5 4 0.04
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:119668810 original size:18 final size:17
Alignment explanation
Indices: 119668773--119668876 Score: 75
Period size: 18 Copynumber: 5.5 Consensus size: 17
119668763 CTCAAAAAGA
119668773 AATAAAATAATAGCCATAAT
1 AATAAAATAATAG---TAAT
119668793 AATAGAAATAATAGTAAT
1 AATA-AAATAATAGTAAT
119668811 AATAAAATAATAACGATAAT
1 AATAAAATAAT-A-G-TAAT
* *
119668831 AAT-AAATCGAATAATATT
1 AATAAAAT--AATAGTAAT
*
119668849 AATAATAATAATAGCAAT
1 AATAA-AATAATAGTAAT
119668867 AATAATAATA
1 AATAA-AATA
119668877 TAAGTATATA
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.10
18 31 0.44
19 6 0.08
20 15 0.21
21 12 0.17
ACGTcount: A:0.62, C:0.05, G:0.06, T:0.28
Consensus pattern (17 bp):
AATAAAATAATAGTAAT
Found at i:119673045 original size:23 final size:23
Alignment explanation
Indices: 119673002--119673046 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
119672992 TTTATTTTAT
* *
119673002 TTTATATTTTAATTTTAAAATTA
1 TTTATATATTAATTTAAAAATTA
119673025 TTTATATATT-ATTTAATAAATT
1 TTTATATATTAATTTAA-AAATT
119673047 TAATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTATATATTAATTTAAAAATTA
Found at i:119674005 original size:33 final size:33
Alignment explanation
Indices: 119673968--119674034 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
119673958 ACGTTTTTTT
* *
119673968 GTATCTTTTCTTTTTGTGTGACCACCCCGTTGG
1 GTATCTTGTCCTTTTGTGTGACCACCCCGTTGG
*
119674001 GTATCTTGTCCTTTTGTGTGACCACCCTGTTGG
1 GTATCTTGTCCTTTTGTGTGACCACCCCGTTGG
119674034 G
1 G
119674035 GCTTTCTATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.09, C:0.24, G:0.24, T:0.43
Consensus pattern (33 bp):
GTATCTTGTCCTTTTGTGTGACCACCCCGTTGG
Found at i:119678130 original size:2 final size:2
Alignment explanation
Indices: 119678123--119678147 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119678113 TTTTATTTTC
119678123 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
119678148 TTGTACATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119679522 original size:131 final size:130
Alignment explanation
Indices: 119679287--119679762 Score: 510
Period size: 131 Copynumber: 3.6 Consensus size: 130
119679277 TTATAATCAG
* ** * *
119679287 TCATGTTTTCTAAAAATCCTTTAAAACGAAGGCGATGTTCAATATTTGGCAATTCGCGGAATCGT
1 TCATGTTTCCTAAAAAT-CTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCG-GGAATCGT
* * * * *
119679352 GCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTGGAATTTC
64 GCCCTATCGTGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTGGAATTTC
*
119679417 AT
129 AC
* ** *
119679419 TCATGTTTCCTAAAAACTCTTTAAAACAAAGGTAATACTCGATGTTTGGCAATTTGGGAATCGTG
1 TCATGTTTCCTAAAAA-TCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTG
* * *
119679484 CCTTATCGTGCTGGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTCA
65 CCCTATCGTGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTGGAATTTCA
119679549 C
130 C
* * * * *
119679550 CCATGTCTT--TAAAGATTCTATAAAACGAAGGTAATGTTTGATGTTTGGCAATTAGGGGAATCG
1 TCATGT-TTCCTAAA-AATCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATT-CGGGAATCG
* * * *
119679613 TGCCCTATCGTGCTGGGTTGCGATTTCCTGTTGGTTCAAAATAATCGAATATCCCCATTAGAATT
63 TGCCCTATCGTGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATAT-CCCTTTGGAATT
119679678 TCAC
127 TCAC
* * ** ** * * * *
119679682 TCATGTTTCTTAAAAAT-TCTAAAAATAAGACAATGCTCGATGTTTAGAAATTCGAGGAATTGTG
1 TCATGTTTCCTAAAAATCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCG-GGAATCGTG
119679746 CCCTA-CTGTGCTGGGTT
65 CCCTATC-GTGCTGGGTT
119679763 TCGGTTTTAC
Statistics
Matches: 289, Mismatches: 46, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
130 38 0.13
131 179 0.62
132 67 0.23
133 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (130 bp):
TCATGTTTCCTAAAAATCTTTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTGC
CCTATCGTGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTGGAATTTCAC
Found at i:119681354 original size:18 final size:18
Alignment explanation
Indices: 119681318--119681368 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
119681308 TGTTGTAATA
119681318 CTATTTATATATTTAAATA-T
1 CTATTTA-AT-TTT-AATAGT
119681338 CTATTTCAATTTTAATAGT
1 CTATTT-AATTTTAATAGT
*
119681357 TTATTTAATTTT
1 CTATTTAATTTT
119681369 TAAAATTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.36
19 9 0.32
20 8 0.29
21 1 0.04
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (18 bp):
CTATTTAATTTTAATAGT
Found at i:119683519 original size:49 final size:49
Alignment explanation
Indices: 119683447--119683633 Score: 236
Period size: 49 Copynumber: 3.8 Consensus size: 49
119683437 TGAGGTCACG
* *
119683447 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * *
119683496 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT-GGTCGCA
* *
119683547 TGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
119683596 TGTGTAGTACTAAGTGCAGGCTACTA--TGCTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTG-TACCAGATA
119683634 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 9 0.08
49 62 0.53
50 9 0.08
51 36 0.31
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:119683615 original size:100 final size:99
Alignment explanation
Indices: 119683442--119683628 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 99
119683432 TATTGTGAGG
* * * *
119683442 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
119683507 AAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
66 AAGTGCAGGCTACTATGC-TACCCAATAACTTCGA
119683542 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
119683607 AAGTGCAGGCTACTATGCTACC
66 AAGTGCAGGCTACTATGCTACC
119683629 AGATAGCTTT
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 4 0.05
100 79 0.95
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTATACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCTACCCAATAACTTCGA
Found at i:119695475 original size:18 final size:16
Alignment explanation
Indices: 119695452--119695492 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
119695442 CATCCAATAA
119695452 AAATAAAATATTATAAAC
1 AAATAAAATATT-T-AAC
119695470 AAAT-AAATATTTAAC
1 AAATAAAATATTTAAC
119695485 -AATAAAAT
1 AAATAAAAT
119695493 GTGTTATGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.14
15 7 0.32
16 1 0.05
17 7 0.32
18 4 0.18
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATAAAATATTTAAC
Found at i:119699707 original size:26 final size:26
Alignment explanation
Indices: 119699671--119699806 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
119699661 TGATACAAAT
119699671 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119699697 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119699723 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119699749 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119699775 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
119699801 TGATAA
1 TGATAA
119699807 GAATATCATG
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:119702895 original size:23 final size:21
Alignment explanation
Indices: 119702854--119702895 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
119702844 AGTGAAATGG
*
119702854 ATGAATTTTTTTAATGGCAAA
1 ATGAATTTTTTTAAAGGCAAA
119702875 ATGAATTTTCTTTTAAAGGCA
1 ATGAA-TTT-TTTTAAAGGCA
119702896 CAATCAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (21 bp):
ATGAATTTTTTTAAAGGCAAA
Found at i:119704211 original size:22 final size:23
Alignment explanation
Indices: 119704177--119704231 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
119704167 CCGATTGTAA
* *
119704177 GAGGGGAGGATCGATGGTATTTT
1 GAGGAGAGAATCGATGGTATTTT
*
119704200 GAGGA-AGAATCGATTGTATTTT
1 GAGGAGAGAATCGATGGTATTTT
*
119704222 GGGGAGAGAA
1 GAGGAGAGAA
119704232 GAGATTGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.29, C:0.04, G:0.40, T:0.27
Consensus pattern (23 bp):
GAGGAGAGAATCGATGGTATTTT
Found at i:119704237 original size:23 final size:22
Alignment explanation
Indices: 119704193--119704242 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
119704183 AGGATCGATG
**
119704193 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
119704215 GTATTTTGGGGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
119704238 GTATT
1 GTATT
119704243 AGAGGGAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:119704964 original size:39 final size:39
Alignment explanation
Indices: 119704849--119704965 Score: 198
Period size: 39 Copynumber: 3.0 Consensus size: 39
119704839 ATAAAGTATG
*
119704849 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTA
119704889 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGTA
* *
119704928 GTTTTAATTAATAATAAAACAAAGTAGCATGGGGGAGT
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGT
119704966 GGAATCAACT
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 59 0.80
40 15 0.20
ACGTcount: A:0.46, C:0.03, G:0.21, T:0.30
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGTA
Found at i:119711076 original size:11 final size:11
Alignment explanation
Indices: 119711060--119711089 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
119711050 TAACATTAAG
119711060 AATATATATAT
1 AATATATATAT
*
119711071 AATATAAATAT
1 AATATATATAT
119711082 AATATATA
1 AATATATA
119711090 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:119711933 original size:15 final size:16
Alignment explanation
Indices: 119711900--119711935 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
119711890 TTTTCTTCTT
*
119711900 TTTTTTTGGGGTTAGG
1 TTTTTTTGGGGTTAAG
119711916 TTTTTTTGGGG-TAAG
1 TTTTTTTGGGGTTAAG
