Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 396 of 770
Found at i:121661778 original size:40 final size:40
Alignment explanation
Indices: 121661719--121661926 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
121661709 CAATTGAATG
* * * *
121661719 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
121661759 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
121661799 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
121661839 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
121661879 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
121661919 ATATCCGG
1 ATATCCGG
121661927 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:121661857 original size:80 final size:80
Alignment explanation
Indices: 121661720--121661926 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
121661710 AATTGAATGA
* * ** * * *
121661720 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
121661785 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
121661798 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
121661863 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
121661880 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
121661927 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:121665531 original size:49 final size:50
Alignment explanation
Indices: 121665472--121665693 Score: 166
Period size: 46 Copynumber: 4.7 Consensus size: 50
121665462 AGGGTATAAT
*
121665472 GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTATGGA-A-AT-CGAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTAT-CACATATCCG-G
* * * * *
121665521 GCTGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCGT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTATCACATATCCGG
* * * **
121665571 TCTAATGCCATGTCCCAGACATGGTCTTACACT-A--A-CACATCTCCTA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTATCACATATCCGG
* ** * *
121665617 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGCCT-T-ACGTCT-CGAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTATCACATATCCG-G
*
121665663 GCTGATG-CATGTCCCAAACAT-GTCTTACACT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACT
121665694 CTAGCTCTCA
Statistics
Matches: 141, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 46 0.33
48 1 0.01
49 36 0.26
50 31 0.22
51 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (50 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTATCACATATCCGG
Found at i:121665593 original size:50 final size:49
Alignment explanation
Indices: 121665476--121665606 Score: 149
Period size: 50 Copynumber: 2.7 Consensus size: 49
121665466 TATAATGCTG
* *
121665476 ATGCCATGTCCCAGACATGGTCTTACACTAACTATGGAAATCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATGCAAATCGAGGCTA
* * * * **
121665525 ACGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CACATATCCG-TTCTA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATGCA-A-AT-CGAGGCTA
121665575 ATGCCATGTCCCAGACATGGTCTTACACTAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAAC
121665607 ACATCTCCTA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
48 1 0.01
49 32 0.47
50 33 0.49
51 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATGCAAATCGAGGCTA
Found at i:121680026 original size:40 final size:40
Alignment explanation
Indices: 121679960--121680126 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
121679950 AAATTGAATG
* * *
121679960 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
121679999 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
121680039 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
121680079 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
121680119 ATATCCGG
1 ATATCCGG
121680127 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:121684952 original size:40 final size:40
Alignment explanation
Indices: 121684907--121685036 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
121684897 CGGAATATAA
121684907 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
121684947 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
121684987 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
121685027 CCGGATATAA
1 CCGGATATAA
121685037 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:121685051 original size:40 final size:39
Alignment explanation
Indices: 121684923--121685073 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
121684913 ATAACCATGT
* * *
121684923 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
121684963 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
121685003 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
121685042 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
121685074 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:121685057 original size:80 final size:79
Alignment explanation
Indices: 121684907--121685073 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
121684897 CGGAATATAA
*
121684907 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
121684972 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
121684987 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
121685049 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
121685066 CCGGATAT
1 CCGGATAT
121685074 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:121691435 original size:40 final size:40
Alignment explanation
Indices: 121691390--121691519 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
121691380 CGGAATATAA
121691390 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
121691430 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
121691470 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
121691510 CCGGATATAA
1 CCGGATATAA
121691520 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:121691534 original size:40 final size:39
Alignment explanation
Indices: 121691406--121691556 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
121691396 ATAACCATGT
* * *
121691406 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
121691446 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
121691486 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
121691525 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
121691557 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:121691540 original size:80 final size:79
Alignment explanation
Indices: 121691390--121691556 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
121691380 CGGAATATAA
*
121691390 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
121691455 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
121691470 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
121691532 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
121691549 CCGGATAT
1 CCGGATAT
121691557 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:121703131 original size:45 final size:45
Alignment explanation
Indices: 121702837--121703204 Score: 208
Period size: 45 Copynumber: 8.0 Consensus size: 45
121702827 AAGCCACGAG
* * * *
121702837 TCTTACCTCCCTGAAGTTGTAGTAGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * *
121702882 CCTTATCTCCCTGAAGTTGTAGTAGAGCAGGTTGAAGATAG-AGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-AA
* * * * * ** ** *
121702927 TCTCATTTCCTTAAAGTTGCAATGGAATAGATCAAAGCTA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
** * * **
121702971 TCAAATCCTATACCTCTAAAGTTGCAGAAGG-TTAGATT-AAGCCATCACGACAAA
1 TCTTAT-C--T-CC-CTGAAGTTGCAG-TGGAGCAGATTGAAG--AT-A-G-CAAA
* * * ** *
121703025 TCTTGTCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG-CCGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
*
121703069 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * * *
121703114 CCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATAGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
* * ** ** *
121703159 TCTCATTTCCCTGAAGTTATAGTGGAATAGATCGAAGATA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
121703203 TC
1 TC
121703205 ACAAATCCTA
Statistics
Matches: 245, Mismatches: 61, Indels: 35
0.72 0.18 0.10
Matches are distributed among these distances:
44 48 0.20
45 141 0.58
47 1 0.00
48 7 0.03
49 30 0.12
50 8 0.03
51 2 0.01
53 1 0.00
54 7 0.03
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAA
Found at i:121703147 original size:232 final size:233
Alignment explanation
Indices: 121702741--121703214 Score: 657
Period size: 232 Copynumber: 2.0 Consensus size: 233
121702731 GTGAAACCAT
* * * * * **
121702741 AAATCCTATACCTCTAAAGTTGCAGTAGGTCGGATTAAGCCACTATGGCGAATCTTGTCTCTTTG
1 AAATCCTATACCTCTAAAGTTGCAGAAGGTCAGATTAAGCCACTACGACAAATCTTGTCTCCCTG
* * * *
121702806 AAGTTGTAGTGGTCTAGATTAAAGCCACGAGTCTTACCTCCCTGAAGTTGTAGTAGAGCAGACTG
66 AAGTTGTAGTGGGCTAGATTAAAGCCACAAGTCTTACCTCCCTGAAGTTGCAGTAGAGCAAACTG
* *
121702871 AAGATAGCAAACCTTATCTCCCTGAAGTTGTAGTAGAGCAGGTTGAAGATAGAGAATCTCATTTC
131 AAGATAGCAAACCTTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGATAGAGAATCTCATTTC
* * *
121702936 CTTAAAGTTGCAATGGAATAGATCAAAGCTACAAAT-C
196 CCTAAAGTTACAATGGAATAGATCAAAGATACAAATAC
*
121702973 AAATCCTATACCTCTAAAGTTGCAGAAGGTTAGATTAAGCCA-TCACGACAAATCTTGTCTCCCT
1 AAATCCTATACCTCTAAAGTTGCAGAAGGTCAGATTAAGCCACT-ACGACAAATCTTGTCTCCCT
* * * *
121703037 GAAGTTGTAGTGGAGC-AGATTAAAGCCGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAAT
65 GAAGTTGTAGTGG-GCTAGATTAAAGCCACAAGTCTTACCTCCCTGAAGTTGCAGTAGAGCAAAC
* *
121703101 TGAAGATAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATAGCGAATCTCATT
129 TGAAGATAGCAAACCTTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGATAGAGAATCTCATT
* * * *
121703166 TCCCTGAAGTTATAGTGGAATAGATCGAAGATACAAATCAC
194 TCCCTAAAGTTACAATGGAATAGATCAAAGATACAAAT-AC
121703207 AAATCCTA
1 AAATCCTA
121703215 CGCCCTTGAA
Statistics
Matches: 211, Mismatches: 27, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
231 1 0.00
232 200 0.95
233 1 0.00
