Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 393 of 770
Found at i:120646054 original size:38 final size:38
Alignment explanation
Indices: 120646003--120646204 Score: 221
Period size: 38 Copynumber: 5.3 Consensus size: 38
120645993 ATATTCGATG
120646003 TATATCCGGGTTAAATCCTGAAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGAAGGCTTCGTGCTGGTAT
* *
120646041 TATATTCGGGTTAAATCC-CACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGA-AGGCTTCGTGCTGGTAT
* * *
120646079 TATATCCGGGCTTAAAGACCT-ACAGGCTTCGTGTTGGTAA
1 TATATCCGGG-TTAAA-TCCTGA-AGGCTTCGTGCTGGTAT
* *
120646119 AATATCCGGGTTAAAT-CTCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCT-GAAGGCTTCGTGCTGGTAT
* * * * *
120646157 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGAAGGCTTCGTGCTGGTAT
*
120646195 TATATTCGGG
1 TATATCCGGG
120646205 CCTTCGTGCC
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
37 3 0.02
38 98 0.70
39 11 0.08
40 28 0.20
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCTGAAGGCTTCGTGCTGGTAT
Found at i:120646111 original size:78 final size:76
Alignment explanation
Indices: 120646003--120646204 Score: 262
Period size: 78 Copynumber: 2.6 Consensus size: 76
120645993 ATATTCGATG
120646003 TATATCCGGGTTAAATCCTGA-AGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCACAGGCT
1 TATATCCGGGTTAAATCCT-ACAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCACAGGCT
120646067 TCGTGCTGGTAT
65 TCGTGCTGGTAT
* * ** * * *
120646079 TATATCCGGGCTTAAAGACCTACAGGCTTCGTGTTGGTAAAATATCCGGGTTAAATCTCGCAGGC
1 TATATCCGGG-TTAAA-TCCTACAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCACAGGC
120646144 TTCGTGCTGGTAT
64 TTCGTGCTGGTAT
* ** * *
120646157 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTATTATATTCGGG
120646205 CCTTCGTGCC
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
76 34 0.32
77 10 0.09
78 62 0.58
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (76 bp):
TATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCCCACAGGCTT
CGTGCTGGTAT
Found at i:120646349 original size:85 final size:86
Alignment explanation
Indices: 120646197--120646393 Score: 360
Period size: 85 Copynumber: 2.3 Consensus size: 86
120646187 GCTGGTATTA
* *
120646197 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCTTTCGTGCCTGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
120646262 AGGTTTCGTGCCGGTGATGTG
66 AGGTTTCGTGCCGGTGATGTG
*
120646283 TATTCGGGCCTTCGTGCCTAGCAGGCTTCG-GCCGGTGATGTGTATTCTGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
120646347 AGGTTTCGTGCCGGTGATGTG
66 AGGTTTCGTGCCGGTGATGTG
120646368 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
120646394 GTAATGCCGG
Statistics
Matches: 108, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 78 0.72
86 30 0.28
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.31
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGTTTCGTGCCGGTGATGTG
Found at i:120646406 original size:43 final size:43
Alignment explanation
Indices: 120646197--120646393 Score: 342
Period size: 43 Copynumber: 4.6 Consensus size: 43
120646187 GCTGGTATTA
120646197 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
120646240 TATTCGGGCTTTCGTGCCTGGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
120646283 TATTCGGGCCTTCGTGCCTAGCAGGCTTCG-GCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
120646325 TATTCTGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
120646368 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
120646394 GTAATGCCGG
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
42 40 0.28
43 103 0.72
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:120651026 original size:24 final size:24
Alignment explanation
Indices: 120650999--120651085 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
120650989 AATTTCAAAT
120650999 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
120651023 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
120651047 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
120651071 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
120651086 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:120651051 original size:48 final size:48
Alignment explanation
Indices: 120650999--120651107 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
120650989 AATTTCAAAT
** *
120650999 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
120651047 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
120651095 GCACTATGTGTGC
1 GCACTATGTGTGC
120651108 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:120651098 original size:24 final size:24
Alignment explanation
Indices: 120650999--120651107 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
120650989 AATTTCAAAT
*
120650999 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
120651023 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
120651047 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
120651071 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
120651095 GCACTATGTGTGC
1 GCACTATGTGTGC
120651108 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:120653986 original size:38 final size:38
Alignment explanation
Indices: 120653935--120654136 Score: 271
Period size: 38 Copynumber: 5.3 Consensus size: 38
120653925 ATATTCGATG
120653935 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
*
120653973 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
* * *
120654011 TATATCCGGGCTTAAAGACCTACAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCTGCAGGCTTCGTGCTGGTAT
*
120654051 AATATCCGGGTTAAAT-CTCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCT-GCAGGCTTCGTGCTGGTAT
* * * * *
120654089 TATATCTGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
*
120654127 TATATTCGGG
1 TATATCCGGG
120654137 CCTTTGTGCC
Statistics
Matches: 143, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
37 2 0.01
38 102 0.71
39 11 0.08
40 28 0.20
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
Found at i:120654042 original size:78 final size:76
Alignment explanation
Indices: 120653935--120654103 Score: 257
Period size: 78 Copynumber: 2.2 Consensus size: 76
120653925 ATATTCGATG
* * **
120653935 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAAACCTACAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTT
120654000 CGTGCTGGTAT
66 CGTGCTGGTAT
*
120654011 TATATCCGGGCTTAAAGACCTACAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCTCGCAGGC
1 TATATCCGGG-TTAAA-ACCTACAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGC
120654076 TTCGTGCTGGTAT
64 TTCGTGCTGGTAT
* *
120654089 TATATCTGGGATAAA
1 TATATCCGGGTTAAA
120654104 TCCCGCAGGC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
76 10 0.12
77 9 0.11
78 65 0.77
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (76 bp):
TATATCCGGGTTAAAACCTACAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTT
CGTGCTGGTAT
Found at i:120654324 original size:128 final size:129
Alignment explanation
Indices: 120654129--120654367 Score: 426
Period size: 128 Copynumber: 1.9 Consensus size: 129
120654119 GCTGGTATTA
* * *
120654129 TATTCGGGCCTTTGTGCCTAGCAGGCTTCCTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCCGGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
*
120654194 AGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTGGCAGGTTTCGTGCCGGTGATGTG
66 AGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
*
120654258 TATTCGGGCCTTCGTGCCTAGCAGGCTT-CGGCCGGTGATGTGTATTCTGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCCGGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
120654322 AGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
66 AGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
120654368 CGTAATGCCG
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
128 78 0.74
129 27 0.26
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.32
Consensus pattern (129 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCCGGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
Found at i:120654326 original size:85 final size:86
Alignment explanation
Indices: 120654129--120654368 Score: 410
Period size: 85 Copynumber: 2.8 Consensus size: 86
120654119 GCTGGTATTA
* * * *
120654129 TATTCGGGCCTTTGTGCCTAGCAGGCTTCCTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
*
120654194 AGGTTTCGTGCCGGTGATGTG
66 AGGCTTCGTGCCGGTGATGTG
*
120654215 TATTCGGGCCTTCGTGCCTGGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
120654280 AGGCTTCG-GCCGGTGATGTG
66 AGGCTTCGTGCCGGTGATGTG
*
120654300 TATTCTGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
120654365 AGGC
66 AGGC
120654369 GTAATGCCGG
Statistics
Matches: 146, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 79 0.54
86 67 0.46
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.32
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGCTTCGTGCCGGTGATGTG
Found at i:120654381 original size:43 final size:43
Alignment explanation
Indices: 120654129--120654368 Score: 401
Period size: 43 Copynumber: 5.6 Consensus size: 43
120654119 GCTGGTATTA
* *
120654129 TATTCGGGCCTTTGTGCCTAGCAGGCTTCCTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
120654172 TATTCGGGCCTTCGTGCCTGGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
120654215 TATTCGGGCCTTCGTGCCTGGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
120654258 TATTCGGGCCTTCGTGCCTAGCAGGCTTCG-GCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
120654300 TATTCTGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
120654343 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
120654369 GTAATGCCGG
Statistics
Matches: 186, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 40 0.22
43 146 0.78
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:120656821 original size:41 final size:41
Alignment explanation
Indices: 120656764--120656884 Score: 197
Period size: 41 Copynumber: 3.0 Consensus size: 41
120656754 AAAGCCACCG
120656764 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
1 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
* * *
120656805 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTCAATCG
1 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
* *
120656846 GTGGATCCATGGTCGTCAAGCAACCATGCAATCCTTAAT
1 GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAAT
120656885 TTCTTCCTCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (41 bp):
GTGGATCCACGGTCATCAAGCAACCATGCAATCCTTAATCA
Found at i:120657174 original size:27 final size:27
Alignment explanation
Indices: 120657122--120657457 Score: 250
Period size: 27 Copynumber: 12.4 Consensus size: 27
120657112 TTTTACCCTA
* * * *
120657122 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
120657149 CAAGTGTATTTTGGTAATTTTGCAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
120657175 CTAATGGTATTTCT-ATAATTTTTGAAAGT
1 C-AAGGGTATTT-TGGTAATTTTACAAA-T
* **
120657204 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
120657231 CAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
120657258 -AAGGGGTATTTTGGTAATTTTACAAAT
1 CAA-GGGTATTTTGGTAATTTTACAAAT
* *
120657285 CGAGGGTATTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * ***
120657312 CGAGGGTATTTCGATAATTTTACTGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
120657339 CGAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
120657366 CAGGGGTATTTTGATAATTTTTCAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
120657392 CTAGGGGTATTTTGGTAATTTTGCTAGT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
120657420 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
120657447 CAAGGGTATTT
1 CAAGGGTATTT
120657458 CAGTAATTCT
Statistics
Matches: 255, Mismatches: 43, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.02
27 227 0.89
28 23 0.09
29 1 0.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:120657484 original size:27 final size:27
Alignment explanation
Indices: 120657454--120657518 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
120657444 AACCAAGGGT
120657454 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
120657481 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
120657508 ATTTCAGTAAT
1 ATTTCAGTAAT
120657519 ACTAGTCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:120658937 original size:12 final size:13
Alignment explanation
Indices: 120658918--120658949 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
120658908 AATAAAATAC
120658918 TAAT-ATTTTAAA
1 TAATAATTTTAAA
120658930 TAA-AATTTTAAA
1 TAATAATTTTAAA
120658942 TAATAATT
1 TAATAATT
120658950 ACTTAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATAATTTTAAA
Found at i:120667187 original size:27 final size:27
Alignment explanation
Indices: 120666817--120667199 Score: 491
Period size: 27 Copynumber: 14.2 Consensus size: 27
120666807 AAAGTACTCC
120666817 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
120666844 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120666871 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
120666898 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * ** *
120666925 CGATTTGTAAAATTACTATTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
120666952 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
120666979 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120667006 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120667033 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
120667060 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
120667087 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
120667114 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
120667141 CAATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
120667168 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120667195 TGATT
1 CGATT
120667200 ATGAAATTAC
Statistics
Matches: 307, Mismatches: 45, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 303 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:120667234 original size:27 final size:27
Alignment explanation
Indices: 120667204--120667398 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
120667194 TTGATTATGA
120667204 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
120667231 AATTTTTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
120667258 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
120667285 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
120667312 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
120667339 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
120667366 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
120667393 AATTAC
1 AATTAC
120667399 CATTTTGCCC
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:120667272 original size:54 final size:54
Alignment explanation
Indices: 120667204--120667399 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
120667194 TTGATTATGA
* *** *
120667204 AATTACTGAAATACCCCTGTAGGGTAGAATTTTTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
120667258 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
120667312 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
120667366 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
120667400 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 119 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:120667636 original size:27 final size:26
Alignment explanation
Indices: 120667598--120667680 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
120667588 CGGAGGAAGC
120667598 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
120667625 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* ** * *
120667651 GTATTTGGTAACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
120667678 GTT
1 GTT
120667681 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:120667800 original size:22 final size:22
Alignment explanation
Indices: 120667768--120667826 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
120667758 CCCGTTATTA
*
120667768 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
120667790 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
120667812 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
120667827 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:120668012 original size:27 final size:27
Alignment explanation
Indices: 120667990--120668062 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
120667980 TAGGTGGGTT
*
120667990 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
120668017 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
120668044 TGTCACGATATCTGT-TCTG
1 TGCCACAATATCTGTATCTG
120668063 AGCATGCTGC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 4 0.10
27 36 0.88
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:120668187 original size:6 final size:6
Alignment explanation
Indices: 120668178--120668352 Score: 123
Period size: 6 Copynumber: 28.8 Consensus size: 6
120668168 TTGCATTCAC
*
120668178 ATTCTG ATTCTG ATTCTG CA--CGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG -ATTC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
120668226 -TTACTA ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTTTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * *
120668275 ATTCTG -TCACCTA ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
120668324 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
120668353 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 18, Indels: 36
0.71 0.10 0.19
Matches are distributed among these distances:
5 11 0.08
6 109 0.82
7 10 0.08
8 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:120668277 original size:31 final size:31
Alignment explanation
Indices: 120668235--120668299 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
120668225 GTTACTAATA
120668235 CTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATT
*
120668266 CTGATTTTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATT
120668297 CTG
1 CTG
120668300 TTACTAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (31 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:120668320 original size:24 final size:24
Alignment explanation
Indices: 120668211--120668347 Score: 136
Period size: 24 Copynumber: 5.6 Consensus size: 24
120668201 AATTCTGATT
120668211 CTGATTCTGATTCTGTTACTAATA
1 CTGATTCTGATTCTGTTACTAATA
* *
120668235 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTA-CTAATA
* *
120668260 CTGATTCTGATTTTGATT-CT-GTCA
1 CTGATTCTGATTCTG-TTACTAAT-A
*
120668284 CCTAATTCTGATTCTGTTACTAATA
1 -CTGATTCTGATTCTGTTACTAATA
* **
120668309 TTGATTCTGATTCTGATT-CTGTTA
1 CTGATTCTGATTCTG-TTACTAATA
120668333 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
120668348 ATTCTCATTT
Statistics
Matches: 92, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
23 1 0.01
24 52 0.57
25 37 0.40
26 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (24 bp):
CTGATTCTGATTCTGTTACTAATA
Found at i:120668456 original size:33 final size:32
Alignment explanation
Indices: 120668388--120668457 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
120668378 TTTCTTATTC
* ***
120668388 TGTAATGGGCTAAGTCCATCTGGTACTGTTGT
1 TGTAATGGGCTAAGCCCATCTGGTACTGAAAT
120668420 TGTAATGGGCTAAGACCCGAT-TGGTACTGAAAT
1 TGTAATGGGCTAAG-CCC-ATCTGGTACTGAAAT
120668453 TGTAA
1 TGTAA
120668458 GTAAGGCTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 14 0.44
33 16 0.50
34 2 0.06
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (32 bp):
TGTAATGGGCTAAGCCCATCTGGTACTGAAAT
Found at i:120670392 original size:27 final size:27
Alignment explanation
Indices: 120670362--120670901 Score: 657
Period size: 27 Copynumber: 20.2 Consensus size: 27
120670352 AAAGTACTCC
*
120670362 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120670389 CGATTTA-A-AATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
120670414 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
120670441 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
120670468 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
120670495 CGATTTACAG--TTACCGTTTTACCCTT
1 CGATTTACAGAATTACCGTTTTACCC-T
* *
120670521 TG-TTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120670547 CGATTTATAGAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
120670573 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
120670600 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
120670627 C-AGTTTACAGAATTACTGTTTTACTTT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
120670654 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
120670681 CGATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
120670708 CGATTTTCACAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120670735 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
120670762 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
120670789 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
120670816 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120670843 C-AGTTTACAGAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
120670870 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
120670897 TGATT
1 CGATT
120670902 GTGAAATTAC
Statistics
Matches: 441, Mismatches: 59, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
25 44 0.10
26 31 0.07
27 363 0.82
28 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:120670936 original size:27 final size:27
Alignment explanation
Indices: 120670906--120671099 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
120670896 TTGATTGTGA
*
120670906 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
120670933 AATTTCCGAAACA-CCCTATAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
120670959 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
120670986 AATTACCAAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
120671012 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
120671039 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
120671066 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
120671093 AATTACC
1 AATTACC
120671100 ATTTTGCCCC
Statistics
Matches: 139, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 43 0.31
27 96 0.69
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:120670990 original size:80 final size:81
Alignment explanation
Indices: 120670906--120671097 Score: 237
Period size: 80 Copynumber: 2.4 Consensus size: 81
120670896 TTGATTGTGA
* * * *