119711931 TTTTT
1 TTTTT
119711936 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.61
Consensus pattern (16 bp):
TTTTTTTGGGGTTAAG
Found at i:119711950 original size:16 final size:15
Alignment explanation
Indices: 119711931--119711966 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
119711921 TTGGGGTAAG
*
119711931 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
119711947 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
119711962 TTTTT
1 TTTTT
119711967 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:119712718 original size:88 final size:83
Alignment explanation
Indices: 119712611--119713188 Score: 290
Period size: 88 Copynumber: 7.0 Consensus size: 83
119712601 AACAGACATT
** * *
119712611 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
119712676 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
119712699 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
119712763 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
119712782 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
119712843 ATGAGTTGAATTTTTTTG-AAAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
119712865 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
119712930 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * * *
119712953 AAAAATAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
119713018 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
119713036 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
119713096 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
119713113 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
119713174 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
119713189 CAGAAATTGA
Statistics
Matches: 383, Mismatches: 70, Indels: 84
0.71 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 2 0.01
79 64 0.17
80 3 0.01
81 11 0.03
82 38 0.10
83 14 0.04
84 41 0.11
85 9 0.02
86 6 0.02
87 19 0.05
88 114 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:119712815 original size:30 final size:30
Alignment explanation
Indices: 119712779--119712840 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
119712769 TTTTGAAAAA
119712779 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
119712809 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
119712839 CA
1 CA
119712841 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:119713278 original size:72 final size:73
Alignment explanation
Indices: 119712988--119713501 Score: 404
Period size: 72 Copynumber: 6.6 Consensus size: 73
119712978 ACATGTAACC
* * *
119712988 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAATAGAAATTG--AAAATAC
* *
119713053 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* *
119713066 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ATAGAAATTGAAAATACC
*
119713131 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * * * *
119713144 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTTA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAATACCTCA
*
119713209 ACGTGTCT
66 GCGTGTCT
* ** * *
119713217 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAATAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAATACCTCA
*
119713281 GCGTGTCC
66 GCGTGTCT
* **
119713289 CGAGGCTCGACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAAAT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAA-ATAGAAATTG----A-
** ** *
119713354 GGAAATTGAAAATACCTCGACGTGTGAT
56 --AAA-T--ACCT-CAGC---GTGT-CT
* * * *
119713382 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAATAGAAATTGAAAATACCT
119713447 CAGCGTGTC-
64 CAGCGTGTCT
119713456 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
119713502 GGCAAAAATT
Statistics
Matches: 351, Mismatches: 57, Indels: 60
0.75 0.12 0.13
Matches are distributed among these distances:
72 63 0.18
73 30 0.09
74 43 0.12
75 20 0.06
76 14 0.04
77 49 0.14
78 13 0.04
79 51 0.15
80 2 0.01
82 2 0.01
83 2 0.01
85 2 0.01
86 2 0.01
88 2 0.01
89 2 0.01
90 9 0.03
91 9 0.03
92 4 0.01
93 1 0.00
94 31 0.09
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:119713422 original size:92 final size:89
Alignment explanation
Indices: 119713257--119713440 Score: 221
Period size: 94 Copynumber: 2.0 Consensus size: 89
119713247 TTGAATTTTG
* * *
119713257 AAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCGACTCACCTCTCGCAATATGAGTTG
1 AAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTG
*
119713322 ATTTTTTTTTTGA-AAGGCAGAAATTGA
66 A--TCTTTTTTGACAA--CAGAAATTGA
* * *
119713349 AAAATGGAAATTGAAAATACCTC-GACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAG
1 AAAATAGAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATACGAG
119713413 TTGA-CTTTTTTGACAACAGAAATTGA
63 TTGATCTTTTTTGACAACAGAAATTGA
119713439 AA
1 AA
119713441 TTACCTCAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
90 12 0.15
91 9 0.11
92 28 0.35
94 32 0.40
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (89 bp):
AAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTG
ATCTTTTTTGACAACAGAAATTGA
Found at i:119713478 original size:74 final size:75
Alignment explanation
Indices: 119713355--119713516 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
119713345 TTGAAAAATG
*
119713355 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
119713420 TTTTGACAACA
65 TTTTGACAACA
* * *
119713431 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
119713494 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
119713506 AAAATTGAAAA
1 GAAATTGAAAA
119713517 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:119713560 original size:165 final size:165
Alignment explanation
Indices: 119713185--119713843 Score: 913
Period size: 165 Copynumber: 4.0 Consensus size: 165
119713175 TGATTTTTTG
* ** * ** *
119713185 AAAACAGAAATTGAAAATACCTTAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
119713248 TGA-ATTTTGAAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCGACTCACCTCTCGCA
66 TGATATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
119713312 ATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGA
131 ATATGAGTTGA--TTTTTTTTGAAAGGCAGAAATTGA
* *
119713349 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *
119713414 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
*
119713479 AATATGAGTTGA-TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
* * *
119713514 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
119713579 TGATTTTTTGACAACAGAAATTGAAATTATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 TGATATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
*
119713644 ATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGA
131 ATATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTGA
* *
119713680 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* *** * * * *
119713745 TGAAATTAAAACATA-A-AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGT
66 TGATATTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
119713808 AATATGAGTTGA-TTTTTTTGACAA--CAGAAATTGA
130 AATATGAGTTGATTTTTTTTGA-AAGGCAGAAATTGA
119713842 AA
1 AA
119713844 TTACCTCAGC
Statistics
Matches: 452, Mismatches: 35, Indels: 18
0.90 0.07 0.04
Matches are distributed among these distances:
162 12 0.03
163 9 0.02
164 100 0.22
165 138 0.31
166 125 0.28
167 1 0.00
168 67 0.15
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (165 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATATTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGA
Found at i:119713601 original size:89 final size:88
Alignment explanation
Indices: 119713431--119713604 Score: 244
Period size: 91 Copynumber: 2.0 Consensus size: 88
119713421 TTTGACAACA
* * *
119713431 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
119713496 TTGAAAGGCAAAAATTGAAAAACG
66 TTGAAA-GCAAAAATTGAAAAACG
* *
119713520 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
*
119713584 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAAAAATTGAAA
119713605 TTATCTCAGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
89 33 0.43
90 8 0.11
91 35 0.46
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAAATTGAAAAACG
Found at i:119713627 original size:404 final size:388
Alignment explanation
Indices: 119712822--119713682 Score: 931
Period size: 404 Copynumber: 2.1 Consensus size: 388
119712812 AAATTAAAAA
*
119712822 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAAACAGAAATTGAAAATAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGAA---TTTTG-----AAAACAGAAATTGAAAATACC
* * *
119712887 TCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTT
58 TCAG-ACGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT
** **
119712952 GAAAAATAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGA
122 GAAAAATAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATACGA
* * * * *
119713017 GTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCAC
187 GTTGACTTTTTTGAAAAACAGAAATTG-AAAAATACCTCAGCGTGT-ACCTGAAGCTCAACTCAC
*
119713082 CTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGCTCAGCGCATGAGCCAA
250 CTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGCATGAGCCAA
* * * *
119713147 GGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTTAACG
315 GGCTCAACTCACCACTCGCAATACAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACG
*
119713212 TGTCTTGAG
380 TGTCCTGAG
** * *
119713221 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAG-CGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGACGT
* * * *
119713285 GTCCCGAGGCTCGACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAA
66 GACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTGAAA-ACAGAAATTGAA
* * * * * *
119713350 AAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
125 AAATAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATACGAGTT
* * *
119713415 GACTTTTTTG-ACAACAGAAATTG-AAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTC
190 GACTTTTTTGAAAAACAGAAATTGAAAAATACCTCAGCGTGTACCTGAAGCTCAACTCACCTCTC
* *
119713477 GCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGT
255 GCAATATGAGTTGATTTTTTTGAAA-G-----A-T-----A--GAAATTGAAAATACCTCAGCGC
* * * * * *
119713542 GTGA-CCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAAT
306 ATGAGCC-AAGGCTCAACTCACCACTCGCAATACAAGTTGATTTTTTGAAAACAGAAATTGAAAA
* *
119713606 TATCTCAGCGTGTCCTGAG
370 TACCTCAACGTGTCCTGAG
*
119713625 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----ATTTTGAAA-ACAGAAATTGAAAA
119713683 ACGGAAATTG
Statistics
Matches: 385, Mismatches: 51, Indels: 42
0.81 0.11 0.09
Matches are distributed among these distances:
389 36 0.09
390 45 0.12
391 23 0.06
392 15 0.04
394 19 0.05
395 74 0.19
396 6 0.02
397 1 0.00
399 29 0.08
402 1 0.00
403 2 0.01
404 114 0.30
408 8 0.02
409 12 0.03
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (388 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGACGT
GACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAAATAG
AAATTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATACGAGTTGACTTT
TTTGAAAAACAGAAATTGAAAAATACCTCAGCGTGTACCTGAAGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGCATGAGCCAAGGCTCAACTCA
CCACTCGCAATACAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAG
Found at i:119713642 original size:73 final size:74
Alignment explanation
Indices: 119713520--119713897 Score: 212
Period size: 74 Copynumber: 4.9 Consensus size: 74
119713510 TTGAAAAACG
* *
119713520 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
119713585 TTTGACAACA
65 TTTGACAACA
* * * *
119713595 GAAATTGAAATTATCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA---T
*
119713659 TTTTTGAAAGACA
63 TTTTTGACA-ACA
** *** * * * *
119713672 GAAATTGAAAA-A-CGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCG
1 GAAATTGAAAATACCTCAGCGTG----TACCT----GAG-G--CTCA-ACTC-AC-C---ACTCG
** ***
119713735 CAATACGAGTTGAAATTAAAACATA-A
49 CAATACGAGTTGATTTTTTGACA-ACA
* * * * * *
119713761 -AAATTGAAAATACCTCAGCGTG-CCCCGAGGCTCAACTCACCTCTAGTAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTT
119713824 TTTGACAACA
65 TTTGACAACA
* * * *
119713834 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
119713898 GAAAAAGTAG
Statistics
Matches: 228, Mismatches: 47, Indels: 58
0.68 0.14 0.17
Matches are distributed among these distances:
72 16 0.07
73 43 0.19
74 53 0.23
75 26 0.11
76 12 0.05
77 16 0.07
78 3 0.01
79 1 0.00
80 4 0.02
81 2 0.01
84 2 0.01
85 3 0.01
87 3 0.01
88 13 0.06
89 4 0.02
90 10 0.04
93 17 0.07
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTGACAACA
Found at i:119713681 original size:14 final size:14
Alignment explanation
Indices: 119713662--119713696 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
119713652 TGATTTTTTT
*
119713662 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
119713676 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
119713690 TTGAAAA
1 TTGAAAA
119713697 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:119714119 original size:72 final size:72
Alignment explanation
Indices: 119713672--119714127 Score: 319
Period size: 72 Copynumber: 6.3 Consensus size: 72
119713662 TTGAAAGACA
* * * * * *
119713672 GAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCA
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTAGCA
*
119713737 ATACGAGTT
64 ATATGAGTT
* * *
119713746 GAAATT-AAAACATAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGTAA
1 GAAATTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
119713810 TATGAGTT
65 TATGAGTT
** * * * *
119713818 GATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-
1 GA---AATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT-AG
119713881 CAATATGAGTT
62 CAATATGAGTT
** * *** * * * *** * ** * * *
119713892 GATTTTGAAAAAGTAGAAATT-AAAA-GGTTCAACCTACCTCTCGCAATATGAGTTGA-TTCTTG
1 GAAATTGAAAAA-CAGAAATTGAAAATACCTCAGCGTGCC-C-CG-AGGCTCAACTCACCTCTAG
*
119713954 -AACA--ACG-T
62 CAATATGA-GTT
* * *
119713962 -AAATTG-AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
1 GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
119714025 ATGAGTT
66 ATGAGTT
*
119714032 GAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
1 GAAATTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
119714096 TATGAGTT
65 TATGAGTT
** *
119714104 GATTTTGAAAAACAAAAATT-AAAA
1 GAAATTGAAAAACAGAAATTGAAAA
119714128 GGCTTAACTC
Statistics
Matches: 291, Mismatches: 67, Indels: 51
0.71 0.16 0.12
Matches are distributed among these distances:
66 5 0.02
67 12 0.04
68 12 0.04
69 11 0.04
70 4 0.01
71 24 0.08
72 114 0.39
73 19 0.07
74 85 0.29
75 5 0.02
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (72 bp):
GAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTT
Found at i:119714222 original size:122 final size:124
Alignment explanation
Indices: 119714002--119714248 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
119713992 GCGTGACCTG
* *
119714002 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
119714067 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * * *
119714127 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
119714189 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
119714248 A
1 A
119714249 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 62 0.55
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:119714348 original size:70 final size:70
Alignment explanation
Indices: 119714127--119714528 Score: 331
Period size: 71 Copynumber: 5.5 Consensus size: 70
119714117 AAAAATTAAA
* ** * * * * *
119714127 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAA-ACATAAACTAAAAATACCTCAGTGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
119714191 CCCCG
66 CCCCG
* * * *
119714196 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
* **
119714260 TGTCTTG
64 TGCCCCG
*
119714267 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
119714332 CCCCG
66 CCCCG
* * ** ** * ** *
119714337 AGGCTCAACTCACTTCTAGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TAAAAC-ACAAAAATTG-AAA-A-TACCTC
*** *
119714402 AAAATACCTCAGCGTG
60 AGCGTGCC-C--C--G
119714418 ACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCT
1 A---G--GCTCAACTCACCTCTCGCAATATGAGTTG--ATTAAAACACAAAAATTGAAAATACCT
119714483 CAGCGTGCCCCG
59 CAGCGTGCCCCG
*
119714495 AGGCTCAACTCACCTCTAGCAATATGAGTTGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT
119714529 TTGAAAAACA
Statistics
Matches: 262, Mismatches: 50, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
69 33 0.13
70 58 0.22
71 60 0.23
72 32 0.12
73 8 0.03
74 4 0.02
75 1 0.00
76 6 0.02
77 3 0.01
79 2 0.01
81 3 0.01
82 6 0.02
83 1 0.00
84 4 0.02
85 8 0.03
86 31 0.12
87 1 0.00
88 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
CCCCG
Found at i:119714516 original size:158 final size:155
Alignment explanation
Indices: 119714230--119714533 Score: 518
Period size: 158 Copynumber: 1.9 Consensus size: 155
119714220 TGAGTTGATT
* * *
119714230 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
119714295 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
119714360 ATGAGTTGATTCTTGAACAACGTAAA
131 ATGAGTTGATT-TTGAACAACGTAAA
* * *
119714386 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
119714451 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
119714516 ATATGAGTTGATTTTGAA
129 ATATGAGTTGATTTTGAA
119714534 AAACAAAAAT
Statistics
Matches: 139, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
156 62 0.45
157 5 0.04
158 72 0.52
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (155 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAACAACGTAAA
Found at i:119714517 original size:72 final size:71
Alignment explanation
Indices: 119714383--119714548 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
119714373 TGAACAACGT
* * * *
119714383 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
119714448 GAGTTG
66 GAGTTG
*
119714454 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
119714519 TGAGTTG
65 TGAGTTG
**
119714526 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
119714549 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:119714538 original size:421 final size:421
Alignment explanation
Indices: 119713927--119714796 Score: 1697
Period size: 421 Copynumber: 2.1 Consensus size: 421
119713917 GGTTCAACCT
*
119713927 ACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
1 ACCTCTAGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
119713992 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
66 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
119714057 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
131 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
119714122 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAG
196 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAG
* *
119714187 TGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATA
261 CGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATA
119714252 CCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGA
326 CCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGA
119714317 AAATACCTCAGCGTGCCCCGAGGCTCAACTC
391 AAATACCTCAGCGTGCCCCGAGGCTCAACTC
