Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 392 of 770
Found at i:120372582 original size:14 final size:14
Alignment explanation
Indices: 120372563--120372590 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
120372553 TATATTAGTA
120372563 TTTTCTATTCTATT
1 TTTTCTATTCTATT
120372577 TTTTCTATTCTATT
1 TTTTCTATTCTATT
120372591 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:120372598 original size:6 final size:6
Alignment explanation
Indices: 120372587--120372665 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
120372577 TTTTCTATTC
* *
120372587 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
120372634 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
120372666 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:120372613 original size:11 final size:11
Alignment explanation
Indices: 120372588--120372669 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
120372578 TTTCTATTCT
120372588 ATTAGTATTAG
1 ATTAGTATTAG
120372599 ---AGTATTAG
1 ATTAGTATTAG
**
120372607 ATTAGTATTCT
1 ATTAGTATTAG
*
120372618 ATT-CTATTAG
1 ATTAGTATTAG
120372628 TATTAG-ATTAG
1 -ATTAGTATTAG
120372639 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
120372654 ATTAGTATTAG
1 ATTAGTATTAG
120372665 -TTAGT
1 ATTAGT
120372670 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:120372654 original size:20 final size:21
Alignment explanation
Indices: 120372624--120372669 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
120372614 TTCTATTCTA
120372624 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
120372645 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
120372665 TTAGT
1 TTAGT
120372670 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:120380885 original size:32 final size:32
Alignment explanation
Indices: 120380844--120380905 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
120380834 CATCTATTTT
120380844 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
120380876 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
120380906 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:120388218 original size:13 final size:13
Alignment explanation
Indices: 120388200--120388227 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
120388190 TGAAAATTCG
120388200 TTAATGGTACATT
1 TTAATGGTACATT
120388213 TTAATGGTACATT
1 TTAATGGTACATT
120388226 TT
1 TT
120388228 CCCCTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
TTAATGGTACATT
Found at i:120398157 original size:21 final size:21
Alignment explanation
Indices: 120398133--120398176 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
120398123 GAATCTTTAG
*
120398133 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
120398154 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
120398175 TA
1 TA
120398177 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:120400435 original size:22 final size:22
Alignment explanation
Indices: 120400408--120400451 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
120400398 CTCTCGATTT
120400408 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
120400430 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
120400452 AAAGAGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTATTGCTCCTTTTCAATCA
Found at i:120404606 original size:32 final size:32
Alignment explanation
Indices: 120404570--120404631 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
120404560 AGCTTTTGGT
120404570 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
120404602 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
120404632 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:120412818 original size:6 final size:6
Alignment explanation
Indices: 120412807--120412885 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
120412797 GGGATCACTA
120412807 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
120412850 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
120412886 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:120412829 original size:20 final size:21
Alignment explanation
Indices: 120412803--120412848 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
120412793 AGCCGGGATC
120412803 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
120412824 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
120412844 ACTAA
1 ACTAA
120412849 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:120412873 original size:11 final size:11
Alignment explanation
Indices: 120412803--120412849 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
120412793 AGCCGGGATC
120412803 ACTAA-CTAAT
1 ACTAATCTAAT
120412813 ACTAATCTAAT
1 ACTAATCTAAT
120412824 -CTAA-CTAAT
1 ACTAATCTAAT
120412833 ACTAATCTAAT
1 ACTAATCTAAT
120412844 ACTAAT
1 ACTAAT
120412850 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:120412899 original size:14 final size:14
Alignment explanation
Indices: 120412882--120412909 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
120412872 CTCTAATACT
120412882 AATAGAATAGAAAA
1 AATAGAATAGAAAA
120412896 AATAGAATAGAAAA
1 AATAGAATAGAAAA
120412910 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:120421229 original size:18 final size:18
Alignment explanation
Indices: 120421150--120421243 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
120421140 CAAGGTCACG
*
120421150 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
120421168 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
120421186 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
120421204 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
120421222 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
120421237 ATCAATA
1 ATCAATA
120421244 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:120421230 original size:9 final size:9
Alignment explanation
Indices: 120421150--120421230 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
120421140 CAAGGTCACG
*
120421150 ATCAATAGC
1 ATCAATATC
* *
120421159 GTCACTATC
1 ATCAATATC
*
120421168 ATCAATAGC
1 ATCAATATC
* * *
120421177 GTCACTAGC
1 ATCAATATC
120421186 ATCAATATC
1 ATCAATATC
* * *
120421195 GTCACTAGC
1 ATCAATATC
120421204 ATCAATATC
1 ATCAATATC
* *
120421213 GTCACTATC
1 ATCAATATC
120421222 ATCAATATC
1 ATCAATATC
120421231 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:120423613 original size:21 final size:21
Alignment explanation
Indices: 120423583--120423670 Score: 97
Period size: 21 Copynumber: 4.1 Consensus size: 21
120423573 ACTCACAAAG
* *
120423583 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
120423603 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
120423624 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
120423645 AAAAAGAACGAAGTGACTTAGAC
1 AAAAAG-A-GAAGTAACTTAGAC
120423668 AAA
1 AAA
120423671 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
22 1 0.02
23 15 0.26
ACGTcount: A:0.53, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:120440031 original size:23 final size:23
Alignment explanation
Indices: 120439989--120440089 Score: 116
Period size: 23 Copynumber: 4.4 Consensus size: 23
120439979 TCAGCTCGTA
* *
120439989 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACCG-TTTCAGCTCAAT
*
120440013 GGAGCTTACCGTTTCAGCTC-AT
1 AGAGCTTACCGTTTCAGCTCAAT
* *
120440035 ATGAGCTTACTG-TTCAGCTCAAA
1 A-GAGCTTACCGTTTCAGCTCAAT
*
120440058 AGAGCTTACCGTTTTAGCTCAAT
1 AGAGCTTACCGTTTCAGCTCAAT
120440081 AGAGCTTAC
1 AGAGCTTAC
120440090 TATTCATCAG
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
22 18 0.28
23 38 0.58
24 9 0.14
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (23 bp):
AGAGCTTACCGTTTCAGCTCAAT
Found at i:120440066 original size:45 final size:45
Alignment explanation
Indices: 120439979--120440114 Score: 139
Period size: 45 Copynumber: 2.9 Consensus size: 45
120439969 TACTAATATA
* * ***
120439979 TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGTT
1 TCAGCTCATATGAGCTTACTG--TTCAGCTCAAAAGAGCTTACCGTT
120440026 TCAGCTCATATGAGCTTACTGTTCAGCTCAAAAGAGCTTACCGTT
1 TCAGCTCATATGAGCTTACTGTTCAGCTCAAAAGAGCTTACCGTT
* *
120440071 TTAGCTCA-ATAGAGCTTACTATTCATCAGCTCAAGAAGAGCTTA
1 TCAGCTCATAT-GAGCTTACT-GT--TCAGCTCAA-AAGAGCTTA
120440115 TCGAATATGG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
44 2 0.03
45 37 0.48
46 1 0.01
47 19 0.25
48 9 0.12
49 9 0.12
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (45 bp):
TCAGCTCATATGAGCTTACTGTTCAGCTCAAAAGAGCTTACCGTT
Found at i:120442121 original size:28 final size:28
Alignment explanation
Indices: 120442056--120442156 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
120442046 ATAGTGAATC
*
120442056 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
120442085 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
120442113 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
120442143 CGCACACTTAGTGC
1 CGCACACTTAGTGC
120442157 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:120450072 original size:28 final size:28
Alignment explanation
Indices: 120450007--120450107 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
120449997 ATAGTGAATC
*
120450007 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
120450036 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
