Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 40 of 770
Found at i:11485947 original size:18 final size:18
Alignment explanation
Indices: 11485908--11486040 Score: 200
Period size: 18 Copynumber: 7.5 Consensus size: 18
11485898 AATGATATGT
11485908 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
11485925 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
11485943 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
11485960 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
11485978 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
11485995 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
11486013 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
11486032 AATCTTAGA
1 AATCTTAGA
11486041 AGATATGATT
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 45 0.43
18 48 0.46
19 11 0.11
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:11485948 original size:35 final size:35
Alignment explanation
Indices: 11485899--11486040 Score: 239
Period size: 35 Copynumber: 4.0 Consensus size: 35
11485889 ATAATCTTCA
* *
11485899 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
11485935 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
11485970 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
11486005 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
11486041 AGATATGATT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 84 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:11486582 original size:17 final size:17
Alignment explanation
Indices: 11486517--11486582 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
11486507 TCTAAACCAA
*
11486517 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
11486533 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
11486552 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
11486567 TATATATTATATTTTA
1 TATATATTATATTTTA
11486583 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:11486606 original size:26 final size:25
Alignment explanation
Indices: 11486559--11486607 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
11486549 TTATAAATAT
* * *
11486559 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
11486584 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
11486608 TTATATGCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:11489954 original size:23 final size:25
Alignment explanation
Indices: 11489928--11489979 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
11489918 CAGAATTCTT
11489928 CTTTACATTA-TAT-TC-TTTTAATG
1 CTTTACA-TAGTATCTCATTTTAATG
*
11489951 CTTTATATAGTATCTCATTTTAATG
1 CTTTACATAGTATCTCATTTTAATG
11489976 CTTT
1 CTTT
11489980 TGTGTATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 9 0.36
24 2 0.08
25 12 0.48
ACGTcount: A:0.25, C:0.13, G:0.06, T:0.56
Consensus pattern (25 bp):
CTTTACATAGTATCTCATTTTAATG
Found at i:11499244 original size:21 final size:21
Alignment explanation
Indices: 11499185--11499244 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
11499175 TTTTAGCAAA
* *
11499185 CATTCTTTTATTTAAAT-AAT
1 CATTCTTTTATTTCATTCAAT
* * *
11499205 CATCCTAATTCTTTC-TTCAAT
1 CATTCT-TTTATTTCATTCAAT
11499226 CATTCTTTTATTTCATTCA
1 CATTCTTTTATTTCATTCA
11499245 TAAACATACC
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.53
Consensus pattern (21 bp):
CATTCTTTTATTTCATTCAAT
Found at i:11502961 original size:21 final size:21
Alignment explanation
Indices: 11502937--11502976 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
11502927 CCAGCCATAC
* *
11502937 ATGTAAGACCCCATACCCGAG
1 ATGTAACACCCCAAACCCGAG
11502958 ATGTAACACCCCAAACCCG
1 ATGTAACACCCCAAACCCG
11502977 GCCTGGACGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.38, G:0.15, T:0.12
Consensus pattern (21 bp):
ATGTAACACCCCAAACCCGAG
Found at i:11504140 original size:28 final size:28
Alignment explanation
Indices: 11504107--11504163 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
11504097 AGGGTATATT
*
11504107 GGTAATTTTGTTATTTAGGGGTAATTTC
1 GGTAATTTTGCTATTTAGGGGTAATTTC
*
11504135 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTATTTAGGGGTAATTTC
11504163 G
1 G
11504164 TGATCTACGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.19, C:0.07, G:0.26, T:0.47
Consensus pattern (28 bp):
GGTAATTTTGCTATTTAGGGGTAATTTC
Found at i:11505811 original size:20 final size:20
Alignment explanation
Indices: 11505788--11505825 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11505778 CACATCCAAA
*
11505788 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
11505808 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
11505826 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:11507552 original size:25 final size:25
Alignment explanation
Indices: 11507524--11507602 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
11507514 ACTCGGCCCT
*
11507524 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
11507549 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
11507571 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
11507596 ATCACAT
1 ATCACAT
11507603 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:11507635 original size:94 final size:94
Alignment explanation
Indices: 11507474--11507900 Score: 557
Period size: 94 Copynumber: 4.3 Consensus size: 94
11507464 CCCTTTGGGA
* * * * * * *
11507474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
11507539 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
11507568 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
11507633 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
11507662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
11507727 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
11507760 CTTATCACATATATATACACTTTCACATTCATCACTTCGGCCATCAGGCCTTATTAGGCCTTATC
1 CTTATCAC--ATATATACACTTTCACATTCATCA-------CATC-GGCC--ATTAGGCCTTATC
*
11507825 ACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
54 ACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
11507868 CTTATCTCATATATATACACATTCACATTCATC
1 CTTA--TCACATATATACACTTTCACATTCATC
11507901 GCGTAAAATC
Statistics
Matches: 301, Mismatches: 14, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
94 92 0.31
96 46 0.15
98 73 0.24
105 4 0.01
106 7 0.02
108 76 0.25
110 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:11507695 original size:49 final size:49
Alignment explanation
Indices: 11507474--11507900 Score: 591
Period size: 49 Copynumber: 8.7 Consensus size: 49
11507464 CCCTTTGGGA
* * * * *
11507474 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
11507521 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
11507568 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
11507615 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
11507662 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
11507711 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
11507760 CTTATCACATATATATACACTTTCACATTCATCACTTCGGCCATCAGGCCTTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCA-------CATC-GGCC--ATTAGGC
* *
11507819 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
11507868 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
11507901 GCGTAAAATC
Statistics
Matches: 351, Mismatches: 15, Indels: 26
0.90 0.04 0.07
Matches are distributed among these distances:
46 1 0.00
47 137 0.39
49 158 0.45
51 4 0.01
52 4 0.01
56 4 0.01
57 4 0.01
59 39 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:11507825 original size:59 final size:59
Alignment explanation
Indices: 11507753--11507872 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
11507743 CACATCGGCC
*
11507753 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACTTCGGCCATCAGGCCTT
1 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGCCTT
* * *
11507812 ATTAGGCCTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGCCTT
11507871 AT
1 AT
11507873 CTCATATATA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.34
Consensus pattern (59 bp):
ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATCAGGCCTT
Found at i:11507944 original size:157 final size:156
Alignment explanation
Indices: 11507529--11507900 Score: 412
Period size: 157 Copynumber: 2.5 Consensus size: 156
11507519 GCCCTATCAC
* * *
11507529 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACCTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATTCAC
*** ** * **
11507592 ATTCATCACATCGGCCATTAGGCCTTATCACAT--ATATACACTTTCACATTCATCA-------C
66 ATTCATCACATAAACCATTA-GAATCAAAACATAAATATACACTTTCACATTCATCACTTCGGCC
11507648 ATC-GGCC--ATTAGGCCTTATCACAT
130 ATCAGGCCTTATTAGGCCTTATCACAT
*
11507672 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATTCAC
*** ** * ** *
11507737 ATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACTTCGGCC
66 ATTCATCACATAAACCATTA-GAATCAAAACATAAATATACACTTTCACATTCATCACTTCGGCC
11507802 ATCAGGCCTTATTAGGCCTTATCACAT
130 ATCAGGCCTTATTAGGCCTTATCACAT
* * *
11507829 ATGTATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATATACACATTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATTCAC
11507894 ATTCATC
66 ATTCATC
11507901 GCGTAAAATC
Statistics
Matches: 208, Mismatches: 7, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
143 45 0.22
145 48 0.23