234 9 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (233 bp):
AAATCCTATACCTCTAAAGTTGCAGAAGGTCAGATTAAGCCACTACGACAAATCTTGTCTCCCTG
AAGTTGTAGTGGGCTAGATTAAAGCCACAAGTCTTACCTCCCTGAAGTTGCAGTAGAGCAAACTG
AAGATAGCAAACCTTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGATAGAGAATCTCATTTC
CCTAAAGTTACAATGGAATAGATCAAAGATACAAATAC
Found at i:121703686 original size:14 final size:14
Alignment explanation
Indices: 121703651--121703698 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
121703641 AAATAGCAAA
* *
121703651 CCCAACTACACTAA
1 CCCAATTACACTAG
121703665 CCCAATTACACTAG
1 CCCAATTACACTAG
* *
121703679 CCCGATTACACAAG
1 CCCAATTACACTAG
121703693 CCCAAT
1 CCCAAT
121703699 GGCCTAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.38, C:0.40, G:0.06, T:0.17
Consensus pattern (14 bp):
CCCAATTACACTAG
Found at i:121704884 original size:26 final size:26
Alignment explanation
Indices: 121704855--121704923 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
121704845 TTTTAGCTTC
*
121704855 AAACTATTATATATATTATTTATTTT
1 AAACTATTTTATATATTATTTATTTT
*
121704881 AAACTATTTTATATACTATTTATTTT
1 AAACTATTTTATATATTATTTATTTT
* *
121704907 AAATTGTTTTATATATT
1 AAACTATTTTATATATT
121704924 TGATTTGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (26 bp):
AAACTATTTTATATATTATTTATTTT
Found at i:121705099 original size:3 final size:3
Alignment explanation
Indices: 121705091--121705120 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
121705081 TGCTCTACCT
*
121705091 TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
121705121 CTTTTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:121711525 original size:40 final size:40
Alignment explanation
Indices: 121711481--121711586 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 40
121711471 TTCACAATTT
* *
121711481 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
121711521 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
121711561 GCATAAATGTCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
121711587 AGATATCATT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:121722162 original size:21 final size:20
Alignment explanation
Indices: 121722128--121722166 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
121722118 CAAATCAACA
121722128 TCGTAGATCTTTTAATTTTTT
1 TCGTAGATCTTTT-ATTTTTT
121722149 TCGTAGCATC-TTTATTTT
1 TCGTAG-ATCTTTTATTTT
121722167 CACAGTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 9 0.53
22 3 0.18
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.59
Consensus pattern (20 bp):
TCGTAGATCTTTTATTTTTT
Found at i:121724902 original size:12 final size:12
Alignment explanation
Indices: 121724887--121724911 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121724877 GAAATTGACA
121724887 TTACGAGCAAGC
1 TTACGAGCAAGC
121724899 TTACGAGCAAGC
1 TTACGAGCAAGC
121724911 T
1 T
121724912 CAACAGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (12 bp):
TTACGAGCAAGC
Found at i:121727407 original size:5 final size:5
Alignment explanation
Indices: 121727397--121727444 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
121727387 CAACGTGTGA
121727397 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
121727445 GAACAAACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:121733574 original size:14 final size:14
Alignment explanation
Indices: 121733555--121733588 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
121733545 CAAGGTGTGG
121733555 CCTCTAAAGGTGCC
1 CCTCTAAAGGTGCC
121733569 CCTCTAAAGGTGCC
1 CCTCTAAAGGTGCC
121733583 CCTCTA
1 CCTCTA
121733589 TACGCATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (14 bp):
CCTCTAAAGGTGCC
Found at i:121738746 original size:40 final size:40
Alignment explanation
Indices: 121738701--121738830 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
121738691 CGGAATACAA
121738701 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
121738741 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
121738781 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
121738821 CCGGATATAA
1 CCGGATATAA
121738831 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:121738845 original size:40 final size:40
Alignment explanation
Indices: 121738701--121738864 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
121738691 CGGAATACAA
* **
121738701 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
121738741 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
121738781 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
121738821 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
121738861 CCGG
1 CCGG
121738865 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:121742336 original size:40 final size:40
Alignment explanation
Indices: 121742267--121742407 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
121742257 ACCAAGGCTA
* * * * *
121742267 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
121742307 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
121742347 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
*
121742387 CGGGTCTTAACCCGGATATAA
1 CGGGTCTTAGCCCGGATATAA
121742408 TTTTTAGCAT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:121742416 original size:40 final size:39
Alignment explanation
Indices: 121742267--121742445 Score: 153
Period size: 40 Copynumber: 4.5 Consensus size: 39
121742257 ACCAAGGCTA
* * ** *
121742267 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATAT-AAAATTTGCACAATTGCCTT
* *
121742307 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAA-AATTTGCAC-AATTGCCTT
** * *
121742347 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATA-AAATTTGCACAATTGCCTT
* ** * *
121742387 CGGGTCTTAACCCGGATATAATTTTTAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAAAATTT-GCACAATTGCCTT
*
121742427 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
121742446 CATTCAATTT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 5 0.04
40 108 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (39 bp):
CGGGTCTTAGCCCGGATATAAAATTTGCACAATTGCCTT
Found at i:121752278 original size:29 final size:29
Alignment explanation
Indices: 121752245--121752337 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
121752235 TGACGAGATT
* *
121752245 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
121752274 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
121752303 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
121752332 GGCACT
1 GGCACT
121752338 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:121752350 original size:29 final size:29
Alignment explanation
Indices: 121752245--121752350 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
121752235 TGACGAGATT
* *
121752245 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
121752274 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
121752303 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
121752332 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
121752351 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:121760209 original size:29 final size:29
Alignment explanation
Indices: 121760176--121760268 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
121760166 TGACGAGATT
* *
121760176 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
121760205 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
121760234 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
121760263 GGCACT
1 GGCACT
121760269 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:121760281 original size:29 final size:29
Alignment explanation
Indices: 121760176--121760281 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
121760166 TGACGAGATT
* *
121760176 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
121760205 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
121760234 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
121760263 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
121760282 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:121766641 original size:25 final size:25
Alignment explanation
Indices: 121766612--121766659 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
121766602 TTATAACATG
* * *
121766612 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
121766637 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
121766660 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:121766743 original size:11 final size:11
Alignment explanation
Indices: 121766707--121766762 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
121766697 CATGGTATGT
121766707 ATGATATGCAC
1 ATGATATGCAC
* *
121766718 ATGACATG--T
1 ATGATATGCAC
121766727 ATGATATGCAC
1 ATGATATGCAC
*
121766738 ATGATATG--T
1 ATGATATGCAC
121766747 ATGATATGCAC
1 ATGATATGCAC
121766758 ATGAT
1 ATGAT
121766763 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:121766762 original size:20 final size:20
Alignment explanation
Indices: 121766696--121766762 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
121766686 ATTTTGATAA
*
121766696 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
121766716 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
121766736 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
121766756 ACATGAT
1 ACATGAT
121766763 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:121766868 original size:24 final size:24
Alignment explanation
Indices: 121766813--121766930 Score: 150
Period size: 24 Copynumber: 4.9 Consensus size: 24
121766803 AGGAAGTGAC
*
121766813 AAAGGGCTTATGCCCCAATTATT-
1 AAAGGGCTTATGCCCCAGTTATTA
121766836 AAAGGGCTTATGCCCCAGTTATTA
1 AAAGGGCTTATGCCCCAGTTATTA
*
121766860 AAAGGGCTTTTGCCCCAGTTATTA
1 AAAGGGCTTATGCCCCAGTTATTA
* * *
121766884 AAAGGTCTTTTGCCCCAGTTATTC
1 AAAGGGCTTATGCCCCAGTTATTA
*
121766908 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
121766931 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 10 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATTA
Found at i:121767159 original size:31 final size:31
Alignment explanation
Indices: 121767124--121767187 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
121767114 CGTTTACAGT
121767124 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
121767155 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
121767186 AA
1 AA
121767188 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:121770119 original size:16 final size:16
Alignment explanation
Indices: 121770100--121770130 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
121770090 TGGTTATTTG
*
121770100 ATATGTGATGTAAATT
1 ATATATGATGTAAATT
121770116 ATATATGATGTAAAT
1 ATATATGATGTAAAT
121770131 GAAAATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (16 bp):
ATATATGATGTAAATT
Found at i:121772414 original size:28 final size:28
Alignment explanation
Indices: 121772374--121772429 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
121772364 ATGCCGTTGA
* *
121772374 ATACTCAATATCTCTCACACTAAGTGCC
1 ATACTCAACATCTCACACACTAAGTGCC
*
121772402 ATACTCGACATCTCACACACTAAGTGCC
1 ATACTCAACATCTCACACACTAAGTGCC
121772430 GTACATAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.32, C:0.34, G:0.09, T:0.25
Consensus pattern (28 bp):
ATACTCAACATCTCACACACTAAGTGCC
Found at i:121772483 original size:40 final size:40
Alignment explanation
Indices: 121772417--121772550 Score: 196
Period size: 40 Copynumber: 3.4 Consensus size: 40
121772407 CGACATCTCA
* *
121772417 CACACTAAGTGCCGTACATAGCCGAAGCTATCTTAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTTAAATCG
* * *
121772457 CACACTATGTGCCATATATAGTCGAAGGTATCTTAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTTAAATCG
* * *
121772497 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTTAAATCG
121772537 CACACTAAGTGCCA
1 CACACTAAGTGCCA
121772551 CAAATAACTG
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTTAAATCG
Found at i:121773050 original size:20 final size:20
Alignment explanation
Indices: 121773015--121773057 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
121773005 AAAAGCTATT
121773015 AATCTAACATTAAACCATCCA
1 AATCTAACATTAAACCAT-CA
*
121773036 AATCTATCA-TAAACCATCA
1 AATCTAACATTAAACCATCA
121773055 AAT
1 AAT
121773058 TACTCAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 8 0.38
21 8 0.38
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
AATCTAACATTAAACCATCA
Found at i:121782626 original size:24 final size:24
Alignment explanation
Indices: 121782597--121782706 Score: 148
Period size: 24 Copynumber: 4.6 Consensus size: 24
121782587 AGGAAATTCA
* *
121782597 CACACATAGTGCCATGCTAACCCG
1 CACACATAGTGCCATGCAAATCCG
* * *
121782621 CACACATAGTGCCTTGCTAATCCA
1 CACACATAGTGCCATGCAAATCCG
* *
121782645 CACACATAATGCCATTCAAATCCG
1 CACACATAGTGCCATGCAAATCCG
*
121782669 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATGCAAATCCG
121782693 CACACATAGTGCCA
1 CACACATAGTGCCA
121782707 ATGTCATTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.33, C:0.35, G:0.13, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATGCAAATCCG
Found at i:121783302 original size:2 final size:2
Alignment explanation
Indices: 121783295--121783323 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121783285 CTTCAATAAA
121783295 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
121783324 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:121784074 original size:17 final size:17
Alignment explanation
Indices: 121784052--121784085 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
121784042 CCCCACTTAA
*
121784052 TATATTACAACTTATTT
1 TATATTACAACATATTT
*
121784069 TATATTATAACATATTT
1 TATATTACAACATATTT
121784086 CAAATATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTACAACATATTT
Found at i:121802843 original size:28 final size:28
Alignment explanation
Indices: 121802797--121802865 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
121802787 TTTAAAACCC
*
121802797 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
121802824 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
121802852 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
121802866 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:121804517 original size:20 final size:20
Alignment explanation
Indices: 121804494--121804531 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
121804484 CACATCCAAA
*
121804494 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
121804514 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
121804532 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:121809068 original size:29 final size:29
Alignment explanation
Indices: 121809035--121809108 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
121809025 CCTTCGAGCT
121809035 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
121809064 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
121809093 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
121809109 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:121809069 original size:58 final size:58
Alignment explanation
Indices: 121808976--121809108 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
121808966 ATACTCGATT
* * * * *
121808976 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
121809034 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
121809092 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
121809109 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:121816940 original size:29 final size:29
Alignment explanation
Indices: 121816907--121816980 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
121816897 CCTTCGAGCT
121816907 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
121816936 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
121816965 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
121816981 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:121816941 original size:58 final size:58
Alignment explanation
Indices: 121816848--121816980 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
121816838 ATACTCGATT
* * * * *
121816848 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
121816906 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
121816964 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
121816981 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:121821590 original size:46 final size:46
Alignment explanation
Indices: 121821540--121821665 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
121821530 TGGTTGAGCA
*
121821540 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
121821586 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
121821632 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
121821666 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:121833085 original size:46 final size:46
Alignment explanation
Indices: 121832924--121833096 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
121832914 AACCCGCCCC
* ** * *
121832924 TAAGTGAACTCGGACTCAAATCAATGAGCTCAGG-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTC-GGACATTTGCATCCA
* * * *
121832970 TAAGTGAACTCGGACTCAACTCAACAATTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA---C-ATTTGCATCCA
* * *
121833018 TCA-CGAACTCGGACCCAACTCAACAAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCA
*
121833063 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
121833097 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 4 0.04
46 53 0.54
47 27 0.27
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCA
Found at i:121833557 original size:30 final size:30
Alignment explanation
Indices: 121833523--121833582 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
121833513 ATTTAATACG
121833523 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* * * *
121833553 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
121833583 CGCTCGGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:121838721 original size:20 final size:20
Alignment explanation
Indices: 121838696--121838762 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
121838686 ATTTTGATAT
121838696 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATAC
* *
121838716 ACATGATATGTACGATAGAC
1 ACATGATATGTATGATATAC
*
121838736 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATAC
121838756 ACATGAT
1 ACATGAT
121838763 GTATTCCTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATAC
Found at i:121838841 original size:26 final size:24
Alignment explanation
Indices: 121838813--121838882 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
121838803 AGGAAGTGCA
*
121838813 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
121838837 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTACC
121838863 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
121838883 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 12 0.29
25 16 0.38
26 14 0.33
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:121841746 original size:49 final size:49
Alignment explanation
Indices: 121841674--121841850 Score: 230
Period size: 49 Copynumber: 3.6 Consensus size: 49
121841664 TGAGGTCACG
121841674 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
* ** * * *
121841723 TGTGTAGTACTAAGTGCTGGCTACTATGCATACCCGATAACTTTGAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTGGTTGCA
* * *
121841772 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
*
121841823 TGTGTAGTACTCAGTGCAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
121841851 CGTATTAGAT
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 64 0.60
50 7 0.07
51 36 0.34
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCA
Found at i:121841845 original size:100 final size:100
Alignment explanation
Indices: 121841669--121841851 Score: 321
Period size: 100 Copynumber: 1.8 Consensus size: 100
121841659 TATTGTGAGG