120670906 AATTACTGAAATACCCCTGTAGGGTAGAATT-TCCGAAACACCC-TATAGGGTATAATTACTGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAT-CGAAACACCCTTATAGGGTAGAAATACCGAA
*
120670969 ATACCCTTATAGGATAG
65 ATACCCCTATAGGATAG
* * *
120670986 AATTACCAAAATACCCCTGTA-GGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAACACCCTTATAGGGTAGAAATACCGAAA
* *
120671050 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * *
120671066 AATTACCGAGATACCCTTGTAGGGTAAAATTA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTA
120671098 CCATTTTGCC
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
79 18 0.19
80 68 0.72
81 9 0.09
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAACACCCTTATAGGGTAGAAATACCGAAA
TACCCCTATAGGATAG
Found at i:120671110 original size:54 final size:53
Alignment explanation
Indices: 120670906--120671100 Score: 216
Period size: 53 Copynumber: 3.7 Consensus size: 53
120670896 TTGATTGTGA
* * * * * * *
120670906 AATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAA-ACACCCTATAGGGTAT
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACCAAATAC-CCCTGTAGGGTAG
* * * *
120670959 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACC-AAATACCCCTGTAGGGTAG
*
120671012 AATTATCGAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTA-AAATTACC-AAATACCCCTGTAGGGTAG
*
120671066 AATTACCGAGATACCCTTGTAGGGTAAAATTACCA
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACCA
120671101 TTTTGCCCCT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
53 77 0.63
54 43 0.35
55 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (53 bp):
AATTACCGAAATACCCTTGTAGGGTAAAATTACCAAATACCCCTGTAGGGTAG
Found at i:120671335 original size:27 final size:26
Alignment explanation
Indices: 120671297--120671379 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
120671287 CGGAGGAAGC
*
120671297 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
120671324 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
120671350 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
120671377 GTT
1 GTT
120671380 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:120671499 original size:22 final size:22
Alignment explanation
Indices: 120671467--120671525 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
120671457 CCCGTTATTA
*
120671467 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
120671489 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
120671511 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
120671526 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:120671725 original size:27 final size:26
Alignment explanation
Indices: 120671695--120671760 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
120671685 TTTGCTACAT
*
120671695 TATCTGATTCTGGTGGCTCAGCCACAA
1 TATCTG-TTCTGGTGACTCAGCCACAA
* * *
120671722 TATCTGTATCTGGTGACTCTGTCACGA
1 TATCTGT-TCTGGTGACTCAGCCACAA
120671749 TATCTGTTCTGG
1 TATCTGTTCTGG
120671761 CAGCCATGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCAGCCACAA
Found at i:120671968 original size:5 final size:6
Alignment explanation
Indices: 120671902--120672062 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
120671892 CTGTCACGTA
* * *
120671902 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* *
120671950 ATTCT- ATTACTG ATT-TG ATTCTG ATTCTG -TCATCTA ATTTTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
120671998 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
120672046 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
120672063 TATTTTGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 28
0.77 0.07 0.17
Matches are distributed among these distances:
5 16 0.12
6 102 0.78
7 10 0.08
8 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:120672024 original size:84 final size:85
Alignment explanation
Indices: 120671877--120672062 Score: 304
Period size: 84 Copynumber: 2.2 Consensus size: 85
120671867 TTGCATTCAC
*
120671877 ATTCTGATTTTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
120671942 TGATTCTTATTCTATTACTG
66 TGATTCTGATTCTATTACTG
* *
120671962 ATT-TGATTCTGATTCTGTCATC-TAATTTTGATTCTGATTCTGATTCTGTTACTAATATTGATT
1 ATTCTGATTCTGATTCTGTCA-CGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATT
*
120672025 CTGATTCTGATTCTGTTACTG
65 CTGATTCTGATTCTATTACTG
120672046 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
120672063 TATTTTGGTT
Statistics
Matches: 94, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
84 77 0.82
85 17 0.18
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTATTACTG
Found at i:120672083 original size:30 final size:30
Alignment explanation
Indices: 120671877--120672062 Score: 224
Period size: 30 Copynumber: 6.4 Consensus size: 30
120671867 TTGCATTCAC
* *
120671877 ATTCTGATTTTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
120671908 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
120671938 ATTCTGATTCTTATTCTATTACTGATT-TG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
120671967 ATTCTGATTCTG--TC--AT-CTAATTTTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
120671992 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
120672022 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
120672052 ATTCTGATTCT
1 ATTCTGATTCT
120672063 TATTTTGGTT
Statistics
Matches: 135, Mismatches: 12, Indels: 17
0.82 0.07 0.10
Matches are distributed among these distances:
24 5 0.04
25 15 0.11
27 4 0.03
29 15 0.11
30 75 0.56
31 21 0.16
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:120685667 original size:77 final size:77
Alignment explanation
Indices: 120685540--120685695 Score: 312
Period size: 77 Copynumber: 2.0 Consensus size: 77
120685530 TTGAGGGATT
120685540 AAAGTGTAAATATGAAAAATTTGAAGGGCTAACAGTGCAAATATTTTAAGGGTGGAAGGATCTAA
1 AAAGTGTAAATATGAAAAATTTGAAGGGCTAACAGTGCAAATATTTTAAGGGTGGAAGGATCTAA
120685605 AAACCAAGGAAA
66 AAACCAAGGAAA
120685617 AAAGTGTAAATATGAAAAATTTGAAGGGCTAACAGTGCAAATATTTTAAGGGTGGAAGGATCTAA
1 AAAGTGTAAATATGAAAAATTTGAAGGGCTAACAGTGCAAATATTTTAAGGGTGGAAGGATCTAA
120685682 AAACCAAGGAAA
66 AAACCAAGGAAA
120685694 AA
1 AA
120685696 TTGATGAATT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.47, C:0.08, G:0.23, T:0.22
Consensus pattern (77 bp):
AAAGTGTAAATATGAAAAATTTGAAGGGCTAACAGTGCAAATATTTTAAGGGTGGAAGGATCTAA
AAACCAAGGAAA
Found at i:120686214 original size:16 final size:18
Alignment explanation
Indices: 120686184--120686221 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
120686174 CAAGGAATAG
120686184 AAGCTGGAGGAGAGAGAA
1 AAGCTGGAGGAGAGAGAA
120686202 AAGCTGGAGGAGAGAGAA
1 AAGCTGGAGGAGAGAGAA
120686220 AA
1 AA
120686222 TCAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.42, T:0.05
Consensus pattern (18 bp):
AAGCTGGAGGAGAGAGAA
Found at i:120701423 original size:28 final size:29
Alignment explanation
Indices: 120701383--120701481 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
120701373 GTAATAAGCC
*
120701383 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
120701411 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
120701439 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
120701468 CGCACACTTAGTGC
1 CGCACACTTAGTGC
120701482 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:120710591 original size:40 final size:40
Alignment explanation
Indices: 120710525--120710691 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
120710515 AAATTGAATG
* * *
120710525 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
120710564 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
120710604 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
120710644 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
120710684 ATATCCGG
1 ATATCCGG
120710692 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:120717677 original size:17 final size:18
Alignment explanation
Indices: 120717635--120717683 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
120717625 AGTTGAAAAG
120717635 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
120717654 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
120717671 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
120717684 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:120718633 original size:40 final size:38
Alignment explanation
Indices: 120718545--120718654 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 38
120718535 CTGGAAATTA
* * *
120718545 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGACT
* * *
120718584 TATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTATT
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGACT
120718623 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 -TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
120718655 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
38 3 0.05
39 29 0.48
40 27 0.44
41 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGACT
Found at i:120718668 original size:40 final size:40
Alignment explanation
Indices: 120718505--120718670 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
120718495 AAATTGAATG
* * **
120718505 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
120718544 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
120718584 -TATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
120718623 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
120718663 ATATCCGG
1 ATATCCGG
120718671 TTATATTCCG
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 43 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:120721384 original size:541 final size:542
Alignment explanation
Indices: 120720032--120725065 Score: 8553
Period size: 541 Copynumber: 9.3 Consensus size: 542
120720022 GTGTTACAAT
*
120720032 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACGTTTACAAATTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
* * *
120720097 TTTTTAGCATTTTTATTGGAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACTTGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
*
120720162 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGAACTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
120720227 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
* *
120720292 AACGGGGCAAGAACGGACTTACTATGGATCTTGGAAAGCTTAAACAAAACCCTAGCCATGATGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
*
120720357 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGATTTTATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
*
120720422 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATA
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
* * * *
120720487 TTTATACTTTTTCCCCTAGGGTTGGAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
* *
120720552 CAGAACCACTTTAATAACTATA
521 CCGAACCACTTTCATAACTATA
* *
120720574 AAAACCCACAATTTCCACTAAATCACACTTCTATAACAAATTTTATAACTTTTACAAATTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
* * * *
120720639 TTTTTAACATTTTCATTGAGAATCGCGTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
*
120720704 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTCCAAACCCTAGACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
120720769 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
*
120720834 AATGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
* * *
120720899 CTTCAAAATTTCGGCCAAGGGGTTGAAGATTACCAAAATTTCGCTTTTATTTTGTTTATTTAAAT
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
* * * * * * * *
120720964 AATTAATTCCTACATATTATCATACTATGGAAAAAATTAAATTTTTTCCACTAAATTTTATAATA
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
* *
120721029 TGTACACTTTTGCCCCTAGGCCTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
*
120721094 CCGAACCACTTTCATTACTAT-
521 CCGAACCACTTTCATAACTATA
*
120721115 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACATTTACAAATTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
*
120721180 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACAGGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
120721245 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
120721310 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
*
120721375 AACGGGGCAAGAACGGACTTACTATGGATCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
*
120721440 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACAAAAATTTGGCTTTTATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
* *
120721505 ATTTAATTACT-AATTTTATCATACTATGGCAAAAATTACATTTTTA-CCCTAAATTTTCTCA-A
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
* *
120721567 TTTACACTTTTACCCCTAGGCTTGTAAAATAA-TTTCATTCAATTTATTTTCACCTTAAGCCGAG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
* *
120721631 CCAAACCACTTTCATGACTATA
521 CCGAACCACTTTCATAACTATA
*
120721653 AAAACCCACAATTTCCA-TAAATCACACTTTTATGAAAAATTTTATAACTTTTACAAA-TAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
* *
120721716 TCTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTGTCCAACCATAAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
*
120721781 CTACCATTAAACATCAATATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
120721846 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
120721911 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
* * * *
120721976 CTTCAAAATTTTGGCCAAGGGGTTAAAGATGACCAAAATTTTGCTTGTATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
*
120722041 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTCTCATA
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
120722106 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACC-TAAGCC-AG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
*
120722169 CCGAACCACTTTCACAACTATA
521 CCGAACCACTTTCATAACTATA
120722191 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAA-TAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
120722255 -TTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
120722319 CTACCATTAAACATCAAAATACACAAATTT-TAACATGGTTCAAA-CCTAGACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
120722382 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
120722447 AACGGGGCAAGAACGGACTTACTATGGAGCTT-GAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
* *
120722511 CTTCAAAATTTTGGCCAAGGGGTT-AAGATGACCAAAATTTTGC-TTTATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
*
120722574 ATTTAATTA-TAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTCTCATA
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
120722638 TTTACACTTTTGCCCCTA-GCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTT-AGCC-AG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
* * *
120722700 TCGAACCACTTTCACAACTACA
521 CCGAACCACTTTCATAACTATA
* *
120722722 AAAACCCACAATTTCTACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAAGTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
*
120722787 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAATATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
* * * *
120722852 CTACCAATAAACATCAAAATACACAAATTTATCACATGGTTCAAACCTTAGATCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
*
120722917 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATAATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
120722982 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
* * *
120723047 CGTCAAAATTTCGGCCAAGGGGTTGAAAATGACAAAAATTTGGCTTTTATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
** * *
120723112 ATTTAATTACTAAATTTTATCATACTAT-GTCAAAATTACATTTTTTCCCCTAAATTTCATCATA
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
* *
120723176 TTTACACTTTTTCCCCTAGGTTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
*
120723241 CCGAACCACTTTCATAATTATA
521 CCGAACCACTTTCATAACTATA
* *
120723263 AAAACCCACAATTTCCACTAAATCACACTTTTATGACCAATTTTATAACTTTTACAAATCAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
120723328 TTTTTAGCATTTT--TTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
*
120723391 CTACCATTAAACAACAAAATACACAAATTTATAACATGG-TCAAACCCTAGACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
*
120723455 TCAAATAAATGGTAGACATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
120723520 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
* * *
120723585 TTTCAAAATTTCGGCCAAGGGGTTTAAGATGACCAAAATTTAGCTTTTATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
* * *
120723650 ATTTAATTACTAAATTTTCTCATACTAAT-GCAAAAATTACATTTTTTACCCCTAAATTTTCTCA
391 ATTTAATTACTAAATTTTATCATACT-ATGGAAAAAATTACA-TTTTTACCCCTAAATTTTATCA
* * * *
120723714 TATTTACACTTTT-ACCCTAAGCTTGTAAAATAA-TTTCATTCTATTTATTTTCACCTTAAGCCG
454 TATTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
*
120723777 AGCCGAACCACTTTCATGACTATA
519 AGCCGAACCACTTTCATAACTATA
* *
120723801 AAAACCCACAATTTCCATTAAATCACACTTTTATGAAAAATTTTATAACTTTTACAAATTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
*
120723866 TTTTTAGCATTTTCATTGAAAATTACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
*
120723931 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAAACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
* *
120723996 TCAAATAAATGGTAGAAATAGGCAGATAATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
* *
120724061 AACGGGGCAAGAACGGACTTACTATGAAGCTTGTAAAGCTTAAACAAAACCCTAGCCATGGTGGT
261 AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
* *
120724126 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACAAAAATTTGGCTTATATTTTGTTTATTTAAAC
326 CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
* * * * * * * *
120724191 ATTTCATTACTACATTTTATCATCCTATAGCAAAAATTACATTTTTGCCCCAAAATTTCATCATA
391 ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
* * *
120724256 TTTATACTTTTGCCCCTAGGTTTGCAAAATAATTTTCATTCAATTTATTTTCACCTTAA-CCTAG
456 TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
*
120724320 TCGAACCACTTTCATAACTATA
521 CCGAACCACTTTCATAACTATA
*
120724342 AAAACCCACAATTTCCACTAAATCACACTTTTATGATAAATTTTATAACTTTTACAAATTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
* *
120724407 TTTTTAGCATTTTCATTGAAAATCACATAGCAAAAGTTGTTTCTCCAACCATGAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
* *
120724472 CTACCTTTAAACATCAATATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
*
120724537 TTAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
196 TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
* * *
120724602 AACGGGGCAAGAATGGACTTACTAT-GATGCTTGTAAAGCTTAAACAAAACCTTAGCCATGGTGG
261 AACGGGGCAAGAACGGACTTACTATGGA-GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGG
*
120724666 TCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACAAAAATTTGGCTTTTATTTTGTTTATTTAAA
325 TCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAA
* * * * * * * *
120724731 CATTTCATTACTACATTTTACCATCCAATGGCAAAAATTACATTTTTGCCCCTAAATTTCATCAT
390 CATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCAT
* *
120724796 ATTTACACTTTTGCCCCTAGGTTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAACCTA
455 ATTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
120724861 GCCGAACCACTTTCATAACTATA
520 GCCGAACCACTTTCATAACTATA
* *
120724884 AATACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAAGTAGTCC
1 AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
*
120724949 TCTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
66 TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
*
120725014 CTACCATTAAACATCAATATACACAAATTTATAACATGGTTCAAA-CCTAGAC
131 CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGAC
120725066 TGTAACACCC
Statistics
Matches: 4256, Mismatches: 208, Indels: 57
0.94 0.05 0.01
Matches are distributed among these distances:
531 119 0.03
532 80 0.02
533 120 0.03
534 32 0.01
535 169 0.04
536 502 0.12
537 152 0.04
538 627 0.15
539 264 0.06
540 208 0.05
541 1259 0.30
542 724 0.17
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (542 bp):
AAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCC
TTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAAT
CTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAC
TCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAA
AACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGT
CTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAAC
ATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTACCCCTAAATTTTATCATA
TTTACACTTTTGCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG
CCGAACCACTTTCATAACTATA
Found at i:120726241 original size:28 final size:28
Alignment explanation
Indices: 120726206--120726264 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
120726196 CTAGGGTATA
120726206 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
120726234 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
120726262 TCG
1 TCG
120726265 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:120727833 original size:20 final size:20
Alignment explanation
Indices: 120727810--120727847 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
120727800 CACATCCAAA
*
120727810 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
120727830 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
120727848 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:120734165 original size:28 final size:28
Alignment explanation
Indices: 120734119--120734187 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
120734109 TTTAAAACCC
*
120734119 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
120734146 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
120734174 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
120734188 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:120735754 original size:20 final size:20
Alignment explanation
Indices: 120735731--120735768 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
120735721 CACATCCAAA
*
120735731 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
120735751 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
120735769 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:120736878 original size:537 final size:539
Alignment explanation
Indices: 120735799--120757190 Score: 15217
Period size: 539 Copynumber: 38.7 Consensus size: 539
120735789 GGATGTTACA
120735799 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA-GTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120735863 ACGTGAAAATCATTAAAAA--GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120735926 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120735990 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
* *
120736055 CCCTAAATTTTCTCATATTTACACTTTTCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
* *
120736120 TTCACCTTAAGCCCAGCCGAACCACTTTCACAACTATAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