147 22 0.11
154 4 0.02
155 4 0.02
157 85 0.41
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (156 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATTCAC
ATTCATCACATAAACCATTAGAATCAAAACATAAATATACACTTTCACATTCATCACTTCGGCCA
TCAGGCCTTATTAGGCCTTATCACAT
Found at i:11512333 original size:26 final size:26
Alignment explanation
Indices: 11512297--11512380 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
11512287 CATGAAATTC
11512297 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
11512323 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
11512349 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
11512375 TTATCA
1 TTATCA
11512381 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:11518083 original size:26 final size:26
Alignment explanation
Indices: 11518025--11518107 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
11518015 CATGAAATTC
11518025 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
11518050 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
11518076 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
11518102 TTATCA
1 TTATCA
11518108 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 22 0.40
26 33 0.60
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:11519619 original size:21 final size:21
Alignment explanation
Indices: 11519595--11519657 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
11519585 GTCTTCATTT
11519595 TATTCCTAATAAATTAAGCTA
1 TATTCCTAATAAATTAAGCTA
* * *
11519616 TATT--T--GAAA-TAATCTTT
1 TATTCCTAATAAATTAAGC-TA
11519633 TATTCCTAATAAATTAAGCTA
1 TATTCCTAATAAATTAAGCTA
11519654 TATT
1 TATT
11519658 TGAAATAATC
Statistics
Matches: 30, Mismatches: 6, Indels: 12
0.62 0.12 0.25
Matches are distributed among these distances:
16 4 0.13
17 8 0.27
19 2 0.07
21 12 0.40
22 4 0.13
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (21 bp):
TATTCCTAATAAATTAAGCTA
Found at i:11519643 original size:38 final size:38
Alignment explanation
Indices: 11519592--11519670 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
11519582 CTAGTCTTCA
11519592 TTTTATTCCTAATAAATTAAGCTATATTTGAAATAATC
1 TTTTATTCCTAATAAATTAAGCTATATTTGAAATAATC
11519630 TTTTATTCCTAATAAATTAAGCTATATTTGAAATAATC
1 TTTTATTCCTAATAAATTAAGCTATATTTGAAATAATC
11519668 TTT
1 TTT
11519671 CTTTTTTTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (38 bp):
TTTTATTCCTAATAAATTAAGCTATATTTGAAATAATC
Found at i:11520844 original size:43 final size:45
Alignment explanation
Indices: 11520766--11520869 Score: 115
Period size: 43 Copynumber: 2.4 Consensus size: 45
11520756 AGCCATCGGC
* **
11520766 CTTAT-TTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AG-T
1 CTTATCTT-TCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
* *
11520809 CTTATCTTTCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAAGAT
1 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
**
11520854 CTTATCTCCCTGAGGT
1 CTTATCTTTCTGAGGT
11520870 TGCAGCGGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
43 32 0.63
44 4 0.08
45 15 0.29
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (45 bp):
CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:11520966 original size:177 final size:177
Alignment explanation
Indices: 11520498--11521211 Score: 826
Period size: 176 Copynumber: 4.1 Consensus size: 177
11520488 TGGTGAAGTC
** * * * *
11520498 AGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGACA-ATGGCGAATCTTATCTCTATGTAT
1 AGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGA-AGATGGCGAATCTTATCTCTATGTAT
* * * * * *
11520561 CAGAAATAGAGCAGATTTAGGCCATCA-CCATTATCTCTCT-ATGGTAGTAAGTGAGCAGGTTGA
65 CGGCAATGGAGCAGATTTAAGCCATCAGCC-TTATCTCTCTGA-GGTAGCAAGAGAGCAGGTTGA
* * *
11520624 AGACTAAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAGATTGA
128 AGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* *** * * * * * * *
11520674 AGGTCTTATCTCCCT-AAACAGTAGTGGAATAGACCAAAGACGGCAAATCTTATCTCTATGTATC
1 AGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCTATGTATC
* *
11520738 GGCAATGGAGCAGATTTAAGCCATCGGCCTTATTTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 GGCAATGGAGCAGATTTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
11520803 ATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGTAGACTGAAGATTGA
131 ATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* *
11520850 AGATCTTATCTCCCTGAGGTTGCAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATC
1 AGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCTATGTATC
* * * *
11520915 GGCAATGGAGCAAATTTAAGCCA-CTAGCCTTATTTCTCTGAGGTGGCAAGAGAGCAAGTTGAAG
66 GGCAATGGAGCAGATTTAAGCCATC-AGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * *
11520979 AATGAGTCTTATCTTTCTAAGGTAGCAA-GAA--AG-C---AGACTGA
130 AATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * *
11521020 AGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGACGAATCTTATCTCTATGTGTC
1 AGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCTATGTATC
* * * *
11521085 GGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGATAGCAAGATAGCAGGTT-AAGA
66 GGCAATGGAGCAGATTTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
11521149 ATTGAGTTTTATCTTCCTGGGGTAGCAAGGAAGCAGACTGAAGATTAA
131 A-TGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
*
11521197 AGATTTTATCTCCCT
1 AGATCTTATCTCCCT
11521212 AAGCAGTAGC
Statistics
Matches: 462, Mismatches: 62, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
169 5 0.01
170 139 0.30
171 4 0.01
173 3 0.01
174 3 0.01
175 1 0.00
176 163 0.35
177 144 0.31
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (177 bp):
AGATCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCTATGTATC
GGCAATGGAGCAGATTTAAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
ATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:11521116 original size:170 final size:169
Alignment explanation
Indices: 11520498--11521193 Score: 734
Period size: 170 Copynumber: 4.0 Consensus size: 169
11520488 TGGTGAAGTC
* * *
11520498 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGACA-ATGGCGAATCTTATCTCTATGTATC
1 AGATCTTATCTCCCTAAGCAGCAGCGGAGCAGATCGA-AGATGGCGAATCTTATCTCTATGTATC
* * * * * * *
11520562 AGAAATAGAGCAGATTTAGGCCATCA-CCATTATCTCTCT-ATGGTAGTAAGTGAGCAGGTTGAA
65 GGCAATGGAGCAGATTTAAGCCACCAGCC-TTATCTCTCTGA-GGTAGCAAGAGAGCAGGTTGAA
* * * *
11520625 GACTAAGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAA
128 GAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTG-A
* * * ** * * * *
11520668 GATTGAAGGTCTTATCTCCCTAAACAGTAGTGGAATAGACCAAAGACGGCAAATCTTATCTCTAT
1 -A--G-A--TCTTATCTCCCTAAGCAGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCTAT
* * *
11520733 GTATCGGCAATGGAGCAGATTTAAGCCATCGGCCTTATTTCTCTGAGGTAGCAAGAGAGCAGGTT
60 GTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
11520798 GAAGAATGAGTCTTATCTTTCTGAGGTAGCAAGAAAGTAGACTGAAGATTGA
125 GAAGAATGAGTCTTATCTTCCTGAGGTAGCAAG-AA--AG-C---AGACTGA
* ** * *
11520850 AGATCTTATCTCCCTGAGGTTGCAGCGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATC
1 AGATCTTATCTCCCT-AAGCAGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCTATGTATC
* * * * *
11520915 GGCAATGGAGCAAATTTAAGCCACTAGCCTTATTTCTCTGAGGTGGCAAGAGAGCAAGTTGAAGA
65 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* *
11520980 ATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGA
130 ATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGA
** * *
11521020 AGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGATGACGAATCTTATCTCTATGTGTC
1 AGATCTTATCTCCCT-AAGCAGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCTATGTATC
* * *
11521085 GGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGATAGCAAGATAGCAGGTT-AAGA
65 GGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
11521149 ATTGAGTTTTATCTTCCTGGGGTAGCAAGGAAGCAGACTGA
130 A-TGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGA
11521190 AGAT
1 AGAT
11521194 TAAAGATTTT
Statistics
Matches: 448, Mismatches: 60, Indels: 35
0.83 0.11 0.06
Matches are distributed among these distances:
169 5 0.01
170 156 0.35
171 1 0.00
173 2 0.00
174 3 0.01
175 1 0.00
176 141 0.31
177 127 0.28
178 1 0.00
179 3 0.01
180 1 0.00
181 1 0.00
182 1 0.00
183 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (169 bp):
AGATCTTATCTCCCTAAGCAGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCTATGTATCG
GCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAA
TGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGA
Found at i:11523391 original size:23 final size:25
Alignment explanation
Indices: 11523365--11523416 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
11523355 CGGAATTCTT
11523365 CTTTACATTA-TAT-TC-TTTTAATG
1 CTTTACA-TAGTATCTCATTTTAATG
*
11523388 CTTTATATAGTATCTCATTTTAATG
1 CTTTACATAGTATCTCATTTTAATG
11523413 CTTT
1 CTTT
11523417 TGTGTAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 9 0.36
24 2 0.08
25 12 0.48
ACGTcount: A:0.25, C:0.13, G:0.06, T:0.56
Consensus pattern (25 bp):
CTTTACATAGTATCTCATTTTAATG
Found at i:11544471 original size:32 final size:32
Alignment explanation
Indices: 11544399--11544479 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
11544389 CGCTATAGGT
* *
11544399 AACGCCGCAAAAATTAGTGGCGTTTATTTAAAA