120450064 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
120450094 CGCACACTTAGTGC
1 CGCACACTTAGTGC
120450108 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:120459761 original size:27 final size:28
Alignment explanation
Indices: 120459705--120459774 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
120459695 AAATTTGTAC
120459705 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
120459733 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
120459760 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
120459775 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:120459851 original size:14 final size:14
Alignment explanation
Indices: 120459832--120459863 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
120459822 TTATTGAGTT
120459832 GATCACGGACAGCG
1 GATCACGGACAGCG
120459846 GATCACGGACAGCG
1 GATCACGGACAGCG
120459860 GATC
1 GATC
120459864 GAGTACCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.34, T:0.09
Consensus pattern (14 bp):
GATCACGGACAGCG
Found at i:120465514 original size:49 final size:49
Alignment explanation
Indices: 120465436--120465644 Score: 280
Period size: 49 Copynumber: 4.3 Consensus size: 49
120465426 CTACGGGACT
* * * * *
120465436 TATCACAT-T-TATACA-CTTCCACATCCATCACTTTGGCCACTCGGCCC
1 TATCACATATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCC
* *
120465483 TATCACATATATATACACCTTCTCATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCC
* *
120465532 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCC
* * *
120465581 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCC
120465630 TATCACATATATATA
1 TATCACATATATATA
120465645 TCTCATACAT
Statistics
Matches: 146, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 8 0.05
48 1 0.01
49 134 0.92
50 3 0.02
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:120465608 original size:98 final size:98
Alignment explanation
Indices: 120465434--120465642 Score: 314
Period size: 98 Copynumber: 2.2 Consensus size: 98
120465424 GCCTACGGGA
* * * * *
120465434 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGCCCTATCACATATATAT
1 CTTATCACATATATACACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
120465497 ACACCTTCTCATTCATCACATCGGCCATTAGGC
66 ACACCTTCACATTCATCACATCGGCCATTAGGC
* * *
120465530 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 CTTATCACATATATACACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
120465595 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACCTTCACATTCATCACATCGGCCATTAGGC
120465628 CTTATCACATATATA
1 CTTATCACATATATA
120465643 TATCTCATAC
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 10 0.10
97 1 0.01
98 90 0.89
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (98 bp):
CTTATCACATATATACACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACACCTTCACATTCATCACATCGGCCATTAGGC
Found at i:120467868 original size:25 final size:25
Alignment explanation
Indices: 120467831--120467882 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
120467821 AAGGGATTTA
120467831 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
120467856 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
120467881 CA
1 CA
120467883 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:120468102 original size:40 final size:40
Alignment explanation
Indices: 120468058--120468209 Score: 243
Period size: 40 Copynumber: 3.8 Consensus size: 40
120468048 CCAGCATGAT
* *
120468058 TGCTCTTCGGGACCTAG-CCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCC-GGATACATCACTAGCACGAA
*
120468098 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
120468138 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
120468178 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
120468210 CTCAATTCTC
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 102 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:120470413 original size:49 final size:49
Alignment explanation
Indices: 120470333--120470541 Score: 296
Period size: 49 Copynumber: 4.3 Consensus size: 49
120470323 CCCTTCGGGA
* * * * * * *
120470333 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* ** * *
120470380 CCTATCACATATATGTACACCTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
120470429 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
120470478 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
120470527 CTTATCACATATATA
1 CTTATCACATATATA
120470542 TATCTCATAC
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 9 0.06
48 1 0.01
49 135 0.93
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:120474399 original size:93 final size:93
Alignment explanation
Indices: 120474287--120474458 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
120474277 GCCCATAAGT
* *
120474287 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
120474352 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
120474380 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
120474445 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
120474459 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:120474454 original size:46 final size:46
Alignment explanation
Indices: 120474279--120474454 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
120474269 TGTAACCCGC
* * *
120474279 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
120474325 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
120474375 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
120474418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
120474455 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:120476877 original size:29 final size:29
Alignment explanation
Indices: 120476838--120476925 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
120476828 CAAAGATAAC
*
120476838 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
120476867 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
120476896 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
120476926 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:120476896 original size:15 final size:15
Alignment explanation
Indices: 120476838--120476916 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
120476828 CAAAGATAAC
*
120476838 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
120476852 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
120476867 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
120476881 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
120476896 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
120476911 AAGAAA
1 AAGAAA
120476917 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:120476925 original size:15 final size:15
Alignment explanation
Indices: 120476849--120476925 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
120476839 AGAAAACCGA
120476849 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
120476864 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
120476878 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
120476892 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
120476908 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
120476923 ATA
1 ATA
120476926 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:120479984 original size:93 final size:93
Alignment explanation
Indices: 120479872--120480043 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
120479862 GCCCATAAGT
* *
120479872 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
120479937 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
120479965 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
120480030 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
120480044 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:120480039 original size:46 final size:46
Alignment explanation
Indices: 120479864--120480039 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
120479854 TGTAACCCGC
* * *
120479864 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
120479910 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
120479960 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
120480003 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
120480040 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:120487726 original size:27 final size:28
Alignment explanation
Indices: 120487670--120487731 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
120487660 AAACTTGTAC
120487670 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
120487698 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
120487725 AGCACTA
1 AGCACTA
120487732 TGTAACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 16 0.48
28 17 0.52
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:120488806 original size:27 final size:27
Alignment explanation
Indices: 120488730--120488848 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
120488720 TTTAGTTTAC
*
120488730 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACCGAAATACCCTCGA-TTTG
* *
120488757 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* * *
120488784 TAAATTTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
120488811 TAAAATTACC-AAAGTACCCTCGATTTA
1 TAAAATTACCGAAA-TACCCTCGATTTG
*