120736185 CTTTTATGACAAATTTTATAACTTTTACAAAGTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
120736250 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
120736315 TTTATAACATGGTTCAAACCC
519 TTTATAACATGGTTCAAACCC
120736336 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120736401 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120736466 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGA-CAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120736530 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
120736595 CCCTAAATTTTATCATATTTACACTTTTACCCTAGG-TTGTAAAATAATTTTCATTCAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
120736659 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120736724 CTTTTATG-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
390 CTTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120736788 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120736853 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120736873 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120736938 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120737003 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120737068 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
* *
120737132 CCC---------T-ATATTTATACTTTTCCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
120737187 TTCACCTTAAGCCTAG-CGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120737251 C-TTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
*
120737315 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAATATACACAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
120737380 TTTATAACATGGTTCAAACCC
519 TTTATAACATGGTTCAAACCC
120737401 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120737466 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120737531 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120737595 ATTTTGTTTATTTAAACA-TTAATTACTAAATTTATCATACTATGG-AAAAATTA-ATTTTTGCC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
*
120737657 CCTAAATTTTAT-ATA-TTACACTTTTGCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
120737720 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
120737785 TTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
391 TTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120737850 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120737915 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120737935 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120738000 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120738065 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* *
120738130 ATTTTGTTTCTTTAAACATTTAATTACTAAAATTTATCATACTAT-GAAAAATATTACATTTTTG
196 ATTTTGTTTATTTAAACATTTAATTACT-AAATTTATCATACTATGGCAAAA-ATTACATTTTTG
120738194 CCCCTAAATTTTATCATATTTACACTTTTACCCTCA-GCTTGTAAAATAATTTTCATTCAATTTA
259 CCCCTAAATTTTATCATATTTACACTTTTACCCT-AGGCTTGTAAAATAATTTTCATTCAATTTA
*
120738258 TTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA
323 TTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA
120738323 CACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
388 CACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
120738388 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
452 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
120738453 AATTTATAACATGGTTCAAACCC
517 AATTTATAACATGGTTCAAACCC
120738476 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120738541 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
** * * *
120738606 ACCCTAGCCATGGTGGTCTTCAATCTTTCGGCCGAGGTGTTGAAAATGACTAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120738671 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
* *
120738736 CCTAAATTTTATTAT-TTTACACTTTTGCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
* * *
120738800 TCACCTTAAGCCTAGCTGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAGTCCCAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
120738865 TTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
391 TTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120738930 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120738995 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120739015 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120739080 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120739145 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120739210 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGG-AAAAATTACA-TTTTGCC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
120739273 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
120739338 TCA-CTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
120739402 TTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
391 TTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120739467 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120739532 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120739552 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120739617 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120739682 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120739747 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGC-AAAATTACATTTTTGCC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
120739811 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
*
120739876 TCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
120739941 TTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
391 TTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120740006 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120740071 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120740091 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120740156 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
**
120740221 ACCCTAGCCATGGTGGTCTTCAATCTTTCGGCCGA-GGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120740285 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTG-
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
* * *
120740349 CCCTAAATTTTATCAT-TTTACACTTTTGCCCCGAGCCTTGTAAAATAATTTTCATTCAATTTAT
260 CCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTAT
120740413 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
324 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
120740478 ACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
389 ACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
120740543 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
453 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
120740608 ATTTATAACATGGTTCAAACCC
518 ATTTATAACATGGTTCAAACCC
120740630 TA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120740694 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120740759 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* * *
120740823 ATTTT-TTTATTTAAATATTTAATTACTAAATTT-T-AT-C-AT-------TTTACACTTTTG-C
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
** * *
120740875 CCT--AGCTTGT-A-A---A-A----TA----A---TTTT-----------CATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
120740910 TCACCTTAAGCCTAGCC-AACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
* *
120740974 TTTTATGACAAATTTTATAACTTTTACAAATTAGACCTTTTTATCATTTTCATTGAAAATCACTT
391 TTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120741039 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120741104 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120741124 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* *
120741189 ACGTGAAAATCATTAAAAACGGGGAAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAACCAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120741254 ACCCTAGCCATGGTGGTCTTCAAACTTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* *
120741319 ATTTTGTTTATTTAAACATTTAATCACTGAAATTTATCATACTAT-G-AAAAATTACATATTTGC
196 ATTTTGTTTATTTAAACATTTAATTACT-AAATTTATCATACTATGGCAAAAATTACATTTTTGC
*
120741382 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTTAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120741447 TTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120741512 CTTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
390 CTTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120741577 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120741642 TTATAACAT-GTTCAAACCC
520 TTATAACATGGTTCAAACCC
120741661 TAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120741725 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120741790 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120741855 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
** *
120741920 CCTAAATTTTATCAT-TTTACACTTTTTTCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
*
120741984 TCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
120742049 TTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
391 TTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120742114 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACA-AAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
120742178 TTATAACATGGTTCAAACCC
520 TTATAACATGGTTCAAACCC
120742198 TA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120742262 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT-GAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120742326 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGA-CAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* *
120742390 ATTTTGTTTATTTAAACATTTAATTACTAATTTTA-CATCCTATGGCAAAAATTACATTTTTGCC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
120742454 CCTAAATTTTATCATATTTACACTTTTACCCTA-GCTTGTAAAATAATTTTCATTCAATTTATTT
261 CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
*
120742518 TCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
326 TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
120742583 TTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
391 TTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
120742648 GCAAAAGTTGTTTCTCCAACCATAAA-ATGCATAATCTACCATTAAACATCAAAATACACAAATT
456 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
*
120742712 TATAACATAGTTCAAACCC
521 TATAACATGGTTCAAACCC
*
120742731 AAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTT-AAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
*
120742794 ACGTGAAAATCATTAAAAATGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120742859 ACCCTAGCCATGGTGGTCTTC-AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT-GCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120742922 ATTTTGTTTATTTAAACATTTAATTACT-AATTTATTCATACTATGGAAAAAATTACA-TTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTA-TCATACTATGGCAAAAATTACATTTTTGC
* *
120742985 CCCTAAATTTTATCAT-TTTACACTTTTGCCCTAGGCTT-TAAAATAATTTTCATTTAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
120743048 TTCACCTTAAGCCTAGCCGAACCACTTTCATAAC--TAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120743111 C-TTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
* * * *
120743175 TAGCAAAAGTTGTTTCTCCAGCCATAAACATGCATAATCTATCATTAAACATCAAAATAAAGAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
*
120743240 TTTATAACATGGTTCAAGCCC
519 TTTATAACATGGTTCAAACCC
** *
120743261 TAGACCTTCATTGTAACTCAAATAAATGGTAGAAATAGGTAGATCATGTGT--AA-CA--TC---
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGT-TACAAGGATTTCAAA
* * ** * * * ** **
120743318 --C-TG--AAT--TT------GGGGCCTAGAA--GAGTTGGGTTTTGAGTCTGGGATTCGGATAG
65 AACGTGAAAATCATTAAAAACGGGG-CAAGAACGGACTT-ACTATGGAG-CTTGGA-AAGCTTA-
* *** * ** * * *** *** ** *
120743368 AAGAAAA-CCTGAATAATTAAGAAGT-TTTAATTATTATCGTTTAAGAAAGAATTTTTA-CT-AC
125 AACAAAACCCT-AGCCA-T-GGTGGTCTTCAA-AATT-TCG--GCCG--AGGGGTTGAAGATGAC
* ** ** * *
120743429 TAGGAAATTCTTACTATATTTATTATTATGGATATTTTAA-ATTT--TTA-TGAAATTTTAATTA
181 CA--AAATT-TGGC--T-TTTA-T-TT-TGTTTATTTAAACATTTAATTACT-AAA-TTT-ATCA
* * * * ** *
120743490 GTATTATGAGATAAAATTATTATTATTAGAAAATTTGACTGTATCTATTTT-T-ATTGATTTATG
234 -TACTATG-G-CAAAA--ATTA-CATT------TTTGCCCCTA--AATTTTATCA-T-ATTTA--
* * * ** *** * * ** **
120743553 GAAATTATA-ATTATTATTAGGAAAAAAATATATAT-ATTATCGTGTTTGAAATTTTCATTATTA
281 -CACTTTTACCCTAGGCTT-GTAAAATAAT-T-T-TCA-T-TC-AATTT---ATTTTCA-CCTTA
* ** ***** ** * ** * * * ** * * * * * * ** * *
120743616 TGGTTATTATTATTATTATTGTTTTAGTTTTTAAA--TA-AA-TTACAATGGATTTA-AAGTGTG
334 AGCCTAGCCGAACCACT-TT-CATAACTATAAAAACCCACAATTTCCACT-AAATCACACTTTTA
* ** * * ** * *
120743676 GGAAAAATTCGGACCAAGAC-TCTAGCAAAAAAATTA-TTATTTTT-GCTTCTTTAGGGGATTGG
396 TG-AAAATT-TTA--TA-ACTTTTA-C----AAATTAGTCCTTTTTAGCAT-TTT----CATT-G
* * * * ** * * * * * * *
120743738 ACATTAAGGTTTATTAATAAGTTAG--GCT--AA-AATTAGACATAAGGAGGAGTCTGGCCCAGT
445 AAAATCA--CTTAGCAA-AAGTT-GTTTCTCCAACCA-TAAACAT--GCA-TAATCT--ACCA-T
* ** ****** * *** ** *
120743798 GGTTAGGAGTGTTGGGCAGCAGAAAGGGA-ATGA-GGTTCGATACCC
499 --TAAACA-T-CAAAATA-CACAAATTTATAACATGGTTC-AAACCC
* * * * **** *** ** * * * * ** *
120743843 -AG-CGTGC-GCA-AATTGGGTTTTTTTTTAGTATACAGGTTG--C-GGTTGGA-ATAGGCCTTA
1 TAGACCTTCATCATAACTCAAATAAATGGTAG-AAATAGGTAGATCATGTT--ACA-AGGATTTC
** * * * * * *
120743900 AAGGAAGTTACGAATGAAGTTTGACA-CAAAGAGAGCCTGTGGTGCAGTGACAAGCAACGTA-TG
62 AA--AA---ACG--TGAA-AAT--CATTAAA-A-A--C-G-GG-GCA-AGA-ACG-GACTTACTA
* * ** ** * ** * * * * *** ***
120743963 TGTGTG-TT-AAAGAGGTCGCAGGTTCGATTCCGTA--CGTGAGCGAATCCTGT-TTTATTTTTA
107 TG-GAGCTTGGAA-A-G-CTTA--AACAAAACCCTAGCCATG-GTG-GT-CT-TCAAAATTTCGG
** * *** * * ** ** ** * * * *
120744023 AAGTGGGCCAGAA-CTGAAGC-AGGTAAGG--TTTA--TAATTTATTGTGACCATGT-ATTAGCA
162 CCGAGGGGTTGAAGATG-ACCAAAATTTGGCTTTTATTTTGTTTATT-TAAACATTTAATTA-CT
*** * * ** * * * ** * * * ***** ** *
120744081 AGGAAGGAAGCCTGGTGCAGTGGCCAACA--GCATGGGCGTGGGCGCT-AGGCGGA-CGGAGGTC
224 A--AATTTATCATACT--A-TGGCAAAAATTACAT---TTTTGCCCCTAAATTTTATC--ATATT
**** ** * * * * * * * ** *
120744142 TGGGGTTCGAGTCC-AGGC----AAAGGTATGTTTTAATGT-TATAT-TTTTAAAATGAACAGGA
279 TACACTTTTA-CCCTAGGCTTGTAAA-ATA-ATTTTCAT-TCAATTTATTTTCACCT-TA-A-G-
* * * **** * * * * *
120744200 CTTCAGCAGGTAA-C-C-TT--TAA-GATAAAAGGTGACGGTATATT--ATTGAAAACA-AATGC
336 CCT-AGC-CG-AACCACTTTCATAACTATAAAAACCCAC--AAT-TTCCACT-AAATCACACT-T
*** *** * *** * * *** ** **** ** * ** * *
120744256 CCGTCCCAGTGGCCAGCAGCGTGCTGGGCAACCT-GGGGGTCCTA--A-GTTC---GATCAGCGC
393 TTATGAAAAT-TTTA-TAAC-T--TTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
* * * ***** * * * ** ** * *
120744314 TATGCGCAAAAGGGTGATTCTTTTTGC-TGAACGTGCGTGGAA-GGACCGTATGGAA-TTGAAAC
453 T-T-AGCAAAA-GTTGTTTCTCCAACCATAAACATGCAT--AATCTACC--ATTAAACATCAAA-
* ** ** * ** * * ****
120744376 GGTAC-CAGCTGCAGGAGGAGTCGGCT-GAGTGG
510 -ATACACAAATTTA-TAACA-T-GGTTCAAACCC
** * ** * * * * * * * *
120744408 GGGACTGCTGCTCAGCAGTGGGAGTTTGAATTAAAT--TCA-AACT---TTGATTATG--GCCAT
1 TAGAC--CT--TCATCA-T---A-ACTCAAATAAATGGT-AGAAATAGGTAGATCATGTTACAAG
* * * ** * **
120744465 GAATT-AAGGAGATAAG-GAAGGA--ATT-AAAA-TTGG-AA-AA-GGA-TT-TTATTTTA--TT
56 GATTTCAA--A-A-ACGTGAA-AATCATTAAAAACGGGGCAAGAACGGACTTACTA-TGGAGCTT
** * * *** ** * ** ** * * ** ***
120744517 -CTAATCTTAATCTTATTTCTTTTTGCTC-TTATTCTTTTCTATTTTTC--CC-AAAAG-TGAAC
115 GGAAAGCTTAAAC--AAAAC-CCTAGC-CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAA-
* *** ** * *** * * * * * * ***
120744576 AATTTTCTCATTTTTTTTTAATTATTTTCTTTCCTTCTCTCATCTATTCCCTATTTTCTTTTCTT
175 GATGACCAAAATTTGGCTT--TTATTTTGTTT--AT-T-TAAAC-ATT---TAATTAC-TAAATT
* * * *** ** ** * *
120744641 TCTCCT-CT-TGCCAATTGTT-C--TTAAGCTAATCCCTCTATTTTCTC-T-TTCGT-TA-TTTC
229 TATCATACTATGGCAAAAATTACATTTTTGC----CCCTAAATTTTATCATATT--TACACTTT-
* ** * *** * * * * *
120744697 TTCCAC-AAACTCTCTACCTCTCATTCTTCCTCTC--TTTCATTTAT-A-GTAAAAG-CTGAACC
287 TACC-CTAGGCT-TGTA-AAATAATT-TTCAT-TCAATTT-ATTT-TCACCT-TAAGCCT-AGCC
* * * * * ***
120744756 GATATTC-TTTTCATTGCTAACCGAATATCAACAAGCCGA-AATCCTGTGATCACTGCTTGTGC-
343 GA-A-CCACTTTCA----TAA-C---TAT-AA-AAACCCACAAT--T-T--CCACT--AAAT-CA
* ** * * * * ** * *
120744818 CGA-TTTCT-TCAAAGCCAGGTTCT-CCTATGTT-C--TTTTGTTTTTATTTA-CAATTATCTTT
388 C-ACTTT-TATGAAA---ATTTTATAACT-T-TTACAAATTAGTCCTT-TTTAGC-ATTTTC-AT
*** * * * *** * ** * * * *
120744876 TCTTAATC-CTAGATACCTGACAGCAATTCTACTTCAAGGTTATAGCCCCACAT-TATCATCT-T
443 TGAAAATCACT---TAGC-AAAAGTTGTT-T-CTCCAA--CCATA----AACATGCATAATCTAC
* * * * * * * * ****
120744938 C-TTCACCACCCAAAA-GC-CGAAA---GTACCACGGATTTAGGGGC
496 CATTAAACA-TCAAAATACAC-AAATTTATAACATGG-TTCAAACCC
* ** * * ** * * ** *
120744979 TTGTAGCC-GGAAC-T-TCTTCAAACT-CCT-G--G-ATTCGGGTTTTACCATTGTT-CTAAGGA
1 TAG-A-CCTTCATCATAAC-TCAAA-TAAATGGTAGAAAT-AGG-TAGATCA-TGTTAC-AAGGA
** ** * * * **
120745035 TAAATCTGCACCGATTGTGAGGAAATCAAGTAGGAGTAAA--GGGTAAGTACTTATCATCTCAGA
58 T---T-T-CA-AAAACGTGA--AAATC-ATTA--A--AAACGGGGCAAGAACGGA-C-T-T---A
* ** ** ** * *** * *
120745098 TCTGTTCTTATTTTTCAAAG-TTAAGAAAAGCCGAAATCCCTAAAATATAGG-GAGGCTGTC-GA
104 -CT-AT-GGAGCTTGGAAAGCTT----AAA--C-AAAACCCT-AGCCAT-GGTG-GTCT-TCAAA
* * * * ** * * *
120745160 ATTGGGCATGTGGCTCTAAGGGTTTTTAACTGACGTTTTCTGTCAATGATTAGTGTCTTCTTA-A
155 ATT-----T-CGGC-C-GAGGG-GTTGAA--GA---TGAC---CAA-AATT--TGGCTT-TTATT
* * * * * * * *
120745224 GTGTTGGATTGAAAGCGTGAATCATTGGAAC-AATCGGATTCGGAGCTAGCTATCGACTGTGGCA
199 TTGTT-TATTTAAA-CAT--TTAATT---ACTAA----ATT------TATC-AT--ACTATGGCA
* * ** *** * ** *
120745288 AAAAGGTA-ATGTTT----C-AAAGGCTT-T--TAGGGACA-TGGTT-CGATCATGG---GT-GA
244 AAAA-TTACATTTTTGCCCCTAAA-TTTTATCATATTTACACT-TTTACCCT-A-GGCTTGTAAA
* * * * * ** ** * * * * * * **
120745338 GTAAGTTTTGGAATTTAGTGATTATGGTTTGTA-AATAAGAATTGTGCTAATCAATTTTAGGA-T
304 ATAA-TTTT--CATTCAAT--TTAT--TTT-CACCTTAAGCCTAG-CCGAACCACTTTCATAACT
* * * * * ** * * *
120745401 ATTGAAAGAGATCTCAGTAGCA-GTCGTCGC-GAATCA-GGTGTGTACCGAACACCCTTTCTTAG
360 A-T-AAA-A-A-CCCA-CA--ATTTC--CACTAAATCACACT-TTTA-TGAA-A---ATT-TTA-
*** ** * * * * **
120745463 TTCAA-TTCGGCAAAAGCCGAAATGCCGAAATTCTGGCATTTCATGGTCATGTGAGTATGCGTAT
407 -T-AACTTTTAC-AAA---TTAGT-CC---TTTTTAGCA-TT--T--TCAT-TGAAAAT-C--A-
* * ** * * * * **
120745527 GCTCTCAAGTCATAGAGTAATTGTTAGATCTGGC-ACC-GCAAGATG-GTAAGC-A-CGTT-CGC
452 -CT-T--AG-CA-A-A--AGTTGTT---TCT-CCAACCATAAACATGCATAATCTACCATTAAAC
* * *** ** ** * * * * ***
120745586 GTGACGTTTTAGCGTATTTCAGAAAAAGGGGCTCGATGGGCC
504 ATCAAAATACA-CAAATTT-A-TAACA-TGGTTC-A-AACCC
* * **** * ** * ** * * * * * *
120745628 AAAATGGGC-CCAATGGGCTTACGACCAACATGGGTAAGAGATGGGCAAATTAGCCTGTTAGGTA
1 TAGACCTTCATC-AT-AAC-T-CAAATAA-AT-GGT-AGAAATAGGTAGA-T--CATGTTA--CA
* * * * *
120745692 GATGGTGGAGTCAAATTGCATAAAACCGATAAAAATTACTGAATTAGCTTGTGTAGTAGCATAGA
54 -A----GGA-T----TT-CA-AAAA-CG-TGAAAATCA-TTAA-AAAC--G-G--G--GCA-AGA
* * ** * * * * * *
120745757 TCACGTAATTACCCCTAAAGAGC----AAA-ATT-ACCAATA---TACCCCTAG-GGT-TT--AA
95 --ACGGACTTA---CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAA
* ** ** * * *** * ** *
120745809 A-TT-GGCTGAACTGCATGATTGATTACTACTGTATTTTGCATGATATGCATTTCTTAATATCTG
155 ATTTCGGCCG-AGGGGTTGA-AGATGAC--CAAAATTTGGC-TTTTAT---TTTGTT--TAT-T-
** *** ** ** ** ** ** **
120745872 T-TGCATGGGATTGGGGTATTAATGGAGGAAGTACTGAAAGTGGTTCATCCACGTACTGGAGGCT
208 TAAACATTTAATT--ACTA--AATTTA-TCA-TACT---A-TGG--CA-AAAATTAC---A-TTT
* * ** * * *** * ****
120745936 TTGCCTCAACTGACTGAAATTTGAGCAGCGTTGCTGCAACTGTGGT-GTGTAGGGCTGGGTGGGT
256 TTG-C-C--C---CT-AAATTTTATCA-TATT--TAC-ACT-T-TTACCCTA-GGCT-TGTAAAA
* ** * * * ** ****
120746000 TGAGATATTC-CCCACATGGTGTGTAGGGTTGGT-ACGGGGCAGTGT-AGCGGTTGGTGGGTTGA
305 T-A-ATTTTCATTCA-A---T-T-TA---TT-TTCAC----C--T-TAAGC--CTAGCCGAACCA
* * * ** * * **** * * * ** ** * * *
120746062 GTAGTCCTCCCCAGATGGGCTTGCATTCATTATTACTGTTGAT-ACTCATGTTACTG-AACTGGG
349 CT-TTCATAACTATAAAAAC--CCA--CAAT-TTCCACTAAATCACAC-TTTTA-TGAAAAT---
** * * * ** **
120746125 CCTATGGGCCACACTGTTATGTAAAAAGGGGCTAAGGCCTTGCTA-C-TGTATTC--TGAAAAGG
403 TTTAT-----A-AC--TT-T-TACAAA-----TTAGTCCTTTTTAGCAT-T-TTCATTGAAAATC
* * ** * * *** * * * * * ** * *** * **
120746186 GCTTCGGC-CTA-CTGTGTACTGTTATC-TGAATAGGGCTTAGGC--CCAATGGGC-TCGAGCTG
451 ACTT-AGCAAAAGTTGT-TTCTCCAACCATAAACA-TGCATAATCTACCATTAAACATCAAAAT-
***** ** * *
120746245 A-ATTGGGCTT-T-GGATGGGTTTCTGTATACAC
512 ACA-CAAATTTATAACAT-GG-TTC---AAACCC
** ** ** *** * *
120746276 T-GAGTTTTCCCAAACTCACCCCCTTCCTCTTCCATCCTTGCAGGTGAGCCCTAGAATTGGTGGA
1 TAGA-CCTT--C--A-TCA-----TAACTC--AAATAAAT---GGT-AG----A-AATAGGTAGA
* * ** *** * **
120746340 -CTTG-GAGCTGGGCGGGA-TTCAGAGTGGCCATGAAGATTGATTGCCGATTTTAAATAA--GTT
44 TCATGTTA-C----AAGGATTTCA-A--AAACGTGAA-A---A-T--C-A--TTAAA-AACGGGG
* * * * * ** * ** * * **
120746400 TAATATTTATTTTGGA-TTATTTTTAT-TATGCTT--AAAG-TTGTA-ATAA-GGTCGCTCTTTT
90 CAAGA---A---CGGACTTA---CTATGGA-GCTTGGAAAGCTTAAACAAAACCCTAGC-CATGG
** * * * *** * * * * **
120746458 TAATTACTT--ATATTTTGG-GGA-TTATT-AA-ACTGGCTAGCACTAGGGTTCGTTTTATAAAA
144 T-GGT-CTTCAAAATTTCGGCCGAGGGGTTGAAGA-TGACCA-AAATTTGG--C-TTTTAT----
** * * * * * * ** * * *
120746517 TCTACTTGTTTTTAAAAAGATCACGATGACGCGCAAAGTTTCGCAAAGTAAATGTTTTCCCAAGA
198 T-TTGTT-TATTTAAACA-TTTA--ATTA--C-TAAA-TTTATCATACT--ATG-----GC-A-A
* * *** * * * * * * *
120746582 AAAATAAATATTTT-AAGC-AAACGATTT-GCA-ACCTTA-ATCATTTT--CTTAAGCTGGTCAT
245 AAATTACAT-TTTTGCCCCTAAA--TTTTATCATA-TTTACA-C-TTTTACCCTAGGCTTGT-AA
* **** ** ** * * ** * *
120746640 AATCAAACGGTTTTC--TCAAAATTATACGAGATGTTAGAGTGT-GGC-AATGGCGGTGTGCATG
303 AAT--AA---TTTTCATTC-AATTTAT-TTTCACCTTA-AGCCTAGCCGAA--CCACT-TTCATA
* *** * * * *** ** * **
120746701 TCTAGGATTGGATCCGAAGAGAGAGCTTGGTACTTAAGCAGTC-CGAC--GGACT-CACCTCCTC
357 ACT---ATAAAAACC---CACA-A--TTTCCAC-TAA--A-TCAC-ACTTTTA-TGAAAAT--T-
* ** * * ** * *** * * ** **
120746762 TTCTTCCTGGTTTCCTACCTGGTGCGCAGCTT-CCA--TTCACTTTAACCT-ACTT-TTAAAAG-
404 TTATAACT--TTTACAAATTAGT-C-CTTTTTAGCATTTTCA-TTGAAAATCACTTAGCAAAAGT
* * ** ** * * ** *
120746821 TGTCTTTTACAA-CACCAAC-T-CA-GCTTTTCC---AAAC-T-AAGTAATAC-GGAATGTTTTG
464 TGT-TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAA--AATACACAAAT-TTAT-
** * *
120746876 AAC--GCATCAATGTGGCGCA
524 AACATGGTTCAA----AC-CC
** * ***** * *** * * *
120746895 TCAGATCC--GGTCATAACGTC-CAGGCCGGGTTTGGGGT-GTTACATCATGTTACAAGCATTTC
1 T-AGA-CCTTCATCATAAC-TCAAATAAATGG-TAGAAATAGGTAGATCATGTTACAAGGATTTC
* * * *
120746956 AAAATCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTGTGGAGCTTGGAAAGCTTAAA
62 AAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAA
* * **
120747021 CAAAACCCTAGCCGTGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTAC
127 CAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGC
120747086 TTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTATTCATACTATGGCAAAAATTACATTT