* * *
121841669 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
*
121841734 AAGTGCTGGCTACTATGCATACCCGATAACTTTGA
66 AAGTGCAGGCTACTATGCATACCCGATAACTTTGA
121841769 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
*
121841834 CAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
121841852 GTATTAGATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCGATAACTTTGA
Found at i:121841891 original size:100 final size:100
Alignment explanation
Indices: 121841684--121841894 Score: 255
Period size: 100 Copynumber: 2.1 Consensus size: 100
121841674 TGTGTAGTAC
* * * *
121841684 TAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCATGTGTAGTACTAAGTGCTGGCTACTA
1 TAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
* * * * *
121841749 TGCATACCCGATAACTTTGATCACGTGTGTAGTAC
66 TGCATACCAGATAACTTTGATCAAGTATGTAGAAA
*
121841784 TAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACTCAGTGCAGGCTACTA
1 TAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
* ** *
121841849 TGCGTATTAGATAACTTTGGCTACAAGTATG-A-AAA
66 TGCATACCAGATAACTTT-GAT-CAAGTATGTAGAAA
*
121841884 TATGTGCAGGC
1 TAAGTGCAGGC
121841895 AACTGAGTAT
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
100 85 0.90
101 3 0.03
102 6 0.06
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
TGCATACCAGATAACTTTGATCAAGTATGTAGAAA
Found at i:121846748 original size:48 final size:48
Alignment explanation
Indices: 121846679--121846897 Score: 267
Period size: 48 Copynumber: 4.6 Consensus size: 48
121846669 CTTAGGTACC
* * * *
121846679 AATATCATGGCCTGAAACCAAATCAACAAAGCTCACACCTGAAGTGCT
1 AATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
* * * *
121846727 AATTTCATGGCCCAAAGCCAAATCAATGAAGCTCGCACCCGAAGTGCT
1 AATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
* * * * * *
121846775 AATATCATGGCCTGAGGCCAAATCAATGAAGCACATACCCGAAGTGCA
1 AATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
* * * *
121846823 AATATCATGACCCGAAGCCAAATTAATAAAGCTCGCACCTGAAGTGCT
1 AATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
*
121846871 AATATCATGGCCTGAAGCCAAATCAAT
1 AATATCATGGCCCGAAGCCAAATCAAT
121846898 GAAGTCCTAA
Statistics
Matches: 142, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 142 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.19
Consensus pattern (48 bp):
AATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACCCGAAGTGCT
Found at i:121846831 original size:96 final size:96
Alignment explanation
Indices: 121846679--121846901 Score: 320
Period size: 96 Copynumber: 2.3 Consensus size: 96
121846669 CTTAGGTACC
* ** * * * * *
121846679 AATATCATGGCCTGAAACCAAATCAACAAAGCTCACACCTGAAGTGCTAATTTCATGGCCCAAAG
1 AATATCATGGCCTGAAGCCAAATCAATGAAGCACACACCCGAAGTGCAAATATCATGACCCAAAG
*
121846744 CCAAATCAATGAAGCTCGCACCCGAAGTGCT
66 CCAAATCAATAAAGCTCGCACCCGAAGTGCT
* * *
121846775 AATATCATGGCCTGAGGCCAAATCAATGAAGCACATACCCGAAGTGCAAATATCATGACCCGAAG
1 AATATCATGGCCTGAAGCCAAATCAATGAAGCACACACCCGAAGTGCAAATATCATGACCCAAAG
* *
121846840 CCAAATTAATAAAGCTCGCACCTGAAGTGCT
66 CCAAATCAATAAAGCTCGCACCCGAAGTGCT
121846871 AATATCATGGCCTGAAGCCAAATCAATGAAG
1 AATATCATGGCCTGAAGCCAAATCAATGAAG
121846902 TCCTAATGAC
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 112 1.00
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.19
Consensus pattern (96 bp):
AATATCATGGCCTGAAGCCAAATCAATGAAGCACACACCCGAAGTGCAAATATCATGACCCAAAG
CCAAATCAATAAAGCTCGCACCCGAAGTGCT
Found at i:121847478 original size:21 final size:20
Alignment explanation
Indices: 121847450--121847488 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
121847440 CAAAACTTGT
*
121847450 ATAACTATCATCAAACATTC
1 ATAACTATCACCAAACATTC
121847470 ATAATCTATCACCAAACAT
1 ATAA-CTATCACCAAACAT
121847489 CAAAATACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAACTATCACCAAACATTC
Found at i:121855245 original size:47 final size:46
Alignment explanation
Indices: 121855178--121855438 Score: 216
Period size: 47 Copynumber: 5.6 Consensus size: 46
121855168 GTGCCAATGC
* *
121855178 CATGTCCCAGACACGATCTTACATTAGCTCTTATCTCATGTC-GATG
1 CATGTCCCAGACATG-TCTTACACTAGCTCTTATCTCATGTCTGATG
* *
121855224 CCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCATAG-CTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTCTTATCTCAT-GTCTGATG
* * * *
121855272 CATGTCCCAGACATGTCTTACACT-G-GCTTACGTCTCAAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTA--TCTCATGTCTGATG
* **
121855318 CATGTCCCAGACATGTCTTACACTAGCAC-TAGTCTCGATG-CCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTA-TCTC-ATGTCTGATG
* * *
121855364 CCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTTATCTCATGT--CTGATG
121855412 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
121855439 CCACAATAAC
Statistics
Matches: 179, Mismatches: 19, Indels: 33
0.77 0.08 0.14
Matches are distributed among these distances:
44 2 0.01
45 4 0.02
46 69 0.39
47 79 0.44
48 24 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCATGTCTGATG
Found at i:121855308 original size:46 final size:45
Alignment explanation
Indices: 121855220--121855435 Score: 208
Period size: 46 Copynumber: 4.6 Consensus size: 45
121855210 ATCTCATGTC
* *
121855220 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCATAGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-CGTCTCATAGCT
121855268 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCA-AGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACGTCTCATA-GCT
* * *
121855314 AATGCATGTCCCAGACATGTCTTACACTAGC-ACTAGTCTCGAT-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTAC--GTCTC-ATAGCT
* * *
121855360 AATGCCATGTCCCAGACATGGTCTTACACTGGCT-C-TCATAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTACGTC-TCA--TAGCT
121855408 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
121855436 AGCCCACAAT
Statistics
Matches: 146, Mismatches: 9, Indels: 28
0.80 0.05 0.15
Matches are distributed among these distances:
44 2 0.01
45 4 0.03
46 72 0.49
47 46 0.32
48 22 0.15
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTACGTCTCATAGCT
Found at i:121855424 original size:94 final size:95
Alignment explanation
Indices: 121855169--121855438 Score: 269
Period size: 94 Copynumber: 2.9 Consensus size: 95
121855159 GTGGGTAAGG
* * * * * *
121855169 TGCCAATGCCATGTCCCAGACACGATCTTACATTAGCTCTTATCTCATGT--C-GATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TAATGTGGCTGATG-CATGTC
121855231 CCAGACATGGTCTTACACT-G-ACTATCATCTCA
63 CCAGACAT-GTCTTACACTAGCACTATCATCTCA
** *
121855263 TAGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCAA---GGCTAATGCATG
1 T-GCCAATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCAT-AATGTGGCTGATGCATG
*
121855322 TCCCAGACATGTCTTACACTAGCACTAGTC-TC-GA
61 TCCCAGACATGTCTTACACTAGCACTA-TCATCTCA
121855356 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
121855421 GACATGTCTTACACTAGC
66 GACATGTCTTACACTAGC
121855439 CCACAATAAC
Statistics
Matches: 146, Mismatches: 13, Indels: 34
0.76 0.07 0.18
Matches are distributed among these distances:
91 4 0.03
92 17 0.12
93 44 0.30
94 72 0.49
95 8 0.05
96 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (95 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTATCATCTCA
Found at i:121855430 original size:140 final size:141
Alignment explanation
Indices: 121855173--121855435 Score: 381
Period size: 140 Copynumber: 1.9 Consensus size: 141
121855163 GTAAGGTGCC
* * * *
121855173 AATGCCATGTCCCAGACACGATCTTACATTAGCTCTTATCTCATGTCGATGCCATGTCCCAGACA
1 AATGCCATGTCCCAGACACGATCTTACACTAGCACTTATCTCATGCCAATGCCATGTCCCAGACA
*
121855238 TGGTCTTACACTGACTATCATCTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACTATCATATCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
121855303 GTCTCAAGGCT
131 GTCTCAAGGCT
*
121855314 AATG-CATGTCCCAGACATG-TCTTACACTAGCAC-TAGTCTCGATGCCAATGCCATGTCCCAGA
1 AATGCCATGTCCCAGACACGATCTTACACTAGCACTTA-TCTC-ATGCCAATGCCATGTCCCAGA
* * * *
121855376 CATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACT
64 CATGGTCTTACACTGACTATCAT-ATCATAGCTGATGCATGTCCCAGACATGTCTTACACT
121855436 AGCCCACAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
138 2 0.02
139 16 0.15
140 86 0.79
141 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (141 bp):
AATGCCATGTCCCAGACACGATCTTACACTAGCACTTATCTCATGCCAATGCCATGTCCCAGACA
TGGTCTTACACTGACTATCATATCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
GTCTCAAGGCT
Found at i:121855817 original size:30 final size:30
Alignment explanation
Indices: 121855777--121855834 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
121855767 AATTCATATT
* *
121855777 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGATAAAATGACCATTTTACCCCTAGAC
121855807 TTTGATAAAATGACCATTTTACCCCTAG
1 TTTGATAAAATGACCATTTTACCCCTAG
121855835 GCCCAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (30 bp):
TTTGATAAAATGACCATTTTACCCCTAGAC
Found at i:121860674 original size:46 final size:47
Alignment explanation
Indices: 121860623--121860846 Score: 225
Period size: 47 Copynumber: 4.8 Consensus size: 47
121860613 ATGGTTGAGC
121860623 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* * *
121860670 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
* * *
121860715 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
121860762 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--G
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* *
121860810 -CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
121860847 GCGGGTTACA
Statistics
Matches: 159, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 3 0.02
46 63 0.40
47 76 0.48
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG
Found at i:121860739 original size:47 final size:47
Alignment explanation
Indices: 121860621--121860792 Score: 246
Period size: 47 Copynumber: 3.7 Consensus size: 47
121860611 GGATGGTTGA
* * *
121860621 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