*
119714348 ACTTCTAGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
1 ACCTCTAGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
119714413 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
66 GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
119714478 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
131 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
119714543 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAG
196 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAG
119714608 CGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATA
261 CGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATA
119714673 CCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGA
326 CCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGA
119714738 AAATACCTCAGCGTGCCCCGAGGCTCAACTC
391 AAATACCTCAGCGTGCCCCGAGGCTCAACTC
119714769 ACCTCTAGCAATATGAGTTGATT-TTGAA
1 ACCTCTAGCAATATGAGTTGATTCTTGAA
119714797 AAACAACAAT
Statistics
Matches: 444, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
420 5 0.01
421 439 0.99
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (421 bp):
ACCTCTAGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCA
GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAA
TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAG
CGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATA
CCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGA
AAATACCTCAGCGTGCCCCGAGGCTCAACTC
Found at i:119714643 original size:122 final size:124
Alignment explanation
Indices: 119714423--119714798 Score: 389
Period size: 122 Copynumber: 2.9 Consensus size: 124
119714413 GCGTGACCTG
* *
119714423 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
*
119714488 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAAATAAA
* * * *
119714548 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
119714610 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAAAT-AAA
** * * * * * * * *
119714670 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGT-TGA---AATTAAAACACAAAAAC
*
119714735 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
50 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
119714799 ACAACAATTA
Statistics
Matches: 205, Mismatches: 26, Indels: 24
0.80 0.10 0.09
Matches are distributed among these distances:
121 11 0.05
122 67 0.33
123 12 0.06
124 1 0.00
125 27 0.13
126 2 0.01
129 1 0.00
130 3 0.01
131 3 0.01
132 2 0.01
133 1 0.00
134 1 0.00
136 1 0.00
140 6 0.03
141 67 0.33
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAAATAAA
Found at i:119714691 original size:71 final size:70
Alignment explanation
Indices: 119714548--119714865 Score: 367
Period size: 71 Copynumber: 4.5 Consensus size: 70
119714538 AAAAATTAAA
* * * * * * *
119714548 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAAATAAAAATACCTCAACGTG
119714612 CCCCG
66 CCCCG
119714617 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAAATAAAAATACCTCAACGT
* **
119714682 GTCTTG
65 GCCCCG
* *
119714688 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGC
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTTAAAACA-AAAAA-TAAAAATACCTCAAC
119714750 GTGCCCCG
63 GTGCCCCG
* * * *
119714758 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAACAATTAAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT--AAAACAAAAAATAAAAATACCTCAACG
* **
119714823 TGTCTTG
64 TGCCCCG
119714830 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
119714866 CCTTGAAAAG
Statistics
Matches: 212, Mismatches: 26, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
68 6 0.03
69 33 0.16
70 53 0.25
71 58 0.27
72 53 0.25
73 3 0.01
74 6 0.03
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAAATAAAAATACCTCAACGTG
CCCCG
Found at i:119714856 original size:142 final size:140
Alignment explanation
Indices: 119714548--119714863 Score: 506
Period size: 142 Copynumber: 2.2 Consensus size: 140
119714538 AAAAATTAAA
* * ** * *
119714548 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
119714613 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATACCTCA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATACCTCA
119714678 ACGTGTCTTG
131 ACGTGTCTTG
* *
119714688 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAA-ACAAAAACTAAAAATACCTCAGCGTG
* *
119714753 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAACAATTAAAAATACCT
65 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAAATAAAAATACCT
119714818 CAACGTGTCTTG
129 CAACGTGTCTTG
119714830 AGGCTCAACTCATCTCTCGCAATATGAGTTGATT
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATT
119714864 TTCCTTGAAA
Statistics
Matches: 162, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
140 33 0.20
141 63 0.39
142 66 0.41
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (140 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAAATAAAAATACCTCA
ACGTGTCTTG
Found at i:119719896 original size:12 final size:12
Alignment explanation
Indices: 119719876--119719911 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
119719866 TGGGATATGC
*
119719876 AATGTATGAATG
1 AATGCATGAATG
119719888 AATGCATGAATG
1 AATGCATGAATG
119719900 AATGCATGAATG
1 AATGCATGAATG
119719912 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:119722172 original size:14 final size:14
Alignment explanation
Indices: 119722142--119722174 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
119722132 CATTAAGAAT
119722142 ATATATATATATAA
1 ATATATATATATAA
119722156 ATATA-ATATATACA
1 ATATATATATATA-A
119722170 ATATA
1 ATATA
119722175 CACATATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATATATATATAA
Found at i:119723010 original size:15 final size:16
Alignment explanation
Indices: 119722977--119723012 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
119722967 TTTCTTCTTT
*
119722977 TTTTTTTGGGGTTAGG
1 TTTTTTTGGGGTTAAG
119722993 TTTTTTTGGGG-TAAG
1 TTTTTTTGGGGTTAAG
119723008 TTTTT
1 TTTTT
119723013 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.61
Consensus pattern (16 bp):
TTTTTTTGGGGTTAAG
Found at i:119723030 original size:17 final size:17
Alignment explanation
Indices: 119723008--119723045 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
119722998 TTGGGGTAAG
119723008 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
119723025 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
119723042 TTTT
1 TTTT
119723046 GGGTTAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:119731105 original size:40 final size:40
Alignment explanation
Indices: 119731046--119731187 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
119731036 AAATTGAATG
* *
119731046 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGACAATTATGCTAGAAACT
* * * ***
119731086 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
119731126 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
119731166 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
119731188 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:119731188 original size:40 final size:39
Alignment explanation
Indices: 119731085--119731213 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
119731075 TGCTGGAAAT
* * *
119731085 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
119731125 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
119731165 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
119731205 TATATCCGG
1 TATATCCGG
119731214 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:119736609 original size:26 final size:26
Alignment explanation
Indices: 119736580--119736633 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
119736570 ATATAATAAC
* **
119736580 TTAACATTATTTTATTATATTATTTT
1 TTAACATTAGTTTAAAATATTATTTT
*
119736606 TTAACCTTAGTTTAAAATATTATTTT
1 TTAACATTAGTTTAAAATATTATTTT
119736632 TT
1 TT
119736634 TTCAATTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (26 bp):
TTAACATTAGTTTAAAATATTATTTT
Found at i:119737400 original size:30 final size:31
Alignment explanation
Indices: 119737353--119737423 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 31
119737343 AATCTGAGTA
119737353 TTTTCTTCCACGGTGATACTTTCAAGAAAAAT
1 TTTTCTT-CACGGTGATACTTTCAAGAAAAAT
*
119737385 TTTTCTTCA-GGTGATACTTTCAAGAAAACT
1 TTTTCTTCACGGTGATACTTTCAAGAAAAAT
119737415 TTTTCTTCA
1 TTTTCTTCA
119737424 ATCTGAAACT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 29 0.76
31 2 0.05
32 7 0.18
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.42
Consensus pattern (31 bp):
TTTTCTTCACGGTGATACTTTCAAGAAAAAT
Found at i:119747992 original size:30 final size:28
Alignment explanation
Indices: 119747930--119748000 Score: 81
Period size: 30 Copynumber: 2.5 Consensus size: 28
119747920 CGTTTTTTAG
* *
119747930 TATA-AAATTTATAAAAATTAGAGAAAT
1 TATAGAAATTTATAAAAATTAAAAAAAT
*
119747957 TATAGAAATTTATAAAACTATAAAAAAAGT
1 TATAGAAATTTATAAAAAT-TAAAAAAA-T
*
119747987 TATAGAAAATTATA
1 TATAGAAATTTATA
119748001 TTAAATTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.11
28 13 0.35
29 6 0.16
30 14 0.38
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.32
Consensus pattern (28 bp):
TATAGAAATTTATAAAAATTAAAAAAAT
Found at i:119748059 original size:24 final size:24
Alignment explanation
Indices: 119748028--119748075 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
119748018 TAAATTAATA
*
119748028 AAAATTATTGAAATGTTACAAAAT
1 AAAATTATTAAAATGTTACAAAAT
* *
119748052 AAAATTATTAAAATTTTATAAAAT
1 AAAATTATTAAAATGTTACAAAAT
119748076 GATAAGTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (24 bp):