192 TTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTA-TCATACTATGGCAAAAATTACATTT
* * * *
120747151 TTACCCCTAAATTTTATCAT-TTTACACTTTTGCCCCCAGGCTTTTAAAATAATTTTCACTT-AA
256 TTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCA-TTCAA
** *
120747214 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTAGGAAAACCCACAGTTTCCACTAA
319 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
*
120747279 ATCACACTTTTATGACAAATTTTGTAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
384 ATCACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
*
120747344 ATCACTTAGCAAAAGTTGTTTCTCCAGCCATAAACATGCATAATCTACCATTAAACATCAAAATA
448 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
* * *
120747409 AAGAAATTTATAACATGGTTCAAGCCC
513 CACAAATTTATAACATGGTTCAAACCC
** *
120747436 TAGACCTTCATTGTAACTCAAATAAATGGTATAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* * *
120747501 TCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120747566 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* *
120747631 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTATATATTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
* * *
120747696 CCCTAAATTTTATCATAATTACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120747761 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTACATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120747826 CTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
*
120747891 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTTAACATCAAAATACACAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
**
120747956 TTTATAACATTATTCAAACCC
519 TTTATAACATGGTTCAAACCC
* * * *
120747977 TAAACCTTCATCATAACTCAAGTAAATGGTAGAAATAGGAAGATCATGTTACAAGGATTTAAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* *
120748042 ACGTGAAAATCATTAAAAACGGGGCAAGAAAGGACGTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
** * *
120748107 ACCCTAGCCATGGTGGTCTTCAATCTTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120748172 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
** * * *
120748237 CTTTAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTTAATTTAT
260 CCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTAT
120748301 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
324 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
*
120748366 ACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTCCATTGAAAATCAC
389 ACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
* *
120748431 TTAGGAAAAGTTGTTTCTCCAACCATAAACATGCGTAATCTACCATTAAACATCAAAATACACAA
453 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
* *
120748496 AATTATAACATGGTTTAAACCC
518 ATTTATAACATGGTTCAAACCC
* *
120748518 TAGACCTTCATCATAACTGAAATAAATGGTAGTAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* *
120748583 ACGAGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* *
120748648 ACCCTAGCCATGGTGGTCTTTAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* * *
120748713 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTAC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
* *
120748778 CGCTAAATTTTATCAT-TTTACACTTTTACCATAGGCTTGTAAAATAATTTTCATTCAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120748842 TTCA-CTCTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAA
325 TTCACCT-TAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
*
120748906 ACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
389 ACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
* * *
120748971 TTAGCAAAAGTTGTTTCTCCAACTATAAACATGCATAATCTACCATTAAATACCAAAATACACAA
453 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
* *
120749036 AATTATAACATGGTTTAAACCC
518 ATTTATAACATGGTTCAAACCC
*
120749058 TAGACCTTCATCATAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
*
120749123 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAACCAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* * * * * * * **
120749188 ACCCTAGCCATGGAGGTTTTCAAACTTTAGGCCGAGGGGTTGAA-AT-A-CATAATCT-ACCATT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
**** ** ** * * * ** * ** **
120749249 A-AACATCAAAATACACA--AAATTA-TAACATGGTT-T-AAACCCT---AGACCTTCATCATAA
196 ATTTTGTTTATTTAAACATTTAATTACTAA-AT--TTATCATACTATGGCAAAAATT-A-CATTT
* *** ** ** ** * * * * * **
120749305 CT-CAAATAAATGGTAGAAATAGGTAGATCATGTTA--CAAGGATTTTAAAAACGTGAA-AATCA
256 TTGCCCCTAAATTTTA-TCATATTTACA-C-TTTTACCCTAGGCTTGT-AAAA--T-AATTTTCA
* *** *** ** * * *** ** *
120749366 TTAAAAACA-GGGCA--AGAACGGACTTA--CTATGGAGCTTGGA-AAGCATAAACAAAACCCTA
314 TTCAATTTATTTTCACCTTAA--G-CCTAGCCGAACCA-CTTTCATAA-C-TATA-AAAACCC-A
* * * * ** * **
120749425 GCCATGGTGGTCTC-CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA-ATT-TGGCTTTT---
371 -CAAT--T--TC-CACTAAA--TC--AC-A---CTT--TTATGA--AAATTTTATAACTTTTACA
* * * * * * * * *
120749484 ATTTTGT--TTATTTAAACA-TTTAATTACTAAACTTTATCATACTATGGAAAAAAATTACATTT
418 AATTAGTCCTT-TTT-AGCATTTTCATT--GAAA----ATC--ACT-TAG-CAAAAGTT--GTTT
* * * * * * *
120749546 TTGCC--CC-TAAATTTTAT-CATAAT-TACACTTTTACCCTAGGCTTGTAAAATTATTTTCATT
469 CT-CCAACCATAAA---CATGCATAATCTAC-C-ATTA----A-ACAT-CAAAA-TA----CA-C
* ** ** *
120749606 TAATTTATTTTCA-CCTT--AAGCC
516 AAATTTA-TAACATGGTTCAAACCC
* * *** * **
120749628 TAGCCGAACCACTT--TCATAACTATAAAAACCCACAATTCCCACTAAATCACACTTTTATGA-C
1 TA---G-A-C-CTTCATCATAAC--T-CAAA--TA-AA-TGGTA-GAAAT---A--GGTA-GATC
* * ** * * *** ***
120749690 AAATTTTATAA-CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAA-AA
46 --ATGTTACAAGGATTT-CAAA--A--AC---GT-G-AAAATCATT-AAAA--ACGGGGCAAGAA
*** * ** * * * * * ** ******* *
120749753 -GTTGTTTCTCCGG-CCCT-AAACATGCATAATCTACCATTAAA-CATCA-AAATACACAAATTT
96 CGGACTTACTATGGAGCTTGGAA-A-GCTTAA---A-CA--AAACCCT-AGCCATGGTGGTCTTC
** * *** * ** * * ** ** ** * * *
120749813 ATAACATGGTTCAAACCCTAGACCTTCATCATAACTGAAATAAATGG-TAGAAATAGGTAGATCA
152 A-AA-AT--TTC--GGCCGAGGGGTTGAAGATGAC-CAAA-ATTTGGCT---TTTATTTTGTTTA
* ** * * * **
120749877 TGTTACAAGGATTTCAAAAACGAGAAAATCATTA-AAAAC-GGGGCAAGAACGGACTTACTATGG
206 T-TTA-AA-CATTT-AATTAC---TAAAT--TTATCATACTATGGCAA-AA---A-TTAC-AT--
* * ** * ** * * * ** * * *
120749940 AGCTTGGAAAGCTTAAATAAAACCCTAGCCATGGTGGTCTTCAAAATTT-CGGCCAAGGGGTTGA
254 --TTTTG--CCCCTAAAT-----TTTA-TCAT-AT--T-TAC-ACTTTTAC--CCTA-GGCTTGT
* * ** * * * ****** * * *
120750004 AGATGACCAAAATTTGGC-TTTTATTT-TGTTT-A-TTTAAACATTTAATTACTAAATTTTATCA
301 A-A--A--ATAATTT-TCATTCAATTTAT-TTTCACCTTAAGCCTAGCCGAAC-CACTTTCAT-A
** * *** * * * *
120750065 TACTATTGCAAAAA-TTA-AATTTTTGCCGCTAAATTTTATCATTT-T-ACACTTTTACCCTAGG
357 -ACTA-T--AAAAACCCACAA--TTT-CCACTAAATCACA-CTTTTATGAAAATTTTA---TA-A
* * * * * ** ** * ** * ** ****
120750126 CTTGTA-AAATAATTTTCATTCGATTTATTTTCACT-CTAAGC-C-TAGCCGAACCACTTTCAT-
410 CTTTTACAAATTA-GTCCTTTTTA-GCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTC-TC
* * ** * * * ** * *
120750186 -AACTATAAAAACCCACAAT-TTCCACT-AA-ATCAACCTTTATGACAAATTTTATAAC-T-TTT
472 CAACCATAAACATGCATAATCTACCATTAAACATCAA--AATA-CACAAA-TTTATAACATGGTT
*
120750245 ACAAA--T
533 -CAAACCC
* * * ** * ** *** ** *
120750251 TAGTCCTTTTTAGCAT-TTTC-ATTGAAAATCACTTAGCAAA-AGTTGTTTCTCCAACCATAAAC
1 TAGACC--TTCATCATAACTCAAAT--AAAT--GGTAG-AAATAG--GTAGAT-C-A-TGT-TAC
* * * * * ** * ** * *
120750313 ATGCATAATCTACCATTAAACATCAAAATACACAAATTATAACATGGTTAA-ACCCTAGACCTT-
53 AAGGAT--T-T--CA-AAAACGTGAAAAT-CATTAA--A-AAC-GGGGCAAGA-AC-GGA-CTTA
* * ** * * ** * *
120750376 CATCAT--AAC-TGAAATAAATGGTAGA-AATA-GGTAGATCATGTTACAAGGAT-TTCAAAA--
104 C-T-ATGGAGCTTGGAA-AGCT--TAAACAAAACCCTAG-CCATGGT----GG-TCTTCAAAATT
* ** **** * * * ** * ** *** *
120750433 ACGTG-AAAATCATTAAAAACGGGGCAAGAA--CGGACTTACTATGGAGCTTGGAAAGCTT-AAC
158 TCG-GCCGAGGGGTTGAAGA-TGACCAA-AATTTGG-CTT--T-T--ATTTTGTTTA-TTTAAAC
* * * ** * * * * * *
120750494 A--AAACCCTAGCCATGGAGGTT-TCAAACTTTAGGCCGAGGGGTTGAAGATGACCAAAATTTGG
213 ATTTAA--TTA--C-T-AAATTTATCATACTAT-GG-C-A-------AAAATTA-C--ATTTTTG
*** ** * * * * *
120750556 CTTTTATTTTGTTTATTTAAACATTTAATTACTCAATTTTATCATA--CTATGGAAAAAATTACA
259 CCCCTA-AAT-TTTA--T---CA--TATTTA--CACTTTTACCCTAGGCT-T-G-TAAAA-TA-A
** * * * * * ** *
120750619 TTTTTGCCCCTAAATTTTATCGTAATTACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTA
308 -TTTT--CATTCAA-TTTAT--T--TT-CACCTTAAGCCTA-GC-CG---AACCACTTTCA--TA
* * * * * * * * *
120750684 ATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
357 A-CTA---T-A----AA----AACC-CA-CAATTTC--CAC--T--AAA-TCACACTTT-TA-TG
* * * * * *** * * ***
120750749 AATCACACTTTTATGTGAAATTTTATAACTT-TTACAAATTAGTCCTTTT--TAGCATTTTCA-T
398 AA--A-A-TTTTA--T-AACTTTTACAAATTAGTCCTTTTTAG-CATTTTCATTG-AAAATCACT
*** ** * *** *** ** * * *
120750810 T-G-AAAA-TCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC-ATGCA-TAATCTACCATTTAA
454 TAGCAAAAGTTGTTTCTC-CAA---CCATAAACATGCATAATCTA-CCATTAA---A-CA--TC-
* *
120750870 ACATCAAAATACACAAAATTATAACATGGTTTAAACCC
507 -----AAAATACACAAATTTATAACATGGTTCAAACCC
* *
120750908 TAGACCTTCATCATAACTAAAATAAATGGTAGAAATAGGTAGGTCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
*
120750973 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAACCAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120751038 ACCCTAGCCATGGTGGTCTTCAAAATTTCGG-CGAAGGGGTTGAAGATGA-CAAAATTTTGCTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCG-AGGGGTTGAAGATGACCAAAATTTGGCTTT
*
120751101 TATTTTGTTTATTTAAACATTTAATTACTAAAGTTTATCATACTATGGCAAAAATTGCATTTTTG
195 TATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTG
* * * * *
120751166 ACCCTAAATTTTATTAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCTATTTA
259 CCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTA
* *
120751230 TTTTCACCTTAAGCCTAGCCGAACCACTTTCATGACTATAAAAACCGACAATTTCCACTAAATCA
323 TTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA
* *
120751295 CACTTTTATGACAAATTTTATAACTTTTACAGATTAGTCCTTTTTAGCATTTTTATTGAAAATCA
388 CACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
120751360 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
452 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
*
120751425 AATTTATAACATAGTTCAAACCC
517 AATTTATAACATGGTTCAAACCC
*
120751448 TAGACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
*
120751513 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTACACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* ** * *
120751578 ACCCTAGCCATGGTGGCCTTCAATCTTTCGGCCGAGGGGTTGAACATAACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120751643 ATTTTGTTTATTTAAACATTTAATTACTAAACTTTATCATACTATGCCAAAAATTACATTTTTTG
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACA-TTTTTG
* *
120751708 CCCCTAAATTTTATCAT-TTTACACTTTTGGCCCTAGGCATT-TAAAAGAATTTTCATTCAATTT
259 CCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGC-TTGTAAAATAATTTTCATTCAATTT
* *
120751771 ATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCGACAATTTCCACGAAATC
322 ATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATC
* * * *
120751836 ACACTTTTATGACAAATTTTAGAACTTTTATAAATTAGCCCTTTTTAGCATTTTAATTGAAAATC
387 ACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATC
*
120751901 ACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAT
451 ACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAC
120751966 AAATTTATAACATGGTTCAAACCC
516 AAATTTATAACATGGTTCAAACCC
* *
120751990 TAGACCTTCATCATAACTCAAATAAATGGTGGAAATAGGTAGATCATGTTACAAGTATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
*
120752055 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTCTGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* ** * *
120752120 ACCCTAGCCATGGTGGCCTTCAATGTTTCGGCCGAGGGGTTGAAAATAACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120752185 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGC-AAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
* *
120752249 CCCTAAATTTTATCAT-TTTACACTTTTGCCCCTA-GCTTGCAAAATAATTTTCATTCAATTTAT
260 CCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTAT
120752312 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
324 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
* * * *
120752377 ACTTTAATGACAAATTTCATAACTTTTACAAATTAGTCATTTTTAGCATTTTCATTGAAACTCAC
389 ACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
*
120752442 TCAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
453 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
* *
120752507 AATTATAACATGGTTTAAACCC
518 ATTTATAACATGGTTCAAACCC
120752529 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* *
120752594 ACGTGCAAATCATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120752659 ACCCTAGCCATGGTGGTCTCCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* * *
120752724 ATTTTCTTTATTTAAACATTTAATTACTAAATTTTATCATACGATGGCAAAAATTACATTTTTTC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
120752789 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120752854 TTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120752919 CTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
120752984 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
*
120753049 -TTATAACATGGTTTAAACCC
519 TTTATAACATGGTTCAAACCC
120753069 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCAT-TTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120753133 ACGTGAAAATCATTAAAAAC-GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120753197 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
120753262 A-TTT-TTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
120753325 CCCTAAATTTTATCATATTTACACTTTTACCCTA-GCTTGTAAAATAATTTTCATTCAATTTA-T
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120753388 TTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
120753453 CTTTTATGAAAAATTTATAACTTTTAC-AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
390 CTTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
120753517 AGCAAAAGTTGTTTCTCCAACCATAAA-ATGCATAATCTACCATTAAACATCAAAATACACAAAT
455 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
*
120753581 TTAT-ACATAGTTCAAACCC
520 TTATAACATGGTTCAAACCC
* *
120753600 AAGACC-TCTATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTAAAA
1 TAGACCTTC-ATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAA
* *
120753664 AACGTGAAAATCATTAAAAATGGGGTAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAA
65 AACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAA
*
120753729 AACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTT
130 AACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTT
* * *
120753794 TATTTTGTTTATTTAAACATTTCATTACTGAATTTATTCATACTATGGAAAAAATTACATTTTTG
195 TATTTTGTTTATTTAAACATTTAATTACTAAATTTA-TCATACTATGGCAAAAATTACATTTTTG
* * *
120753859 CCCCTAAATTTTATCAT-TTTACACTTTTGCCCTCAGGCTTTTAAAATAATTTTCATTTAATTTA
259 CCCCTAAATTTTATCATATTTACACTTTTACCCT-AGGCTTGTAAAATAATTTTCATTCAATTTA
* **
120753923 TTTTCACCTTAAGCCTAGCCGAACCACTTACATAACTAGGAAAACCCACAATTTCCACTAAATCA
323 TTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA
120753988 CACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
388 CACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
*
120754053 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA-CATTAAACATCAAAATA-AAA
452 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
*
120754116 AATTTATAACATGGTTCAAGCCC
517 AATTTATAACATGGTTCAAACCC
120754139 TAGACCTTCAT--TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* * * *
120754202 TCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTATAGAGCTTGG-AAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120754266 A-CCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120754329 ATTTTGTTTATTTAAACATTTAATTACTAAATTTATTCGTACTATGGCAAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAATTTA-TCATACTATGGCAAAAATTACATTTTTGC
* * *
120754394 CCCTAAATTTTATCAT-TTTACACTTTTGCCCCAGGCTTTTAAAATAATTTTCATT-AATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120754457 TTCACCTTAAGCCTAGCCGAACCACTTTCTTAAC--TAAAAACCCAC-ATTTCCACTAAATCACA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
120754519 CTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
* *
120754584 TAGCAAAAGTTGTTTCTCCAGCCATAAACATGCATAATCTACCATTAAACATCAAAATA-AAAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
120754648 TTTATAACATGGTTCAAACCC
519 TTTATAACATGGTTCAAACCC
120754669 TAGACCTTCAT--TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* * *
120754732 TCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTATGGAGCTTGGAAAGCTTAAACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
120754797 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120754862 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTATA-TTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
120754926 CCCTAAATTTTATCATA-TTACACTTTTACCCTAGGCTTGTAAAAT-ATTTTCATT-AATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
120754988 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA-A
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
120755052 CCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
120755117 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
* *
120755182 ATTATAACATGGTTTAAACCC
519 TTTATAACATGGTTCAAACCC
* *
120755203 TAGACCTTCATCATAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTAAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
120755268 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT-AACAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* * *
120755332 ACCCTAGCCATGGAGGT-TTCAAACTTTAGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* * *
120755396 ATTTTCTTTATTTAAACATTTAATTACTCAATTTTATCATACTATGGAAAAAATTACATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACT-AAATTTATCATACTATGGCAAAAATTACATTTTTGC
* * * *
120755461 CCCTAAATTTTATCATAATTACACTTTTACCATAGGCTTGTAAAATTATTTTCATTTAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120755526 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCATA
325 TTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
120755591 CTTTTATTACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
390 CTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
**
120755656 TAGCAAAAGTTGTTTCTCCGGCCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
454 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
120755721 TTTATAACATGGTTCAAACCC
519 TTTATAACATGGTTCAAACCC
*
120755742 TAGACCTTCATCATAACTGAAATAAAT-GTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* *
120755806 ACGAGAAAATCATTAAAAAC-GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
*
120755870 ACCCTAG-CATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120755934 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAGAAATTA-ATTTTTA
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAA-AAATTACATTTTTG
*
120755997 CCGCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTAT
259 CCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTAT
120756061 TTTCA-CTCTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA
324 TTTCACCT-TAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA
* *
120756125 AACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
388 CACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCA
**
120756190 CTTAGCAAAAGTTGTTTCTCCGGCCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
452 CTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACA
120756255 AATTTATAACATGGTTCAAACCC
517 AATTTATAACATGGTTCAAACCC
* *
120756278 TAGACCTTCATCATAACTGAAATAAATTGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* * *
120756343 ACGAGAAAATCATTAAAAACGGGCCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* *
120756408 ACCCTAGTCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
* *
120756473 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGC
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTTTTGC
*
120756538 CGCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
260 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATT
*
120756602 TTCA-CTCTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAA
325 TTCACCT-TAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
*
120756666 ACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
389 ACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCAC
120756731 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
453 TTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAA
* * * *
120756796 AATTATAACTTGGTTTAAATCC
518 ATTTATAACATGGTTCAAACCC
* *
120756818 TAGACCTTCATCATAACTGAAATAAATTGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
1 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
* * *
120756883 ACGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTATGGGGCTTGGAAAGCTTAACCAAA
66 ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
* * * *
120756948 ACCCTAGCCATGGAGGTTTTCAAACTTTAGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
131 ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
*
120757013 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAAATTACATTTTTG
196 ATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGG-CAAAAATTACATTTTTG
* * *
120757078 CCCCTAAATTTTATCATAATTACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTAT
259 CCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTAT
120757143 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCAC
324 TTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCAC
120757191 TGTAACACCC
Statistics
Matches: 16937, Mismatches: 2423, Indels: 2985
0.76 0.11 0.13
Matches are distributed among these distances:
494 197 0.01
495 212 0.01
496 11 0.00
497 20 0.00
498 6 0.00
499 1 0.00
500 2 0.00
501 1 0.00
502 2 0.00
506 3 0.00
507 9 0.00
508 4 0.00
509 1 0.00
510 4 0.00
511 5 0.00
512 10 0.00
513 10 0.00
514 7 0.00
515 9 0.00
516 4 0.00
517 4 0.00
518 6 0.00
519 4 0.00
520 5 0.00
521 4 0.00
522 4 0.00
523 15 0.00
524 13 0.00
525 38 0.00
526 18 0.00
527 99 0.01
528 387 0.02
529 242 0.01
530 245 0.01
531 295 0.02
532 492 0.03
533 644 0.04
534 847 0.05
535 333 0.02
536 1001 0.06
537 1507 0.09
538 1078 0.06
539 2252 0.13
540 1550 0.09
541 2065 0.12
542 626 0.04
543 25 0.00
544 10 0.00
545 22 0.00
546 26 0.00
547 24 0.00
548 31 0.00
549 12 0.00
550 32 0.00
551 43 0.00
552 31 0.00
553 34 0.00
554 20 0.00
555 14 0.00
556 14 0.00
557 23 0.00
558 34 0.00
559 39 0.00
560 28 0.00
561 11 0.00
562 13 0.00
563 19 0.00
564 11 0.00
565 18 0.00
566 25 0.00
567 36 0.00
568 24 0.00
569 11 0.00
570 19 0.00
571 24 0.00
572 38 0.00
573 19 0.00
574 27 0.00
575 18 0.00
576 20 0.00
577 16 0.00
578 31 0.00
579 37 0.00
580 28 0.00
581 27 0.00