121860669 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
121860714 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
121860761 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
121860793 ACTTATGGAT
Statistics
Matches: 116, Mismatches: 3, Indels: 11
0.89 0.02 0.08
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 29 0.25
47 76 0.66
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:121868290 original size:46 final size:47
Alignment explanation
Indices: 121868239--121868462 Score: 225
Period size: 47 Copynumber: 4.8 Consensus size: 47
121868229 ATGGTTGAGC
121868239 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* * *
121868286 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
* * *
121868331 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
121868378 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* *
121868425 ACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
121868463 GCGGGTTACA
Statistics
Matches: 159, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 3 0.02
46 64 0.40
47 76 0.48
48 2 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG
Found at i:121868355 original size:47 final size:47
Alignment explanation
Indices: 121868237--121868408 Score: 246
Period size: 47 Copynumber: 3.7 Consensus size: 47
121868227 GGATGGTTGA
* * *
121868237 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
121868285 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
121868330 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
121868377 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
121868409 ACTTATGGAT
Statistics
Matches: 116, Mismatches: 3, Indels: 11
0.89 0.02 0.08
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 29 0.25
47 76 0.66
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:121874020 original size:29 final size:29
Alignment explanation
Indices: 121873932--121874023 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
121873922 TGCCTGTATC
* * *
121873932 TGGCCCATTAAGCCC-AATCAAATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
121873960 TGACCC-TTCAGGCCCAAATCACCTATATA
1 TGGCCCATT-AGGCCCAAATCACATTTATA
121873989 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
121874018 TGGCCC
1 TGGCCC
121874024 GTTGGGCCTA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
27 2 0.04
28 10 0.19
29 38 0.73
30 2 0.04
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:121874320 original size:16 final size:16
Alignment explanation
Indices: 121874258--121874310 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
121874248 ATAGCCAAAC
121874258 TTTCGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
121874274 TTTCGGCTTTTC-AGCA
1 TTTCGGCTTTTCGA-CA
* *
121874290 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCGACA
121874306 TTTCG
1 TTTCG
121874311 ACATTTCGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 1 0.03
16 31 0.97
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.45
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:121876238 original size:2 final size:2
Alignment explanation
Indices: 121876231--121876264 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
121876221 AAGAGTGAGC
121876231 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121876265 GAGATATGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121880951 original size:28 final size:26
Alignment explanation
Indices: 121880911--121881009 Score: 108
Period size: 28 Copynumber: 3.6 Consensus size: 26
121880901 TCACAAATTG
*
121880911 GCACTAAGTGTGCGGTTCAAATTATACA
1 GCACTAAGTGTGCGGTTC-GATTATA-A
* *
121880939 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGC-GGTTCGATTATA-A
*
121880967 GCACTAAGTGTGCGAGTTCGACTATTAA
1 GCACTAAGTGTGCG-GTTCGATTA-TAA
121880995 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
121881010 GCTTATTGCA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 1 0.02
28 55 0.90
29 5 0.08
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGGTTCGATTATAA
Found at i:121885285 original size:124 final size:124
Alignment explanation
Indices: 121885063--121885287 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
121885053 GAATTATGTG
* * * * * * *
121885063 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
121885128 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
121885187 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
121885252 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
121885288 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:121885409 original size:40 final size:40
Alignment explanation
Indices: 121885282--121885411 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
121885272 TTGCTGGAAA
* * *
121885282 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * *
121885322 CTACATCCGGGCCAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* **
121885362 TTCTATCCGGGCTAAGACTTGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
121885402 TTATATCCGG
1 TTATATCCGG
121885412 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 4 0.05
40 69 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:121894360 original size:40 final size:40
Alignment explanation
Indices: 121894233--121894362 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
121894223 ATGCTGGAAA
* *
121894233 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
121894273 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
121894313 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
121894353 TTATATCCGG
1 TTATATCCGG
121894363 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:121902805 original size:45 final size:46
Alignment explanation
Indices: 121902741--121902827 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 46
121902731 GACTCACCAT
121902741 AGCTCATATGAGCTTACTG-TTTCAGCTCGAA-AGAGCTTACTATTC
1 AGCTCATATGAGCTTACTGTTTTCAGCTC-AATAGAGCTTACTATTC
121902786 AGCTCA-ATAGAGCTTACTGTTTTCAGCTCAATAGAGCTTACT
1 AGCTCATAT-GAGCTTACTGTTTTCAGCTCAATAGAGCTTACT
121902828 GTTATCAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
44 2 0.05
45 18 0.46
46 19 0.49
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (46 bp):
AGCTCATATGAGCTTACTGTTTTCAGCTCAATAGAGCTTACTATTC
Found at i:121902815 original size:24 final size:24
Alignment explanation
Indices: 121902741--121902852 Score: 119
Period size: 24 Copynumber: 4.8 Consensus size: 24
121902731 GACTCACCAT
121902741 AGCTC-ATATGAGCTTACTG-TTTC
1 AGCTCAATA-GAGCTTACTGTTTTC
*
121902764 AGCTCGAA-AGAGCTTAC--TATTC
1 AGCTC-AATAGAGCTTACTGTTTTC
121902786 AGCTCAATAGAGCTTACTGTTTTC
1 AGCTCAATAGAGCTTACTGTTTTC
*
121902810 AGCTCAATAGAGCTTACTGTTATC
1 AGCTCAATAGAGCTTACTGTTTTC
*
121902834 AACTC-ATGAAGAGCTTACT
1 AGCTCAAT--AGAGCTTACT
121902853 CGCCATGTCT
Statistics
Matches: 77, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
21 2 0.03
22 17 0.22
23 15 0.19
24 32 0.42
25 11 0.14
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (24 bp):
AGCTCAATAGAGCTTACTGTTTTC
Found at i:121908743 original size:24 final size:24
Alignment explanation
Indices: 121908716--121908768 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
121908706 ACTAATATCT
121908716 ATATCTATTTCATTCCATAATTGA
1 ATATCTATTTCATTCCATAATTGA
121908740 ATATCTATTTCATTCCATAATTGA
1 ATATCTATTTCATTCCATAATTGA
121908764 ATATC
1 ATATC
121908769 AACACTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.04, T:0.45
Consensus pattern (24 bp):
ATATCTATTTCATTCCATAATTGA
Found at i:121908745 original size:30 final size:29
Alignment explanation
Indices: 121908709--121908769 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 29
121908699 GAAATAAACT
121908709 AATATCTATATCTATTTCATTCCATAATTG
1 AATATC-ATATCTATTTCATTCCATAATTG
121908739 ---A--ATATCTATTTCATTCCATAATTG
1 AATATCATATCTATTTCATTCCATAATTG
121908763 AATATCA
1 AATATCA
121908770 ACACTTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 11
0.70 0.00 0.30
Matches are distributed among these distances:
24 23 0.88
27 2 0.08
29 1 0.04
ACGTcount: A:0.36, C:0.16, G:0.03, T:0.44
Consensus pattern (29 bp):
AATATCATATCTATTTCATTCCATAATTG
Found at i:121909871 original size:43 final size:43
Alignment explanation
Indices: 121909788--121909930 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 43
121909778 ATTTTTTACA
* * * * ** * *
121909788 ATGCCAACGTCCCTGATGTTGTCTAACATGTAATCTCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAACACATATCG
* * *
121909831 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCTTAAACACATATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACATAAACACATATCG
* * * *
121909874 ATGCCAACATCCCAGGCGTTGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAAACACATATCG
121909917 ATGCCAACGTCCCA
1 ATGCCAACGTCCCA
121909931 AATGTGGCCT
Statistics
Matches: 78, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
42 3 0.04
43 72 0.92
44 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAAACACATATCG
Found at i:121915079 original size:199 final size:196
Alignment explanation
Indices: 121914714--121915128 Score: 708
Period size: 199 Copynumber: 2.1 Consensus size: 196
121914704 AATGTGCAAG
121914714 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATA
121914779 TATATGTGATAAGGCCTAATGGCCGAGTGATGAATGTGAAAATGTATATATATGTGTGATAAGGC
64 TATATGTGATAAGGCCTAATGGCCGAGTGATGAATGTGAAAATGTATATATA-GTGTGATAAGGC
*
121914844 CTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGATGT
128 CTAATGGCCGATGTGATGAATGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGACGT
121914909 GATGAA
191 GATGAA
* *
121914915 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTGTATA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATA
*
121914980 TATGTGATAAGGCCTAATGGCCGA-TGGATGAATGTGAAAGTGTATATATA-TGTGATAAGGCCT
66 TATGTGATAAGGCCTAATGGCCGAGT-GATGAATGTGAAAATGTATATATAGTGTGATAAGGCCT
121915043 AATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATG
130 AATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATG
121915108 AA
195 AA
* *
121915110 TATGAAAGTGTATATATAT
1 TGTGAAAATGTATATATAT
121915129 ATATGTGGTA
Statistics
Matches: 207, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
195 47 0.23
197 49 0.24
198 1 0.00
199 92 0.44
201 18 0.09
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (196 bp):
TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATATA
TATGTGATAAGGCCTAATGGCCGAGTGATGAATGTGAAAATGTATATATAGTGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
A
Found at i:121915129 original size:51 final size:49
Alignment explanation
Indices: 121914714--121915128 Score: 708
Period size: 49 Copynumber: 8.4 Consensus size: 49
121914704 AATGTGCAAG
*
121914714 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAA
121914765 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGA-GTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
121914813 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAA
121914864 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAA
121914915 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121914964 TGTGAAAATGTGTATATATGTGATAAGGCCTAATGGCCGATG-GATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121915012 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121915061 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
121915110 TATGAAAGTGTATATATAT
1 TGTGAAAATGTATATATAT
121915129 ATATGTGGTA
Statistics
Matches: 353, Mismatches: 7, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
48 72 0.20
49 164 0.46
50 22 0.06
51 95 0.27
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:121915253 original size:37 final size:36
Alignment explanation
Indices: 121915198--121915284 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
121915188 AAACTTGGAA
*
121915198 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACCACGTGTGGAGAT
121915236 TATGTCCGGGTACGACCCGATGACCACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACCACGTGTGGAGAT
121915273 TATGTCCGGGTA
1 TATGTCCGGGTA
121915285 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACCACGTGTGGAGAT
Found at i:121917206 original size:40 final size:40
Alignment explanation
Indices: 121917162--121917473 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
121917152 GAGAATTGAG
*
121917162 AATGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
121917202 AATGATATATTCGGGCTAAATTCCAAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
121917242 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
121917282 AATGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
121917322 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
121917362 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
121917402 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
121917442 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCA
121917474 ATCATGCTGG
Statistics
Matches: 251, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 251 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:121921142 original size:49 final size:49
Alignment explanation
Indices: 121920906--121921320 Score: 690
Period size: 49 Copynumber: 8.4 Consensus size: 49
121920896 AATGTGCAAG
*
121920906 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAA
121920957 T-TGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121921005 TGTGAAAATGTATGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTA--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
121921056 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121921107 TGTGAAAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121921156 TGTGAAAATGTGTATATATGTGATAAGGCCTAATGGCCGATG-GATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121921204 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
121921253 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
121921302 TATGAAAGTGTATATATAT
1 TGTGAAAATGTATATATAT
121921321 ATGTGGTAAA
Statistics
Matches: 348, Mismatches: 10, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
48 77 0.22
49 158 0.45
50 16 0.05
51 97 0.28
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:121921443 original size:37 final size:36
Alignment explanation
Indices: 121921388--121921474 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
121921378 AAACTTGGAA
*
121921388 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACCACGTGTGGAGAT
121921426 TATGTCCGGGTACGACCCGATGACCACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACCACGTGTGGAGAT
121921463 TATGTCCGGGTA
1 TATGTCCGGGTA
121921475 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACCACGTGTGGAGAT
Found at i:121923401 original size:40 final size:40
Alignment explanation
Indices: 121923357--121923668 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
121923347 GAGAATTGAG
121923357 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
121923397 AATGATATATCCGGGCTAAATTCCGAAGAGTATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
121923437 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
121923477 AATGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
121923517 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
121923557 AATGATGTATCCGGACTACGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
121923597 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
121923637 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCA
121923669 ATCATGCTGG
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:121925135 original size:40 final size:40
Alignment explanation
Indices: 121925090--121925219 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
121925080 CGGAATACAA
121925090 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
121925130 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
121925170 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
121925210 CCGGATATAA
1 CCGGATATAA
121925220 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:121932703 original size:40 final size:40
Alignment explanation
Indices: 121932658--121932787 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
121932648 CGGAATACAA
121932658 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
121932698 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
121932738 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
121932778 CCGGATATAA
1 CCGGATATAA
121932788 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:121938103 original size:32 final size:33
Alignment explanation
Indices: 121938039--121938104 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
121938029 AATGGCCGAC
121938039 GTGATGAATGTGAAAATGTATATATATGTGTGAT
1 GTGATGAATGTGAAAATGTATATATA-GTGTGAT
*
121938073 GTGATGAATGTGAAAATGTGTATATA-TGTGAT
1 GTGATGAATGTGAAAATGTATATATAGTGTGAT
121938105 AAGGCCTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 6 0.19
34 25 0.81
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (33 bp):
GTGATGAATGTGAAAATGTATATATAGTGTGAT
Found at i:121938248 original size:51 final size:49
Alignment explanation
Indices: 121938070--121938246 Score: 291
Period size: 49 Copynumber: 3.6 Consensus size: 49
121938060 ATATATGTGT
* *
121938070 GATGTGATGAATGTGAAAATGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
*
121938119 GATGGGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* *
121938168 GATGTGATGAATGTGAAAATGTATATATATATGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* *
121938217 GACGTGATGAATATGAAAGTGTATATATAT
1 GATGTGATGAATGTGAAAGTGTATATATAT
121938247 ATGTGGTAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 119 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:121938266 original size:51 final size:51
Alignment explanation
Indices: 121938070--121938266 Score: 271
Period size: 49 Copynumber: 4.0 Consensus size: 51
121938060 ATATATGTGT
* *
121938070 GATGTGATGAATGTGAAAATG--TGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCC
*
121938119 GATGGGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCC
*
121938168 GATGTGATGAATGTGAAAATGTATATATATA--TGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCC
* * * * *
121938217 GACGTGATGAATATGAAAGTGTATATATATATGTGGTAAAGCCGAATGGC
1 GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
121938267 TAATGTGAAT
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
49 111 0.83
51 22 0.17
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (51 bp):
GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCC
Found at i:121938370 original size:37 final size:36
Alignment explanation
Indices: 121938315--121938401 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
121938305 AACTTGGGAA
*
121938315 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACCACGTGTGGAGAT
121938353 TATGTCCGGGTACGACCCGATGACCACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACCACGTGTGGAGAT
121938390 TATGTCCGGGTA
1 TATGTCCGGGTA
121938402 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACCACGTGTGGAGAT
Found at i:121942713 original size:50 final size:48
Alignment explanation
Indices: 121942594--121942822 Score: 230
Period size: 50 Copynumber: 4.7 Consensus size: 48
121942584 TGATATGTGT
* * * **
121942594 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAAGATGAGA
* * * * * *
121942640 GCCAATGTAAAACCATGTCTGGGACATGGCATTAGCCTCAAGACCTGAAA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAAGA--TGAGA
* * *
121942690 GCTAGTGTAAGACCATGTTTGGGACATGGTATCGGCATCGACAGATGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTC-A-AGATGAGA
* *
121942740 GCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTCTC-AGTATGTGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAAG-A--TGAGA
121942790 GCTAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATC
121942823 GACTTCGATG
Statistics
Matches: 150, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
46 9 0.06
47 16 0.11
48 11 0.07