120488838 CAAAATTACCG
1 TAAAATTACCG
120488849 TTTTACCCCT
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.04
27 72 0.95
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:120489063 original size:27 final size:27
Alignment explanation
Indices: 120488825--120489063 Score: 252
Period size: 27 Copynumber: 8.9 Consensus size: 27
120488815 ATTACCAAAG
* *
120488825 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
120488852 TACCC-CTAATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
*
120488879 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* * *
120488906 TATCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
120488933 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
120488960 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
120488987 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
120489014 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
120489041 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
120489064 AAAATACCCT
Statistics
Matches: 188, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 186 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:120489071 original size:27 final size:27
Alignment explanation
Indices: 120489041--120489207 Score: 83
Period size: 27 Copynumber: 6.1 Consensus size: 27
120489031 ATTACTGTTT
120489041 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * *** *
120489068 TACCCTTGGTTTGTGAAATTACCGAAAA
1 TACCCTCGATTTACAAAATTA-CTAAAA
* ** *
120489096 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
120489122 TACCC-CTAATTTACAAAGTTA-TAGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
120489149 TACCCTTGACTTT-CTAAAAATTA-TAGAA
1 TACCCTCGA-TTTAC--AAAATTACTAAAA
* * * *
120489177 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
120489204 TACC
1 TACC
120489208 TTTGGTTTGT
Statistics
Matches: 107, Mismatches: 23, Indels: 20
0.71 0.15 0.13
Matches are distributed among these distances:
26 14 0.13
27 67 0.63
28 18 0.17
29 8 0.07
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:120490512 original size:25 final size:25
Alignment explanation
Indices: 120490483--120490530 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
120490473 TTATAATATG
* * *
120490483 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
120490508 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
120490531 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:120490599 original size:20 final size:20
Alignment explanation
Indices: 120490574--120490632 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
120490564 TAAATATGGT
120490574 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
120490594 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
120490614 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
120490633 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:120490710 original size:24 final size:24
Alignment explanation
Indices: 120490683--120490825 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
120490673 GAGGAAGTGA
120490683 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
120490707 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
120490731 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
120490754 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
120490778 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
120490802 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
120490826 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:120490776 original size:47 final size:47
Alignment explanation
Indices: 120490683--120490825 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
120490673 GAGGAAGTGA
120490683 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
120490731 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
120490778 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
120490826 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:120490799 original size:71 final size:72
Alignment explanation
Indices: 120490683--120490826 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
120490673 GAGGAAGTGA
*
120490683 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
120490746 CCAGTTAT
65 CCAGTTAT
** * *
120490754 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
120490819 CAGTTAT
66 CAGTTAT
120490826 A
1 A
120490827 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:120491055 original size:31 final size:31
Alignment explanation
Indices: 120491013--120491093 Score: 146
Period size: 31 Copynumber: 2.6 Consensus size: 31
120491003 ATACCGTTTA
120491013 CAGTAA-ATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
120491043 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
120491074 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
120491094 TATGAAAAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 6 0.12
31 43 0.88
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:120493881 original size:27 final size:27
Alignment explanation
Indices: 120493805--120493911 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
120493795 TTTAGTTTAC
*
120493805 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACCGAAATACCCTCGA-TTTG
* *
120493832 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* * *
120493859 TAAATTTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCCTCGATTTG
120493886 TAAAATTACC-AAAGTACCCTCGATTT
1 TAAAATTACCGAAA-TACCCTCGATTT
120493912 ACAAATTACC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.04
27 63 0.94
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:120493965 original size:52 final size:53
Alignment explanation
Indices: 120493900--120494132 Score: 258
Period size: 52 Copynumber: 4.4 Consensus size: 53
120493890 ATTACCAAAG
* *
120493900 TACCCTCGATTTACAAATTACCGTTTTACCCCTAATTTACATAATTAC-GTTT
1 TACCCTCGATTTACAAATTACCGTTTTACCCCTGATTTACAGAATTACTGTTT
* * * *
120493952 TACCC-CTGATTTACATAATTATCGTTTTACCTC-GACTTACAGAATTACCGTTT
1 TACCCTC-GATTTACA-AATTACCGTTTTACCCCTGATTTACAGAATTACTGTTT
* * * * *
120494005 TACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTAC-AAATTACCGTTTTACCCCTGATTTACAGAATTACTGTTT
* * * * *
120494059 TACCCTTGATTTA-GAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAATTACCGTTTTACCCCTGATTTACAGAATTACTGTTT
120494111 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTAC-AAATTAC
120494133 TAAAATACCC
Statistics
Matches: 155, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
51 1 0.01
52 75 0.48
53 44 0.28
54 35 0.23
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.42
Consensus pattern (53 bp):
TACCCTCGATTTACAAATTACCGTTTTACCCCTGATTTACAGAATTACTGTTT
Found at i:120494000 original size:79 final size:80
Alignment explanation
Indices: 120493900--120494134 Score: 252
Period size: 79 Copynumber: 3.0 Consensus size: 80
120493890 ATTACCAAAG
*
120493900 TACCCTCGATTTACA-AATTACCGTTTTACCCCTAATTTACATAATTAC-GTTTTACCCCTGATT
1 TACCCTCGA-TTACAGAATTACCGTTTTACCCCTGATTTACATAATTACTGTTTTACCCCTGATT
* *
120493963 TACATAATTA-TCGTTT
65 TACAAAATTACT-ATTT
*
120493979 TA-CCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTAC-TGAATTACTGTTTTACCCTTGA
1 TACCCTCGA-TTACAGAATTACCGTTTTACCCCT-GATTTACAT-AATTACTGTTTTACCCCTGA
* *
120494041 TTTATAGAATTACTATTT
63 TTTACAAAATTACTATTT
* * * * * *
120494059 TACCCTTGATT-TAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTA-CCCTCGATT
1 TACCCTCGATTACAGAATTACCGTTTTACCCCTGATTTACATAATTACTGTTTTACCCCT-GATT
120494122 TACAAAATTACTA
65 TACAAAATTACTA
120494135 AAATACCCTT
Statistics
Matches: 132, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
78 19 0.14
79 75 0.57
80 32 0.24
81 6 0.05
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (80 bp):
TACCCTCGATTACAGAATTACCGTTTTACCCCTGATTTACATAATTACTGTTTTACCCCTGATTT
ACAAAATTACTATTT
Found at i:120494133 original size:27 final size:27
Alignment explanation
Indices: 120493900--120494133 Score: 259
Period size: 27 Copynumber: 8.9 Consensus size: 27
120493890 ATTACCAAAG
*
120493900 TACCCTCGATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
120493926 TACCC-CTAATTTACATAATTAC-GTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
120493952 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
120493979 TA-CCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
120494005 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
120494032 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
120494059 TACCCTTGATTT--AGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
120494084 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
120494111 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
120494134 AAAATACCCT
Statistics
Matches: 183, Mismatches: 16, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
25 25 0.14
26 56 0.31
27 102 0.56
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:120494141 original size:27 final size:27
Alignment explanation
Indices: 120494111--120494278 Score: 85
Period size: 27 Copynumber: 6.1 Consensus size: 27
120494101 ATTACTGTTT
120494111 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * *** *
120494138 TACCCTTGGTTTGTGAAATTACCGAAAA
1 TACCCTCGATTTACAAAATTA-CTAAAA
* ** *
120494166 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