582 40 0.00
583 24 0.00
584 8 0.00
585 7 0.00
586 9 0.00
587 16 0.00
588 9 0.00
589 12 0.00
590 4 0.00
591 2 0.00
592 9 0.00
593 14 0.00
595 18 0.00
596 9 0.00
597 5 0.00
598 25 0.00
599 31 0.00
600 14 0.00
601 18 0.00
602 8 0.00
603 10 0.00
604 25 0.00
605 20 0.00
606 13 0.00
607 19 0.00
608 26 0.00
609 12 0.00
610 29 0.00
611 17 0.00
612 16 0.00
613 22 0.00
614 26 0.00
615 16 0.00
616 21 0.00
617 20 0.00
618 36 0.00
619 19 0.00
620 17 0.00
621 18 0.00
622 28 0.00
623 32 0.00
624 25 0.00
625 27 0.00
626 8 0.00
627 18 0.00
628 22 0.00
629 25 0.00
630 30 0.00
631 15 0.00
632 17 0.00
633 17 0.00
634 30 0.00
635 30 0.00
636 37 0.00
637 13 0.00
638 16 0.00
639 11 0.00
640 12 0.00
641 34 0.00
642 31 0.00
643 15 0.00
644 18 0.00
645 15 0.00
646 6 0.00
647 26 0.00
648 27 0.00
649 32 0.00
650 34 0.00
651 21 0.00
652 17 0.00
653 24 0.00
654 24 0.00
655 29 0.00
656 30 0.00
657 27 0.00
658 39 0.00
659 25 0.00
660 18 0.00
661 14 0.00
662 10 0.00
663 10 0.00
664 7 0.00
665 4 0.00
666 10 0.00
667 15 0.00
668 7 0.00
669 11 0.00
670 14 0.00
671 10 0.00
672 8 0.00
673 6 0.00
674 6 0.00
675 2 0.00
676 8 0.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.33
Consensus pattern (539 bp):
TAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAA
ACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAA
ACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
ATTTTGTTTATTTAAACATTTAATTACTAAATTTATCATACTATGGCAAAAATTACATTTTTGCC
CCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTT
TCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC
TTTTATGAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
TATAACATGGTTCAAACCC
Found at i:120747959 original size:541 final size:540
Alignment explanation
Indices: 120746937--120757190 Score: 11199
Period size: 541 Copynumber: 18.6 Consensus size: 540
120746927 GGGGTGTTAC
* * * * *
120746937 ATCATGTTACAAGCATTTCAAAATCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTGT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* *
120747002 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCGTGGTGGTCTTCAAAATTTCGGCCAAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
**
120747067 AAGATGACCAAAATTTTACTTTTATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATTCATA
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTA-TCATA
* * * *
120747131 CTATGGCAAAAATTACATTTTTACCCCTAAATTTTATCATTTTACACTTTTGCCCCCAGGCTTTT
195 CTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTT-ACCCTAGGCTTGT
* **
120747196 AAAATAATTTTCACTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTAGGAAA
259 AAAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAA
* *
120747261 ACCCACAGTTTCCACTAAATCACACTTTTATGACAAATTTTGTAACTTTTACAAATTAGTCCTTT
324 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
*
120747326 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAGCCATAAACATGCATAATCTA
389 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
* * * **
120747391 CCATTAAACATCAAAATAAAGAAATTTATAACATGGTTCAAGCCCTAGACCTTCATTGTAACTCA
454 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
120747456 AATAAATGGTATAAATAGGTAG
519 AATAAATGGTAGAAATAGGTAG
* * *
120747478 ATCATGTTACAAGGATTTCAAAATCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
120747543 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120747608 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* * *
120747673 TATGGCAAAAATTATATATTTGCCCCTAAATTTTATCATAATTACACTTTTACCCTAGGCTTGTA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGTA
*
120747738 AAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
*
120747803 CCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
120747868 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
* ** *
120747933 CATTTAACATCAAAATACACAAATTTATAACATTATTCAAACCCTAAACCTTCATCATAACTCAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
* *
120747998 GTAAATGGTAGAAATAGGAAG
520 ATAAATGGTAGAAATAGGTAG
* * *
120748019 ATCATGTTACAAGGATTTAAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAAGGACGTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
** *
120748084 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAATCTTTCGGCCAAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
*
120748149 AAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
** * *
120748214 TATGGCAAAAATTACATTTTTGCCTTTAAATTTTATCATTTTACACTTTTGCCCCTAGGCTTTTA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTT-ACCCTAGGCTTGTA
120748279 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
120748344 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
* * *
120748409 TAGCATTTCCATTGAAAATCACTTAGGAAAAGTTGTTTCTCCAACCATAAACATGCGTAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
* * *
120748474 CATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCATCATAACTGAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
*
120748539 ATAAATGGTAGTAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
*
120748560 ATCATGTTACAAGGATTTCAAAAACGAGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* * *
120748625 GGAGCTTGGAAAGCTTAAATAAAACCCTAGCCATGGTGGTCTTTAAAATTTCGGCCAAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120748690 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* * * * *
120748755 TATGGAAAAAATTAAATTTTTACCGCTAAATTTTATCATTTTACACTTTTACCATAGGCTTGTAA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTAA
*
120748820 AATAATTTTCATTCAATTTATTTTCA-CTCTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
261 AATAATTTTCATTTAATTTATTTTCACCT-TAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
* *
120748884 CCCACAATTTCCACTAAATCAAACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
*
120748949 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACTATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
* * * * *
120749014 CATTAAATACCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCATCATAACTGAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
120749079 ATAAATGGTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
120749100 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* * * * *
120749165 GGAGCTTGGAAAGCTTAACCAAAACCCTAGCCATGGAGGTTTTCAAACTTTAGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
* * * ** **** ** ** * * *
120749230 AA-AT-A-CATAATCT-ACCATTA-AACATCAAAATACACA--AAATTA-TAACATGGTTTA-AA
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAA-AT--TTTATCA
** * **** *** *** ** ** ** * * *
120749286 CCCTA-GACCTTCA-T-CATAACT-CAAATAAATGGTAGAAATAGGTAGATCATGTTA--CAAGG
193 TACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTA-TCAT-TTTACA-C-TTTTACCCTAGG
* * ** * *** *** ** * * *** *
120749345 ATTTTAAAAACGTGAA-AATCATTAAAAACA-GGGCA--AGAACGGACTTA--CTATGGAGCTTG
254 CTTGT-AAAA--T-AATTTTCATTTAATTTATTTTCACCTTAA--G-CCTAGCCGAACCA-CTTT
* * * * * * **
120749404 GA-AAGCATAAACAAAACCCTAGCCATGGTGGTCTC-CAAAATTTCGGCCGAGGGGTTGAAGATG
311 CATAA-C-TATA-AAAACCC-A-CAAT--T--TC-CACTAAA--TC--AC-A---CTT--TTATG
* ** * * * * *
120749467 ACCAAA-ATT-TGGCTTTT---ATTTTGT--TTATTTAAACA-TTTAATTACTAAACTTTATCAT
356 A-CAAATTTTATAACTTTTACAAATTAGTCCTT-TTT-AGCATTTTCATT--GAAA----ATC--
* * * * * * *
120749524 ACTATGGAAAAAAATTACATTTTTGCC--CC-TAAATTTTAT-CATAAT-TACACTTTTACCCTA
410 ACT-TAG-CAAAAGTT--GTTTCT-CCAACCATAAA---CATGCATAATCTAC-C-ATTA----A
* * * ** ** ** *
120749584 GGCTTGTAAAATTATTTTCATTTAATTTATTTTCA-CCTT--AAGCCTAGCCGAACCACTT--TC
461 -ACAT-CAAAA-TA----CA-CAAATTTA-TAACATGGTTCAAACCCTA---G-A-C-CTTCATC
* * *** * **
120749644 ATAACTATAAAAACCCACAATTCCCACTAAATCACACTTTTATG
511 ATAAC--T-CAAA--TA-AA-TGGTA-GAAAT---A--GGTA-G
* * ** * * *** ***
120749688 A-CAAATTTTATAA-CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAA
1 ATC--ATGTTACAAGGATTT-CAAA--A--AC---GT-G-AAAATCATT-AAAA--ACGGGGCAA
*** * ** * * * * * ** *******
120749751 -AA-GTTGTTTCTCCGG-CCCT-AAACATGCATAATCTACCATTAAA-CATCA-AAATACACAAA
51 GAACGGACTTACTATGGAGCTTGGAA-A-GCTTAA---A-CA--AAACCCT-AGCCATGGTGGTC
* ** * *** * ** * * ** ** ** * *
120749810 TTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTGAAATAAATGG-TAGAAATAGGTAGA
107 TTCA-AA-AT--TTC--GGCCGAGGGGTTGAAGATGAC-CAAA-ATTTGGCT---TTTATTTTGT
* * ** * * * * **
120749874 TCATGTTACAAGGATTTCAAAAACGAGAAAATCATTA-AAAAC-GGGGCAAGAACGGACTTACTA
161 TTAT-TTA-AA-CATTT-AATTAC---TAAAT-TTTATCATACTATGGCAA-AA---A-TTAC-A
* * ** * ** * * ** * *
120749937 TGGAGCTTGGAAAGCTTAAATAAAACCCTAGCCATGGTGGTCTTCAAAATTT-CGGCCAAGGGGT
212 T----TTTTG--CCCCTAAAT-----TTTA-TCAT--T--T-TAC-ACTTTTAC--CCTA-GGCT
* * * * * * * ****** * * *
120750001 TGAAGATGACCAAAATTTGGC-TTTTATTT-TGTTT-A-TTTAAACATTTAATTACTAAATTTTA
256 TGTA-A--A--ATAATTT-TCATTTAATTTAT-TTTCACCTTAAGCCTAGCCGAAC-CACTTTCA
** * *** * *
120750062 TCATACTATTGCAAAAA-TTA-AATTTTTGCCGCTAAATTTTATCATTT-T-AC-ACTTTTACCC
313 T-A-ACTA-T--AAAAACCCACAA--TTT-CCACTAAATCACA-CTTTTATGACAAATTTTA---
* * * * * * ** ** * ** * ** ****
120750122 TAGGCTTGTA-AAATAATTTTCATTCGATTTATTTTCACT-CTAAGC-C-TAGCCGAACCACTTT
366 TA-ACTTTTACAAATTA-GTCCTTTTTA-GCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
* * ** * * * ** *
120750183 CAT--AACTATAAAAACCCACAAT-TTCCACT-AA-ATCAACCTTTATGACAAATTTTATAAC-T
428 C-TCCAACCATAAACATGCATAATCTACCATTAAACATCAA--AATA-CACAAA-TTTATAACAT
* * * * * ** * ** **
120750242 -TTTACAAA--TTAGTCCTTTTTAGCAT-TTTC-ATTGAAAATCACTTAGCAAA-AGTTGTTT
488 GGTT-CAAACCCTAGACC--TTCATCATAACTCAAAT--AAAT--GGTAG-AAATAG--GTAG
* ** * * * * * * ** * **
120750299 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTATAACATGGTTAA
1 AT-C-A-TGT-TACAAGGAT--T-T--CA-AAAACGTGAAAAT-CATTAA--A-AAC-GGGGCAA
* * * * ** * * ** * *
120750364 -ACCCTAGACCTT-CATCAT--AAC-TGAAATAAATGGTAGA-AATA-GGTAGATCATGTTACAA
51 GA-AC-GGA-CTTAC-T-ATGGAGCTTGGAA-AGCT--TAAACAAAACCCTAG-CCATGGT----
* ** **** * * * ** * **
120750422 GGAT-TTCAAAA--ACGTG-AAAATCATTAAAAACGGGGCAAGAA--CGGACTTACTATGGAGCT
103 GG-TCTTCAAAATTTCG-GCCGAGGGGTTGAAGA-TGACCAA-AATTTGG-CTT--T-T--ATTT
*** * * * ** ** * * *
120750481 TGGAAAGCTT-AACA--AAACCCTAGCCATGGAGGTT-TCAAACTTTAGGCCGAGGGGTTGAAGA
158 TGTTTA-TTTAAACATTTAA--TTA--C-TAAATTTTATCATACTAT-GG-C-A-------AAAA
* * * *** ** * * *
120750542 TGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTCAATTTTATCATA--CTA
207 TTA-C--ATTTTTGCCCCTA-AAT-TTTA--T---CA-TT--TTA--CACTTTTACCCTAGGCT-
* ** * * * * *
120750605 TGGAAAAAATTACATTTTTGCCCCTAAATTTTATCGTAATTACACTTTTACCCTAGGCTTGTAAA
256 T-G-TAAAA-TA-A-TTTT--CATTTAA-TTTAT--T--TT-CACCTTAAGCCTA-GC-CG---A
** * * * * * * *
120750670 ATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACC
303 ACCACTTTCA--TAA-CTA---T-A----AA----AACC-CA-CAATTTC--CAC--T--AAA-T
* * * * * * * * * *
120750735 CACAATTTCCACTAAATCACACTTTTATGTGAAATTTTATAACTT-TTACAAATTAGTCCTTTTT
344 CACACTTT-TA-T-GA-CA-AATTTTA--T-AACTTTTACAAATTAGT-C---CT--T--TTTA-
120750799 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
392 -GCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
* * *
120750864 ATTTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCATCATAACTAAA
456 A-TTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
120750929 ATAAATGGTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
*
120750950 GTCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
*
120751015 GGAGCTTGGAAAGCTTAACCAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGG-CGAAGGGGTT
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCG-AGGGGTT
* *
120751079 GAAGATGA-CAAAATTTTGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAAGTTTATCATA
130 GAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATA
* * * * *
120751143 CTATGGCAAAAATTGCATTTTTGACCCTAAATTTTATTATTTTACACTTTTGCCCCTAGGCTTTT
195 CTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTT-ACCCTAGGCTTGT
*
120751208 AAAATAATTTTCATTCT-ATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATGACTATAAA
259 AAAATAATTTTCATT-TAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
* *
120751272 AACCGACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAGATTAGTCCTT
323 AACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTT
*
120751337 TTTAGCATTTTTATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCT
388 TTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCT
* *
120751402 ACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTCCATCATAACTC
453 ACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTC
120751467 AAATAAATGGTAGAAATAGGTAG
518 AAATAAATGGTAGAAATAGGTAG
120751490 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* * **
120751555 GGAGCTTGGAAAGCTTACACAAAACCCTAGCCATGGTGGCCTTCAATCTTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
* * *
120751620 AACATAACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAACTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* *
120751685 TATGCCAAAAATTACATTTTTTGCCCCTAAATTTTATCATTTTACACTTTTGGCCCTAGGCATT-
196 TATGGCAAAAATTACA-TTTTTGCCCCTAAATTTTATCATTTTACACTTTT-ACCCTAGGC-TTG
* *
120751749 TAAAAGAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
258 TAAAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
* * * * *
120751814 AACCGACAATTTCCACGAAATCACACTTTTATGACAAATTTTAGAACTTTTATAAATTAGCCCTT
323 AACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTT
*
120751879 TTTAGCATTTTAATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCT
388 TTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCT
*
120751944 ACCATTAAACATCAAAATACATAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTC
453 ACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTC
*
120752009 AAATAAATGGTGGAAATAGGTAG
518 AAATAAATGGTAGAAATAGGTAG
* *
120752032 ATCATGTTACAAGTATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTCT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* **
120752097 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGCCTTCAATGTTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
* *
120752162 AAAATAACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* *
120752227 TATGGC-AAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTGCCCCTA-GCTTGCA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTT-ACCCTAGGCTTGTA
*
120752290 AAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
* * *
120752355 CCCACAATTTCCACTAAATCACACTTTAATGACAAATTTCATAACTTTTACAAATTAGTCATTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
* *
120752420 TAGCATTTTCATTGAAACTCACTCAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
* *
120752485 CATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCATCATAACTCAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
120752550 ATAAATGGTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
* *
120752571 ATCATGTTACAAGGATTTCAAAAACGTGCAAATCATTAAAAACAGGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
*
120752636 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTCCAAAATTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
*
120752701 AAGATGACCAAAATTTGGCTTTTATTTTCTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* *
120752766 GATGGCAAAAATTACATTTTTTCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGTA
* *
120752831 AAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
120752896 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
120752961 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
*
120753026 CATTAAACATCAAAATACACAAA-TTATAACATGGTTTAAACCCTAGACCTTCATCATAACTCAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
120753090 ATAAATGGTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
120753111 ATCAT-TTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC-GGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
120753174 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120753239 AAGATGACCAAAATTTGGCTTTTA-TTT-TTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
120753302 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTA-GCTTGTA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGTA
* *
120753366 AAATAATTTTCATTCAATTTA-TTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
*
120753430 CCCACAATTTCCACTAAATCACACTTTTATGA-AAAATTTATAACTTTTAC-AATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
120753493 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA-ATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
* *
120753557 CATTAAACATCAAAATACACAAATTTAT-ACATAGTTCAAACCCAAGACC-TCTATCATAACTCA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTC-ATCATAACTCA
120753620 AATAAATGGTAGAAATAGGTAG
519 AATAAATGGTAGAAATAGGTAG
* * *
120753642 ATCATGTTACAAGGATTTAAAAAACGTGAAAATCATTAAAAATGGGGTAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
120753707 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
* * *
120753772 AAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACATTTCATTACTGAA-TTTATTCATA
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTA-TCATA
* * *
120753836 CTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTGCCCTCAGGCTTTT
195 CTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCT-AGGCTTGT
* **
120753901 AAAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTACATAACTAGGAAA
259 AAAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAA
120753966 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
324 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
120754031 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
389 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
* *
120754096 -CATTAAACATCAAAATA-AAAAATTTATAACATGGTTCAAGCCCTAGACCTTCAT--TAACTCA
454 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
120754157 AATAAATGGTAGAAATAGGTAG
519 AATAAATGGTAGAAATAGGTAG
* * *
120754179 ATCATGTTACAAGGATTTCAAAATCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* *
120754244 AGAGCTTGG-AAGCTTAAACAAAA-CCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
*
120754307 AAGATGACCAAAATTT-GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATTCGTA
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTA-TCATA
* * *
120754370 CTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTGCCCCAGGCTTTTA
195 CTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTA
*
120754435 AAATAATTTTCA-TTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCTTAAC--TAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
120754497 CCCAC-ATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
*
120754561 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAGCCATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
*
120754626 CATTAAACATCAAAATA-AAAAATTTATAACATGGTTCAAACCCTAGACCTTCAT--TAACTCAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
120754688 ATAAATGGTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
* * *
120754709 ATCATGTTACAAGGATTTCAAAATCGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTATTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
120754774 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120754839 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* *
120754904 TATGGCAAAAATTATA-TTTTGCCCCTAAATTTTATCATATTACACTTTTACCCTAGGCTTGTAA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTAA
120754968 AAT-ATTTTCA-TTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAAC
261 AATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAAC
*
120755031 CCACAATTTCCACTAAATCA-ACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTT
326 CCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTT
120755095 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
391 AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
* * *
120755160 ATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCATCATAACTGAAA
456 ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
120755225 TAAATGGTAGAAATAGGTAG
521 TAAATGGTAGAAATAGGTAG
*
120755245 ATCATGTTACAAGGATTTAAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* * *
120755310 GGAGCTTGGAAAGCTT-AACAAAACCCTAGCCATGGAGGT-TTCAAACTTTAGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
* *
120755373 AAGATGACCAAAATTTGGCTTTTATTTTCTTTATTTAAACATTTAATTACTCAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* * *
120755438 TATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATAATTACACTTTTACCATAGGCTTGTA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGTA
*
120755503 AAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
* *
120755568 CCCACAATTTCCACTAAATCATACTTTTATTACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
**
120755633 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCGGCCATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
*
120755698 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTGAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
120755763 ATAAAT-GTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
*
120755783 ATCATGTTACAAGGATTTCAAAAACGAGAAAATCATTAAAAAC-GGGCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* *
120755847 GGAGCTTGGAAAGCTTAAATAAAACCCTAG-CATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120755911 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* *
120755976 TATGG-AAGAAATTA-ATTTTTACCGCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTA
196 TATGGCAA-AAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTA
*
120756039 AAATAATTTTCATTCAATTTATTTTCA-CTCTAAGCCTAGCCGAACCACTTTCATAACTATAAAA
260 AAATAATTTTCATTTAATTTATTTTCACCT-TAAGCCTAGCCGAACCACTTTCATAACTATAAAA
* *
120756103 ACCCACAATTTCCACTAAATCAAACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
324 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
**
120756168 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCGGCCATAAACATGCATAATCTA
389 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
*
120756233 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTGA
454 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
120756298 AATAAATTGTAGAAATAGGTAG
519 AATAAATGGTAGAAATAGGTAG
* *
120756320 ATCATGTTACAAGGATTTCAAAAACGAGAAAATCATTAAAAACGGGCCAAGAACGGACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* * *
120756385 GGAGCTTGGAAAGCTTAAATAAAACCCTAGTCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120756450 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* * *
120756515 TATGGAAAAAATTAAATTTTTGCCGCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTAA
196 TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTAA
*
120756580 AATAATTTTCATTCAATTTATTTTCA-CTCTAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
261 AATAATTTTCATTTAATTTATTTTCACCT-TAAGCCTAGCCGAACCACTTTCATAACTATAAAAA
* *