1 AACGCCGCTAAAAGTAG-GGCGTTTATTTAAAA
* *
11544432 AATGCCGCTAAAAGTA-GGCGTTTATTTTTAAA
1 AACGCCGCTAAAAGTAGGGCGTTTA-TTTAAAA
11544464 AACGCCGCTAAAAGTA
1 AACGCCGCTAAAAGTA
11544480 ATGACTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 8 0.19
32 21 0.50
33 13 0.31
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (32 bp):
AACGCCGCTAAAAGTAGGGCGTTTATTTAAAA
Found at i:11544820 original size:21 final size:20
Alignment explanation
Indices: 11544774--11544812 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
11544764 CTGTTGCCTC
*
11544774 TGCCTCCCTCGCTGCTGTCGA
1 TGCCTCTCTCGCTGCTG-CGA
11544795 TGCCTCTCTCGCTGCTGC
1 TGCCTCTCTCGCTGCTGC
11544813 AGTTGCCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.03, C:0.44, G:0.23, T:0.31
Consensus pattern (20 bp):
TGCCTCTCTCGCTGCTGCGA
Found at i:11548980 original size:15 final size:15
Alignment explanation
Indices: 11548960--11548990 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11548950 TATTTGATTA
11548960 TTAGTCCATCATTTT
1 TTAGTCCATCATTTT
*
11548975 TTAGTCCATTATTTT
1 TTAGTCCATCATTTT
11548990 T
1 T
11548991 GTATCTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (15 bp):
TTAGTCCATCATTTT
Found at i:11549957 original size:132 final size:131
Alignment explanation
Indices: 11549328--11549990 Score: 541
Period size: 132 Copynumber: 5.0 Consensus size: 131
11549318 ATTATTCATT
* * * * *
11549328 TAAAAATTCTTTAAAACG-AAGACGA-GATTTGATATTTGGCAATTCGCAGAATCA-TGCCCTAA
1 TAAAAACTCTTTAAAACGAAAG-CAATG-TTTGATGTTTGGCAATTCG-GGAAT-AGTGCCCTAT
* * * *
11549390 CTTGCTGGGTTACAATTTCGCGTTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG
62 CGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATG
11549455 TCTTT-
127 T-TTTC
** * * * * * * * *
11549460 TAAAATTTCTTTAAATCGAAGGCAAGGTTTGATATCTGGCAATTCACGGAATCGTGCCCTAAT-A
1 TAAAAACTCTTTAAAACGAAAGCAATGTTTGATGTTTGGCAATTC-GGGAATAGTGCCCT-ATCG
* * * * *
11549524 TGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAATATCCCTTCAAAATTTCACTCAGGTC
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTT
11549589 TTC
129 TTC
* * * ** * * * *
11549592 TAAAAA-TCCTTTAATATGAAGGCAATACTCGGTGTTTGACAATTCGGGAATCA-TACCCTATCG
1 TAAAAACT-CTTTAAAACGAAAGCAATGTTTGATGTTTGGCAATTCGGGAAT-AGTGCCCTATCG
* ** * * * * ***
11549655 TGCTAGGTTGTGATTTCTTGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTT
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTT
*
11549720 TTT
129 TTC
* * * * *
11549723 TAAGAAAACCCTTTAAAAC-AAAGGCGATGTTCGATGTTTGGCAATTCGAGAATCGTGCCCTATC
1 T-A-AAAACTCTTTAAAACGAAA-GCAATGTTTGATGTTTGGCAATTCGGGAATAGTGCCCTATC
*** * * ** * * **
11549787 GTGCTGGGTTGTGCTTTTTCATTTGTTCAAAACGATCGAAGATCCCTTCGAAATTTCACTCACAT
63 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGT
11549852 TTTC
128 TTTC
*
11549856 TAAAAACTCTTTAAAACGAAAGAAATGTTTGATGTTTGGCAATTCGGGGAATAGTGCCCTATCGT
1 TAAAAACTCTTTAAAACGAAAGCAATGTTTGATGTTTGGCAATTC-GGGAATAGTGCCCTATCGT
* * * * * * *
11549921 GCTGGGTTGCAATCTCCCGTTTGTTCAAAATAATCGAATATCTCTTCGAAATTTCTCTCGTATTT
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTTT
11549986 TC
130 TC
11549988 TAA
1 TAA
11549991 GGTGAGGCAA
Statistics
Matches: 419, Mismatches: 96, Indels: 32
0.77 0.18 0.06
Matches are distributed among these distances:
130 2 0.00
131 101 0.24
132 215 0.51
133 101 0.24
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (131 bp):
TAAAAACTCTTTAAAACGAAAGCAATGTTTGATGTTTGGCAATTCGGGAATAGTGCCCTATCGTG
CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATCCCTTCAAAATTTCACTCATGTTTT
C
Found at i:11552014 original size:26 final size:26
Alignment explanation
Indices: 11551985--11552040 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
11551975 TGATACAAAT
11551985 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11552011 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11552037 TGAT
1 TGAT
11552041 TGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:11556297 original size:25 final size:27
Alignment explanation
Indices: 11556260--11556312 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
11556250 TCAAACATGC
11556260 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
11556286 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
11556312 A
1 A
11556313 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:11557824 original size:25 final size:25
Alignment explanation
Indices: 11557795--11557844 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
11557785 GAAATGCCCA
11557795 TCATGGAACATTTACCTAACCCATT
1 TCATGGAACATTTACCTAACCCATT
11557820 TCATGGAACATTTACCTAACCCATT
1 TCATGGAACATTTACCTAACCCATT
11557845 ATCAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (25 bp):
TCATGGAACATTTACCTAACCCATT
Found at i:11564706 original size:16 final size:15
Alignment explanation
Indices: 11564685--11564715 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
11564675 ACAAAATACC
11564685 GGTTTTCGGCATTTTG
1 GGTTTTCGGC-TTTTG
11564701 GGTTTTCGGCTTTTG
1 GGTTTTCGGCTTTTG
11564716 CCGATCTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.13, G:0.32, T:0.52
Consensus pattern (15 bp):
GGTTTTCGGCTTTTG
Found at i:11565844 original size:26 final size:26
Alignment explanation
Indices: 11565814--11565864 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
11565804 GAAATGCCCA
11565814 TCATGGAACATTTACCTAACCCATTT
1 TCATGGAACATTTACCTAACCCATTT
*
11565840 TCATGGAACATTTACCTCACCCATT
1 TCATGGAACATTTACCTAACCCATT
11565865 ATCAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTT
Found at i:11566213 original size:2 final size:2
Alignment explanation
Indices: 11566202--11566233 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
11566192 GGGCGTTACA
11566202 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11566234 AAGTAAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11568412 original size:46 final size:46
Alignment explanation
Indices: 11568356--11568631 Score: 426
Period size: 46 Copynumber: 6.0 Consensus size: 46
11568346 AGTGTGCTCT
11568356 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
11568402 CTGATGTGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
11568448 CTGATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGAAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
11568494 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
11568540 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ****
11568586 ATGACATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
11568632 ATGACAGAAA
Statistics
Matches: 214, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 214 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:11568632 original size:46 final size:46
Alignment explanation
Indices: 11568357--11568684 Score: 361
Period size: 46 Copynumber: 7.0 Consensus size: 46
11568347 GTGTGCTCTC
* ** *
11568357 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * ** * *
11568403 TGATGTGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACC
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** * *
11568449 TGATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGAAACC
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* ** **
11568495 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
11568541 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* *
11568587 TGACATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
11568633 TGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATGAAAA-G-A--A-TAAGACCATGGTTGAAAGATACCATGGCAACA
11568683 TG
1 TG
11568685 TCAAAGATAA
Statistics
Matches: 256, Mismatches: 21, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
45 5 0.02
46 219 0.86
47 1 0.00
49 1 0.00
50 30 0.12
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (46 bp):
TGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:11568644 original size:138 final size:138
Alignment explanation
Indices: 11568361--11568679 Score: 433
Period size: 138 Copynumber: 2.3 Consensus size: 138
11568351 GCTCTCTGAT
* **
11568361 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCAT
* * * ***
11568426 GGTTGAAAGATACCATGGTAACCTGATATGAAAAGTGTAAGACCATGGTTGAAAGATACCATGGA
66 GGTTGAAAGATACCATGGCAACATGACATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGA
* *
11568491 AACCTGAT
131 AACATGAC
**
11568499 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCAT
*
11568564 GGTTGAAAGATACCATGGCAACATGACATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATGACATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGA
11568629 AACATGAC
131 AACATGAC
* * *
11568637 A-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCA
11568680 TCATGTCAAA
Statistics
Matches: 159, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
137 1 0.01
138 130 0.82
140 1 0.01
142 27 0.17
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (138 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGACATGAAAAAAATAAGACCATGGTTGAAAGATACCATGGA
AACATGAC
Found at i:11573190 original size:9 final size:9
Alignment explanation
Indices: 11573176--11573313 Score: 74
Period size: 9 Copynumber: 15.3 Consensus size: 9
11573166 TAACTCTAAT
11573176 TAAGTTATG
1 TAAGTTATG
*
11573185 TAAGTTTTG
1 TAAGTTATG
* * *
11573194 ATATGATATA
1 -TAAGTTATG
*
11573204 T-ATTTATG
1 TAAGTTATG