120494192 TACCC-CTAATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
120494219 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
120494248 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
120494275 TACC
1 TACC
120494279 TTTGGTTTGT
Statistics
Matches: 110, Mismatches: 20, Indels: 22
0.72 0.13 0.14
Matches are distributed among these distances:
26 7 0.06
27 72 0.65
28 12 0.11
29 19 0.17
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:120494159 original size:106 final size:106
Alignment explanation
Indices: 120493949--120494145 Score: 245
Period size: 106 Copynumber: 1.8 Consensus size: 106
120493939 CATAATTACG
*
120493949 TTTTACCCCTGATTTACATAATTATCGTTTTACCTCGACTTACAGAATTACCGTTTTACCCTCGA
1 TTTTACCCCTGATTTA-AGAATTATCGTTTTACCTCGACTTACAGAATTACCGTTTTACCCTCGA
** ****
120494014 TTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTA
65 TTTACAAAATTACTAAAATACCCTTGATTTATAGAATTACTA
* * * * *
120494056 TTTTACCCTTGATTT-AGAATTA-CTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCG
1 TTTTACCCCTGATTTAAGAATTATC-GTTTTA-CCTCGACTTACAGAATTACCGTTTTACCCTCG
120494119 ATTTACAAAATTACTAAAATACCCTTG
64 ATTTACAAAATTACTAAAATACCCTTG
120494146 GTTTGTGAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
104 1 0.01
105 12 0.16
106 49 0.64
107 14 0.18
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.43
Consensus pattern (106 bp):
TTTTACCCCTGATTTAAGAATTATCGTTTTACCTCGACTTACAGAATTACCGTTTTACCCTCGAT
TTACAAAATTACTAAAATACCCTTGATTTATAGAATTACTA
Found at i:120494283 original size:27 final size:27
Alignment explanation
Indices: 120494235--120494286 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
120494225 TGACTTTCTA
120494235 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
120494262 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
120494287 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:120494404 original size:27 final size:27
Alignment explanation
Indices: 120494340--120494404 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
120494330 ACCCCTAAAA
*
120494340 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
120494367 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
120494394 GGTAAAATGAC
1 GGTAAAATGAC
120494405 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:120495588 original size:25 final size:25
Alignment explanation
Indices: 120495559--120495606 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
120495549 TTATAATATG
* * *
120495559 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
120495584 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
120495607 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:120495693 original size:20 final size:20
Alignment explanation
Indices: 120495648--120495706 Score: 102
Period size: 19 Copynumber: 3.0 Consensus size: 20
120495638 ATAAATATGG
120495648 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
120495668 -ATGTATGCTATGCACATGA
1 TATGTATGATATGCACATGA
120495687 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
120495707 GGTAATCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:120495801 original size:23 final size:24
Alignment explanation
Indices: 120495757--120495922 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
120495747 GAGGAAGTGA
120495757 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
120495781 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
120495804 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
120495828 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
120495851 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
120495875 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
120495899 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
120495923 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:120495826 original size:47 final size:47
Alignment explanation
Indices: 120495757--120495922 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
120495747 GAGGAAGTGA
120495757 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
120495803 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
120495851 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
120495899 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
120495923 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
47 80 0.72
48 20 0.18
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:120495873 original size:71 final size:70
Alignment explanation
Indices: 120495757--120495923 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 70
120495747 GAGGAAGTGA
120495757 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCA
120495822 GTTATC
65 GTTATC
** *
120495828 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCA
*
120495893 GTTATT
65 GTTATC
*
120495899 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
120495924 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
70 13 0.15
71 63 0.72
72 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATC
Found at i:120496154 original size:31 final size:31
Alignment explanation
Indices: 120496118--120496188 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
120496108 TACAGTAAAG
120496118 AATATGAAAAGGCTTCGGCCCAGTAATATGA
1 AATATGAAAAGGCTTCGGCCCAGTAATATGA
*
120496149 AATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAAAGGCTTCGGCCCAGTAATATGA
120496180 AATATGAAA
1 AATATGAAA
120496189 TATGAAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (31 bp):
AATATGAAAAGGCTTCGGCCCAGTAATATGA
Found at i:120500167 original size:40 final size:38
Alignment explanation
Indices: 120500117--120500224 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
120500107 ATCACGATTT
*
120500117 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
120500157 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
120500197 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
120500225 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:120510377 original size:43 final size:45
Alignment explanation
Indices: 120510245--120510413 Score: 218
Period size: 45 Copynumber: 3.8 Consensus size: 45
120510235 GGGCATTACA
* * *
120510245 ATACTATTCGGGCCTTTGAGGCTAGCAGGCTATAATGCCGGTGCG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
*
120510290 ATACTCTTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
* *
120510335 ATACTATTCGAG-CTTCGAGCCTAGCAGG-TGA-AATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATACCGGTGAG
* * * *
120510378 ACACTATTTGGGCTTTTTAGCCTAGCAGGCTATAAT
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAAT
120510414 GCCAATGAAA
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
43 22 0.21
44 30 0.28
45 55 0.51
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
Found at i:120510404 original size:88 final size:90
Alignment explanation
Indices: 120510245--120510413 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 90
120510235 GGGCATTACA
* * * * * * *
120510245 ATACTATTCGGGCCTTTGAGGCTAGCAGGCTATAATGCCGGTGCGATACTCTTCGGGCCTTTGAG
1 ATACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGACACTATTCGGGCCTTTGAG
120510310 CCTAGCAGGCTATAATACCGGTGAG
66 CCTAGCAGGCTATAATACCGGTGAG
* * *
120510335 ATACTATTCGAG-CTTCGAGCCTAGCAGG-TGA-AATACCGGTGAGACACTATTTGGGCTTTTTA
1 ATACTATTCGAGCCTTCGAGCCTAGCAGGCT-ATAATACCGGTGAGACACTATTCGGGCCTTTGA
120510397 GCCTAGCAGGCTATAAT
65 GCCTAGCAGGCTATAAT
120510414 GCCAATGAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
88 42 0.62
89 15 0.22
90 11 0.16
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (90 bp):
ATACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGACACTATTCGGGCCTTTGAG
CCTAGCAGGCTATAATACCGGTGAG
Found at i:120517131 original size:45 final size:46
Alignment explanation
Indices: 120517073--120517198 Score: 168
Period size: 45 Copynumber: 2.8 Consensus size: 46
120517063 ATCATTTCAT
** *
120517073 CGGCATTATAGCCTGCTAGGCTTGAAA-GCCTGAATAGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCCAAAGGCCCGAATAGTATCTCAC
* * *
120517118 CGGTATTATAGCCTGCTAGGC-CCAAAGGCCCGAATAGTGTTTCAC
1 CGGCATTATAGCCTGCTAGGCTCCAAAGGCCCGAATAGTATCTCAC
*
120517163 CGGCATAATAGCCTGCTAGGCT-CAAAGGCCCGAATA
1 CGGCATTATAGCCTGCTAGGCTCCAAAGGCCCGAATA
120517199 TAATACCAAC
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
44 3 0.04
45 68 0.96
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (46 bp):
CGGCATTATAGCCTGCTAGGCTCCAAAGGCCCGAATAGTATCTCAC
Found at i:120517386 original size:38 final size:38
Alignment explanation
Indices: 120517191--120517388 Score: 236
Period size: 38 Copynumber: 5.2 Consensus size: 38
120517181 GGCTCAAAGG
* * * * *
120517191 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * *
120517229 CCCAGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
120517267 CCCAGATATATTACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
120517305 CCCGGATATATTACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* * * *
120517343 CCCGGATATAATT-CCAGCATGTAGCATGCGGGCTTTAA
1 CCCGGATAT-ATTACCAGCACGAAGCCTGCGGGATTTAA
*
120517381 GCCGGATA
1 CCCGGATA
120517389 CAAATATCAA
Statistics
Matches: 143, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
38 140 0.98
39 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:120520876 original size:46 final size:46