120756644 CCCACAATTTCCACTAAATCAAACCTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
325 CCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTT
120756709 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
390 TAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTAC
* * * * *
120756774 CATTAAACATCAAAATACACAAAATTATAACTTGGTTTAAATCCTAGACCTTCATCATAACTGAA
455 CATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAA
*
120756839 ATAAATTGTAGAAATAGGTAG
520 ATAAATGGTAGAAATAGGTAG
*
120756860 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTAT
1 ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
* * * * * *
120756925 GGGGCTTGGAAAGCTTAACCAAAACCCTAGCCATGGAGGTTTTCAAACTTTAGGCCGAGGGGTTG
66 GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
120756990 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
131 AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
* *
120757055 TATGGAAAAAAATTACATTTTTGCCCCTAAATTTTATCATAATTACACTTTTACCCTAGGCTTGT
196 TATGG-CAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTGT
*
120757120 AAAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAA
259 AAAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAA
120757185 ACCCAC
324 ACCCAC
120757191 TGTAACACCC
Statistics
Matches: 8360, Mismatches: 895, Indels: 915
0.82 0.09 0.09
Matches are distributed among these distances:
529 122 0.01
530 174 0.02
531 161 0.02
532 262 0.03
533 356 0.04
534 363 0.04
535 223 0.03
536 558 0.07
537 310 0.04
538 426 0.05
539 881 0.11
540 1288 0.15
541 1626 0.19
542 613 0.07
543 8 0.00
544 2 0.00
545 1 0.00
546 2 0.00
547 11 0.00
548 8 0.00
549 3 0.00
550 12 0.00
551 8 0.00
552 6 0.00
553 13 0.00
554 2 0.00
555 4 0.00
556 3 0.00
557 11 0.00
558 11 0.00
559 14 0.00
560 7 0.00
561 1 0.00
563 2 0.00
564 1 0.00
565 6 0.00
566 5 0.00
567 5 0.00
570 6 0.00
571 4 0.00
572 7 0.00
573 4 0.00
574 8 0.00
575 2 0.00
576 5 0.00
577 3 0.00
579 3 0.00
580 4 0.00
581 2 0.00
582 12 0.00
585 2 0.00
586 2 0.00
587 13 0.00
588 7 0.00
589 11 0.00
590 1 0.00
591 1 0.00
592 5 0.00
593 4 0.00
595 4 0.00
596 2 0.00
597 5 0.00
598 19 0.00
599 19 0.00
600 6 0.00
601 9 0.00
602 3 0.00
603 6 0.00
604 16 0.00
605 15 0.00
606 13 0.00
607 16 0.00
608 26 0.00
609 10 0.00
610 23 0.00
611 13 0.00
612 14 0.00
613 15 0.00
614 13 0.00
615 10 0.00
616 14 0.00
617 10 0.00
618 15 0.00
619 9 0.00
620 8 0.00
621 7 0.00
622 10 0.00
623 14 0.00
624 10 0.00
625 16 0.00
626 2 0.00
627 14 0.00
628 4 0.00
629 7 0.00
630 19 0.00
631 5 0.00
632 9 0.00
633 6 0.00
634 14 0.00
635 19 0.00
636 17 0.00
637 8 0.00
638 7 0.00
639 2 0.00
640 7 0.00
641 14 0.00
642 16 0.00
643 12 0.00
644 2 0.00
645 3 0.00
646 1 0.00
647 18 0.00
648 1 0.00
649 6 0.00
650 13 0.00
651 9 0.00
652 13 0.00
653 21 0.00
654 33 0.00
655 27 0.00
656 15 0.00
657 17 0.00
658 8 0.00
659 5 0.00
660 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (540 bp):
ATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT
GGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTG
AAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATAC
TATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATTTTACACTTTTACCCTAGGCTTGTAA
AATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAAC
CCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTT
AGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACC
ATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAA
TAAATGGTAGAAATAGGTAG
Found at i:120749407 original size:231 final size:231
Alignment explanation
Indices: 120749004--120749462 Score: 810
Period size: 231 Copynumber: 2.0 Consensus size: 231
120748994 TATAAACATG
*
120749004 CATAATCTACCATTAAATACCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACACCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
*
120749069 CATAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
* * *
120749134 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAACCAAAACCCTAGCCAT
131 ATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCATAAACAAAACCCTAGCCAT
* * *
120749199 GGAGGTTTTCAAACTTTAGGCCGAGGGGTTGAAATA
196 GGAGGTCTCCAAAATTTAGGCCGAGGGGTTGAAATA
*
120749235 CATAATCTACCATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACACCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
*
120749300 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTTAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
120749365 ATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCATAAACAAAACCCTAGCCAT
131 ATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCATAAACAAAACCCTAGCCAT
* *
120749430 GGTGGTCTCCAAAATTTCGGCCGAGGGGTTGAA
196 GGAGGTCTCCAAAATTTAGGCCGAGGGGTTGAA
120749463 GATGACCAAA
Statistics
Matches: 216, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
231 216 1.00
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (231 bp):
CATAATCTACCATTAAACACCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
ATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCATAAACAAAACCCTAGCCAT
GGAGGTCTCCAAAATTTAGGCCGAGGGGTTGAAATA
Found at i:120751920 original size:542 final size:540
Alignment explanation
Indices: 120749235--120757190 Score: 13622
Period size: 540 Copynumber: 14.8 Consensus size: 540
120749225 GGTTGAAATA
* *
120749235 CATAATCTACCATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
*
120749300 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTTAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
* *
120749365 ATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCATAAACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
*
120749430 GGTGGTCTCCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* *
120749495 TTAAACATTTAATTACTAAACTTTATCATACTATGGAAAAAAATTACATTTTTGCCCCTAAATTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGG-CAAAAATTACATTTTTGCCCCTAAATTT
* * *
120749560 TATCATAATTACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAA
325 TATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAA
*
120749625 GCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTCCCACTAAATCACACTTTTATGAC
389 GCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAC
120749690 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
454 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
** *
120749755 TGTTTCTCCGGCCCTAAACATG
519 TGTTTCTCCAACCATAAACATG
120749777 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
* *
120749842 CATAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGAGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
*
120749907 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
*
120749972 GGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* * *
120750037 TTAAACATTTAATTACTAAATTTTATCATACTATTGCAAAAATTAAATTTTTGCCGCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
*
120750102 ATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCGATTTATTTTCA-CTCTAAG
326 ATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCT-TAAG
*
120750166 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA-ACCTTTATGACA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
120750230 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
120750295 GTTTCTCCAACCATAAACATG
520 GTTTCTCCAACCATAAACATG
120750316 CATAATCTACCATTAAACATCAAAATACACAAA-TTATAACATGGTT-AAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
*
120750379 CATAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
120750444 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT-AACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
* * *
120750508 GGAGGT-TTCAAACTTTAGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* *
120750572 TTAAACATTTAATTACTCAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
* * * *
120750637 ATCGTAATTACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAG
326 ATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
**
120750702 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGTGA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
120750767 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
120750832 GTTTCTCCAACCATAAACATG
520 GTTTCTCCAACCATAAACATG
* *
120750853 CATAATCTACCATTTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCA
1 CATAATCTACCA-TTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCA
* *
120750918 TCATAACTAAAATAAATGGTAGAAATAGGTAGGTCATGTTACAAGGATTTCAAAAACGTGAAAAT
65 TCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAAT
*
120750983 CATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAACCAAAACCCTAGCCA
130 CATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCA
*
120751048 TGGTGGTCTTCAAAATTTCGG-CGAAGGGGTTGAAGATGA-CAAAATTTTGCTTTTATTTTGTTT
195 TGGTGGTCTTCAAAATTTCGGCCG-AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
* * *
120751111 ATTTAAACATTTAATTACTAAAGTTTATCATACTATGGCAAAAATTGCATTTTTGACCCTAAATT
259 ATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATT
* * * *
120751176 TTATTATTTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCTATTTATTTTCACCTTA
324 TTATCATTTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTA
* *
120751241 AGCCTAGCCGAACCACTTTCATGACTATAAAAACCGACAATTTCCACTAAATCACACTTTTATGA
388 AGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA
* *
120751306 CAAATTTTATAACTTTTACAGATTAGTCCTTTTTAGCATTTTTATTGAAAATCACTTAGCAAAAG
453 CAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
120751371 TTGTTTCTCCAACCATAAACATG
518 TTGTTTCTCCAACCATAAACATG
* *
120751394 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTCCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
120751459 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
*
120751524 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTACACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
* ** * *
120751589 GGTGGCCTTCAATCTTTCGGCCGAGGGGTTGAACATAACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* *
120751654 TTAAACATTTAATTACTAAACTTTATCATACTATGCCAAAAATTACATTTTTTGCCCCTAAATTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA-TTTTTGCCCCTAAATTT
* *
120751719 TATCATTTTACACTTTTGGCCCTAGGCATT-TAAAAGAATTTTCATTCAATTTATTTTCACCTTA
325 TATCATTTTACACTTTT-ACCCTAGGC-TTGTAAAATAATTTTCATTCAATTTATTTTCACCTTA
* *
120751783 AGCCTAGCCGAACCACTTTCATAACTATAAAAACCGACAATTTCCACGAAATCACACTTTTATGA
388 AGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA
* * * *
120751848 CAAATTTTAGAACTTTTATAAATTAGCCCTTTTTAGCATTTTAATTGAAAATCACTTAGCAAAAG
453 CAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
120751913 TTGTTTCTCCAACCATAAACATG
518 TTGTTTCTCCAACCATAAACATG
*
120751936 CATAATCTACCATTAAACATCAAAATACATAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
* *
120752001 CATAACTCAAATAAATGGTGGAAATAGGTAGATCATGTTACAAGTATTTCAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
*
120752066 ATTAAAAACGGGGCAAGAACGGACTTACTCTGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
* ** * *
120752131 GGTGGCCTTCAATGTTTCGGCCGAGGGGTTGAAAATAACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
120752196 TTAAACATTTAATTACTAAATTTTATCATACTATGGC-AAAATTACATTTTTGCCCCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
* *
120752260 ATCATTTTACACTTTTGCCCCTA-GCTTGCAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
326 ATCATTTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
*
120752324 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTAATGACA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
* * * *
120752389 AATTTCATAACTTTTACAAATTAGTCATTTTTAGCATTTTCATTGAAACTCACTCAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
120752454 GTTTCTCCAACCATAAACATG
520 GTTTCTCCAACCATAAACATG
* *
120752475 CATAATCTACCATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
*
120752540 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGCAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
*
120752605 ATTAAAAACAGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
* *
120752670 GGTGGTCTCCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTCTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* *
120752735 TTAAACATTTAATTACTAAATTTTATCATACGATGGCAAAAATTACATTTTTTCCCCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
*
120752800 ATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAG
326 ATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
120752865 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
120752930 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
120752995 GTTTCTCCAACCATAAACATG
520 GTTTCTCCAACCATAAACATG
*
120753016 CATAATCTACCATTAAACATCAAAATACACAAA-TTATAACATGGTTTAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
120753080 CATAACTCAAATAAATGGTAGAAATAGGTAGATCAT-TTACAAGGATTTCAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
120753144 ATTAAAAAC-GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
120753208 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTA-TTT-TTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
120753271 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
*
120753336 ATCATATTTACACTTTTACCCTA-GCTTGTAAAATAATTTTCATTCAATTTA-TTTCACTTTAAG
326 ATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
120753399 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-A
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
*
120753463 AAATTTATAACTTTTAC-AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
120753527 GTTTCTCCAACCATAAA-ATG
520 GTTTCTCCAACCATAAACATG
* *
120753547 CATAATCTACCATTAAACATCAAAATACACAAATTTAT-ACATAGTTCAAACCCAAGACC-TCTA
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTC-A
*
120753610 TCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTAAAAAACGTGAAAAT
65 TCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAAT
* *
120753675 CATTAAAAATGGGGTAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCA
130 CATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCA
*
120753740 TGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTA
195 TGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTA
* * *
120753805 TTTAAACATTTCATTACTGAA-TTTATTCATACTATGGAAAAAATTACATTTTTGCCCCTAAATT
260 TTTAAACATTTAATTACTAAATTTTA-TCATACTATGGCAAAAATTACATTTTTGCCCCTAAATT
* * *
120753869 TTATCATTTTACACTTTTGCCCTCAGGCTTTTAAAATAATTTTCATTTAATTTATTTTCACCTTA
324 TTATCATTTTACACTTTTACCCT-AGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTA
* **
120753934 AGCCTAGCCGAACCACTTACATAACTAGGAAAACCCACAATTTCCACTAAATCACACTTTTATGA
388 AGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA
120753999 CAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
453 CAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
120754064 TTGTTTCTCCAACCATAAACATG
518 TTGTTTCTCCAACCATAAACATG
* *
120754087 CATAATCTA-CATTAAACATCAAAATA-AAAAATTTATAACATGGTTCAAGCCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
*
120754150 --TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAATCGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
* * *
120754213 ATTAAAAACGGGGCAAGAACAGACTTATTATAGAGCTTGG-AAGCTTAAACAAAA-CCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
*
120754276 GGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
*
120754340 TTAAACATTTAATTACTAAA-TTTATTCGTACTATGGCAAAAATTACATTTTTGCCCCTAAATTT
261 TTAAACATTTAATTACTAAATTTTA-TCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTT
* * *
120754404 TATCATTTTACACTTTTGCCCCAGGCTTTTAAAATAATTTTCATT-AATTTATTTTCACCTTAAG
325 TATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
*
120754468 CCTAGCCGAACCACTTTCTTAAC--TAAAAACCCAC-ATTTCCACTAAATCACACTTTTATGACA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
120754530 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
*
120754595 GTTTCTCCAGCCATAAACATG
520 GTTTCTCCAACCATAAACATG
*
120754616 CATAATCTACCATTAAACATCAAAATA-AAAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
*
120754680 --TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAATCGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
* *
120754743 ATTAAAAACGGGGCAAGAACAGACTTATTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
120754808 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
*
120754873 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTATA-TTTTGCCCCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
*
120754937 ATCATATTACACTTTTACCCTAGGCTTGTAAAAT-ATTTTCATT-AATTTATTTTCACCTTAAGC
326 ATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGC
*
120755000 CTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCA-ACCTTTATGACAA
391 CTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAA
120755064 ATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTG
456 ATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTG
120755129 TTTCTCCAACCATAAACATG
521 TTTCTCCAACCATAAACATG
* *
120755149 CATAATCTACCATTAAACATCAAAATACACAAAATTATAACATGGTTTAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
* *
120755214 CATAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTAAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
120755279 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT-AACAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
* * * *
120755343 GGAGGT-TTCAAACTTTAGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTCTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* *
120755407 TTAAACATTTAATTACTCAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
* * * *
120755472 ATCATAATTACACTTTTACCATAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAG
326 ATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAG
* *
120755537 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCATACTTTTATTACA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
120755602 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
**
120755667 GTTTCTCCGGCCATAAACATG
520 GTTTCTCCAACCATAAACATG
120755688 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
* *
120755753 CATAACTGAAATAAAT-GTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGAGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
*
120755817 ATTAAAAAC-GGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAAACCCTAG-CAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
*
120755880 GGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* *
120755945 TTAAACATTTAATTACTAAATTTTATCATACTATGG-AAGAAATTA-ATTTTTACCGCTAAATTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAA-AAATTACATTTTTGCCCCTAAATTT
120756008 TATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA-CTCTAA
325 TATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCT-TAA
* *
120756072 GCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAAACCTTTATGAC
389 GCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAC
120756137 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
454 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
**
120756202 TGTTTCTCCGGCCATAAACATG
519 TGTTTCTCCAACCATAAACATG
120756224 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
* * *
120756289 CATAACTGAAATAAATTGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGAGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
* * *
120756354 ATTAAAAACGGGCCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAAACCCTAGTCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
*
120756419 GGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
* * *
120756484 TTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCGCTAAATTTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
120756549 ATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA-CTCTAAG
326 ATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCT-TAAG
* *
120756613 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAAACCTTTATGACA
390 CCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACA
120756678 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
455 AATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTT
120756743 GTTTCTCCAACCATAAACATG
520 GTTTCTCCAACCATAAACATG
* * * *
120756764 CATAATCTACCATTAAACATCAAAATACACAAAATTATAACTTGGTTTAAATCCTAGACCTTCAT
1 CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
* *
120756829 CATAACTGAAATAAATTGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
66 CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
* * *
120756894 ATTAAAAACGGGGCAAGAACGAACTTACTATGGGGCTTGGAAAGCTTAACCAAAACCCTAGCCAT
131 ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
* * * *
120756959 GGAGGTTTTCAAACTTTAGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
196 GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
*
120757024 TTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAAATTACATTTTTGCCCCTAAATTT
261 TTAAACATTTAATTACTAAATTTTATCATACTATGG-CAAAAATTACATTTTTGCCCCTAAATTT
* * *
120757089 TATCATAATTACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAA
325 TATCAT-TTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAA
120757154 GCCTAGCCGAACCACTTTCATAACTATAAAAACCCAC
389 GCCTAGCCGAACCACTTTCATAACTATAAAAACCCAC
120757191 TGTAACACCC
Statistics
Matches: 7082, Mismatches: 270, Indels: 124
0.95 0.04 0.02
Matches are distributed among these distances:
529 122 0.02
530 166 0.02
531 156 0.02
532 245 0.03
533 339 0.05
534 347 0.05
535 316 0.04
536 670 0.09
537 542 0.08
538 454 0.06
539 1019 0.14
540 1115 0.16
541 683 0.10
542 904 0.13
543 4 0.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (540 bp):
CATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCAT
CATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATC
ATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT
GGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTAT
TTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTT
ATCATTTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGC
CTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAA
ATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTG
TTTCTCCAACCATAAACATG
Found at i:120758213 original size:24 final size:24
Alignment explanation
Indices: 120758162--120758350 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
120758152 GCTTTATCAT
*
120758162 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
120758187 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
120758211 ATAACTGGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
120758234 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
120758257 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
120758281 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
120758305 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
120758328 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