AAAATTATTAAAATGTTACAAAAT
Found at i:119748218 original size:19 final size:20
Alignment explanation
Indices: 119748170--119748226 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
119748160 TAAGGTTCAT
*
119748170 AATTTTTATAGTATTTTAATA
1 AATTTTAATAGT-TTTTAATA
*
119748191 AATTCTAATAGTTTTTAA-A
1 AATTTTAATAGTTTTTAATA
* *
119748210 ACTTTTAATAATTTTTA
1 AATTTTAATAGTTTTTA
119748227 TTTTTCTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 15 0.48
20 6 0.19
21 10 0.32
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (20 bp):
AATTTTAATAGTTTTTAATA
Found at i:119748225 original size:10 final size:10
Alignment explanation
Indices: 119748168--119748226 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
119748158 TATAAGGTTC
119748168 ATAATTTTT-
1 ATAATTTTTA
*
119748177 ATAGTATTTTA
1 ATAAT-TTTTA
* *
119748188 ATAAATTCTA
1 ATAATTTTTA
*
119748198 ATAGTTTTTA
1 ATAATTTTTA
*
119748208 A-AACTTTTA
1 ATAATTTTTA
119748217 ATAATTTTTA
1 ATAATTTTTA
119748227 TTTTTCTATA
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
9 11 0.30
10 23 0.62
11 3 0.08
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.54
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:119748238 original size:66 final size:66
Alignment explanation
Indices: 119748121--119748245 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
119748111 TCTATATATT
*
119748121 ATAAATTTCTAATAATTCTTAAAATTTTAAAATTTTCTATAAGGTTCATAATTTTTATAGTATTT
1 ATAAATTTCTAATAATTCTTAAAATTTTAAAATTTTCTAT-AGGTTCATAATTATTATAGTATTT
119748186 TA
65 TA
* * **
119748188 ATAAA-TTCTAATAGTTTTTAAAACTTTTAATAATTTT-TAT-TTTTCTATAATTATTATA
1 ATAAATTTCTAATAATTCTTAAAA-TTTTAA-AATTTTCTATAGGTTC-ATAATTATTATA
119748246 AAAATAAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
65 3 0.06
66 27 0.54
67 14 0.28
68 6 0.12
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (66 bp):
ATAAATTTCTAATAATTCTTAAAATTTTAAAATTTTCTATAGGTTCATAATTATTATAGTATTTT
A
Found at i:119748321 original size:33 final size:34
Alignment explanation
Indices: 119748243--119748321 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
119748233 TATAATTATT
119748243 ATAAA-AATAAATAAATTATATAGAAAAATTATAA
1 ATAAATAA-AAATAAATTATATAGAAAAATTATAA
* *
119748277 AAAAACT-AAAATAAAATT-TATA-AAATATTATAA
1 ATAAA-TAAAAAT-AAATTATATAGAAAAATTATAA
119748310 ATAAATAAAAAT
1 ATAAATAAAAAT
119748322 TGCTATTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
32 1 0.03
33 19 0.50
34 12 0.32
35 6 0.16
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (34 bp):
ATAAATAAAAATAAATTATATAGAAAAATTATAA
Found at i:119748608 original size:11 final size:11
Alignment explanation
Indices: 119748584--119748643 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
119748574 CTTTTTTACC
*
119748584 TTTTATAATAAT
1 TTTTCTAAT-AT
119748596 TTTTCTAATAT
1 TTTTCTAATAT
119748607 TTTTC--ATAT
1 TTTTCTAATAT
* *
119748616 TTCTCAAAATAT
1 TTTTC-TAATAT
119748628 TTTTCTAATAT
1 TTTTCTAATAT
119748639 TTTTC
1 TTTTC
119748644 ATTTTTTTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.20
11 17 0.41
12 16 0.39
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTCTAATAT
Found at i:119748992 original size:44 final size:44
Alignment explanation
Indices: 119748938--119749026 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
119748928 CTAAAAATTA
*
119748938 TGAAATAAATAATTTTTATTAGGTTAAATTTTATGACTATGTAT
1 TGAAATAAATAATTTTTAATAGGTTAAATTTTATGACTATGTAT
119748982 TGAAATAAATAATTTTTAATAGGTTAAATTTTATGACTATGTAT
1 TGAAATAAATAATTTTTAATAGGTTAAATTTTATGACTATGTAT
119749026 T
1 T
119749027 TATCAATGAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.47
Consensus pattern (44 bp):
TGAAATAAATAATTTTTAATAGGTTAAATTTTATGACTATGTAT
Found at i:119753541 original size:43 final size:43
Alignment explanation
Indices: 119753448--119753606 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
119753438 GGCTATCAAG
* *
119753448 ATGTGACTGCATGTAAGACCATGTCTGGGACATTGGAAT--TGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGAATCAT-T
*
119753490 ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGGATCATT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGAATCATT
* * * * * *
119753534 ATATGATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCGA-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGAATC-ATT
* *
119753577 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
119753607 TATGGCATTG
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.01
43 93 0.95
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGAATCATT
Found at i:119756020 original size:3 final size:3
Alignment explanation
Indices: 119756014--119756171 Score: 58
Period size: 3 Copynumber: 52.3 Consensus size: 3
119756004 TTTAGTAATT
* * * * *
119756014 TTA TTA TTA TTA CTA TTTA TTA TTA ATA CTG TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * *
119756060 CTTA -TA TT- TTA TTT TTA TTA TTA CTA CCA TT- TCTA TTT TTG TT-
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
** * * *
119756103 TT- TTA TTTA TTA TT- TATA TTA TGG TTG TTA TTA TTA TTA TTCC TCA
1 TTA TTA -TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
*
119756149 TTT TCTA TTA TTA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA TTA TTA T
119756172 GTAATTATTT
Statistics
Matches: 116, Mismatches: 27, Indels: 24
0.69 0.16 0.14
Matches are distributed among these distances:
2 10 0.09
3 93 0.80
4 13 0.11
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:119756034 original size:16 final size:16
Alignment explanation
Indices: 119756013--119756082 Score: 58
Period size: 16 Copynumber: 4.6 Consensus size: 16
119756003 TTTTAGTAAT
119756013 TTTATTATTATTACTA
1 TTTATTATTATTACTA
*
119756029 TTTATTATTAATACT-
1 TTTATTATTATTACTA
* * *
119756044 GTTATTATTACTATTA
1 TTTATTATTATTACTA
* *
119756060 CTTA-TATT-TTA-TT
1 TTTATTATTATTACTA
119756073 TTTATTATTA
1 TTTATTATTA
119756083 CTACCATTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
13 4 0.09
14 6 0.14
15 16 0.37
16 17 0.40
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (16 bp):
TTTATTATTATTACTA
Found at i:119766718 original size:18 final size:18
Alignment explanation
Indices: 119766695--119766732 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
119766685 AATATATATT
119766695 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
119766713 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
119766731 AA
1 AA
119766733 TCATAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:119766725 original size:13 final size:13
Alignment explanation
Indices: 119766709--119766733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119766699 CAAGTACCCA
119766709 ACCCAACCCAATT
1 ACCCAACCCAATT
119766722 ACCCAACCCAAT
1 ACCCAACCCAAT
119766734 CATAATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:119766769 original size:6 final size:6
Alignment explanation
Indices: 119766758--119766810 Score: 70
Period size: 6 Copynumber: 8.5 Consensus size: 6
119766748 ATAACTTAAT
* *
119766758 AAATAA AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA
119766808 AAA
1 AAA
119766811 CATATAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:119766790 original size:20 final size:20
Alignment explanation
Indices: 119766761--119766810 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
119766751 ACTTAATAAA
119766761 TAAAAATAAAAATAAAAATC
1 TAAAAATAAAAATAAAAATC
* *
119766781 TAAAACTAAAACTAAAAA--
1 TAAAAATAAAAATAAAAATC
119766799 TAAAAATAAAAA
1 TAAAAATAAAAA
119766811 CATATAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 10 0.38
20 16 0.62
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAATC
Found at i:119766843 original size:9 final size:9
Alignment explanation
Indices: 119766829--119766914 Score: 93
Period size: 9 Copynumber: 9.6 Consensus size: 9
119766819 TTTATACAAA
*
119766829 TAATTCGAT
1 TAATTCGGT
119766838 TAATTCGGT
1 TAATTCGGT
*
119766847 TAATTTGGT
1 TAATTCGGT
* *
119766856 TAATTTGGG
1 TAATTCGGT
*
119766865 TAATTCAAG-
1 TAATTC-GGT
119766874 TAATTCGGT
1 TAATTCGGT
*
119766883 TAATTCGAT
1 TAATTCGGT
*
119766892 TAATTTGGT
1 TAATTCGGT
119766901 TAATTCGGT
1 TAATTCGGT
119766910 TAATT
1 TAATT
119766915 TTATACTTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
8 1 0.02
9 63 0.97
10 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:119769393 original size:43 final size:44
Alignment explanation
Indices: 119769285--119769404 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 44
119769275 ATAATGGCAG
119769285 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACCACTAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-CACTAA
* * **
119769330 ACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTG-AA-GTTAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACACTAA
* * *
119769372 AGTCTTATCTCCTTGAAGTTGCAATGTAGCAGA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
119769405 CCGAAGATAG
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 4 0.06
43 26 0.40
44 2 0.03
45 33 0.51
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACACTAA
Found at i:119770844 original size:43 final size:44
Alignment explanation
Indices: 119770786--119770909 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 44
119770776 TTGATAGCAG
* * *
119770786 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAA
* * * ***
119770829 GTCTTATCTCCCTGAAGTTGTAGTAGAGCAGACCAAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAA
119770874 ATCTT-T-TCCCTGAAGTTGCAGTGGAGCAGATTGAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
119770910 CTATAAATAA
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