Alignment explanation
Indices: 120520645--120520872 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
120520635 AGTTAAATAT
120520645 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
120520691 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
120520737 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
120520783 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
120520829 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
120520873 AGATGTATAT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:120520930 original size:47 final size:47
Alignment explanation
Indices: 120520876--120520986 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
120520866 ATGTATGAGA
* * *
120520876 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
120520923 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
120520970 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
120520987 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:120523600 original size:40 final size:40
Alignment explanation
Indices: 120523545--120523808 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
120523535 CTCGACGATG
*
120523545 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
*
120523585 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
120523625 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
120523665 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
120523705 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
120523745 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
120523785 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
120523809 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:120524536 original size:40 final size:40
Alignment explanation
Indices: 120524472--120524572 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
120524462 AATGGTATCT
* ** * *
120524472 GGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTACTA-AATCC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA-CC
*
120524512 GGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAACC
1 GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
*
120524552 GGGCT-ATGTCCCGAAGACAAT
1 GGGCTAAT-TCCCGAAGGCAAT
120524573 CGAGTGAGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.04
40 48 0.92
41 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
GGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC
Found at i:120524588 original size:40 final size:40
Alignment explanation
Indices: 120524510--120524606 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 40
120524500 GTTACTAAAT
* * *
120524510 CCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
* * *
120524550 CCGGGCT-ATGTCCCGAAGACAATCGAGTGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGTGAATCACTATAA
* *
120524590 CC-GGTTAAATCCCGAAG
1 CCGGGCTAATTCCCGAAG
120524607 GTACGTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGTGAATCACTATAA
Found at i:120527505 original size:46 final size:46
Alignment explanation
Indices: 120527274--120527501 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
120527264 AGTTAAATAT
120527274 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
120527320 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
120527366 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
120527412 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
120527458 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
120527502 AGATGTATAT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:120527559 original size:47 final size:47
Alignment explanation
Indices: 120527505--120527615 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
120527495 ATGTATGAGA
* * *
120527505 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
120527552 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
120527599 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
120527616 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:120530076 original size:2 final size:2
Alignment explanation
Indices: 120530064--120530104 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
120530054 CACTTTCAAA
120530064 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120530105 TCGAATTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:120533377 original size:29 final size:29
Alignment explanation
Indices: 120533338--120533412 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
120533328 GGTTGAGAGA
* *
120533338 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
120533367 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
120533396 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
120533413 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:120541271 original size:29 final size:29
Alignment explanation
Indices: 120541232--120541306 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
120541222 GGTTGAGAGA
* *
120541232 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
120541261 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
120541290 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
120541307 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:120544986 original size:45 final size:46
Alignment explanation
Indices: 120544885--120545057 Score: 189
Period size: 45 Copynumber: 3.9 Consensus size: 46
120544875 TTTTCTCAAA
* * * *
120544885 TCACCGGCATT-TCGCCTGCTAGGATCG--AGGTCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGT-ATT
* *
120544928 TCATCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATT
* * *
120544973 TCACCGGCATTATAGCCTGCTACGC-CGAAAGGCCCGAATTGTGTT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATT
* *
120545018 TCACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCTGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATA
120545058 TAATACCTGC
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
43 10 0.09
44 19 0.17
45 77 0.71
46 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (46 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATT
Found at i:120545209 original size:38 final size:38
Alignment explanation
Indices: 120545055--120545188 Score: 205
Period size: 38 Copynumber: 3.5 Consensus size: 38
120545045 AAAGGCCTGA
* * * *
120545055 ATATAATACCTGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
120545093 ATATAATACCAGCACGAAGCCTGCGGGAATTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
120545131 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
120545169 ATATATTACCAGCACGAAGC
1 ATATATTACCAGCACGAAGC
120545189 ATGCAGTCTT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 89 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.21
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:120545603 original size:43 final size:44
Alignment explanation
Indices: 120545478--120545612 Score: 168
Period size: 45 Copynumber: 3.1 Consensus size: 44
120545468 ACATAACATT
*
120545478 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCT-GAAT-A
* * *
120545524 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCTG-ATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGAATA
* *
120545566 TCATTTCACCGGCATTATAGCCTGCTAGGGC-CGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTA-GGCTCAAAGCCTGAATA
120545610 TCA
1 TCA
120545613 CATTTCGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
42 2 0.03
43 32 0.42
44 9 0.12
45 33 0.43
46 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGAATA
Found at i:120547398 original size:43 final size:43
Alignment explanation
Indices: 120547337--120547433 Score: 178
Period size: 43 Copynumber: 2.3 Consensus size: 43
120547327 GTTCTCGTTT
120547337 ATTTCAT-TTGAATCTAGACTCATTAAGGAGTCTAATCATATAA
1 ATTTCATCTT-AATCTAGACTCATTAAGGAGTCTAATCATATAA
120547380 ATTTCATCTTAATCTAGACTCATTAAGGAGTCTAATCATATAA
1 ATTTCATCTTAATCTAGACTCATTAAGGAGTCTAATCATATAA
120547423 ATTTCATCTTA
1 ATTTCATCTTA
120547434 TGACCATTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 51 0.96
44 2 0.04
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (43 bp):
ATTTCATCTTAATCTAGACTCATTAAGGAGTCTAATCATATAA
Found at i:120550485 original size:45 final size:45
Alignment explanation
Indices: 120550410--120550531 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 45
120550400 TAGGAACGGA
* * *
120550410 ATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGT
1 ATTATAGCCTGCTAGGC-CCAAAGGCTCGAATAGTATCTCACCGGC
* *
120550455 ATTATAGCCTGCTAGGCCCAAAGGCTCGAATAGTGTTTCACCGGC
1 ATTATAGCCTGCTAGGCCCAAAGGCTCGAATAGTATCTCACCGGC
* * *
120550500 ATAATAGCCTACTAGGCTCAAAGGCTCGAATA
1 ATTATAGCCTGCTAGGCCCAAAGGCTCGAATA
120550532 TAATACCAGC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 4 0.06
45 64 0.94
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGCCCAAAGGCTCGAATAGTATCTCACCGGC
Found at i:120550572 original size:38 final size:38
Alignment explanation
Indices: 120550529--120550664 Score: 177
Period size: 38 Copynumber: 3.6 Consensus size: 38
120550519 AAAGGCTCGA
*
120550529 ATATAATACCAGCACTAGGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTACGGGATTTAACCCGG
* *
120550567 ATATAATACCAACA-TGAAGCCTACGGGATTTAACCTGG
1 ATATAATACCAGCACT-AAGCCTACGGGATTTAACCCGG
* * *
120550605 ATATATTACCAGCACGAAGCCTACGGGATTTAACACGG