11573212 T-A-TTATG
1 TAAGTTATG
11573219 TAAGTTATG
1 TAAGTTATG
*
11573228 TAAATTATG
1 TAAGTTATG
11573237 TAAGTTATCCG
1 TAAGTTAT--G
11573248 -AA-TTATG
1 TAAGTTATG
*
11573255 TAAATTATG
1 TAAGTTATG
*
11573264 TAAGATATGATA
1 TAAG-T-T-ATG
*
11573276 TATATTTATG
1 TA-AGTTATG
11573286 T-A-TTATG
1 TAAGTTATG
11573293 TAAGTTATG
1 TAAGTTATG
*
11573302 TAAATTATG
1 TAAGTTATG
11573311 TAA
1 TAA
11573314 AATATGATAT
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
7 13 0.13
8 10 0.10
9 57 0.57
10 11 0.11
11 3 0.03
12 5 0.05
13 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:11573236 original size:18 final size:18
Alignment explanation
Indices: 11573213--11573313 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
11573203 ATATTTATGT
11573213 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
***
11573231 ATTATGTAAGTTATCCGA
1 ATTATGTAAGTTATGTAA
*
11573249 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
11573267 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
11573287 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
11573305 ATTATGTAA
1 ATTATGTAA
11573314 AATATGATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 39 0.59
19 4 0.06
20 1 0.02
21 4 0.06
22 7 0.11
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:11573314 original size:9 final size:9
Alignment explanation
Indices: 11573213--11573319 Score: 85
Period size: 9 Copynumber: 11.7 Consensus size: 9
11573203 ATATTTATGT
11573213 ATTATGTAA
1 ATTATGTAA
*
11573222 GTTATGTAA
1 ATTATGTAA
11573231 ATTATGTAA
1 ATTATGTAA
* ***
11573240 GTTATCCGA
1 ATTATGTAA
11573249 ATTATGTAA
1 ATTATGTAA
11573258 ATTATGTAA
1 ATTATGTAA
11573267 GA-TATGATATA
1 -ATTATG-TA-A
11573278 TATTTATGT--
1 -A-TTATGTAA
11573287 ATTATGTAA
1 ATTATGTAA
*
11573296 GTTATGTAA
1 ATTATGTAA
11573305 ATTATGTAA
1 ATTATGTAA
*
11573314 AATATG
1 ATTATG
11573320 ATATATATTT
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
7 6 0.08
8 1 0.01
9 60 0.78
10 3 0.04
11 2 0.03
12 1 0.01
13 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (9 bp):
ATTATGTAA
Found at i:11573522 original size:5 final size:5
Alignment explanation
Indices: 11573512--11573536 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
11573502 TTTTCGTTAT
11573512 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
11573537 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:11573793 original size:5 final size:5
Alignment explanation
Indices: 11573783--11573807 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
11573773 TTTTCCTGAT
11573783 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
11573808 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:11573889 original size:5 final size:5
Alignment explanation
Indices: 11573879--11573903 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
11573869 TTTTCTTGAT
11573879 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
11573904 CTTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:11573959 original size:96 final size:96
Alignment explanation
Indices: 11573497--11573961 Score: 705
Period size: 96 Copynumber: 5.0 Consensus size: 96
11573487 AATTATTTAC
* *
11573497 AAGTTTTTTCGTTATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTT-ATGT
1 AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAAT-T
11573561 AGGTAATTTAAAAATAAAATAAAAGTAGACAA
65 AGGTAATTTAAAAATAAAATAAAAGTAGACAA
* *
11573593 AAGTTTTTTCCTGA-T----TAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTATTTA
1 AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
*
11573653 GGTAATTTAAAAATAAAATAAAAATAGACAA
66 GGTAATTTAAAAATAAAATAAAAGTAGACAA
* *
11573684 AGGTTTTTT-C-G--T--GAT----TAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
1 AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
11573739 GGTAATTTAAAAATAAAATAAAAGTAGAC--
66 GGTAATTTAAAAATAAAATAAAAGTAGACAA
11573768 AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
1 AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
* *
11573833 GGTAATTTAAAAATAAAATAAAATTTGACAA
66 GGTAATTTAAAAATAAAATAAAAGTAGACAA
*
11573864 AAGTTTTTTCTTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
1 AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
11573929 GGTAATTTAAAAATAAAATAAAAGTAGACAA
66 GGTAATTTAAAAATAAAATAAAAGTAGACAA
11573960 AA
1 AA
11573962 TATTTTAAAC
Statistics
Matches: 338, Mismatches: 16, Indels: 30
0.88 0.04 0.08
Matches are distributed among these distances:
84 8 0.02
85 1 0.00
86 67 0.20
88 2 0.01
89 1 0.00
90 4 0.01
91 79 0.23
92 1 0.00
94 67 0.20
95 1 0.00
96 107 0.32
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.35
Consensus pattern (96 bp):
AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTA
GGTAATTTAAAAATAAAATAAAAGTAGACAA
Found at i:11574685 original size:8 final size:8
Alignment explanation
Indices: 11574672--11574726 Score: 67
Period size: 8 Copynumber: 7.0 Consensus size: 8
11574662 CAAAAAATTC
11574672 CACTATTA
1 CACTATTA
11574680 CACTATTA
1 CACTATTA
11574688 CACTA-TA
1 CACTATTA
* *
11574695 CGCAATTA
1 CACTATTA
*
11574703 CACTATTC
1 CACTATTA
*
11574711 CACTATTC
1 CACTATTA
11574719 CACTATTA
1 CACTATTA
11574727 TCATAATCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
7 5 0.12
8 35 0.88
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.35
Consensus pattern (8 bp):
CACTATTA
Found at i:11575337 original size:3 final size:3
Alignment explanation
Indices: 11575329--11575382 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
11575319 AAATTATTTG
11575329 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11575377 AAT AAT
1 AAT AAT
11575383 GTTTATTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11576943 original size:158 final size:157
Alignment explanation
Indices: 11576678--11576967 Score: 399
Period size: 158 Copynumber: 1.8 Consensus size: 157
11576668 CGTTTATTTA
* *
11576678 AAAAACACCGCTAATCCCTATATATTCAACTAAAACGACGCCGTGTACAGTAAACTTTACTTATT
1 AAAAACACCGCTAATCCCTATATATTCAACTAAAACGACGACGTGTACAGTAAACTTTACTTATG
** *
11576743 TTGCAGCGTTTTTAAAAGCGCCACTAATACCCTCATATACTAAAACGGTGCCGTTTTCTTTAAAC
66 TTGCAGCGTTTTTAAAAGCGCCACTAATACCCTCATATACTAAAACGACGCCGCTTTCTTTAAAC
11576808 TAAACTGTCTTTTGTGGCATTTTCTAT
131 TAAACTGTCTTTTGTGGCATTTTCTAT
* * * *
11576835 AAAAACGCCGCTAATCCCCTATATATTCAACTAAAACGACGACGCT-TCCAGTACACTTTACTTC
1 AAAAACACCGCTAAT-CCCTATATATTCAACTAAAACGACGACG-TGTACAGTAAACTTTACTTA
* *
11576899 TGTTGCGGCGTTTTTCAAAA-CGCCACTAATACTCT-ATCCA-ACTAAAACGACGCCGCTTTCTT
64 TGTTGCAGCGTTTTT-AAAAGCGCCACTAATACCCTCAT--ATACTAAAACGACGCCGCTTTCTT
*
11576961 TCAACTA
126 TAAACTA
11576968 TACTATTTTT
Statistics
Matches: 116, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
157 16 0.14
158 94 0.81
159 6 0.05
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (157 bp):
AAAAACACCGCTAATCCCTATATATTCAACTAAAACGACGACGTGTACAGTAAACTTTACTTATG
TTGCAGCGTTTTTAAAAGCGCCACTAATACCCTCATATACTAAAACGACGCCGCTTTCTTTAAAC
TAAACTGTCTTTTGTGGCATTTTCTAT
Found at i:11577937 original size:14 final size:14
Alignment explanation
Indices: 11577917--11577961 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
11577907 TCCTACACCT
11577917 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
11577931 TATACCCTAAATCA
1 TAAACCCTAAACCA
*
11577945 TAAACCCTAAACTA
1 TAAACCCTAAACCA
11577959 TAA
1 TAA
11577962 TGATAATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:11578422 original size:40 final size:40
Alignment explanation
Indices: 11578378--11578472 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
11578368 TTTCTCCAAG
*
11578378 GCGCCGCTAATGGTCAAGC-TATAGCGACGTTT-TCATATAA
1 GCGCCGCTAATGCTCAA-CATATAGCGACGTTTCT-ATATAA
* * * *
11578418 GCGCCACTAATTCTCAACATATAGCGGCGTTTCTTTATAA
1 GCGCCGCTAATGCTCAACATATAGCGACGTTTCTATATAA
11578458 GCGCCGCTAATGCTC
1 GCGCCGCTAATGCTC
11578473 GTTTTTTAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 44 0.96
41 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
GCGCCGCTAATGCTCAACATATAGCGACGTTTCTATATAA
Found at i:11578534 original size:40 final size:40
Alignment explanation
Indices: 11578456--11578530 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 40
11578446 GTTTCTTTAT
11578456 AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTTG
1 AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTTG
*
11578496 AAGCGCCTCTAATGCTC-TTTTTTAGTGGCGTTTTT
1 AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTT
11578531 TGTTAAAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
39 18 0.53
40 16 0.47
ACGTcount: A:0.13, C:0.19, G:0.24, T:0.44
Consensus pattern (40 bp):
AAGCGCCGCTAATGCTCGTTTTTTAGTGGCGTTTTTGTTG
Found at i:11581209 original size:11 final size:11
Alignment explanation
Indices: 11581181--11581223 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
11581171 TTGACCTTTC
11581181 CAAGGTATGGG
1 CAAGGTATGGG
*
11581192 -TAGGTATGGG
1 CAAGGTATGGG
11581202 CAAGGTATGGG
1 CAAGGTATGGG
*
11581213 CAAGGAATGGG
1 CAAGGTATGGG
11581224 TATATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.28, C:0.07, G:0.47, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:11585241 original size:18 final size:18
Alignment explanation
Indices: 11585218--11585262 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
11585208 ACTATATATG