43 57 0.89
44 1 0.02
45 6 0.09
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAA
Found at i:119776779 original size:45 final size:43
Alignment explanation
Indices: 119776715--119776832 Score: 132
Period size: 45 Copynumber: 2.7 Consensus size: 43
119776705 AATGGCGGAT
*
119776715 CTTATCTCCCCGAAGTTGCAGTGAAGCAGATTGAAGCCACTAAA-C
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAG---CTAAAGC
* * * *
119776760 CTTATCTCCCTGAAGTTGCAGT-AGGGCAGGTTGAAGTTAAAGT
1 CTTATCTCCCTGAAGTTGCAGTGA-AGCAGATTGAAGCTAAAGC
*
119776803 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGA
119776833 CCAAAGATAG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
42 4 0.06
43 26 0.42
44 1 0.02
45 31 0.50
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGAAGCAGATTGAAGCTAAAGC
Found at i:119777068 original size:179 final size:179
Alignment explanation
Indices: 119776756--119777249 Score: 643
Period size: 179 Copynumber: 2.7 Consensus size: 179
119776746 TGAAGCCACT
*
119776756 AAACCTTATCTCCCTGAAGTTGCAGTAGG-GCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
1 AAACCTTATCTCTCTGAAGTTGCAGT-GGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
** * * * *
119776820 GCAGTGGAGCAGACCAAAGATAGCGAATCTTTTCCCTAAAGTTGCAGTGGAACAGTTTGAAGCTA
65 GCAGTGGAGCAGACTGAAGATAGCGAATCTTTTCCCTGAAGTTGCAGTGGAACAGATTAAAGTTA
* * * * * *
119776885 TAAATAAATAGATCTCATCTCTCTAAAGTTTCAGCAGAGCAGATCATAGC
130 TAAATAAACAGATATCATCTATCTAAAGTTGCAACAGAGCAGATCACAGC
* * *
119776935 AAACCTTATCTCTCTAAAGTTGTAGTGGAGTAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
*
119777000 TAGTGGAGC-GAACTGAAGATAGCGAATCTTTTCCCTGAAGTTGCAGTGGAACAGATTAAAGTTA
66 CAGTGGAGCAG-ACTGAAGATAGCGAATCTTTTCCCTGAAGTTGCAGTGGAACAGATTAAAGTTA
* * * *
119777064 TAAATAAACAGATATTATCTATCTTAAGTTGCAATAGAGTAGATCACAGC
130 TAAATAAACAGATATCATCTATCTAAAGTTGCAACAGAGCAGATCACAGC
* *
119777114 AAACCTTATCT-TCCTGAAGTTACAGTGGAGCAGGTTAAAGTTAAAGTCTTATCTCCCTGAAGTT
1 AAACCTTATCTCT-CTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
* * * * * * *
119777178 ACAGTGGAGCAGACTGAAAATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGGT
65 GCAGTGGAGCAGACTGAAGATAGCGAATCTT-T-TCCCTGAAGTTGCAGTGGAACAGATTAAAGT
*
119777243 TACAAAT
128 TATAAAT
119777250 TCATATCTCC
Statistics
Matches: 274, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
178 4 0.01
179 234 0.85
180 2 0.01
181 34 0.12
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (179 bp):
AAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTGAAGATAGCGAATCTTTTCCCTGAAGTTGCAGTGGAACAGATTAAAGTTAT
AAATAAACAGATATCATCTATCTAAAGTTGCAACAGAGCAGATCACAGC
Found at i:119777166 original size:43 final size:44
Alignment explanation
Indices: 119777113--119777248 Score: 168
Period size: 43 Copynumber: 3.1 Consensus size: 44
119777103 TAGATCACAG
*
119777113 CAAACCTTATCTTCCTGAAGTTACAGTGGAGCAGGTTAAAGTTA
1 CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGTTA
** * * *
119777157 -AAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAA-ATA
1 CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAG-GTTAAAGTTA
* *
119777200 GCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGGTTA
1 -CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGTTA
119777245 CAAA
1 CAAA
119777249 TTCATATCTC
Statistics
Matches: 75, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
43 32 0.43
44 11 0.15
45 32 0.43
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (44 bp):
CAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGTTA
Found at i:119777257 original size:45 final size:43
Alignment explanation
Indices: 119777113--119777259 Score: 152
Period size: 45 Copynumber: 3.3 Consensus size: 43
119777103 TAGATCACAG
* *
119777113 CAAACCTTATCTTCCTGAAGTTACAGTGGAGCAGGTTAAAGTTA
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTT-AAGTTA
* * * **
119777157 -AAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAAATA
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAG-GTTAAGTTA
* *
119777200 GCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAGGTTA
1 -CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAA-GTTA
*
119777245 CAAATTCATATCTCC
1 CAAA-TCTTATCTCC
119777260 TTTAAGTTCC
Statistics
Matches: 82, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
43 34 0.41
44 8 0.10
45 40 0.49
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAGTTA
Found at i:119778959 original size:3 final size:3
Alignment explanation
Indices: 119778953--119779143 Score: 122
Period size: 3 Copynumber: 62.3 Consensus size: 3
119778943 TCAAATTTTT
* * * *
119778953 TTA TTA TTAA TT- TTA TTA TTA TTA CTA TTTA TTA TTA ATA CTC TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
*
119778999 TTA TTA CTA TTA CTTA -TA TTTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * ** *
119779045 CCA TT- TCTA TTT TTG TTT TTA TTTA TTA TT- TATA TTA TGG TT- TTT
1 TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA T-TA TTA TTA TTA TTA
* * *
119779090 TTA TTA TTA TTCC TCA TTT TCTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
119779137 TTA TTA T
1 TTA TTA T
119779144 GATGATGATG
Statistics
Matches: 147, Mismatches: 27, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
2 8 0.05
3 121 0.82
4 18 0.12
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:119778986 original size:28 final size:27
Alignment explanation
Indices: 119778953--119779044 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 27
119778943 TCAAATTTTT
119778953 TTATTATTAATTTTATTATTATTACTA
1 TTATTATTAATTTTATTATTATTACTA
** *
119778980 TTTATTATTAATACTCTTATTATTACTA
1 -TTATTATTAATTTTATTATTATTACTA
* *
119779008 TTACTTA-TATTTATTATTATTATTATTA
1 TTA-TTATTAATT-TTATTATTATTACTA
119779036 TTATTATTA
1 TTATTATTA
119779045 CCATTTCTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
27 9 0.17
28 44 0.83
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (27 bp):
TTATTATTAATTTTATTATTATTACTA
Found at i:119779148 original size:3 final size:3
Alignment explanation
Indices: 119779142--119779179 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
119779132 TATTATTATT
119779142 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
119779180 ATAGTTATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:119781033 original size:14 final size:13
Alignment explanation
Indices: 119781016--119781056 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
119781006 ATAGGGAGAA
119781016 AATAATAAGAAAAT
1 AATAATAA-AAAAT
*
119781030 AATATTAAAAAAT
1 AATAATAAAAAAT
*
119781043 AAAAATAAAAAAT
1 AATAATAAAAAAT
119781056 A
1 A
119781057 GATTTTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (13 bp):
AATAATAAAAAAT
Found at i:119782358 original size:16 final size:15
Alignment explanation
Indices: 119782333--119782362 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
119782323 ATTAAATTAA
119782333 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
119782348 TTAATCTAAATGCAA
1 TTAA-CTAAATGCAA
119782363 AAGAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:119785521 original size:4 final size:4
Alignment explanation
Indices: 119785512--119785538 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
119785502 ACATAAAAAT
119785512 ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATA
119785539 AACATAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:119785924 original size:6 final size:6
Alignment explanation
Indices: 119785913--119785947 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
119785903 TATTAATCTA
* *
119785913 TATATC TATATC TATATT TATATT TATATT TATAT
1 TATATT TATATT TATATT TATATT TATATT TATAT
119785948 ATAATAGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (6 bp):
TATATT
Found at i:119785934 original size:12 final size:12
Alignment explanation
Indices: 119785908--119785947 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
119785898 TTTATTATTA
119785908 ATCTATATATCTAT
1 ATCTATAT-T-TAT
119785922 ATCTATATTTAT
1 ATCTATATTTAT
*
119785934 ATTTATATTTAT
1 ATCTATATTTAT
119785946 AT
1 AT
119785948 ATAATAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 16 0.64
13 1 0.04
14 8 0.32
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (12 bp):
ATCTATATTTAT
Found at i:119786314 original size:2 final size:2
Alignment explanation
Indices: 119786307--119786333 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
119786297 GTTATAATGG
119786307 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
119786334 GTATCATTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119787167 original size:16 final size:16
Alignment explanation
Indices: 119787146--119787177 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
119787136 GTCGCATCAA
119787146 TCATCATCTATTCTAG
1 TCATCATCTATTCTAG
119787162 TCATCATCTATTCTAG
1 TCATCATCTATTCTAG
119787178 CACATCTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
TCATCATCTATTCTAG
Found at i:119787230 original size:42 final size:42
Alignment explanation
Indices: 119787165--119787249 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
119787155 ATTCTAGTCA
*
119787165 TCATCTATTCTAGCACATCTTATATCTGCTGTGCGTATAGAG
1 TCATCTATTCTAGCACATCTTATATCTACTGTGCGTATAGAG
* * * *
119787207 TCATCTATTCTAGCAGATTTTATATCTATTGTGCGTATGGAG
1 TCATCTATTCTAGCACATCTTATATCTACTGTGCGTATAGAG
119787249 T
1 T
119787250 AGAAGAGAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (42 bp):
TCATCTATTCTAGCACATCTTATATCTACTGTGCGTATAGAG
Found at i:119789829 original size:17 final size:17
Alignment explanation
Indices: 119789809--119789845 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