1 ATATAATACCAGCACTAAGCCTACGGGATTTAACCCGG
*
120550643 ATATAATTCCAGCA-TATAGCCT
1 ATATAATACCAGCACTA-AGCCT
120550665 GCGGTCATTA
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.02
38 82 0.98
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTACGGGATTTAACCCGG
Found at i:120551077 original size:42 final size:44
Alignment explanation
Indices: 120550953--120551086 Score: 168
Period size: 45 Copynumber: 3.1 Consensus size: 44
120550943 ACATAACATT
*
120550953 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAAT-A
* *
120550999 T-ATTTCACCGGCATCATAGCCTACTCA-GCTCAAAGCCCG-ATA
1 TCATTTCACCGGCATTATAGCCTGCT-AGGCTCAAAGCCCGAATA
* *
120551041 TCATTTC-CCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
120551084 TCA
1 TCA
120551087 CATTTCGATA
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 28 0.36
43 13 0.17
44 4 0.05
45 29 0.38
46 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.25
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
Found at i:120552451 original size:2 final size:2
Alignment explanation
Indices: 120552444--120552471 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
120552434 CACTTTCAAA
120552444 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120552472 TCGAATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120553035 original size:39 final size:39
Alignment explanation
Indices: 120552992--120553070 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
120552982 ATCATGTTAC
120552992 TGCTGCTGTCCCAAGCAGATTTATTACCAATTCACTCTT
1 TGCTGCTGTCCCAAGCAGATTTATTACCAATTCACTCTT
120553031 TGCTGCTGTCCCAAGCAGATTTATTACCAATTCACTCTT
1 TGCTGCTGTCCCAAGCAGATTTATTACCAATTCACTCTT
120553070 T
1 T
120553071 CACACATAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (39 bp):
TGCTGCTGTCCCAAGCAGATTTATTACCAATTCACTCTT
Found at i:120566079 original size:43 final size:45
Alignment explanation
Indices: 120565942--120566153 Score: 251
Period size: 43 Copynumber: 4.9 Consensus size: 45
120565932 ATATCACACA
120565942 ATACTATTC-GGCCTTTGAG-CTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
120565985 ATACTATTCGGGCCTTTAAACCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * * *
120566030 ATACTATTCAGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
** * * *
120566073 ATACTATTCGGGTTTTTGAGCCTAGCAGGCTATAATGCTGGTAAA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
120566118 ATGA-TA-TCGGG-CTTTGAGCCTAGCAGGCGA-AATGCC
1 AT-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
120566154 AATGAATGAA
Statistics
Matches: 145, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
42 5 0.03
43 48 0.33
44 44 0.30
45 47 0.32
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:120566097 original size:88 final size:87
Alignment explanation
Indices: 120565941--120566154 Score: 272
Period size: 88 Copynumber: 2.4 Consensus size: 87
120565931 AATATCACAC
* *
120565941 AATACTATTCGGCCTTTGAG-CTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTAAA
1 AATACTATTCGG-CTTTGAGCCTAGCAGGCGA-AATGCCAGTGAGATACTATTCGGGCCTTTAAA
*
120566005 CCTAGCAGGCTATAATGCCGGTGA
64 CCTAGCAGGCTATAATGCCGGTAA
* * ** * *
120566029 GATACTATTCAGGCTTCGAGCCTAGCAGGCGAAATGCCAGTGAGATACTATTCGGGTTTTTGAGC
1 AATACTATTC-GGCTTTGAGCCTAGCAGGCGAAATGCCAGTGAGATACTATTCGGGCCTTTAAAC
*
120566094 CTAGCAGGCTATAATGCTGGTAA
65 CTAGCAGGCTATAATGCCGGTAA
120566117 AATGA-TA-TCGGGCTTTGAGCCTAGCAGGCGAAATGCCA
1 AAT-ACTATTC-GGCTTTGAGCCTAGCAGGCGAAATGCCA
120566155 ATGAATGAAT
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
87 29 0.26
88 68 0.62
89 13 0.12
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (87 bp):
AATACTATTCGGCTTTGAGCCTAGCAGGCGAAATGCCAGTGAGATACTATTCGGGCCTTTAAACC
TAGCAGGCTATAATGCCGGTAA
Found at i:120571104 original size:45 final size:46
Alignment explanation
Indices: 120571040--120571146 Score: 207
Period size: 45 Copynumber: 2.3 Consensus size: 46
120571030 TAGCCAAGCT
120571040 ACTCAACGAGTTCGGACATTCGCATCCATAAGT-AACTCGGACTCA
1 ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
120571085 ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
1 ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
120571131 ACTCAACGAGTTCGGA
1 ACTCAACGAGTTCGGA
120571147 TGCCCAAATA
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 33 0.54
46 28 0.46
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCA
Found at i:120573566 original size:30 final size:30
Alignment explanation
Indices: 120573521--120573609 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
120573511 CAAAGATAAC
*
120573521 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
120573550 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
120573580 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
120573610 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:120573569 original size:15 final size:14
Alignment explanation
Indices: 120573521--120573603 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
120573511 CAAAGATAAC
*
120573521 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
120573535 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
120573550 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
120573565 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
120573580 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
120573595 AAGAAACCC
1 AAGAAACCC
120573604 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:120573609 original size:15 final size:15
Alignment explanation
Indices: 120573532--120573609 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
120573522 AGAAAACCGA
120573532 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
120573547 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
120573561 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
120573576 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
120573592 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
120573607 ATA
1 ATA
120573610 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:120576593 original size:46 final size:45
Alignment explanation
Indices: 120576534--120576700 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
120576524 GCCCATAAGC
*
120576534 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATA-GT
* * *
120576580 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-GTAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCAT-AGT
* * *
120576627 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAT-AGT
*
120576673 GAACTCGAACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
120576701 ATGCCCAAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 53 0.54
47 27 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAGT
Found at i:120576692 original size:93 final size:93
Alignment explanation
Indices: 120576533--120576705 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
120576523 CGCCCATAAG
* * * * *
120576533 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
120576598 ACGAGTTCGGATGCCTAGTTGTATTTCA
66 ACGAGTTCGGATGCCTAGTTGTATTTCA
*
120576626 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
120576691 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
120576706 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTGTATTTCA
Found at i:120578037 original size:27 final size:27
Alignment explanation
Indices: 120577981--120578101 Score: 163
Period size: 27 Copynumber: 4.5 Consensus size: 27
120577971 AAATCAAGAT
* * *
120577981 ATTACAGAAATA-CCACAGTTTGTAAA
1 ATTACCGAAATACCCCCAATTTGTAAA
120578007 ATTACCGAAATACCCCCAATTTGTAAA
1 ATTACCGAAATACCCCCAATTTGTAAA
* *
120578034 ATTACTGAAATACCCCCAGTTTGTAAA
1 ATTACCGAAATACCCCCAATTTGTAAA
**
120578061 ATTACTAAAATACCCCCAATTTGTAAA
1 ATTACCGAAATACCCCCAATTTGTAAA
*
120578088 AGTACCGAAATACC
1 ATTACCGAAATACC
120578102 TTTATAGTGT
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 11 0.13
27 73 0.87
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.26
Consensus pattern (27 bp):
ATTACCGAAATACCCCCAATTTGTAAA
Found at i:120578057 original size:54 final size:54
Alignment explanation
Indices: 120577981--120578101 Score: 181
Period size: 54 Copynumber: 2.3 Consensus size: 54
120577971 AAATCAAGAT
*
120577981 ATTACAGAAATA-CCACAGTTTGTAAAATTACCGAAATACCCCCAATTTGTAAA
1 ATTACAGAAATACCCACAGTTTGTAAAATTACCAAAATACCCCCAATTTGTAAA
* * *
120578034 ATTACTGAAATACCCCCAGTTTGTAAAATTACTAAAATACCCCCAATTTGTAAA
1 ATTACAGAAATACCCACAGTTTGTAAAATTACCAAAATACCCCCAATTTGTAAA
* *
120578088 AGTACCGAAATACC
1 ATTACAGAAATACC
120578102 TTTATAGTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 11 0.18
54 50 0.82
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.26
Consensus pattern (54 bp):
ATTACAGAAATACCCACAGTTTGTAAAATTACCAAAATACCCCCAATTTGTAAA
Found at i:120578125 original size:54 final size:53
Alignment explanation
Indices: 120577987--120578130 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 53
120577977 AGATATTACA
* * * * *
120577987 GAAATA-CCACAGTTTGTAAAATTACCGAAATACCCCCAATTTGTAAAATTACT
1 GAAATACCCCCAGTGTGTAAAATTA-CAAAATACCCCCAATTTGTAAAAGTACC
*
120578040 GAAATACCCCCAGTTTGTAAAATTACTAAAATACCCCCAATTTGTAAAAGTACC
1 GAAATACCCCCAGTGTGTAAAATTAC-AAAATACCCCCAATTTGTAAAAGTACC
***
120578094 GAAATACCTTTA-TAGTGTAAAATTATCAAAATACCCC