120758351 GCACTTCCTC
Statistics
Matches: 154, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 67 0.44
24 75 0.49
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:120758237 original size:23 final size:23
Alignment explanation
Indices: 120758183--120758349 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
120758173 CCTAGCCTCT
*
120758183 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
120758206 TTTTAATAACTGGGGCATGAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
120758230 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
120758253 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
120758276 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
120758300 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
120758324 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
120758347 TTT
1 TTT
120758350 TGCACTTCCT
Statistics
Matches: 137, Mismatches: 5, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
23 70 0.51
24 67 0.49
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:120758351 original size:47 final size:47
Alignment explanation
Indices: 120758183--120758350 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
120758173 CCTAGCCTCT
* *
120758183 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
120758230 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
120758276 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
120758324 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
120758351 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 22 0.19
47 70 0.61
48 22 0.19
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:120758422 original size:9 final size:9
Alignment explanation
Indices: 120758408--120758464 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
120758398 ATCTCATGTG
120758408 CATATCATA
1 CATATCATA
*
120758417 CATATCATGTG
1 CATATCA--TA
120758428 CATATCATA
1 CATATCATA
* *
120758437 CATGTCATGTG
1 CATATCA--TA
120758448 CATATCATA
1 CATATCATA
120758457 CATATCAT
1 CATATCAT
120758465 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:120758424 original size:20 final size:20
Alignment explanation
Indices: 120758396--120758466 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
120758386 GCATTTATGA
*
120758396 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
120758416 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
120758436 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
120758456 ACATATCATGT
1 ACATATCATGT
120758467 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:120758431 original size:11 final size:11
Alignment explanation
Indices: 120758401--120758455 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
120758391 TATGAACATC
120758401 TCATGTGCATA
1 TCATGTGCATA
*
120758412 TCA--TACATA
1 TCATGTGCATA
120758421 TCATGTGCATA
1 TCATGTGCATA
* *
120758432 TCA--TACATG
1 TCATGTGCATA
120758441 TCATGTGCATA
1 TCATGTGCATA
120758452 TCAT
1 TCAT
120758456 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:120766322 original size:24 final size:24
Alignment explanation
Indices: 120766271--120766482 Score: 317
Period size: 24 Copynumber: 9.0 Consensus size: 24
120766261 GCTTTATCAT
*
120766271 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
120766296 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
120766320 ATAACTGGGGCATGAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
120766343 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
120766366 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
120766390 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
120766414 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
120766438 ATAACTGGGGCATAAG-CC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
120766460 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
120766483 GCACTTCCTC
Statistics
Matches: 176, Mismatches: 7, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
22 19 0.11
23 49 0.28
24 96 0.55
25 12 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:120766386 original size:70 final size:71
Alignment explanation
Indices: 120766271--120766481 Score: 313
Period size: 70 Copynumber: 3.0 Consensus size: 71
120766261 GCTTTATCAT
* * *
120766271 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAA
120766335 GCCCTTTA
64 GCCCTTTA
*
120766343 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
*
120766407 CCTTTTG
66 CC-TTTA
*
120766414 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG-CC-TTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
120766477 CCTTT
66 CCTTT
120766482 TGCACTTCCT
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
69 3 0.02
70 66 0.51
71 29 0.22
72 31 0.24
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTA
Found at i:120766458 original size:94 final size:94
Alignment explanation
Indices: 120766271--120766483 Score: 331
Period size: 94 Copynumber: 2.3 Consensus size: 94
120766261 GCTTTATCAT
* * *
120766271 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
120766335 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
64 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
* *
120766366 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
*
120766431 CCTTTTGATAACTGGGGCATAAG-CCTTTA
66 CC-TTTAATAACTGGGGCATAAGCCCTTTA
120766460 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
120766484 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
94 79 0.72
95 31 0.28
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (94 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:120766554 original size:9 final size:9
Alignment explanation
Indices: 120766540--120766596 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
120766530 ATCTCATGTG
120766540 CATATCATA
1 CATATCATA
*
120766549 CATATCATGTG
1 CATATCA--TA
120766560 CATATCATA
1 CATATCATA
* *
120766569 CATGTCATGTG
1 CATATCA--TA
120766580 CATATCATA
1 CATATCATA
120766589 CATATCAT
1 CATATCAT
120766597 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:120766556 original size:20 final size:20
Alignment explanation
Indices: 120766528--120766598 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
120766518 GCATTTATGA
*
120766528 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
120766548 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
120766568 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
120766588 ACATATCATGT
1 ACATATCATGT
120766599 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:120766563 original size:11 final size:11
Alignment explanation
Indices: 120766533--120766587 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
120766523 TATGAACATC
120766533 TCATGTGCATA
1 TCATGTGCATA
*
120766544 TCA--TACATA
1 TCATGTGCATA
120766553 TCATGTGCATA
1 TCATGTGCATA
* *
120766564 TCA--TACATG
1 TCATGTGCATA
120766573 TCATGTGCATA
1 TCATGTGCATA
120766584 TCAT
1 TCAT
120766588 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:120769145 original size:39 final size:39
Alignment explanation
Indices: 120769027--120769209 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
120769017 TCGTTCAAAC
* * ** * **
120769027 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
120769067 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
120769107 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
120769146 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
120769185 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
120769210 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:120781157 original size:33 final size:34
Alignment explanation
Indices: 120781099--120781215 Score: 154
Period size: 31 Copynumber: 3.5 Consensus size: 34
120781089 TCAATCATGC
*
120781099 ACTGGGCCGTAGCCCTTTTCATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CC-TTTC-TTTCATATTTCATAAT
120781136 ACT-GGCCGAAGCCTTTCTTTCATA-TTCATAAT
1 ACTGGGCCGAAGCCTTTCTTTCATATTTCATAAT
*
120781168 ACTGGGCCGAAGCC--T-TTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTCTTTCATATTTCATAAT
120781199 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
120781216 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
30 7 0.09
31 22 0.30
32 11 0.15
33 18 0.24
34 4 0.05
35 2 0.03
36 7 0.09
37 3 0.04
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (34 bp):
ACTGGGCCGAAGCCTTTCTTTCATATTTCATAAT
Found at i:120781485 original size:23 final size:23
Alignment explanation
Indices: 120781405--120781523 Score: 159
Period size: 23 Copynumber: 5.0 Consensus size: 23
120781395 TGCTTTATCA
*
120781405 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
120781429 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
120781453 CAATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
120781477 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
120781500 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
120781523 T
1 T
120781524 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 44 0.52
24 29 0.34
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:120781599 original size:20 final size:20
Alignment explanation
Indices: 120781574--120781633 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
120781564 TATGATTACC
120781574 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
120781594 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
120781614 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
120781634 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:120781604 original size:11 final size:11
Alignment explanation
Indices: 120781574--120781628 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
120781564 TATGATTACC
120781574 TCATGTGCATA
1 TCATGTGCATA
*
120781585 TCA--TACATA
1 TCATGTGCATA
120781594 TCATGTGCATA
1 TCATGTGCATA
* *
120781605 TCA--TACATT
1 TCATGTGCATA
120781614 TCATGTGCATA
1 TCATGTGCATA
120781625 TCAT
1 TCAT
120781629 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:120785732 original size:30 final size:30
Alignment explanation
Indices: 120785698--120785758 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
120785688 TCCTTAACTC
120785698 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
120785728 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
120785758 A
1 A
120785759 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:120790137 original size:30 final size:30
Alignment explanation
Indices: 120790101--120790161 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
120790091 TCCTTAACTC
120790101 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
120790131 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
120790161 A
1 A
120790162 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:120793645 original size:56 final size:56
Alignment explanation
Indices: 120793541--120793762 Score: 230
Period size: 56 Copynumber: 4.0 Consensus size: 56
120793531 TCTTACATGT
* * * * * * **
120793541 AATCACATACCGATGCCAACGTACTAGACATGGTCTTGCTCGTGCACATATATCAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
* *
120793597 AATCACATATCAATTCCAAAGTATTAAACGTGGTCTTACTCGCACACATATATCAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
* * * *
120793653 AATCACATATCGATGCCAACGTATTAAACATGATCTTACTCGCACACATATATTAG
1 AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
* * * ** * **
120793709 GATCGCAGATTGATGCCAACA-TATTAAACATCGTCTTACTTTCACACATATATC
1 AATCACATATCAATGCCAA-AGTATTAAACATGGTCTTACTCGCACACATATATC
120793763 GATGCCATGG
Statistics
Matches: 139, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
56 139 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (56 bp):
AATCACATATCAATGCCAAAGTATTAAACATGGTCTTACTCGCACACATATATCAG
Found at i:120793745 original size:112 final size:112
Alignment explanation
Indices: 120793541--120793762 Score: 266
Period size: 112 Copynumber: 2.0 Consensus size: 112
120793531 TCTTACATGT
* * * ** *
120793541 AATCACATACCGATGCCAACGTACTAGACATGGTCTTGCTCGTGCACATATATCAGAATCACATA
1 AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAGAATCACAGA
* * *
120793606 TCAATTCCAAAGTATTAAACGTGGTCTTACTCGCACACATATATCAG
66 TCAATGCCAAAGTATTAAACATCGTCTTACTCGCACACATATATCAG
* * * * *
120793653 AATCACATATCGATGCCAACGTATTAAACATGATCTTACTCGCACACATATATTAGGATCGCAGA
1 AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAGAATCACAGA
** **
120793718 TTGATGCCAACA-TATTAAACATCGTCTTACTTTCACACATATATC
66 TCAATGCCAA-AGTATTAAACATCGTCTTACTCGCACACATATATC
120793763 GATGCCATGG
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
112 90 0.99
113 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (112 bp):
AATCACATACCGATGCCAACGTACTAAACATGATCTTACTCGCACACATATATCAGAATCACAGA
TCAATGCCAAAGTATTAAACATCGTCTTACTCGCACACATATATCAG
Found at i:120797707 original size:39 final size:39
Alignment explanation
Indices: 120797572--120797690 Score: 211
Period size: 39 Copynumber: 3.1 Consensus size: 39
120797562 TGAATATATA
120797572 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
120797611 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
120797650 TATATGCGAGAATTATATCCGGACTTTAGGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
120797689 TA
1 TA
120797691 CGTGCTGGAC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:120801160 original size:17 final size:19
Alignment explanation
Indices: 120801138--120801174 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
120801128 CACATTGAAG
120801138 TGTTTT-ATCGAAAA-CCT
1 TGTTTTCATCGAAAATCCT
*
120801155 TGTTTTCATTGAAAATCCT
1 TGTTTTCATCGAAAATCCT
120801174 T
1 T
120801175 CTTTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (19 bp):
TGTTTTCATCGAAAATCCT
Found at i:120802891 original size:17 final size:17
Alignment explanation
Indices: 120802869--120802921 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
120802859 ATAAAAAATA
120802869 AAAATAATATATATAAT
1 AAAATAATATATATAAT
120802886 AAAAT-ATATA-ATAA-
1 AAAATAATATATATAAT
*
120802900 AATATAAT-T-TATAAGT
1 AAAATAATATATATAA-T
120802916 AAAATA
1 AAAATA
120802922 TTGAATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 9 0.30
15 6 0.20
16 10 0.33
17 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATAATATATATAAT
Found at i:120802892 original size:12 final size:12
Alignment explanation
Indices: 120802858--120802905 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
120802848 ATACATAATT
120802858 TATAA-AAAATA
1 TATAATAAAATA
* *
120802869 -AAAATAATATA
1 TATAATAAAATA
120802880 TATAATAAAATA
1 TATAATAAAATA
120802892 TATAATAAAATA
1 TATAATAAAATA
120802904 TA
1 TA
120802906 ATTTATAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
10 3 0.10
11 5 0.16
12 23 0.74
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TATAATAAAATA
Found at i:120802899 original size:30 final size:31
Alignment explanation
Indices: 120802865--120802938 Score: 91
Period size: 30 Copynumber: 2.4 Consensus size: 31
120802855 ATTTATAAAA
120802865 AATAAAAATAATATATATAA-TAAAATA-T-AT
1 AATAAAAATAAT-T-TATAAGTAAAATATTAAT
120802895 AATAAAATATAATTTATAAGTAAAATATTGAAT
1 AATAAAA-ATAATTTATAAGTAAAATATT-AAT
120802928 AATAAAAATAA
1 AATAAAAATAA
120802939 CATGATGGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.13
30 15 0.38
31 6 0.15
32 4 0.10
33 9 0.23
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (31 bp):
AATAAAAATAATTTATAAGTAAAATATTAAT
Found at i:120805387 original size:29 final size:28
Alignment explanation
Indices: 120805321--120805414 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
120805311 AAGTCTATAT
* * *
120805321 ACATGCATATGGGCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * *
120805349 TCTTTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCC-CAATC
120805378 ACATTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
120805406 ACATTCATA
1 ACATTCATA
120805415 GTCATGCAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 31 0.55
29 25 0.45
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:120805632 original size:8 final size:8
Alignment explanation
Indices: 120805619--120805672 Score: 65
Period size: 8 Copynumber: 6.8 Consensus size: 8
120805609 AAACTTCCGA
120805619 CTTTTCGG
1 CTTTTCGG
120805627 CTTTTCGG
1 CTTTTCGG
*
120805635 CATTTCGG
1 CTTTTCGG
120805643 CTTTTCGG
1 CTTTTCGG
*
120805651 -TATTTCAG
1 CT-TTTCGG
120805659 CTTTTCGG
1 CTTTTCGG
*
120805667 CATTTC
1 CTTTTC
120805673 AGGATTTGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
7 1 0.03
8 37 0.95
9 1 0.03
ACGTcount: A:0.07, C:0.24, G:0.20, T:0.48
Consensus pattern (8 bp):
CTTTTCGG
Found at i:120805642 original size:16 final size:16
Alignment explanation
Indices: 120805621--120805672 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
120805611 ACTTCCGACT
120805621 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
*
120805637 TTTCGGCTTTTCGGTA
1 TTTCGGCTTTTCGGCA
*
120805653 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
120805669 TTTC
1 TTTC
120805673 AGGATTTGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.08, C:0.23, G:0.21, T:0.48
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:120809543 original size:29 final size:29
Alignment explanation
Indices: 120809509--120809640 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
120809499 TACTCGATTT
** * *
120809509 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
120809538 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
120809567 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
120809596 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
120809625 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
120809641 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:120817022 original size:29 final size:29
Alignment explanation
Indices: 120816988--120817119 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
120816978 TACTCGATTT
** * *
120816988 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
120817017 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
120817046 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
120817075 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
120817104 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
120817120 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:120824601 original size:29 final size:31
Alignment explanation
Indices: 120824552--120824610 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
120824542 AATGTTTATC
* *
120824552 TATTTATTTGATGGATGAAAT-T-GAGATAG
1 TATTTATTTAATAGATGAAATGTGGAGATAG
120824581 TATTTATTATAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
120824611 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAG
Found at i:120827612 original size:44 final size:43
Alignment explanation
Indices: 120827564--120827708 Score: 165
Period size: 44 Copynumber: 3.4 Consensus size: 43
120827554 ATATCGATAA
120827564 CGCACACTTAGTGCCATCGCATTAAACCGAAACTCATTCGGTAT
1 CGCACACTTAGTGCCATC-CATTAAACCGAAACTCATTCGGTAT
* * *
120827608 CGCACACTTAGTGCCA--CA-TATAGCCGAAGCT-ATATCGATAAT
1 CGCACACTTAGTGCCATCCATTA-AACCGAAACTCAT-TCGGT-AT
* *
120827650 -GCACACTTAGTGCCATCACATGAAACCGAAACTCATTCAGTAT
1 CGCACACTTAGTGCCATC-CATTAAACCGAAACTCATTCGGTAT
120827693 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
120827709 CATATAGCTG
Statistics
Matches: 84, Mismatches: 8, Indels: 18
0.76 0.07 0.16
Matches are distributed among these distances:
40 4 0.05
41 29 0.35
42 2 0.02
43 2 0.02
44 44 0.52
45 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
CGCACACTTAGTGCCATCCATTAAACCGAAACTCATTCGGTAT
Found at i:120827654 original size:41 final size:42
Alignment explanation
Indices: 120827548--120827727 Score: 158
Period size: 44 Copynumber: 4.2 Consensus size: 42
120827538 ATGATTTGCT
*
120827548 GAAGCTATATCGATAACGCACACTTAGTGCCATCGCAT-TAAACC
1 GAAGCTAT-TCGATATCGCACACTTAGTGCCAT--CATATAAACC
* * *
120827592 GAAACTCATTCGGTATCGCACACTTAGTGCCA-CATAT-AGCC
1 GAAGCT-ATTCGATATCGCACACTTAGTGCCATCATATAAACC
*
120827633 GAAGCTATATCGATAAT-GCACACTTAGTGCCATCACATGAAACC
1 GAAGCTAT-TCGAT-ATCGCACACTTAGTGCCATCATAT-AAACC
* * *
120827677 GAAACTCATTC-AGTATCGCACACTTAGTGCCA-CATAT-AGCT
1 GAAGCT-ATTCGA-TATCGCACACTTAGTGCCATCATATAAACC
120827718 GAAGCTATTC
1 GAAGCTATTC
120827728 TAATTCACAC
Statistics
Matches: 113, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
40 6 0.05
41 37 0.33
42 7 0.06
43 7 0.06
44 52 0.46
45 4 0.04
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
GAAGCTATTCGATATCGCACACTTAGTGCCATCATATAAACC
Found at i:120827665 original size:85 final size:85
Alignment explanation
Indices: 120827548--120827725 Score: 311
Period size: 85 Copynumber: 2.1 Consensus size: 85
120827538 ATGATTTGCT
* * *
120827548 GAAGCTATATCGATAACGCACACTTAGTGCCATCGCATTAAACCGAAACTCATTCGGTATCGCAC
1 GAAGCTATATCGATAACGCACACTTAGTGCCATCACATGAAACCGAAACTCATTCAGTATCGCAC
120827613 ACTTAGTGCCACATATAGCC
66 ACTTAGTGCCACATATAGCC
*
120827633 GAAGCTATATCGATAATGCACACTTAGTGCCATCACATGAAACCGAAACTCATTCAGTATCGCAC
1 GAAGCTATATCGATAACGCACACTTAGTGCCATCACATGAAACCGAAACTCATTCAGTATCGCAC
*
120827698 ACTTAGTGCCACATATAGCT
66 ACTTAGTGCCACATATAGCC
120827718 GAAGCTAT
1 GAAGCTAT
120827726 TCTAATTCAC
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (85 bp):
GAAGCTATATCGATAACGCACACTTAGTGCCATCACATGAAACCGAAACTCATTCAGTATCGCAC
ACTTAGTGCCACATATAGCC
Found at i:120841344 original size:27 final size:27
Alignment explanation
Indices: 120841284--120841350 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
120841274 ATATATATAC
*
120841284 ATCACATAAGGGCAAAACAATCATCTT
1 ATCATATAAGGGCAAAACAATCATCTT
* * *
120841311 A-CAATATAAGGGCAAAATAGTCATTTT
1 ATC-ATATAAGGGCAAAACAATCATCTT
120841338 ATCATATATAGGG
1 ATCATATA-AGGG
120841351 GGTCTAGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
26 1 0.03
27 27 0.82
28 5 0.15
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (27 bp):
ATCATATAAGGGCAAAACAATCATCTT
Found at i:120844630 original size:43 final size:43
Alignment explanation
Indices: 120844558--120844662 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
120844548 TAGCCCAGCT
* * *
120844558 ATGGTCCTACACGAAATCAAATAAAGATGCAAATTTCCCAGAC
1 ATGGTCTTACACGTAATCAAATAAAGATGCAAATGTCCCAGAC
** * **
120844601 ATGGTCTTACACGTAATCTCATAATGATGCCGATGTCCCAGAC
1 ATGGTCTTACACGTAATCAAATAAAGATGCAAATGTCCCAGAC
*
120844644 ATGGTCTTACACATAATCA
1 ATGGTCTTACACGTAATCA
120844663 CATCTTGTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCAAATAAAGATGCAAATGTCCCAGAC
Found at i:120849342 original size:71 final size:71
Alignment explanation
Indices: 120849256--120849419 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