119789799 AACCTAACCC
*
119789809 AAAAAAAAA-ACAAAGA
1 AAAAAAAAAGAAAAAGA
119789825 AAAAAAAAAGAAAAAGA
1 AAAAAAAAAGAAAAAGA
119789842 AAAA
1 AAAA
119789846 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:119789844 original size:11 final size:11
Alignment explanation
Indices: 119789812--119789845 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
119789802 CTAACCCAAA
119789812 AAAAAAACAAAG
1 AAAAAAA-AAAG
119789824 AAAAAAAAAAG
1 AAAAAAAAAAG
119789835 AAAAAGAAAAA
1 AAAAA-AAAAA
119789846 CTTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:119797228 original size:40 final size:40
Alignment explanation
Indices: 119797101--119797228 Score: 125
Period size: 40 Copynumber: 3.2 Consensus size: 40
119797091 ATGCTGGAAA
* * * * *
119797101 TTATATCCGGGTTAAGACCCGAAGGTAATTGTGCTATTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
119797141 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
119797181 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
119797221 TTATATCC
1 TTATATCC
119797229 ATTATATTCC
Statistics
Matches: 68, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
39 2 0.03
40 66 0.97
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:119805140 original size:40 final size:40
Alignment explanation
Indices: 119805055--119805205 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
119805045 AATTGAATGA
* * *
119805055 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
119805095 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
119805136 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
119805175 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
119805206 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:119805219 original size:40 final size:40
Alignment explanation
Indices: 119805092--119805221 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
119805082 ATGCTGGAAA
* * * *
119805092 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
119805132 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
119805172 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
119805212 TTATATCCGG
1 TTATATCCGG
119805222 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:119809038 original size:15 final size:15
Alignment explanation
Indices: 119809018--119809048 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
119809008 GAGTGTGGTT
119809018 ATACTATATGTATAA
1 ATACTATATGTATAA
119809033 ATACTATATGTATAA
1 ATACTATATGTATAA
119809048 A
1 A
119809049 GCTAGATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
ATACTATATGTATAA
Found at i:119811601 original size:27 final size:27
Alignment explanation
Indices: 119811553--119811719 Score: 194
Period size: 27 Copynumber: 6.2 Consensus size: 27
119811543 CTAGATCCCA
* * *
119811553 TATGTGGTAACATAACTCTTTTGCCCC
1 TATGTGGTAAAATGACTGTTTTGCCCC
119811580 TATGTGGTAAAATGACTGTTTTGCCCC
1 TATGTGGTAAAATGACTGTTTTGCCCC
* * *
119811607 TATGTTGTAAAATGA-TGATTTTACCCT
1 TATGTGGTAAAATGACTG-TTTTGCCCC
119811634 TATGTGGTAAAATGACTGTTTTGCCCC
1 TATGTGGTAAAATGACTGTTTTGCCCC
* * * *
119811661 TATGTGGTGAAATGACTATTTTACCCT
1 TATGTGGTAAAATGACTGTTTTGCCCC
* * *
119811688 TATATGGTAAGATGACTGCTTTG-CCC
1 TATGTGGTAAAATGACTGTTTTGCCCC
119811714 TATGTG
1 TATGTG
119811720 ATGTATATAT
Statistics
Matches: 117, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.08
27 106 0.91
28 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (27 bp):
TATGTGGTAAAATGACTGTTTTGCCCC
Found at i:119811644 original size:54 final size:54
Alignment explanation
Indices: 119811553--119811719 Score: 221
Period size: 54 Copynumber: 3.1 Consensus size: 54
119811543 CTAGATCCCA
* * * * *
119811553 TATGTGGTAACATAACTCTTTTGCCCCTATGTGGTAAAATGACTGTTTTGCCCC
1 TATGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCC
*
119811607 TATGTTGTAAAATGA-TGATTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCC
1 TATGTGGTAAAATGACT-ATTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCC
* * * *
119811661 TATGTGGTGAAATGACTATTTTACCCTTATATGGTAAGATGACTGCTTTG-CCC
1 TATGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCC
119811714 TATGTG
1 TATGTG
119811720 ATGTATATAT
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
53 10 0.10
54 89 0.89
55 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (54 bp):
TATGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACTGTTTTGCCCC
Found at i:119815478 original size:54 final size:53
Alignment explanation
Indices: 119815378--119815528 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 53
119815368 TATACCCATG
* * * *
119815378 TGTGGTAAAGTGACTTTTTTCCCCTATGTGGTAAAATAACTATTTTGC-CCTTA
1 TGTGGTAAAATGACTTTTTTCCCCTATATGGTAAAATGACTGTTTTGCTCC-TA
* *
119815431 TGTGGTAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCTCCTA
1 TGTGGTAAAATGACT-TTTTTCCCCTATATGGTAAAATGACTGTTTTGCTCCTA
* * * * *
119815485 TATGGTAAAAAGACTATTTTTCTCGTATATGGTAAGATGACTGT
1 TGTGGTAAAATGACT-TTTTTCCCCTATATGGTAAAATGACTGT
119815529 GTAACAGCTC
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 14 0.17
54 67 0.81
55 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.40
Consensus pattern (53 bp):
TGTGGTAAAATGACTTTTTTCCCCTATATGGTAAAATGACTGTTTTGCTCCTA
Found at i:119815513 original size:27 final size:27
Alignment explanation
Indices: 119815380--119815526 Score: 152
Period size: 27 Copynumber: 5.5 Consensus size: 27
119815370 TACCCATGTG
* * *
119815380 TGGTAAAGTGACT-TTTTTCCCCTATG
1 TGGTAAAATGACTATTTTGCCCCTATA
* * *
119815406 TGGTAAAATAACTATTTTGCCCTTATG
1 TGGTAAAATGACTATTTTGCCCCTATA
* *
119815433 TGGTAAAATGACTGTTTTGCCCTTATA
1 TGGTAAAATGACTATTTTGCCCCTATA
* *
119815460 TGGTAAAATGACTGTTTTGCTCCTATA
1 TGGTAAAATGACTATTTTGCCCCTATA
* * * *
119815487 TGGTAAAAAGACTATTTTTCTCGTATA
1 TGGTAAAATGACTATTTTGCCCCTATA
*
119815514 TGGTAAGATGACT
1 TGGTAAAATGACT
119815527 GTGTAACAGC
Statistics
Matches: 105, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 11 0.10
27 94 0.90
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.40
Consensus pattern (27 bp):
TGGTAAAATGACTATTTTGCCCCTATA
Found at i:119815518 original size:81 final size:80
Alignment explanation
Indices: 119815380--119815528 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 80
119815370 TACCCATGTG
* * * * *
119815380 TGGTAAAGTGACTTTTTTCCCCTATGTGGTAAAATAACTATTTTGCCCTTATGTGGTAAAATGAC
1 TGGTAAAATGACTTTTTGCCCCTATATGGTAAAATAACTATTTTGCCCGTATATGGTAAAATGAC
119815445 TGTTTTGCCCTTATA
66 TGTTTTGCCCTTATA
* * * *
119815460 TGGTAAAATGACTGTTTTGCTCCTATATGGTAAAA-AGACTATTTTTCTCGTATATGGTAAGATG
1 TGGTAAAATGACT-TTTTGCCCCTATATGGTAAAATA-ACTATTTTGCCCGTATATGGTAAAATG
119815524 ACTGT
64 ACTGT
119815529 GTAACAGCTC
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
80 13 0.22
81 45 0.78
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (80 bp):
TGGTAAAATGACTTTTTGCCCCTATATGGTAAAATAACTATTTTGCCCGTATATGGTAAAATGAC
TGTTTTGCCCTTATA
Found at i:119817873 original size:28 final size:28
Alignment explanation
Indices: 119817841--119817939 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
119817831 GCCATAAGCC
*
119817841 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
119817869 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
119817897 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
119817926 CGCACACTTAGTGC
1 CGCACACTTAGTGC
119817940 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:119821799 original size:30 final size:30
Alignment explanation
Indices: 119821741--119821799 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
119821731 ATTTTCAGGC
* **
119821741 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
119821771 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
119821800 ATATAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:119822193 original size:46 final size:45
Alignment explanation
Indices: 119822135--119822306 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 45
119822125 GGGTTATTGT
*
119822135 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG--ACATTGATGA
119822181 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGGGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGACATT--GATGA
* * * *
119822229 GTGCTAGTGTAAGACATGTCTGGCACATGCATC-GACCTTGA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGACATTGATGA
*
119822272 CGTAAGCCAGTGTAAGACATGTCTCGGACATGCAT
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCAT
119822307 TACGAAATGT
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
45 5 0.05
46 48 0.44
47 27 0.25
48 23 0.21
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGACATTGATGA
Found at i:119825659 original size:5 final size:5
Alignment explanation
Indices: 119825628--119825657 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
119825618 TGATTATGTG
*
119825628 ATTTT ATTTT ATTTT ATTTT ATTTT GTTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
119825658 GTATTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:119826337 original size:707 final size:693
Alignment explanation
Indices: 119824733--119827435 Score: 3171
Period size: 707 Copynumber: 4.0 Consensus size: 693
119824723 GGGTGTTACA
119824733 AAATTGC-GCTCACATTGGTCTGGACCTTTCAAAGTTGTCGAAGTATTTCCTCATGGTGCAGTCA
1 AAATTGCAG-TCACATTGGTCTGGACCTTTCAAAGTTGTCGAAGTATTTCCTCATGGTGCAGTCA
* *
119824797 CAATCAGAGATTTACATGATGGACACTAGTTCAAAGTGAAAT-GACAATGGTTGAAACACT-TTA
65 CAATCAGAGATTTACATGATGGACACCAGTTCAAAGTG-AATGGACAACGGTTGAAACACTATT-
*
119824860 TTGGGAATATTAATCAAAAGCAGGAAGAGACCATTAAATTAGTCTAAAAATTTTAATTTTTATTG
128 TTGGGAATATTAATCAAAAGCAGGAAGAGACCATTAAATTGGTCTAAAAATTTTAATTTTTATTG