50 110 0.73
51 1 0.01
52 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAAGATGAGA
Found at i:121942838 original size:100 final size:100
Alignment explanation
Indices: 121942594--121942866 Score: 312
Period size: 100 Copynumber: 2.8 Consensus size: 100
121942584 TGATATGTGT
* * *
121942594 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-C-AT-TATGAGAGCCAATGTAAAACC
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATCGATGTATGAGAGCCAGTGTAAGACC
*
121942654 ATGTCTGGGACATGGCATTAGCCTCAAGACCTGAAA
65 ATGTCTGGGACATGGCATCAGCCTCAAGACCTGAAA
* *
121942690 GCTAGTGTAAGACCATGTTTGGGACATGGTATCGGCATCGACAG-ATGAGAGCCAGTGTAAGACC
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGA-TGTATGAGAGCCAGTGTAAGACC
* * ** *
121942754 ATGTTTGGGACATGGCATCAGTCTC-AGTATGTGAGA
65 ATGTCTGGGACATGGCATCAGCCTCAAG-ACCTGAAA
* * * *
121942790 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGACTTCGATGTAT--GAGCCAGTATAAGACAA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATGTATGAGAGCCAGTGTAAGACCA
*
121942853 TGTCTGGGATATGG
66 TGTCTGGGACATGG
121942867 TGTCTGTATC
Statistics
Matches: 150, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
96 12 0.08
97 15 0.10
98 34 0.23
99 4 0.03
100 85 0.57
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (100 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGATGTATGAGAGCCAGTGTAAGACCA
TGTCTGGGACATGGCATCAGCCTCAAGACCTGAAA
Found at i:121950931 original size:40 final size:40
Alignment explanation
Indices: 121950887--121951015 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
121950877 TGCTGGAAAT
* * *
121950887 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
121950927 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * * *
121950967 TCTATCTGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
121951007 TATATCCGG
1 TATATCCGG
121951016 TTATATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 69 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:121964262 original size:28 final size:28
Alignment explanation
Indices: 121964197--121964297 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
121964187 ATAGTGAATC
*
121964197 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
121964226 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
121964254 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
121964284 CGCACACTTAGTGC
1 CGCACACTTAGTGC
121964298 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:121971569 original size:20 final size:20
Alignment explanation
Indices: 121971544--121971588 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
121971534 AGGGACTAAA
* *
121971544 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
121971564 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
121971584 ATGAA
1 ATGAA
121971589 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:121972400 original size:53 final size:53
Alignment explanation
Indices: 121972320--121972473 Score: 254
Period size: 53 Copynumber: 2.9 Consensus size: 53
121972310 TGGTTAAGTG
* *
121972320 CCCTAATGGATACCCTTGAAAAAGGAATTGACAGATTATTAAATCATAAGCTT
1 CCCTAATGGGTACCCTTGAAAAAGGAATTGACGGATTATTAAATCATAAGCTT
* *
121972373 CCCTAATGGGTACCCTTGAAAAAGGAATTGGCGGATTATTAAATCATATGCTT
1 CCCTAATGGGTACCCTTGAAAAAGGAATTGACGGATTATTAAATCATAAGCTT
* *
121972426 CCCTAATGGGTACGCTTGAAAAAGGAATTGACGGATTATTGAATCATA
1 CCCTAATGGGTACCCTTGAAAAAGGAATTGACGGATTATTAAATCATA
121972474 CACTTCGAGT
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 94 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (53 bp):
CCCTAATGGGTACCCTTGAAAAAGGAATTGACGGATTATTAAATCATAAGCTT
Found at i:121973048 original size:12 final size:12
Alignment explanation
Indices: 121973031--121973060 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
121973021 TATGTGATAT
121973031 GTTATTGCTTAA
1 GTTATTGCTTAA
121973043 GTTATTGCTTAA
1 GTTATTGCTTAA
121973055 GTTATT
1 GTTATT
121973061 CCAAAGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.07, G:0.17, T:0.53
Consensus pattern (12 bp):
GTTATTGCTTAA
Found at i:121976082 original size:27 final size:27
Alignment explanation
Indices: 121976052--121976110 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
121976042 AAATAGGAGG
**
121976052 ATTAACACCTTGAACATTTGGATTATC
1 ATTAACACCAAGAACATTTGGATTATC
*
121976079 ATTAACACCAAGACCATTTGGATTATC
1 ATTAACACCAAGAACATTTGGATTATC
121976106 ATTAA
1 ATTAA
121976111 GACTAGGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (27 bp):
ATTAACACCAAGAACATTTGGATTATC
Found at i:121979292 original size:46 final size:45
Alignment explanation
Indices: 121979239--121979404 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 45
121979229 TTTGGGCATC
121979239 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
** * *
121979284 CTGAACTCGTTGAGTTGAGTCCGAGTTCGTA-AAATGTAACTAG-GCAT-T
1 C-GAACTCGTTGAGTTGAGTCCGAGTTC--ACTTATG-GA-T-GCGAATGT
* * * *
121979332 CAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-T
* *
121979378 CGACCTCGTTGAGTTGAGTCTGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
121979405 GCTTGTGGGC
Statistics
Matches: 95, Mismatches: 16, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 52 0.55
47 27 0.28
48 4 0.04
49 4 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
Found at i:121982025 original size:43 final size:44
Alignment explanation
Indices: 121981950--121982060 Score: 118
Period size: 43 Copynumber: 2.5 Consensus size: 44
121981940 TGTCGATGAC
* * * *
121981950 ATGTCCCAGAAAGGGCATACACTGACAC-ACCTCAAGCCAATGCA
1 ATGTCCCAGACAGGTCTTACACTAAC-CTACCTCAAGCCAATGCA
* ** *
121981994 ATGTCCCAGACAGGT-TTACACTAACCTACCTCGAGCTGATGCC
1 ATGTCCCAGACAGGTCTTACACTAACCTACCTCAAGCCAATGCA
*
121982037 ATGTCCCAGATAGGTCTTACACTA
1 ATGTCCCAGACAGGTCTTACACTA
121982061 GATCTCATCT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 34 0.61
44 21 0.38
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (44 bp):
ATGTCCCAGACAGGTCTTACACTAACCTACCTCAAGCCAATGCA
Found at i:121982109 original size:49 final size:47
Alignment explanation
Indices: 121981818--121982110 Score: 174
Period size: 49 Copynumber: 6.3 Consensus size: 47
121981808 TCCAAACATT
* * * *
121981818 GTCTTACACTGGCTCTCAC-ATCTAAGTCGATGCCATGTCCCAGACAG
1 GTCTTACACTAGATCTCACTAT-TGAGCCGATGCCATGTCCCAGACAG
* * * *
121981865 GTCTTACACTAGCT-TC-CATACATCGAGGCCAATGTCATGTCCCAGACAG
1 GTCTTACACTAGATCTCAC-T--ATTGA-GCCGATGCCATGTCCCAGACAG
* * * * * *
121981914 GTCTTACACTGGCTCTCACTTATCTGTGTCGATGACATGTCCCAGAAAG
1 GTCTTACACTAGATCTCAC-TAT-TGAGCCGATGCCATGTCCCAGACAG
* * * * ** * *
121981963 GGCATACACT-GA-CACAC-CTCAAGCCAATGCAATGTCCCAGACAG
1 GTCTTACACTAGATCTCACTATTGAGCCGATGCCATGTCCCAGACAG
* * * * *
121982007 GT-TTACACTA-ACCT-AC-CTCGAGCTGATGCCATGTCCCAGATAG
1 GTCTTACACTAGATCTCACTATTGAGCCGATGCCATGTCCCAGACAG
* *
121982050 GTCTTACACTAGATCTCATCTATTGGTGCCGATGTCATGTCCCAGACAG
1 GTCTTACACTAGATCTCA-CTATT-GAGCCGATGCCATGTCCCAGACAG
121982099 GTCTTACACTAG
1 GTCTTACACTAG
121982111 CACATACTGT
Statistics
Matches: 188, Mismatches: 42, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
43 33 0.18
44 27 0.14
45 5 0.03
46 3 0.02
47 18 0.10
48 3 0.02
49 94 0.50
50 3 0.02
51 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GTCTTACACTAGATCTCACTATTGAGCCGATGCCATGTCCCAGACAG
Found at i:121983570 original size:40 final size:40
Alignment explanation
Indices: 121983512--121983666 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 40
121983502 TGTTCAAACA
* * * * *
121983512 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
121983552 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* * *
121983592 CCTTC-GGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGA-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
121983632 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
121983667 TTCATACACA
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 25 0.26
40 70 0.72
41 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:121987075 original size:122 final size:123
Alignment explanation
Indices: 121986802--121987138 Score: 577
Period size: 122 Copynumber: 2.7 Consensus size: 123
121986792 GAATTATGTG
*
121986802 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
**
121986867 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCAAGCCTTAGTAACGA
121986925 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
121986990 GCTAAGTCCC-AAGGCAATTATGCTAGTGATATGTTTGTGTTCAAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCAAGCCTTAGTAACGA
* * * * *
121987047 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
121987112 GCTAAGTCCCGAAGACATTTATGCTAG
66 GCTAAGTCCCGAAGGCAATTATGCTAG
121987139 AATTATATCC
Statistics
Matches: 203, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
122 115 0.57
123 88 0.43
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCAAGCCTTAGTAACGA
Found at i:121987201 original size:40 final size:39
Alignment explanation
Indices: 121987108--121987310 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 39
121987098 TGAATGATAC
* * * **
121987108 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTGTTATAT
* * * * *
121987147 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTG-TTATAT
121987187 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAG-TGTTATAT
121987227 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGT-GTTATAT
* * **
121987267 CCGGGCT-ATGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAT-ACCCGAAGGCATTTGTGCAAGT-GTTATAT
121987307 CCGG
1 CCGG
121987311 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 28 0.20
40 111 0.79
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTGTTATAT
Found at i:121994759 original size:40 final size:39
Alignment explanation
Indices: 121994701--121994854 Score: 173
Period size: 39 Copynumber: 3.9 Consensus size: 39
121994691 CGTTCAAACA
* * ** * *
121994701 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