11585218 TAAATAGTGTCATACACA
1 TAAATAGTGTCATACACA
* * *
11585236 TAAATAGTGTCGTATACG
1 TAAATAGTGTCATACACA
11585254 TAAATAGTG
1 TAAATAGTG
11585263 CAGTAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (18 bp):
TAAATAGTGTCATACACA
Found at i:11585828 original size:11 final size:11
Alignment explanation
Indices: 11585800--11585847 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
11585790 TTGACCTTTC
11585800 CAAGGTATGGG
1 CAAGGTATGGG
*
11585811 -TAGGTATGGG
1 CAAGGTATGGG
*
11585821 AAAGGTATGGG
1 CAAGGTATGGG
11585832 CAAGGTATGGG
1 CAAGGTATGGG
11585843 CAAGG
1 CAAGG
11585848 AATGAGTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
10 9 0.27
11 24 0.73
ACGTcount: A:0.29, C:0.06, G:0.46, T:0.19
Consensus pattern (11 bp):
CAAGGTATGGG
Found at i:11586092 original size:14 final size:13
Alignment explanation
Indices: 11586065--11586089 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11586055 TATTTAAGAT
11586065 TTATTTAATTTTA
1 TTATTTAATTTTA
11586078 TTATTTAATTTT
1 TTATTTAATTTT
11586090 TATAAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTAATTTTA
Found at i:11586520 original size:31 final size:30
Alignment explanation
Indices: 11586469--11586559 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
11586459 CATAACCAAA
*
11586469 AAAATTTATAATTTAA-TTATTGAATTATTC
1 AAAATTT-TAATTTAAGTTATTGAACTATTC
* *
11586499 GAAAATTTTCATTTAAGTTATTGAACAATTC
1 -AAAATTTTAATTTAAGTTATTGAACTATTC
* * *
11586530 AAAAGTTTTTATTCAAGTTATGGAACTATT
1 AAAA-TTTTAATTTAAGTTATTGAACTATT
11586560 AATTATTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
30 11 0.22
31 40 0.78
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.45
Consensus pattern (30 bp):
AAAATTTTAATTTAAGTTATTGAACTATTC
Found at i:11587571 original size:14 final size:13
Alignment explanation
Indices: 11587552--11587584 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
11587542 CAATACAAAT
11587552 CCAAAACCCTTAGC
1 CCAAAA-CCTTAGC
11587566 CCAAAA-CTTAGC
1 CCAAAACCTTAGC
11587578 CCAAAAC
1 CCAAAAC
11587585 ACTAACCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.67
14 6 0.33
ACGTcount: A:0.42, C:0.39, G:0.06, T:0.12
Consensus pattern (13 bp):
CCAAAACCTTAGC
Found at i:11587680 original size:38 final size:38
Alignment explanation
Indices: 11587629--11587717 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 38
11587619 AACCCTAATC
* *
11587629 CCACCTACTCCACCACCTTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGCTGGCCACCCACCTTGG
11587667 CCACCTACTCCACCACCCTTGCTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGCTGGCCACCCACCTTGG
*
11587705 CCACCTACACCAC
1 CCACCTACTCCAC
11587718 TATGCCACCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.18, C:0.52, G:0.11, T:0.19
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGCTGGCCACCCACCTTGG
Found at i:11588797 original size:22 final size:22
Alignment explanation
Indices: 11588772--11588813 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11588762 TAACGTGCTA
* *
11588772 TTATTACTATTATTTTTATTTG
1 TTATTACCATTATTGTTATTTG
11588794 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
11588814 GTAATTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTG
Found at i:11600939 original size:44 final size:45
Alignment explanation
Indices: 11600885--11601001 Score: 132
Period size: 44 Copynumber: 2.6 Consensus size: 45
11600875 GCAGCAAGCA
* * * *
11600885 TTAACCCCCTAAGCAGTAGGGTAACAAGCT-GAAGTTCAT-AGAT
1 TTAACACCCTAAGCAGTAGGGTAACAAGCTCGAAGATAATGAGCT
* * *
11600928 CTTATCACCCTAAGCAGTAGGGAAAC-AGATCGAAGATAATGAGCT
1 -TTAACACCCTAAGCAGTAGGGTAACAAGCTCGAAGATAATGAGCT
*
11600973 TTAACCCCCTAAGCAGTAGGGTAACAAGC
1 TTAACACCCTAAGCAGTAGGGTAACAAGC
11601002 CAAATTTACA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
43 3 0.05
44 51 0.86
45 5 0.08
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (45 bp):
TTAACACCCTAAGCAGTAGGGTAACAAGCTCGAAGATAATGAGCT
Found at i:11600999 original size:88 final size:86
Alignment explanation
Indices: 11600828--11601036 Score: 249
Period size: 88 Copynumber: 2.4 Consensus size: 86
11600818 CTAGAATCAG
* * *
11600828 TGAATTCACAGATCTTACCCCATAAGCAGTAGGGAAATAGATCGAAGGCAGCAAGCATTAACCCC
1 TGAATTCACAGATCTTACCCCATAAGCAGTAGGGAAACAGATCGAAGACAACAAGCATTAACCCC
11600893 CTAAGCAGTAGGGTAACAAGC
66 CTAAGCAGTAGGGTAACAAGC
* * ** *
11600914 TGAAGTTCATAGATCTTATCACCC-TAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAAC
1 TGAA-TTCACAGATCTTA-C-CCCATAAGCAGTAGGGAAACAGATCGAAGACAACAAGCATTAAC
11600978 CCCCTAAGCAGTAGGGTAACAAGC
63 CCCCTAAGCAGTAGGGTAACAAGC
** * * * *
11601002 CAAATTTACAGACCTTAACCCCCTAAGTAGTAGGG
1 TGAATTCACAGATCTT-ACCCCATAAGCAGTAGGG
11601037 TAATAGGCTA
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
86 7 0.07
87 33 0.32
88 61 0.59
89 3 0.03
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (86 bp):
TGAATTCACAGATCTTACCCCATAAGCAGTAGGGAAACAGATCGAAGACAACAAGCATTAACCCC
CTAAGCAGTAGGGTAACAAGC
Found at i:11602163 original size:37 final size:38
Alignment explanation
Indices: 11602085--11602174 Score: 155
Period size: 38 Copynumber: 2.4 Consensus size: 38
11602075 AACCCTAATC
*
11602085 CCACCTACTCCACCACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACTACCCTTGTTGGCCACCCACCTTGG
11602123 CCACCTACTCCACTACCCTTGTTGGCC-CCCACCTTGG
1 CCACCTACTCCACTACCCTTGTTGGCCACCCACCTTGG
*
11602160 CCACCTACACCACTA
1 CCACCTACTCCACTA
11602175 TGCCACCACT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 24 0.48
38 26 0.52
ACGTcount: A:0.18, C:0.50, G:0.11, T:0.21
Consensus pattern (38 bp):
CCACCTACTCCACTACCCTTGTTGGCCACCCACCTTGG
Found at i:11603263 original size:22 final size:22
Alignment explanation
Indices: 11603238--11603279 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11603228 TAACGTGCTA
* *
11603238 TTATTACTATTATTTTTATTTG
1 TTATTACCATTATTGTTATTTG
11603260 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
11603280 GTAATTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTG
Found at i:11604951 original size:2 final size:2
Alignment explanation
Indices: 11604939--11604973 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
11604929 AATGTCTATT
*
11604939 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11604974 TAGAGAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:11611140 original size:12 final size:12
Alignment explanation
Indices: 11611125--11611149 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11611115 AATAAAGAGG
11611125 AAAATAAAAAAT
1 AAAATAAAAAAT
11611137 AAAATAAAAAAT
1 AAAATAAAAAAT
11611149 A
1 A
11611150 CACCTTTCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:11614438 original size:26 final size:26
Alignment explanation
Indices: 11614402--11614485 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
11614392 TGATACAAAT
11614402 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
11614428 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
11614454 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
11614480 TGATAA
1 TGATAA
11614486 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:11616000 original size:26 final size:26
Alignment explanation
Indices: 11615971--11616023 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11615961 TTTACAATTT
11615971 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
11615997 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
11616023 T
1 T
11616024 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:11617126 original size:24 final size:24
Alignment explanation
Indices: 11617094--11617144 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
11617084 ATGTGGCATA
*
11617094 CCGGATCCGGCCATAACTTCTGTG
1 CCGGATCCGGCCATAACTTCTGGG
11617118 CCGGATCCGGCCATAACTTCTGGG
1 CCGGATCCGGCCATAACTTCTGGG
11617142 CCG
1 CCG
11617145 AGTTTGGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.35, G:0.27, T:0.22
Consensus pattern (24 bp):
CCGGATCCGGCCATAACTTCTGGG
Found at i:11618779 original size:18 final size:18
Alignment explanation
Indices: 11618740--11618872 Score: 191
Period size: 18 Copynumber: 7.5 Consensus size: 18
11618730 AATGATATGT
11618740 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
11618757 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
11618775 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
11618792 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
11618810 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
11618827 AATCTTAGTTATGATTGC
1 AATCTTAGATATGATTAC
11618845 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
11618864 AATCTTAGA
1 AATCTTAGA
11618873 AGATATGATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 44 0.43
18 47 0.46
19 11 0.11
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:11618780 original size:35 final size:35
Alignment explanation
Indices: 11618731--11618872 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
11618721 ATAATCTTCA
* *
11618731 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
11618767 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
11618802 ATGATTGCAATCTTAGATATGATACAATCTTAGTT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
11618837 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
11618873 AGATATGATT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 83 0.83