120849246 CGATTTGTCT
120849256 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
120849321 CTTTCA
66 CTTTCA
120849327 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
120849392 CTTTCA
66 CTTTCA
120849398 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
120849420 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:120849457 original size:71 final size:70
Alignment explanation
Indices: 120849256--120849453 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
120849246 CGATTTGTCT
* * * *
120849256 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
120849321 CTTTCA
65 CTTTCA
* * * *
120849327 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
120849392 CTTTCA
65 CTTTCA
* *
120849398 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
120849454 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:120863166 original size:22 final size:22
Alignment explanation
Indices: 120863141--120863197 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
120863131 AAATAGGGTC
*
120863141 ACACGCCCGTGTGGACGCAGGG
1 ACACGCCCGTGTGGACACAGGG
*
120863163 ACACACCCGTGTGGACACAGGG
1 ACACGCCCGTGTGGACACAGGG
* *
120863185 ACAAGCTCGTGTG
1 ACACGCCCGTGTG
120863198 TCTTCAACAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGGACACAGGG
Found at i:120863844 original size:2 final size:2
Alignment explanation
Indices: 120863837--120863879 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
120863827 AAAGCTTAAC
120863837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120863879 A
1 A
120863880 GCCGACACGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:120878508 original size:11 final size:12
Alignment explanation
Indices: 120878492--120878522 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
120878482 CAAGATAGAA
120878492 ATAATTATTTT-
1 ATAATTATTTTG
120878503 ATAATTATTTTG
1 ATAATTATTTTG
120878515 ATAATTAT
1 ATAATTAT
120878523 GATATGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (12 bp):
ATAATTATTTTG
Found at i:120887265 original size:46 final size:46
Alignment explanation
Indices: 120887206--120887378 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
120887196 TGGTTGAGCA
* *
120887206 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * * *
120887252 TCTGAGCTCGTTGAGTTGAGCCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
120887299 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
120887345 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
120887379 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.57
47 25 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:120887352 original size:93 final size:93
Alignment explanation
Indices: 120887203--120887373 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
120887193 GGATGGTTGA
* * * *
120887203 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
120887268 TGAGCCCAAGTTCGTGAGATGTAACTAG
66 TGAGCCCAAGTTCGTGAGATGTAACTAG
* * * *
120887296 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
* *
120887361 TGAGTCCGAGTTC
66 TGAGCCCAAGTTC
120887374 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
TGAGCCCAAGTTCGTGAGATGTAACTAG
Found at i:120900654 original size:42 final size:42
Alignment explanation
Indices: 120900607--120900692 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
120900597 TAAGCATTTT
120900607 CACCGAAATCCACTTAGAAAAAGTCGCTTATTTAACACCCAA
1 CACCGAAATCCACTTAGAAAAAGTCGCTTATTTAACACCCAA
* *
120900649 CACCGAAATCCACTTAGAAAAAGTTGTTTATTTAACACCCAA
1 CACCGAAATCCACTTAGAAAAAGTCGCTTATTTAACACCCAA
120900691 CA
1 CA
120900693 TTCATTTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.41, C:0.27, G:0.09, T:0.23
Consensus pattern (42 bp):
CACCGAAATCCACTTAGAAAAAGTCGCTTATTTAACACCCAA
Found at i:120902832 original size:39 final size:39
Alignment explanation
Indices: 120902786--120902928 Score: 250
Period size: 39 Copynumber: 3.7 Consensus size: 39
120902776 TATATATTCG
120902786 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCA
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCA
* *
120902825 GGCTAAGTCCCGAAAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCA
* *
120902864 GGCCAAGTCCCGAAGGCATTCGTGCTGGTGTTATACCCA
1 GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCA
120902903 GGCTAAGTCCCGAAGGCATTCGTGCT
1 GGCTAAGTCCCGAAGGCATTCGTGCT
120902929 TGTCGAAACC
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 97 1.00
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCA
Found at i:120903813 original size:25 final size:23
Alignment explanation
Indices: 120903761--120903815 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
120903751 TATAAATAGT
120903761 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
120903784 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
120903809 AATAGTG
1 AATAGTG
120903816 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:120903895 original size:22 final size:22
Alignment explanation
Indices: 120903861--120903944 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
120903851 TATACATATG
*
120903861 TATAAATAGATATAAAAAAAATA
1 TATACATA-ATATAAAAAAAATA
* *
120903884 TGTACATAATATAGTGTAAAAAATA
1 TATACATAATATA---AAAAAAATA
* **
120903909 CATACATAATATAATTAAAATA
1 TATACATAATATAAAAAAAATA
*
120903931 TATACATAAGATAA
1 TATACATAATATAA
120903945 CATGTAGAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
22 23 0.48
23 6 0.12
25 19 0.40
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.30
Consensus pattern (22 bp):
TATACATAATATAAAAAAAATA
Found at i:120904003 original size:25 final size:24
Alignment explanation
Indices: 120903967--120904098 Score: 101
Period size: 23 Copynumber: 5.6 Consensus size: 24
120903957 ATATATATAT
*
120903967 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
120903992 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* * *
120904015 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATATAGTATTAAG
* * *
120904039 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* * *
120904061 AATATCTATATAATATAATATTAAG
1 -ATATATACATAATATAGTATTAAG
*
120904086 AAATATA-ATAATA
1 ATATATACATAATA
120904099 ACAAAAAAAA
Statistics
Matches: 83, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
22 2 0.02
23 39 0.47
24 22 0.27
25 20 0.24
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:120904018 original size:23 final size:23
Alignment explanation
Indices: 120903954--120904031 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
120903944 ACATGTAGAA
*
120903954 AAAATA-TATATATATATATAAAT
1 AAAATAGTATA-ATATATATACAT
* *
120903977 AATATAGTATTAAAGATATATACAT
1 AAAATAGTA-T-AATATATATACAT
*
120904002 AAAATAGTATAATATATATACGT
1 AAAATAGTATAATATATATACAT
*
120904025 AATATAG
1 AAAATAG
120904032 AATTTAGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 22 0.49
24 3 0.07
25 19 0.42
26 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (23 bp):
AAAATAGTATAATATATATACAT
Found at i:120904417 original size:16 final size:16
Alignment explanation
Indices: 120904379--120904417 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
120904369 CTCCAAAAAA
*
120904379 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
120904395 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
120904411 AATAACT
1 AAAAACT
120904418 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:120904609 original size:30 final size:30
Alignment explanation
Indices: 120904571--120904671 Score: 168
Period size: 30 Copynumber: 3.4 Consensus size: 30
120904561 TGTAGGTACA
*
120904571 AGTA-GTGGTGGAGCAAGTGTGGCTAATGG
1 AGTAGGTGGTGGAGCAAGTGTGGCTAGTGG
120904600 AGTAGGTGGTGGAGCAAGTGTGGCTAGTGG
1 AGTAGGTGGTGGAGCAAGTGTGGCTAGTGG
*
120904630 AGTTGGTGGTGGAGCAAGTGTGGCTAGTGG
1 AGTAGGTGGTGGAGCAAGTGTGGCTAGTGG
*
120904660 AGTTGGTGGTGG
1 AGTAGGTGGTGG
120904672 CAAAGGCTAG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 4 0.06
30 65 0.94
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
AGTAGGTGGTGGAGCAAGTGTGGCTAGTGG
Found at i:120904631 original size:18 final size:18
Alignment explanation
Indices: 120904608--120904661 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
120904598 GGAGTAGGTG
120904608 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
120904626 GT-G-G--AGT-TGG-TG
1 GTGGAGCAAGTGTGGCTA
120904638 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
120904656 GTGGAG
1 GTGGAG
120904662 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 4 0.14
14 4 0.14
16 4 0.14
17 4 0.14
18 9 0.32
ACGTcount: A:0.19, C:0.07, G:0.50, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:120905687 original size:91 final size:91
Alignment explanation
Indices: 120905352--120905897 Score: 437
Period size: 91 Copynumber: 6.0 Consensus size: 91
120905342 ATTAGGCATT
* ** * * * *
120905352 AAAAACAGAAATTGAAAATAATTCAGCACGTGAGCC-AAGGCTTAACTCACTTCTCGCAATATGA
1 AAAAAAAGAAATTGAAAATACCTCAG--CGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGA
120905416 GTTGA--TTTTT-AAAACA-AAATTTG--
64 GTTGATTTTTTTGAAAACAGAAA-TTGAA
* * ** * ** * *
120905439 TAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
120905504 TTGA--TTTTTGCAAAGCATAAATTGAA
65 TTGATTTTTTTG-AAAACAGAAATTGAA
* *
120905530 GAAAAAAA-ATCAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 -AAAAAAAGA--AATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATAT
*
120905594 GAGTTGATTTTTTTGACAAACATAAATTGAA
62 GAGTTGATTTTTTTGA-AAACAGAAATTGAA
* * *
120905625 AAAAAAAGAAATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGTAATATGAGT
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
120905689 TGATTTTTTGGAAAAACA-AAATTTG--
66 TGATTTTTTTG-AAAACAGAAA-TTGAA
* * ** * * *
120905714 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCACTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAG
*
120905779 CTGATTTTTTTTGAAACACAGAAATTG--
65 TTGA-TTTTTTTGAAA-ACAGAAATTGAA
* * * * * * * *
120905806 AAGAATAGAAATGGAAAACACCTCAAC--GT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
120905868 TGATTTTTTTTGAAAGACAGAAATTGAA
66 TGA-TTTTTTTGAAA-ACAGAAATTGAA
120905896 AA
1 AA
120905898 TACCTCAACG
Statistics
Matches: 381, Mismatches: 55, Indels: 43
0.80 0.11 0.09
Matches are distributed among these distances:
85 3 0.01
86 2 0.01
87 54 0.14
88 51 0.13
89 37 0.10
90 11 0.03
91 79 0.21
92 40 0.10
93 76 0.20
94 8 0.02
95 20 0.05
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (91 bp):
AAAAAAAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAACAGAAATTGAA
Found at i:120905731 original size:13 final size:14
Alignment explanation
Indices: 120905699--120905731 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
120905689 TGATTTTTTG
120905699 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
120905713 GAAAAACAGAATTT
1 GAAAAACAAAATTT
120905727 GAAAA
1 GAAAA
120905732 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:120906022 original size:147 final size:145
Alignment explanation
Indices: 120905803--120906410 Score: 742
Period size: 147 Copynumber: 4.1 Consensus size: 145
120905793 AACACAGAAA
* * * *
120905803 TTGAAGAATAGAAATGGAAAACACCTCAAC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGAA-AACAGAAATTGAAAATACCTCAACGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
120905867 CTGATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 TTGA---TTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTC
*
120905931 TTGCAATATGAGTTGA-TTT
126 TCGCAATATGAGTTGATTTT
* * * * * *
120905950 TTGACAAACAAAAATTGAAATTACCTCAAC-GTCTTGAAGTTCAACTCACCTATCACAATATGAG
1 TTGA-AAACAGAAATTGAAAATACCTCAACGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
120906014 TTGATTTTTTTGAAAAACAGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTC
65 TTGA--TTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
*
120906079 GCAATATGAGCTGATTTT
128 GCAATATGAGTTGATTTT
* *
120906097 TTTAAAGGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACG-GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * **
120906162 GTTGATTTTTGACAAACAAAAATTGAAATTA-CTCAGCGTGTCCTGAGGCTCAACTCACCGATCG
64 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
120906226 CAATATGAGTTGATTTTT
129 CAATATGAGTTGA-TTTT
*
120906244 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACG-GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
120906309 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCA
64 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
120906374 CAATATGAGTTGATTTT
129 CAATATGAGTTGATTTT
* *
120906391 TT-AGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
120906411 AACGAAAATT
Statistics
Matches: 410, Mismatches: 41, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
145 1 0.00
146 124 0.30
147 205 0.50
148 46 0.11
149 34 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (145 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTT
Found at i:120906334 original size:220 final size:220
Alignment explanation
Indices: 120905803--120906405 Score: 892
Period size: 220 Copynumber: 2.7 Consensus size: 220
120905793 AACACAGAAA
* * *
120905803 TTGAAGAATAGAAATGGAAAACACCTCAAC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
120905866 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGA--TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * *
120905931 TTGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTCTTGAAGTTCAACT
129 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTCCTGAAGCTCAACT
*
120905996 CACCTATCACAATATGAGTTGATTTTT
194 CACCGATCACAATATGAGTTGATTTTT
120906023 TTGAAAAACAGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
120906088 GCTGATTTTTTTAAAGGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
120906153 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTA-CTCAGCGTGTCCTGAGGCTCAACT
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAAC--GTCCTGAAGCTCAACT
*
120906217 CACCGATCGCAATATGAGTTGATTTTT
194 CACCGATCACAATATGAGTTGATTTTT
* * *
120906244 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * *
120906309 GTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
66 GCTGATTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* * * *
120906372 CACAATATGAGTTGATTTTTTAGAAACATAAATT
130 CGCAATATGAGTTGATTTTTGACAAACAAAAATT
120906406 AAAAAAACGA
Statistics
Matches: 350, Mismatches: 28, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
219 5 0.01
220 201 0.57
221 106 0.30
222 38 0.11
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (220 bp):
TTGAAAAACAGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTCCTGAAGCTCAACTCA
CCGATCACAATATGAGTTGATTTTT
Found at i:120906399 original size:73 final size:74
Alignment explanation
Indices: 120905812--120906410 Score: 734
Period size: 73 Copynumber: 8.2 Consensus size: 74
120905802 ATTGAAGAAT
* * * *
120905812 AGAAATGGAAAACACCTCAAC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
120905875 TTTTGA-AAGAC
65 TTTT-ACAA-AC
*
120905886 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120905950 TTGACAAAC
66 TTTACAAAC
* * * * * *
120905959 AAAAATTGAAATTACCTCAAC--GTCTTGAAGTTCAACTCACCTATCACAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120906022 TTTGAAAAAC
66 TTT-ACAAAC
* * *
120906032 AGAAATTGAAAACACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120906097 TTTA-AAGGC
66 TTTACAA-AC
120906106 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120906170 TTGACAAAC
66 TTTACAAAC
* * * * **
120906179 AAAAATTGAAATTA-CTCAGCGTGTCCTGAGGCTCAACTCACCGATCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120906243 TTTGAAAAAC
66 TTT-ACAAAC
* *
120906253 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-GTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120906317 TTGACAAAC
66 TTTACAAAC
* * * * * *
120906326 AAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCACAATATGAGTTGA-TTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
120906390 TTTAGAAAC
66 TTTACAAAC
* *
120906399 ATAAATTAAAAA
1 AGAAATTGAAAA
120906411 AACGAAAATT
Statistics
Matches: 454, Mismatches: 59, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
71 33 0.07
72 47 0.10
73 148 0.33
74 109 0.24
75 82 0.18
76 35 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTACAAAC
Found at i:120906618 original size:14 final size:13
Alignment explanation
Indices: 120906580--120906624 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
120906570 TTGATTTTTG
120906580 AAAAACAGAAATT
1 AAAAACAGAAATT
* *
120906593 AAAAGCAAAAATT
1 AAAAACAGAAATT
120906606 GAAAAACAGAAATT
1 -AAAAACAGAAATT
120906620 AAAAA
1 AAAAA
120906625 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.71, C:0.07, G:0.09, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:120906636 original size:100 final size:100
Alignment explanation
Indices: 120906408--120906697 Score: 410
Period size: 100 Copynumber: 2.9 Consensus size: 100
120906398 CATAAATTAA
*
120906408 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
120906472 TGA--TTTGAAAAGA-AGAATTTGTAAGGCAAAAATTG
64 TGATTTTTGAAAA-ACAGAAATTGAAAAGCAAAAATTG
120906507 AAAAACAGAAATTGAAAATACCTCAGCGTGCCATGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTT
120906572 GATTTTTGAAAAACAGAAATT-AAAAGCAAAAATTG
65 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
120906607 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
120906672 GATTTTTGAAAAGCATAAATTGAAAA
65 GATTTTTGAAAAACAGAAATTGAAAA
120906698 AACGGAAATT
Statistics
Matches: 174, Mismatches: 10, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
98 1 0.01
99 62 0.36
100 91 0.52
101 20 0.11
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (100 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:120906756 original size:90 final size:87
Alignment explanation
Indices: 120906593--120906768 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 87
120906583 AACAGAAATT
* * * *
120906593 AAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCCGCGTGACCCGAGGCCCAACTCACCTC
120906658 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * *
120906680 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAACGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAAAAATTG-AAAAACAGAAATTAAAAATACCTC--CGCGTGACCCGAGGCCCAACTCAC
120906745 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
120906769 TTGAAAGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 13 0.17
88 22 0.29
90 42 0.55
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (87 bp):
AAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCCGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:120917727 original size:40 final size:40
Alignment explanation
Indices: 120917653--120917805 Score: 148
Period size: 40 Copynumber: 3.9 Consensus size: 40
120917643 CCGCACCAAG
* * * * * *
120917653 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
120917693 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
120917733 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
120917773 GTCC-TC-GGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
120917806 NNNNNNNNNN
Statistics
Matches: 92, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 21 0.23
40 69 0.75
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:120921714 original size:29 final size:29
Alignment explanation
Indices: 120921680--120921757 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
120921670 GTGACGAGAT
* *
120921680 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
120921709 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
120921738 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
120921758 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:120925339 original size:20 final size:20
Alignment explanation
Indices: 120925314--120925355 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
120925304 CACAACCTTC
120925314 TCAAGAATGTTTTTAATTTG
1 TCAAGAATGTTTTTAATTTG
120925334 TCAAGAATGTTTTTAATTTG
1 TCAAGAATGTTTTTAATTTG
120925354 TC
1 TC
120925356 GATTTGATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (20 bp):
TCAAGAATGTTTTTAATTTG
Found at i:120930164 original size:17 final size:16
Alignment explanation
Indices: 120930133--120930166 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
120930123 AAATATTATT
120930133 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
120930149 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
120930166 A
1 A
120930167 CACCATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:120933192 original size:43 final size:43
Alignment explanation
Indices: 120933072--120933239 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
120933062 TACTGAGATG
* * * * * *
120933072 TGATTACATGTAATACCATGTATGGGAAATTGGCATTGTATTA
1 TGATTACGTGTAAGACCATGTCTGGGACAGTGGCATTGTATAA
* *
120933115 TGATTACGTGTAAGACCATGTCTGGTACATTGGCATTGT-TAA
1 TGATTACGTGTAAGACCATGTCTGGGACAGTGGCATTGTATAA
* * * * *
120933157 TCGATTACGTGTAAGGCCCTGTCTGGGATAGTGGCATCG-ATATG
1 T-GATTACGTGTAAGACCATGTCTGGGACAGTGGCATTGTATA-A
* * * * *
120933201 TGATAACATGTAAGACCATATCTAGGATA-TGGCATTGTA
1 TGATTACGTGTAAGACCATGTCTGGGACAGTGGCATTGTA
120933240 CAAGCTATAT
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
42 10 0.10
43 90 0.89
44 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACAGTGGCATTGTATAA
Found at i:120934218 original size:67 final size:67
Alignment explanation
Indices: 120934135--120934269 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
120934125 TGTATTGAAA
*
120934135 TGGTACCAATTTGGTTGCAATGTATGGTTGAGAGTAGGGTGGCAAATTGGCTTTTCAAATGGCCT
1 TGGTACCAATTTGGTTGAAATGTATGGTTGAGAGTAGGGTGGCAAATTGGCTTTTCAAATGGCCT
120934200 AT
66 AT
120934202 TGGTACCAATTTGGTTGAAATGTATGGTTGAGAGTAGGGTGGCAAATTGGCTTTTCAAATGGCCT
1 TGGTACCAATTTGGTTGAAATGTATGGTTGAGAGTAGGGTGGCAAATTGGCTTTTCAAATGGCCT
120934267 AT
66 AT
120934269 T
1 T
120934270 TTTGGCCACA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.24, C:0.11, G:0.30, T:0.35
Consensus pattern (67 bp):
TGGTACCAATTTGGTTGAAATGTATGGTTGAGAGTAGGGTGGCAAATTGGCTTTTCAAATGGCCT
AT
Found at i:120935679 original size:31 final size:29
Alignment explanation
Indices: 120935644--120935701 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 29
120935634 AATTGCATTC
120935644 ATTAAGGA-ATTTTTTATATTTAAAATTTATG
1 ATTAA-GATATTTTTTATA--TAAAATTTATG
*
120935675 ATTAATATATTTTTTATATAAAATTTA
1 ATTAAGATATTTTTTATATAAAATTTA
120935702 AATATTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 9 0.36
30 1 0.04
31 15 0.60
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (29 bp):
ATTAAGATATTTTTTATATAAAATTTATG
Done.