1 GAAATACCCCCAGT-GTGTAAAATTA-CAAAATACCCC
120578131 TGTAGGGTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.10
54 70 0.89
55 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (53 bp):
GAAATACCCCCAGTGTGTAAAATTACAAAATACCCCCAATTTGTAAAAGTACC
Found at i:120580647 original size:30 final size:28
Alignment explanation
Indices: 120580594--120580649 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
120580584 CATGTAAACC
**
120580594 TAACATCAAACTTTCATAATTCATCATT
1 TAACATCAAACACTCATAATTCATCATT
120580622 TAACATCACAACACTCATGAATTCATCA
1 TAACATCA-AACACTCAT-AATTCATCA
120580650 ATGGCATCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 7 0.29
30 9 0.38
ACGTcount: A:0.41, C:0.25, G:0.02, T:0.32
Consensus pattern (28 bp):
TAACATCAAACACTCATAATTCATCATT
Found at i:120583326 original size:28 final size:29
Alignment explanation
Indices: 120583294--120583363 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
120583284 CATACATGCT
*
120583294 TATGGCCCACTAGGCCC-AATCTCAT-TCA
1 TATGGCCCACTAGGCCCAAATCACATCT-A
* *
120583322 TATGGCCTATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCCAAATCACATCTA
120583351 TATGGCCCACTAG
1 TATGGCCCACTAG
120583364 AACCAATCAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 15 0.43
29 19 0.54
30 1 0.03
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAAATCACATCTA
Found at i:120583380 original size:28 final size:28
Alignment explanation
Indices: 120583294--120583380 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 28
120583284 CATACATGCT
* *
120583294 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTTA
* * *
120583322 TATGGCCTATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATTTA
** *
120583351 TATGGCCCACTAGAACCAATCACTTTTA
1 TATGGCCCACTAGGCCCAATCACATTTA
120583379 TA
1 TA
120583381 GTCATGCTCA
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
28 26 0.55
29 21 0.45
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTTA
Found at i:120583614 original size:16 final size:16
Alignment explanation
Indices: 120583593--120583659 Score: 116
Period size: 16 Copynumber: 4.2 Consensus size: 16
120583583 GTAGCCAAAC
120583593 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
120583609 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
120583625 TTTTAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
120583641 TTTCAGCTTTTCGGGA
1 TTTCAGCTTTTCGGCA
120583657 TTT
1 TTT
120583660 GCCGATCTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.12, C:0.21, G:0.19, T:0.48
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:120588223 original size:22 final size:22
Alignment explanation
Indices: 120588198--120588273 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
120588188 AGATATGTAT
120588198 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
120588220 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
120588244 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
120588267 ATGTGAT
1 ATGTGAT
120588274 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:120588248 original size:25 final size:25
Alignment explanation
Indices: 120588220--120588298 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
120588210 CGAATGGCCA
120588220 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
120588245 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
*
120588267 ATGTGATGAATGTGAAAGTATATAT
1 ATGTGATGAATGTGAAAGTGTATAT
120588292 ATGTGAT
1 ATGTGAT
120588299 AGGGCCAAGT
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 7 0.18
25 15 0.39
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:120588248 original size:47 final size:47
Alignment explanation
Indices: 120588195--120588489 Score: 484
Period size: 47 Copynumber: 6.3 Consensus size: 47
120588185 ACAAGATATG
120588195 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120588242 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
120588289 TATATGTGATAGGGCC-AAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAA-TGGCCAATGTGATGAATGTGAAAGTGTA
* *
120588336 GATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
120588383 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120588430 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120588477 TAAATGTGATAAG
1 TATATGTGATAAG
120588490 TCCCGAAGGG
Statistics
Matches: 228, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 2 0.01
47 224 0.98
48 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:120591307 original size:120 final size:119
Alignment explanation
Indices: 120591047--120591415 Score: 587
Period size: 120 Copynumber: 3.1 Consensus size: 119
120591037 CTCGACAATG
* *
120591047 ATCCGGGTTAAGTTCCGAAGAGCATACGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCAT
120591112 T-GTGCTAGTGATATATCCGGGCTAAGCCCGAAGAGCATTCGTGCTGGTGATGT
66 TCGTGCTAGTGATATATCCGGGCTAAGCCCGAAGAGCATTCGTGCTGGTGATGT
120591165 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCAT
120591230 TCGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTGGTGATGT
66 TCGTGCTAGTGATATATCCGGGCTAAG-CCCGAAGAGCATTCGTGCTGGTGATGT
* ** *
120591285 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCAT
* * * * *
120591350 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGACGTGT
66 TCGTGCTAGTGATATATCCGGGCTAAG-CCCGAAGAGCATTCGTGCTGGTGA--TGT
*
120591407 ATTCGGGCT
1 ATCCGGGCT
120591416 TTCGTGCCTA
Statistics
Matches: 234, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
118 64 0.27
119 25 0.11
120 134 0.57
122 11 0.05
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (119 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGCCCCGAAGAGCAT
TCGTGCTAGTGATATATCCGGGCTAAGCCCGAAGAGCATTCGTGCTGGTGATGT
Found at i:120591400 original size:40 final size:40
Alignment explanation
Indices: 120591047--120591388 Score: 508
Period size: 40 Copynumber: 8.6 Consensus size: 40
120591037 CTCGACAATG
* * *
120591047 ATCCGGGTTAAGTTCCGAAGAGCATACGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
120591087 ATCCGGGCTAAGCCCCGAAGAGCATT-GTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
120591126 ATCCGGGCTAAG-CCCGAAGAGCATTCGTGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
120591165 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
120591205 ATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * *
120591245 ATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
120591285 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * * *
120591325 ATCCGGGCTAAGTTCCGAAAAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
120591365 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
120591389 ATCATGCTGG
Statistics
Matches: 277, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
38 13 0.05
39 48 0.17
40 216 0.78
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:120594774 original size:22 final size:22
Alignment explanation
Indices: 120594749--120594824 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
120594739 AGATATGTAT
120594749 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
120594771 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
120594795 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
120594818 ATGTGAT
1 ATGTGAT
120594825 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:120594799 original size:25 final size:25
Alignment explanation
Indices: 120594771--120594849 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
120594761 CGAATGGCCA
120594771 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
120594796 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
*
120594818 ATGTGATGAATGTGAAAGTATATAT
1 ATGTGATGAATGTGAAAGTGTATAT
120594843 ATGTGAT
1 ATGTGAT
120594850 AGGGCCGAGT
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 7 0.18
25 15 0.39
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:120594799 original size:47 final size:47
Alignment explanation
Indices: 120594746--120595040 Score: 500
Period size: 47 Copynumber: 6.3 Consensus size: 47
120594736 ACAAGATATG
120594746 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120594793 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
120594840 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120594887 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
120594934 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120594981 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
120595028 TAAATGTGATAAG
1 TATATGTGATAAG
120595041 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:120594895 original size:25 final size:25
Alignment explanation
Indices: 120594867--120594943 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
120594857 AGTGGCCAAC
120594867 GTGATGAATGTGAAAGTGTATATAT
1 GTGATGAATGTGAAAGTGTATATAT
* * ***
120594892 GTGAT-AAGGCCG-AA-TGGCCA-AT
1 GTGATGAATG-TGAAAGTGTATATAT
*
120594914 GTGATGAATGTGAAAGTATATATAT
1 GTGATGAATGTGAAAGTGTATATAT
120594939 GTGAT
1 GTGAT
120594944 AGGGCCGAGC
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
22 8 0.22
23 8 0.22
24 7 0.19
25 13 0.36
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATAT
Found at i:120597740 original size:27 final size:27
Alignment explanation
Indices: 120597684--120597844 Score: 146
Period size: 27 Copynumber: 6.0 Consensus size: 27