36 5 0.05
37 12 0.12
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:11619428 original size:26 final size:25
Alignment explanation
Indices: 11619381--11619429 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
11619371 TTATAAACAT
* * *
11619381 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
11619406 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
11619430 TTATATGCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:11622522 original size:14 final size:14
Alignment explanation
Indices: 11622503--11622532 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11622493 AAGATATTCT
11622503 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
*
11622517 TTTTCTAAATGAAA
1 TTTTCTAAATAAAA
11622531 TT
1 TT
11622533 AAGTCGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:11625167 original size:10 final size:10
Alignment explanation
Indices: 11625149--11625199 Score: 59
Period size: 10 Copynumber: 4.9 Consensus size: 10
11625139 TTCTATTTCA
11625149 AAAAAAAAAG
1 AAAAAAAAAG
*
11625159 AAAAGAAAAG
1 AAAAAAAAAG
11625169 AAAAATAGAAA-
1 AAAAA-A-AAAG
11625180 AAAAAAAAGAG
1 AAAAAAAA-AG
11625191 AAAAAAAAA
1 AAAAAAAAA
11625200 TAGAGAGGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
9 2 0.06
10 16 0.46
11 14 0.40
12 3 0.09
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:11625178 original size:13 final size:12
Alignment explanation
Indices: 11625151--11625203 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
11625141 CTATTTCAAA
*
11625151 AAAAAAAGAAAAG
1 AAAAAAA-AATAG
11625164 AAAAGAAAAATAG
1 AAAA-AAAAATAG
*
11625177 AAAAAAAAAAAGAG
1 --AAAAAAAAATAG
11625191 AAAAAAAAATAG
1 AAAAAAAAATAG
11625203 A
1 A
11625204 GAGGCCAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 12 0.35
13 8 0.24
14 10 0.29
15 4 0.12
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (12 bp):
AAAAAAAAATAG
Found at i:11625178 original size:18 final size:15
Alignment explanation
Indices: 11625148--11625199 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
11625138 CTTCTATTTC
11625148 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
11625163 GAAAAGAAAAATAG-AAA
1 -AAAA-AAAAA-AGAAAA
*
11625180 AAAAAAAAGAGAAAA
1 AAAAAAAAAAGAAAA
11625195 AAAAA
1 AAAAA
11625200 TAGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
14 2 0.06
15 12 0.38
16 8 0.25
17 8 0.25
18 2 0.06
ACGTcount: A:0.87, C:0.00, G:0.12, T:0.02
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:11625181 original size:14 final size:14
Alignment explanation
Indices: 11625162--11625205 Score: 65
Period size: 13 Copynumber: 3.2 Consensus size: 14
11625152 AAAAAAGAAA
11625162 AGAAAAGAAAAATAG
1 AGAAAA-AAAAATAG
11625177 A-AAAAAAAAA-AG
1 AGAAAAAAAAATAG
11625189 AGAAAAAAAAATAG
1 AGAAAAAAAAATAG
11625203 AGA
1 AGA
11625206 GGCCAAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 3 0.11
13 14 0.52
14 9 0.33
15 1 0.04
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.05
Consensus pattern (14 bp):
AGAAAAAAAAATAG
Found at i:11625198 original size:26 final size:28
Alignment explanation
Indices: 11625149--11625203 Score: 87
Period size: 26 Copynumber: 2.0 Consensus size: 28
11625139 TTCTATTTCA
11625149 AAAAAAAAAGAAAAGAAAAGAAAAATAG
1 AAAAAAAAAGAAAAGAAAAGAAAAATAG
*
11625177 AAAAAAAAA-AAGAGAAAA-AAAAATAG
1 AAAAAAAAAGAAAAGAAAAGAAAAATAG
11625203 A
1 A
11625204 GAGGCCAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 9 0.35
27 8 0.31
28 9 0.35
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.04
Consensus pattern (28 bp):
AAAAAAAAAGAAAAGAAAAGAAAAATAG
Found at i:11626125 original size:44 final size:44
Alignment explanation
Indices: 11626077--11626255 Score: 195
Period size: 44 Copynumber: 4.1 Consensus size: 44
11626067 CAAAGAAACA
* * *
11626077 AGATTTGGCATCTCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * **
11626121 AGATTTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
11626166 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
11626209 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAA-ATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
11626252 AGAT
1 AGAT
11626256 CTAACTTCAG
Statistics
Matches: 110, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
42 2 0.02
43 22 0.20
44 71 0.65
45 14 0.13
46 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:11626574 original size:118 final size:119
Alignment explanation
Indices: 11626247--11626837 Score: 999
Period size: 118 Copynumber: 5.0 Consensus size: 119
11626237 ACAGATCGAA
*
11626247 ATAGCAGATCTAA-CTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
11626311 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
11626365 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
11626430 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
11626484 ATAGCAGAT-TAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
11626548 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
11626602 ATAGCAGATCTAACCTTCA-ATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
11626666 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
11626720 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
** * * * *
11626785 TTACAAGGAACAAATTAAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
11626838 CAGACTCAAG
Statistics
Matches: 450, Mismatches: 20, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
118 243 0.54
119 207 0.46
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:11626736 original size:237 final size:238
Alignment explanation
Indices: 11626247--11626837 Score: 1008
Period size: 237 Copynumber: 2.5 Consensus size: 238
11626237 ACAGATCGAA
*
11626247 ATAGCAGATCTAA-CTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
11626311 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAGATAGCAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAAGATAGCAGATCT
*
11626376 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
*
11626441 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
196 AAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAAT
*
11626484 ATAGCAGAT-TAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
11626548 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAAGATAGCAGATCT
* *
11626613 AACCTTCA-ATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
11626677 AAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAAT
196 AAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAAT
* * *
11626720 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
** * * *
11626785 TTACAAGGAACAAATTAAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
11626838 CAGACTCAAG
Statistics
Matches: 334, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
236 107 0.32
237 227 0.68
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (238 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAAGATAGCAGATCT
AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
AAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAAT
Found at i:11626866 original size:83 final size:83
Alignment explanation
Indices: 11626761--11627112 Score: 580
Period size: 83 Copynumber: 4.2 Consensus size: 83
11626751 GAAGCAGATC
**
11626761 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTAAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
11626826 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
11626844 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
* *
11626909 AATGTTCTCAAAGAGATT
66 AATGTTCTCAAACAGACT
* *
11626927 CAAGATGGTTTGGCATCCTTGTGCTTACAA-GAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
11626991 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
11627009 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
*
11627074 AAATATTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
11627093 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
11627113 ACAAATCGAA
Statistics
Matches: 253, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
82 59 0.23
83 136 0.54
84 58 0.23
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:11627546 original size:18 final size:18
Alignment explanation
Indices: 11627507--11627639 Score: 200
Period size: 18 Copynumber: 7.5 Consensus size: 18
11627497 AATGATATGT
11627507 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
11627524 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
11627542 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
11627559 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
11627577 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
11627594 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
11627612 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
11627631 AATCTTAGA
1 AATCTTAGA
11627640 AGATATGATT
Statistics
Matches: 104, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
17 45 0.43
18 48 0.46
19 11 0.11
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:11627547 original size:35 final size:35
Alignment explanation
Indices: 11627498--11627639 Score: 239
Period size: 35 Copynumber: 4.0 Consensus size: 35
11627488 ATAATCTTCA
* *
11627498 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
11627534 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