121994741 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
121994781 CCTTCGGGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
121994820 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
121994855 TTCATACACA
Statistics
Matches: 97, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 57 0.59
40 40 0.41
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:121994812 original size:39 final size:39
Alignment explanation
Indices: 121994731--121994854 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
121994721 TATGGTAACC
*
121994731 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAACCCGGATATCACAACT
* * * *
121994771 CGCACAATTGCCTTCGGGTTTATCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
* *
121994810 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
121994849 CGCACA
1 CGCACA
121994855 TTCATACACA
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 57 0.77
40 17 0.23
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
Found at i:121998689 original size:40 final size:40
Alignment explanation
Indices: 121998640--121998848 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
121998630 TCTTCGGAAT
* * *
121998640 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
121998679 TTAACCCGGATTTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGA-TATAATCACTAGCACAAATGCCTTCGGGTC
* * *
121998720 TTAGCCCGGATATAA-CAACTCGCACGAATTCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
121998760 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
121998800 TTAGCCCGGATATAATCGCTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
121998840 TTAGCCCGG
1 TTAGCCCGG
121998849 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 108 0.76
41 32 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:122006597 original size:40 final size:40
Alignment explanation
Indices: 122006548--122006756 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
122006538 TCTTCGGAAT
* * *
122006548 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
122006587 TTAACCCGGATTTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGA-TATAATCACTAGCACAAATGCCTTCGGGTC
* *
122006628 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
122006668 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
122006708 TTAGCCCGGATATAATCGCTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
122006748 TTAGCCCGG
1 TTAGCCCGG
122006757 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 108 0.76
41 32 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:122013220 original size:40 final size:40
Alignment explanation
Indices: 122013165--122013347 Score: 276
Period size: 40 Copynumber: 4.6 Consensus size: 40
122013155 CGGATGATAA
* * *
122013165 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
122013205 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
122013245 CCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
122013285 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
122013325 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
122013348 CGAGTGAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:122013379 original size:80 final size:80
Alignment explanation
Indices: 122013165--122013383 Score: 255
Period size: 80 Copynumber: 2.7 Consensus size: 80
122013155 CGGATGATAA
* * * * * * *
122013165 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTTACTACATCCGGGCTAAATCCCGAAGGCAATTG
* *
122013230 TGCGGGTTATTATAT
66 TGCGAGTTACTATAT
* * *
122013245 CCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTTACTACATCCGGGCTAAATCCCGAAGGCAATTG
122013310 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * *
122013325 CCGGGCTATGTCCCGAAGGC-ATTCGAGTGAG-TAGCTACATCC-GGTTAAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCAATT-GAGCGAGTTA-CTACATCCGGGCT-AAATCCCGAAGG
122013384 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 8 0.07
80 113 0.93
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTGAGCGAGTTACTACATCCGGGCTAAATCCCGAAGGCAATTG
TGCGAGTTACTATAT
Found at i:122013383 original size:120 final size:120
Alignment explanation
Indices: 122013165--122013383 Score: 280
Period size: 120 Copynumber: 1.8 Consensus size: 120
122013155 CGGATGATAA
* * *
122013165 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGCGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCG
* * * * * *
122013230 TGCGGGTTATTATATCCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACTACAT
66 AGCGAGTTACTACATCCGGGCTAAATCCCGAAGGCAATTGTGCGAGTTACTACAT
* * *
122013285 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTGCGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCG
* *
122013350 AGTGAG-TAGCTACATCC-GGTTAAAATCCCGAAGG
66 AGCGAGTTA-CTACATCCGGGCT-AAATCCCGAAGG
122013384 TACTTGGCTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
119 5 0.06
120 78 0.94
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCAATTGCGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCG
AGCGAGTTACTACATCCGGGCTAAATCCCGAAGGCAATTGTGCGAGTTACTACAT
Found at i:122019671 original size:10 final size:10
Alignment explanation
Indices: 122019656--122019681 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
122019646 TGGATAGGTA
122019656 ATCTATAAGG
1 ATCTATAAGG
122019666 ATCTATAAGG
1 ATCTATAAGG
122019676 ATCTAT
1 ATCTAT
122019682 TAGTGCATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (10 bp):
ATCTATAAGG
Found at i:122021802 original size:40 final size:39
Alignment explanation
Indices: 122021729--122021846 Score: 155
Period size: 40 Copynumber: 3.0 Consensus size: 39
122021719 CGGGACTTTA
* * *
122021729 CCCGGATATCACGATTTGCACAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAATGCCTTCGGGTCTTAG
*
122021768 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCAC-AATGCCTTCGGGTCTTAG
* * *
122021808 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTA
1 CCCGGATATAACAACTTGCACAA-TGCCTTCGGGTCTTA
122021847 ACGGATATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 19 0.28
40 50 0.72
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (39 bp):
CCCGGATATAACAACTTGCACAATGCCTTCGGGTCTTAG
Found at i:122028278 original size:40 final size:40
Alignment explanation
Indices: 122028233--122028399 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
122028223 CGGAATATAA
122028233 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
122028273 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
122028313 CCGGATATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
122028352 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
*
122028392 CCAGATAT
1 CCGGATAT
122028400 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 32 0.31
40 72 0.69
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:122034229 original size:28 final size:28
Alignment explanation
Indices: 122034147--122034220 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
122034137 ATTTCATGAC
*
122034147 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTAATTGGGCCTGACGGGCCA
* * *
122034175 TATGAAAGTAATTGGGCCCGATGGGCCA
1 TATGAATGTAATTGGGCCTGACGGGCCA
122034203 TATGAATG-AATTGGGCCT
1 TATGAATGTAATTGGGCCT
122034221 AAAGGGGCCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 9 0.22
28 31 0.77
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (28 bp):
TATGAATGTAATTGGGCCTGACGGGCCA
Found at i:122037658 original size:40 final size:40
Alignment explanation
Indices: 122037599--122037721 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
122037589 GTCGTACAAT
* * *
122037599 GCCAAAGCTATCTCAAATCGCTCACTAAGTGCCATATATA
1 GCCAAAGCTATATCGAATCGCACACTAAGTGCCATATATA
*
122037639 GCCAAAGCTATATCGAATCGCACACTAGGTGCCATATATA
1 GCCAAAGCTATATCGAATCGCACACTAAGTGCCATATATA
* * * * *
122037679 G-TAGAAGCTATGTTGAATCGCACACTAAGTGCCACAAATA
1 GCCA-AAGCTATATCGAATCGCACACTAAGTGCCATATATA
122037719 GCC
1 GCC
122037722 GATTTCTCGT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (40 bp):
GCCAAAGCTATATCGAATCGCACACTAAGTGCCATATATA
Found at i:122038297 original size:135 final size:135
Alignment explanation
Indices: 122038055--122038325 Score: 497
Period size: 135 Copynumber: 2.0 Consensus size: 135
122038045 ATTCATGCAA
*
122038055 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCTTAGCAGCCCATATTTTCAATTTA
1 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGCAGCCCATATTTTCAATTTA
* *
122038120 TTTCATATTTTAAGCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
66 TTTCATATTTGAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
122038185 AAATC
131 AAATC
*
122038190 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGTAGCCCATATTTTCAATTTA
1 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGCAGCCCATATTTTCAATTTA
*
122038255 TTTCATATTTGAACCACAAAGTTTTTACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
66 TTTCATATTTGAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
122038320 AAATC
131 AAATC
122038325 A
1 A
122038326 CTTAACAAAA
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 131 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.36
Consensus pattern (135 bp):
ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGCAGCCCATATTTTCAATTTA
TTTCATATTTGAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
AAATC
Found at i:122045287 original size:40 final size:40
Alignment explanation
Indices: 122045217--122045324 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 40
122045207 AGTCGATATC
* *
122045217 TCACACACTAAGTGTCGTACATAGCTGAAGCTATCG-CAAA
1 TCACACACTAAGTGCCATACATAGCTGAAGCTAT-GTCAAA
* *
122045257 TCACACACTAAGTGCCATATATAGAC-GAAGCTATGTCGAA
1 TCACACACTAAGTGCCATACATAG-CTGAAGCTATGTCAAA
* *
122045297 TCACACACTAAGTGCCACAAATAGCTGA
1 TCACACACTAAGTGCCATACATAGCTGA
122045325 TTTGTCATCA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.95
41 1 0.02
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (40 bp):
TCACACACTAAGTGCCATACATAGCTGAAGCTATGTCAAA
Done.