120597674 TAAGACCCCA
* * **
120597684 GTTTGTAAAATTA-TCAAATACCCCCA
1 GTTTGTAAAATTACTAAAATACCTCTG
120597710 GTTTGTAAAATTACTAAAATACCTCTG
1 GTTTGTAAAATTACTAAAATACCTCTG
* *
120597737 GTTTGTAAAATTACTGAAATACCTTTG
1 GTTTGTAAAATTACTAAAATACCTCTG
* ** * * **
120597764 GCTTGTAAAATTACCGAAATGCCCCCA
1 GTTTGTAAAATTACTAAAATACCTCTG
* * *
120597791 ATTTGTAAAATTACCAAAATACC-CTT
1 GTTTGTAAAATTACTAAAATACCTCTG
*
120597817 GTAGTGTAAAATTACTAAAATACCTCTG
1 GT-TTGTAAAATTACTAAAATACCTCTG
120597845 TAAGCTAAAA
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 15 0.14
27 92 0.84
28 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
GTTTGTAAAATTACTAAAATACCTCTG
Found at i:120597825 original size:81 final size:80
Alignment explanation
Indices: 120597686--120597841 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 80
120597676 AGACCCCAGT
* * * *
120597686 TTGTAAAATTATCAAATACCCCCAGTTTGTAAAATTACTAAAATACCTCTGGTTTGTAAAATTAC
1 TTGTAAAATTACCAAATACCCCCAATTTGTAAAATTACCAAAATACCTCTGGTGTGTAAAATTAC
*
120597751 TGAAATACCTTTGGC
66 TAAAATACCTTTGGC
* *
120597766 TTGTAAAATTACCGAAATGCCCCCAATTTGTAAAATTACCAAAATACC-CTTGTAGTGTAAAATT
1 TTGTAAAATTACC-AAATACCCCCAATTTGTAAAATTACCAAAATACCTCTGGT-GTGTAAAATT
120597830 ACTAAAATACCT
64 ACTAAAATACCT
120597842 CTGTAAGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
80 16 0.24
81 51 0.76
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
TTGTAAAATTACCAAATACCCCCAATTTGTAAAATTACCAAAATACCTCTGGTGTGTAAAATTAC
TAAAATACCTTTGGC
Found at i:120600206 original size:21 final size:21
Alignment explanation
Indices: 120600181--120600227 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
120600171 AATTAGGGAT
*
120600181 TTAATTGTGAAATGTGTAAAA
1 TTAATGGTGAAATGTGTAAAA
*
120600202 TTAATGGTGAAATGTGTGAAA
1 TTAATGGTGAAATGTGTAAAA
120600223 -TAATG
1 TTAATG
120600228 AAAATTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.36
Consensus pattern (21 bp):
TTAATGGTGAAATGTGTAAAA
Found at i:120603999 original size:41 final size:39
Alignment explanation
Indices: 120603949--120604094 Score: 152
Period size: 41 Copynumber: 3.6 Consensus size: 39
120603939 GCTACTCGTT
120603949 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCAA
1 CAAATGCCTTC-GGACATAGCCCGGTTATAGTAACTCGC-A
* *
120603990 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
* * * * *
120604030 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CATAGCCCGGTTATAGTAAC-TCGCA
120604071 CAAA-GCCTTCGAGACATAGCCCGG
1 CAAATGCCTTCG-GACATAGCCCGG
120604095 ACATCATTCG
Statistics
Matches: 90, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
39 4 0.04
40 41 0.46
41 43 0.48
42 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
Found at i:120604055 original size:40 final size:40
Alignment explanation
Indices: 120603949--120604095 Score: 149
Period size: 40 Copynumber: 3.6 Consensus size: 40
120603939 GCTACTCGTT
*
120603949 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCAA
1 CAAATGCCTTCAGGACTTAGCCCGGATT-TAGTAACTCGC-A
* *
120603990 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
120604030 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCAGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
120604071 CAAA-GCCTTC-GAGACATAGCCCGGA
1 CAAATGCCTTCAG-GACTTAGCCCGGA
120604096 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.03
40 44 0.48
41 43 0.47
42 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:120610079 original size:28 final size:28
Alignment explanation
Indices: 120610047--120610116 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
120610037 AATGAGATTG
*
120610047 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
120610075 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
120610103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
120610117 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:120616019 original size:23 final size:23
Alignment explanation
Indices: 120615989--120616033 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
120615979 AACAAAAGAC
120615989 ATTGAGTATCAGGTGGGAGATAG
1 ATTGAGTATCAGGTGGGAGATAG
120616012 ATTGAGTATCAGGTGGGAGATA
1 ATTGAGTATCAGGTGGGAGATA
120616034 AAGTGTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.04, G:0.38, T:0.27
Consensus pattern (23 bp):
ATTGAGTATCAGGTGGGAGATAG
Found at i:120617996 original size:28 final size:28
Alignment explanation
Indices: 120617964--120618033 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
120617954 AATGAGATTG
*
120617964 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
120617992 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
120618020 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
120618034 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:120622045 original size:40 final size:40
Alignment explanation
Indices: 120621973--120622233 Score: 254
Period size: 40 Copynumber: 6.7 Consensus size: 40
120621963 CGGATATAAC
* * * * *
120621973 CACTCGCAC-AAGGCCGTCAGGTCTTAGCCCGG-ATATGGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* * * *
120622012 CACTAGCACAAACGTCTTCGGGTCTTAGCCCGG-ATATAG-
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
120622051 CAACT--CAC-AATGCCTTCGGGACTTAGCCCGGAATTAGT
1 C-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
120622089 AACTCGCACCAATGCCTTCGGGACTTGGCCCGGAATTAGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
*
120622129 -ATCTCGCACAATTGCCTTCGGGACTTAGCCCGG-ATGTAGT
1 CA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* *
120622169 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAAT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
120622209 CACTAGCACAAATGTCTTC-GGACTT
1 CACTCGCACAAATGCCTTCGGGACTT
120622234 GACCCCATTA
Statistics
Matches: 192, Mismatches: 19, Indels: 22
0.82 0.08 0.09
Matches are distributed among these distances:
37 26 0.14
38 5 0.03
39 21 0.11
40 137 0.71
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
Found at i:120630294 original size:40 final size:40
Alignment explanation
Indices: 120630148--120630434 Score: 300
Period size: 40 Copynumber: 7.3 Consensus size: 40
120630138 ACCCAAGTAT
* *** *
120630148 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * * *
120630186 CGTCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
120630226 CTTC-GGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
120630265 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
* * *
120630305 CTTCGGGACTTGGCCCGGA-ATTAGTATCTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
*
120630345 CTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
120630385 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGC-CAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
120630424 CTTCGGGACTT
1 CTTCGGGACTT
120630435 GACCCGTTAG
Statistics
Matches: 212, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
38 10 0.05
39 68 0.32
40 134 0.63
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:120630381 original size:120 final size:118
Alignment explanation
Indices: 120630216--120630440 Score: 333
Period size: 120 Copynumber: 1.9 Consensus size: 118
120630206 ATGGTCACTA
* *
120630216 GCACAAATGTCTTCGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * * *
120630281 GGAATTAGTAACTCGCACCAATGCCTTCGGGACTTGGCCCGGAATTAGTATCTC
66 GGAATTAATAACTAGC-CAAATGCCTTCGGGACTTGACCCGGAATTAGTATCTC
* * *
120630335 GCACAATTGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTC-GGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
120630400 CGGAATTAATCACTAGCCAAATGTCTTCGGGACTTGACCCG
65 CGGAATTAATAACTAGCCAAATGCCTTCGGGACTTGACCCG
120630441 TTAGCATCCG
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 33 0.35
120 61 0.65
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (118 bp):
GCACAAATGCCTTCGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCC
GGAATTAATAACTAGCCAAATGCCTTCGGGACTTGACCCGGAATTAGTATCTC
Found at i:120636777 original size:28 final size:28
Alignment explanation
Indices: 120636710--120636779 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
120636700 AATGAGATTG
*
120636710 GCACTAAGTGTACGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
120636738 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
120636766 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
120636780 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:120644242 original size:29 final size:29
Alignment explanation
Indices: 120644208--120644282 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
120644198 TACTCGATTT
*
120644208 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
120644237 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
120644266 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
120644283 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:120644299 original size:29 final size:29
Alignment explanation
Indices: 120644266--120644339 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
120644256 CCTTCGAGCT
120644266 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
120644295 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
120644324 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
120644340 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Done.