11627569 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
11627604 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
11627640 AGATATGATT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
35 84 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:11628134 original size:34 final size:34
Alignment explanation
Indices: 11628095--11628169 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
11628085 ATATTTATAC
*
11628095 ATTATTTTTCTAAACCAATATATTTTA-TATA-ATT
1 ATTATTTTTATAAA-C-ATATATTTTATTATATATT
* *
11628129 ATTATTCTTATAAACATATTTTTTATTATATATT
1 ATTATTTTTATAAACATATATTTTATTATATATT
11628163 A-TATTTT
1 ATTATTTT
11628170 AAATTTATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.26
33 10 0.29
34 16 0.46
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (34 bp):
ATTATTTTTATAAACATATATTTTATTATATATT
Found at i:11628194 original size:26 final size:26
Alignment explanation
Indices: 11628146--11628195 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
11628136 TTATAAACAT
* * * *
11628146 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
11628172 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
11628196 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:11631087 original size:26 final size:26
Alignment explanation
Indices: 11631051--11631160 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
11631041 TGATACAAAT
11631051 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
11631077 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
11631103 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
11631129 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
11631155 TGATAA
1 TGATAA
11631161 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:11632667 original size:25 final size:26
Alignment explanation
Indices: 11632639--11632690 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
11632629 TTTACAATTT
11632639 TACCCCTAGGAG-TAAATT-ACCGAAA
1 TACCCCTAGG-GTTAAATTGACCGAAA
*
11632664 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGTTAAATTGACCGAAA
11632690 T
1 T
11632691 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 16 0.67
26 7 0.29
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGTTAAATTGACCGAAA
Found at i:11634052 original size:16 final size:16
Alignment explanation
Indices: 11634006--11634052 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
11633996 TATTAAAAAA
11634006 AATTAATATAAAATAAG
1 AATTAA-ATAAAATAAG
*
11634023 AATTAAATATAATAA-
1 AATTAAATAAAATAAG
*
11634038 ATATTAGATAAAATA
1 A-ATTAAATAAAATA
11634053 TGTATTTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 1 0.04
16 19 0.73
17 6 0.23
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (16 bp):
AATTAAATAAAATAAG
Found at i:11636163 original size:20 final size:20
Alignment explanation
Indices: 11636138--11636183 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
11636128 ATTGGGTCTT
11636138 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
11636158 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
11636177 GCCCATA
1 GCCCATA
11636184 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:11636192 original size:19 final size:20
Alignment explanation
Indices: 11636150--11636193 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
11636140 CCATATTAAC
** *
11636150 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
11636170 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
11636189 ACAGT
1 ACAGT
11636194 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:11636806 original size:8 final size:8
Alignment explanation
Indices: 11636793--11636824 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
11636783 TCATAAATGC
11636793 CGGCTTTT
1 CGGCTTTT
11636801 CGGCTTTT
1 CGGCTTTT
11636809 CGGCTTTT
1 CGGCTTTT
11636817 CGGCTTTT
1 CGGCTTTT
11636825 ACCGATCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:11637519 original size:17 final size:18
Alignment explanation
Indices: 11637497--11637534 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
11637487 TGAGAGAAGG
11637497 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAA-AAAAA
11637514 ATAGAAGAAGGAAAAAAA
1 ATAGAAGAAGGAAAAAAA
11637532 ATA
1 ATA
11637535 AATAAATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 10 0.53
19 3 0.16
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (18 bp):
ATAGAAGAAGGAAAAAAA
Found at i:11639025 original size:19 final size:19
Alignment explanation
Indices: 11639001--11639080 Score: 128
Period size: 19 Copynumber: 4.3 Consensus size: 19
11638991 AATCTTTAAG
*
11639001 GATATGCAATCTTAGATTT
1 GATATGCAATCTTAGATAT
*
11639020 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
11639039 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
11639058 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
11639075 GATATG
1 GATATG
11639081 ATATGATATG
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
17 17 0.30
19 40 0.70
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:11642351 original size:20 final size:20
Alignment explanation
Indices: 11642321--11642365 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
11642311 CTGTTTTATT
11642321 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
11642340 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
11642360 ATGGGC
1 ATGGGC
11642366 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:11642433 original size:27 final size:28
Alignment explanation
Indices: 11642394--11642495 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 28
11642384 ACTTGTAATA
*
11642394 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTACGGCCCAGATTGATATTGATAT
11642422 GGGCTA-GGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTACGGCCCAG-A---T-TGATATTGAT-AT
* *
11642454 AGGGCTATGGCCC-GATTAATATTGATAT
1 -GGGCTACGGCCCAGATTGATATTGATAT
*
11642482 GGGCTAAGGCCCAG
1 GGGCTACGGCCCAG
11642496 TTAACACTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 20
0.73 0.04 0.24
Matches are distributed among these distances:
27 18 0.30
28 17 0.28
29 2 0.03
31 2 0.03
32 10 0.16
33 7 0.11
34 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (28 bp):
GGGCTACGGCCCAGATTGATATTGATAT
Found at i:11642516 original size:61 final size:61
Alignment explanation
Indices: 11642389--11642529 Score: 155
Period size: 61 Copynumber: 2.3 Consensus size: 61
11642379 TCTCGACTTG
* * * * *
11642389 TAATAGGGCTACGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATATTG
1 TAATAGGGCTACGGCCCAGATTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
* *
11642450 TAATAGGGCTATGGCCC-GATTAATATTGATATGGGCTAAGGCCCAGT-TAACACT-AAATTC
1 TAATAGGGCTACGGCCCAGATTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGAAATTC
11642510 TGAATAGGGCTTA-GGCCCAG
1 T-AATAGGGC-TACGGCCCAG
11642530 TAAAGCTTGA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
60 24 0.35
61 41 0.60
62 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (61 bp):
TAATAGGGCTACGGCCCAGATTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
Found at i:11643623 original size:2 final size:2
Alignment explanation
Indices: 11643616--11643656 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
11643606 ACATACATGA
11643616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11643657 AAACTTAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11644566 original size:47 final size:45
Alignment explanation
Indices: 11644460--11644615 Score: 181
Period size: 47 Copynumber: 3.4 Consensus size: 45
11644450 TACACACTTT
* *
11644460 TCACAATTGGTCATTCGGCCTTATCACA-TATTCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATTATT-ACTTTCACAT-TCA
**
11644506 TCACATTAACCATTCGGCCTTATCACATGTATGTACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TAT-TACTTTCACATTCA
**
11644553 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TA-TTACTTTCACATTCA
11644600 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
11644616 ATCTTAAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
45 20 0.21
46 5 0.05
47 70 0.73
48 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATTATTACTTTCACATTCA
Found at i:11645796 original size:2 final size:2
Alignment explanation
Indices: 11645789--11645821 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11645779 GCCGAATGCG
11645789 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11645822 TCATCCAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11651101 original size:127 final size:127
Alignment explanation
Indices: 11650871--11651209 Score: 409
Period size: 127 Copynumber: 2.7 Consensus size: 127
11650861 GTCGACTTTA
* *
11650871 TAAAACAAAGGCGATGTTTGATGTTTGGAAATTCAGGAAATCGTGCCCTAACGTGCTGGGTTCGA
1 TAAAACAAAGGCGATGTTTGATATTTGGAAATTCAGGAAATCGTGCCCTAACATGCTGGGTTCGA
* * * *
11650936 TTTTTCTGTTTGTCCAAATAATCAAATATCCCTATAAAATTTCGTCCGCGTTTTTTGAACTT
66 ATTTTCTGTTTGTCCAAATAATCAAATATCCCTATAAAATTTCATCCGCGTTTTCTAAACTT
* * *
11650998 TAAAACAAATGTGATGTTTGATATTTGGAAATTCAGGAAATCGTTCCCTAACATGCTGGGCTTC-
1 TAAAACAAAGGCGATGTTTGATATTTGGAAATTCAGGAAATCGTGCCCTAACATGCTGGG-TTCG
* * * *
11651062 AATTTTCTGTTTGTCCAAATAATTAAATATCCCTTTAAAATTTCATCCGTGTTTTCTAAATTT
65 AATTTTCTGTTTGTCCAAATAATCAAATATCCCTATAAAATTTCATCCGCGTTTTCTAAACTT
* * * * * *