* *
119824925 AATTTATCATCATGTG----ATTTTATTTTATTTTTTTGTTTTTGTTCAAGTTTGTTTTAC---T
193 AATTTATCATTATGTGTTTTATTTTATTTTATTTTTTTGTTTTTGTTCAAGTTTGTTTTTCTTTT
* * *
119824983 TCTTTTTTTTCCAGAATAATTTGGTACCATTGTCGATGCACTTGGGCTTTATTGTCAACGCAGTT
258 TCTTTTTTTTTCAGAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATTGTCAACGCAGTT
* * * * *
119825048 CCTACTATTGTATTGTCACTTATGACTCATCAAGAAAGAGGGCATA-TAAAAGATTTTAGATCTC
323 CGTACTATTGTACTGTCACTTATGACTCATCAAGAATGAGGGCATATTAAAA-ATTTCAGATCCC
* * * *
119825112 ATCATTTGATCAAAAGTTACCTAGCCGTCTGATCTGTCTCAGCGGGCACAATTCTCATTGGACAT
387 ATCGTTTGATCAAAAGTGACCTAGCCGTCTGATCTGTCTGAGCGGGCACAATTCTCATTCGACAT
* * *
119825177 ATTTATTCCTGCCAGCTTTATATCCCTTCACAAAACTCACGCCTTTCCATCTTCTTCCGTTACTG
452 ATTTATTCCTGCCAGATTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTCCGCTACTG
* * * *
119825242 GAAAGAAAAGGTTGTTGGATATCACTGAACTAGAGGAGATTAGGCGAAATGCCTATGTAAACT-C
517 GAAAGAAAAGGCTGTTGGATATCACTAAACTAGAGAAGATTAGGCGAAATGCCTATG-AAAATGC
* * * * * * * **
119825306 TACAATTTACAAGGAAAAGACCAGACAATGGCAGGATAGAAGTATTTTGTAGTGACAATTTATCG
581 TGCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCAACAATTTATCG
* * *
119825371 CGGGTCAACAAATTTTATTATTCAATTCTAGACTAAATTTGTACTCAAGT
646 CGGGTCAACAAGTTTTATTATTCAATTCTAGACTAAA-TTGCAC-CCAGT
* * * * *
119825421 AAATTGTACTCACATTGGTTTGGACCTTTCAAAGTTGTC-AAGATATTTCTTCATGGTG-AGTTA
1 AAATTGCAGTCACATTGGTCTGGACCTTTCAAAGTTGTCGAAG-TATTTCCTCATGGTGCAGTCA
* * * * *
119825484 GAATTAGAGATTTACATGATTGACACCAGTTCAAAGTGAATGGATAACGGTTGAAACACCATTTT
65 CAATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGACAACGGTTGAAACACTATTTT
* *
119825549 GGGAATATTAATCAAAAGCAGGCAA-AGACCATTAAATTGGTCAAAAAATTTTAATTTTTACTGA
130 GGGAATATTAATCAAAAGCAGG-AAGAGACCATTAAATTGGTCTAAAAATTTTAATTTTTATTGA
*
119825613 ATTTATGATTATGTGATTTTATTTTATTTTATTTTATTTTGTTTTGTATTTTGTTCAAGTTTGTT
194 ATTTATCATTATGTG------TTTTATTTTATTTTA-TTT-TTTTGT-TTTTGTTCAAGTTTG--
*
119825678 TTTCTTCTTCTTTCTTTTTTTTTTAGAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATT
248 TTT-TTCTT-TTTCTTTTTTTTTCAGAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATT
* * * *
119825743 GTCAATGCAGTTCGTACTATTGTACTGTAACTTATGAATCATCAAGAATGAGGGCATATTAGAAA
311 GTCAACGCAGTTCGTACTATTGTACTGTCACTTATGACTCATCAAGAATGAGGGCATATTAAAAA
* * * **
119825808 TTTCAGATCCCATCGTTTGATCAAAATTGACCTAGCCATCTGATTTGTCTGAGCGGGCGTAATTC
376 TTTCAGATCCCATCGTTTGATCAAAAGTGACCTAGCCGTCTGATCTGTCTGAGCGGGCACAATTC
*
119825873 TCATTCGACATATTTATT-CTCGTCA-ATTTCATATCCCTTCACAAAAGTCACGCCTTTCCATCT
441 TCATTCGACATATTTATTCCT-GCCAGATTT-ATATCCCTTCACAAAAGTCACGCCTTTCCATCT
* *
119825936 TCTTCCGCTACTGGAAAGAAAAGGCTGTTGGGTATCACTGAACTAGAGAAGATTAGGCGAAATGC
504 TCTTCCGCTACTGGAAAGAAAAGGCTGTTGGATATCACTAAACTAGAGAAGATTAGGCGAAATGC
* *
119826001 CTATGAAAATGATGCAATTTACAAGGAAAAGACCAAACGATGGCATGATAGAATTATTTTGCAGC
569 CTATGAAAATGCTGCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGC
* * *
119826066 AACAATTTATCACAGGTCAACAAGTTTTATTATTCAATTC-ACAACTGAAATTGCACCCAGGT
634 AACAATTTATCGCGGGTCAACAAGTTTTATTATTCAATTCTA-GACT-AAATTGCACCCA-GT
* * *
119826128 AAATTGCAGTCACATTAGTCTGGACCTTTCGAAGTTGTCGAAGTATTTCCTTATGGTGCAGTCAC
1 AAATTGCAGTCACATTGGTCTGGACCTTTCAAAGTTGTCGAAGTATTTCCTCATGGTGCAGTCAC
* *
119826193 AATCAGAGATTTACGTGATGGACACCAGTTCAAAGTGAATGGACAACGGTTGAAACATTATTTTG
66 AATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGACAACGGTTGAAACACTATTTTG
* * *
119826258 GGAATATTAATCAAAAGCAGGTAGAGACCATTAAATTGGT-TGAAATTTTTAATTTTTATTGAAT
131 GGAATATTAATCAAAAGCAGGAAGAGACCATTAAATTGGTCTAAAAATTTTAATTTTTATTGAAT
* * ** * *
119826322 TTTTAATTATGTGATTTTATTTTATTTTATTTTGTTTTGTTTTCATTCAAGTTTGTTTTAC-TTG
196 TTATCATTATGTG-TTTTATTTTATTTTA-TTT-TTTTGTTTTTGTTCAAGTTTGTTTTTCTTTT
119826386 T-TTTTTTTTTCAGAATAATTAGGTACCATTGT-------C----G----A---T----GCAGTT
258 TCTTTTTTTTTCAGAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATTGTCAACGCAGTT
** * * * * *
119826428 CGTACTATTGTACTACCACTTATGACTCATCAAGAATTAAGGCATATAAAAAATTTTAAATCCCA
323 CGTACTATTGTACTGTCACTTATGACTCATCAAGAATGAGGGCATATTAAAAATTTCAGATCCCA
* *
119826493 -CAGTTTGATCAAAAGTGACCTAGCCGTCTGATCTGTCTGAGCGGACACAATTCTCATTGGACAT
388 TC-GTTTGATCAAAAGTGACCTAGCCGTCTGATCTGTCTGAGCGGGCACAATTCTCATTCGACAT
* *
119826557 ATTTATTCCTGCCA-ACTTTATATCCCTTCACAAAAGTCATGCCTTTCCATCTTCTT-CGTTACT
452 ATTTATTCCTGCCAGA-TTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTCCGCTACT
* * * * * *
119826620 GGAAAGAAAAGGTTGTCGGATATCACTAAACTAGAGGAGATTAGGCAAAATGCATATAAAAATGC
516 GGAAAGAAAAGGCTGTTGGATATCACTAAACTAGAGAAGATTAGGCGAAATGCCTATGAAAATGC
* * * *
119826685 TGCAATTTACAAGGAAAAGACCAAATGATAGCATGACAGAATTATTTTCCAGCGACAATTTATCG
581 TGCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCAACAATTTATCG
* *
119826750 TGGGTCAACAAGTTTTATTATTCAATTCTAGACTAAAATTGCATCCAG-
646 CGGGTCAACAAGTTTTATTATTCAATTCTAGACT-AAATTGCACCCAGT
* * * * * *
119826798 -----GCAGTCACATCGGTTTGGACCTTTCGAAGTTGTCAAAGTATTTTCTCATGGTGTAGTCAC
1 AAATTGCAGTCACATTGGTCTGGACCTTTCAAAGTTGTCGAAGTATTTCCTCATGGTGCAGTCAC
* * *
119826858 AATCAGAGATTTACATGATGGACATCAGTTCAAAGTGAATGGA-AAGCAGATGAAACACTATTTT
66 AATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGACAA-CGGTTGAAACACTATTTT
* *
119826922 GGGAATATTAATCAAAAGTAAGAAGAGACCATTAAATTGGTC--AAAA----AA---TTA--GAA
130 GGGAATATTAATCAAAAGCAGGAAGAGACCATTAAATTGGTCTAAAAATTTTAATTTTTATTGAA
* * * ** **** * * *
119826976 ATTACCATTATGTGATTTT-TTTTGTTTT-TTTAATTCAAATTGTTTC-A-CTT-CTTTT-TATT
195 TTTATCATTATGTG-TTTTATTTTATTTTATTTTTTTGTTTTTG-TTCAAGTTTGTTTTTCTTTT
* * * * * *
119827035 T-TTATTTTTGCTGAATAATTAGGAACCATTGTCGACTCACTTGGGCTTTATTGTCAACGCAATT
258 TCTTTTTTTTTCAGAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATTGTCAACGCAGTT
* ** *
119827099 CGTACTATTGTACT-TCCCTTATGACTCATTGAGAATGAGGGCA-ATTAGAAATTTCAGATCCCA
323 CGTACTATTGTACTGTCACTTATGACTCATCAAGAATGAGGGCATATTAAAAATTTCAGATCCCA
* * *
119827162 CCGTTTGATCAAAAGTGACCTAGCTGTCTGATCTGTCTGAGCGGGCACAATTCTCATTCAACATA
388 TCGTTTGATCAAAAGTGACCTAGCCGTCTGATCTGTCTGAGCGGGCACAATTCTCATTCGACATA
** *
119827227 TTTATTCCCACCAGATTTATATATCCCTTCACAAAAGTCACACCTTTCCATCTTCTTCCGCTACT
453 TTTATTCCTGCCAGA-TT-TATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTCCGCTACT
* * * *
119827292 GGAAAGAAAAGGCTATTAGATATCACTAAACTAGAGAAGATTAGGTGAAATGCCTAAGAAAATGC
516 GGAAAGAAAAGGCTGTTGGATATCACTAAACTAGAGAAGATTAGGCGAAATGCCTATGAAAATGC
* * *
119827357 TGCAATTTACAAGG-AAAGACAAAACGATGGCATGACAGAATTATTTTGTA-CTAATAATTTATC
581 TGCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGC-AACAATTTATC
*
119827420 GGGGGTCAACAAGTTT
645 GCGGGTCAACAAGTTT
119827436 GTGGGTGCAA
Statistics
Matches: 1738, Mismatches: 207, Indels: 157
0.83 0.10 0.07
Matches are distributed among these distances:
649 32 0.02
650 2 0.00
651 4 0.00
652 6 0.00
654 8 0.00
655 18 0.01
656 1 0.00
657 3 0.00
660 3 0.00
664 6 0.00
665 147 0.08
667 1 0.00
669 86 0.05
670 28 0.02
671 111 0.06
672 237 0.14
673 164 0.09
674 5 0.00
677 1 0.00
680 1 0.00
684 1 0.00
686 3 0.00
687 129 0.07
688 54 0.03
695 30 0.02
696 2 0.00
697 12 0.01
698 5 0.00
699 9 0.01
700 15 0.01
701 13 0.01
702 30 0.02
703 2 0.00
706 12 0.01
707 447 0.26
708 110 0.06
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (693 bp):
AAATTGCAGTCACATTGGTCTGGACCTTTCAAAGTTGTCGAAGTATTTCCTCATGGTGCAGTCAC
AATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGACAACGGTTGAAACACTATTTTG
GGAATATTAATCAAAAGCAGGAAGAGACCATTAAATTGGTCTAAAAATTTTAATTTTTATTGAAT
TTATCATTATGTGTTTTATTTTATTTTATTTTTTTGTTTTTGTTCAAGTTTGTTTTTCTTTTTCT
TTTTTTTTCAGAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATTGTCAACGCAGTTCGT
ACTATTGTACTGTCACTTATGACTCATCAAGAATGAGGGCATATTAAAAATTTCAGATCCCATCG
TTTGATCAAAAGTGACCTAGCCGTCTGATCTGTCTGAGCGGGCACAATTCTCATTCGACATATTT
ATTCCTGCCAGATTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTCCGCTACTGGAAA
GAAAAGGCTGTTGGATATCACTAAACTAGAGAAGATTAGGCGAAATGCCTATGAAAATGCTGCAA
TTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCAACAATTTATCGCGGGT
CAACAAGTTTTATTATTCAATTCTAGACTAAATTGCACCCAGT
Found at i:119831263 original size:39 final size:40
Alignment explanation
Indices: 119831211--119831402 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
119831201 GGATATAGCT
* *
119831211 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
119831251 ACTCGCAC-AATGCCTTCGGGACTTAAACCCAGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTT-AGCCC-GGTTATAGTA
* * *
119831291 ACTTGCACCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * * *
119831330 ACTCTCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
119831370 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
119831403 ATATCATTCG
Statistics
Matches: 124, Mismatches: 18, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
38 3 0.02
39 39 0.31
40 41 0.33
41 38 0.31
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:119831290 original size:40 final size:39
Alignment explanation
Indices: 119831211--119831401 Score: 181
Period size: 39 Copynumber: 4.8 Consensus size: 39
119831201 GGATATAGCT
* * *
119831211 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATT-TAGTA
*
119831251 ACTCGCAC-AATGCCTTCGGGACTTAAACCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTT-AGCCC-GATTTAGTA
* * *
119831291 ACTTGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTTAGTA
* * * *
119831330 ACTCTCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTA
* *
119831370 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
119831402 GATATCATTC
Statistics
Matches: 124, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.02
39 42 0.34
40 42 0.34
41 35 0.28
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTTAGTA
Done.