11651125 TAAAAC-AAGGCAATGTTCT-TTGTTTGGAAA-TCCGAGAAATCGTGCCCTAACTTGTTGGGTTT
1 TAAAACAAAGGCGATGTT-TGATATTTGGAAATTCAG-GAAATCGTGCCCTAACATGCTGGG-TT
* * *
11651187 CGAGTTTTC-GTTGGACCAAATAA
63 CGAATTTTCTGTTTGTCCAAATAA
11651210 GCGAACATCC
Statistics
Matches: 182, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
125 3 0.02
126 53 0.29
127 123 0.68
128 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (127 bp):
TAAAACAAAGGCGATGTTTGATATTTGGAAATTCAGGAAATCGTGCCCTAACATGCTGGGTTCGA
ATTTTCTGTTTGTCCAAATAATCAAATATCCCTATAAAATTTCATCCGCGTTTTCTAAACTT
Found at i:11655539 original size:24 final size:24
Alignment explanation
Indices: 11655501--11655592 Score: 105
Period size: 24 Copynumber: 3.8 Consensus size: 24
11655491 GTCAGGAGAG
* *
11655501 GATTTAGGGGTTGATAAGGGATAA
1 GATTTAGGAGCTGATAAGGGATAA
*
11655525 GATTTAGGAGCTGATAAGGGATAG
1 GATTTAGGAGCTGATAAGGGATAA
* *
11655549 GATTTAGGAGCAGATAAGGGAGGAA
1 GATTTAGGAGCTGATAAGGGA-TAA
*
11655574 -ATCTAGGAGCTGATTAAGG
1 GATTTAGGAGCTGA-TAAGG
11655593 AACAAGTGGT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
24 52 0.90
25 6 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.24
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGGGATAA
Found at i:11656360 original size:8 final size:8
Alignment explanation
Indices: 11656347--11656376 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
11656337 CTAGATGGGC
11656347 AAAAGCCG
1 AAAAGCCG
11656355 AAAAGCCG
1 AAAAGCCG
*
11656363 AAATGCCG
1 AAAAGCCG
11656371 AAAAGC
1 AAAAGC
11656377 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:11656657 original size:28 final size:28
Alignment explanation
Indices: 11656625--11656745 Score: 215
Period size: 28 Copynumber: 4.3 Consensus size: 28
11656615 TTTTATTAGA
11656625 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
11656653 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
11656681 ATACCCCTAGGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
11656709 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
11656737 ATACCCCTA
1 ATACCCCTA
11656746 GGGTTAATTT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:11656892 original size:28 final size:27
Alignment explanation
Indices: 11656851--11656940 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
11656841 AGGAAGCGTC
11656851 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
11656879 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
11656906 CTGGAGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
11656935 CTGGTG
1 CTGGTG
11656941 ACTTTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 23 0.45
29 6 0.12
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:11656909 original size:27 final size:28
Alignment explanation
Indices: 11656851--11656940 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
11656841 AGGAAGCGTC
*
11656851 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
11656879 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
*
11656906 CTGGAGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
11656935 CTGGTG
1 CTGGTG
11656941 ACTTTGTCAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 22 0.44
29 6 0.12
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:11658063 original size:11 final size:10
Alignment explanation
Indices: 11658035--11658068 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
11658025 AGCCTGTAAG
11658035 TATTCTGAAT
1 TATTCTGAAT
*
11658045 TTTTCTGAAT
1 TATTCTGAAT
11658055 ATATTCTGAAT
1 -TATTCTGAAT
11658066 TAT
1 TAT
11658069 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:11663290 original size:24 final size:24
Alignment explanation
Indices: 11663252--11663343 Score: 87
Period size: 24 Copynumber: 3.8 Consensus size: 24
11663242 GTCAGGAAAG
* *
11663252 GATTTAGGGGTTGATAAGGGATAA
1 GATTTAGGAGCTGATAAGGGATAA
* *
11663276 GATTTAGGAGCTGATAAAGGATAG
1 GATTTAGGAGCTGATAAGGGATAA
* * *
11663300 GATTTAAGAGCAGATAAGGGAGGAA
1 GATTTAGGAGCTGATAAGGGA-TAA
*
11663325 -ATCTAGGAGCTGATCAAGG
1 GATTTAGGAGCTGAT-AAGG
11663344 AACAAGTGGT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
24 49 0.91
25 5 0.09
ACGTcount: A:0.37, C:0.05, G:0.35, T:0.23
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGGGATAA
Found at i:11664595 original size:28 final size:28
Alignment explanation
Indices: 11664563--11664655 Score: 168
Period size: 28 Copynumber: 3.3 Consensus size: 28
11664553 TTTTACTAGA
11664563 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
11664591 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
11664619 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
11664647 ATACCCCTA
1 ATACCCCTA
11664656 GGGTTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:11664804 original size:28 final size:27
Alignment explanation
Indices: 11664771--11664842 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
11664761 CTGGTGGCTA
*
11664771 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
** *
11664799 TGCCACGTATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
11664826 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
11664843 ATCGGGTGAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:11664861 original size:29 final size:28
Alignment explanation
Indices: 11664771--11664861 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 28
11664761 CTGGTGGCTA
* ** * *
11664771 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAAATATCTGTTCGGGTGACAC
** * *
11664799 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCGGGTGACAC
*
11664826 TGCCACAAAATATCTGTATCGGGTGACTC
1 TGCCACAAAATATCTGT-TCGGGTGACAC
*
11664855 TGTCACA
1 TGCCACA
11664862 TTTTTTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 22 0.44
28 14 0.28
29 14 0.28
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCGGGTGACAC
Found at i:11673981 original size:40 final size:40
Alignment explanation
Indices: 11673915--11674081 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
11673905 AAATTGAATG
* * *
11673915 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
11673954 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
11673994 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
11674034 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
11674074 ATATCCGG
1 ATATCCGG
11674082 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:11682001 original size:40 final size:40
Alignment explanation
Indices: 11681917--11682066 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
11681907 AAATTGAATG
* * *
11681917 ATATCCGGGCTAAG-CCCGAAGACAATATGCTG-GA--AATT
1 ATATCCGGGCTAAGACCCGAAGGCAAT-TG-TGCGAGTGACT
* * *
11681955 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * *
11681995 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* *
11682035 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
11682067 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
37 2 0.02
38 16 0.18
39 14 0.15
40 57 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:11697697 original size:27 final size:27
Alignment explanation
Indices: 11697565--11697692 Score: 159
Period size: 27 Copynumber: 4.7 Consensus size: 27
11697555 TCTACCCTAT
* * **
11697565 AGGGGTATTTCGATAATTTTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACC
* * *
11697592 AGGGGTATTTTAGTAATTTTGCAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
11697619 ATGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
11697646 AGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTTGGTAATTTTACAAACC
11697673 AGGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
11697693 GCAAGTCGAT
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.02
27 86 0.98
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:11697710 original size:54 final size:54
Alignment explanation
Indices: 11697565--11697718 Score: 141
Period size: 54 Copynumber: 2.9 Consensus size: 54
11697555 TCTACCCTAT
* * ** * * *
11697565 AGGGGTATTTCGATAATTTTACCCTA-CAGGGGTATTTTAGTAATTTTGCAAATC
1 AGGGGTATTTTGGTAATTTTA-CAAACCAGGGGCATTTTAGTAATTTTACAAACC
* * * *
11697619 ATGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGCATTTTAGTAATTTTACAAACC
* ** *
11697673 AGGGGTATTTTGGTAATTTTGCAAGTC-GATGGCATTTTAGTAATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAG-GGGCATTTTAGTAATTT
11697719 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.04
54 79 0.96
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGGCATTTTAGTAATTTTACAAACC
Found at i:11701592 original size:38 final size:39
Alignment explanation
Indices: 11701510--11701609 Score: 175
Period size: 38 Copynumber: 2.6 Consensus size: 39
11701500 GCTCTGGTGA
11701510 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
11701549 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAG-ACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
11701587 GCTTCAGTTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
11701610 AGATCACGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
38 29 0.50
39 29 0.50
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:11701597 original size:19 final size:19
Alignment explanation
Indices: 11701536--11701601 Score: 73
Period size: 19 Copynumber: 3.4 Consensus size: 19
11701526 GGGCTTCCGT
11701536 TTAGCACTTATGTGCTTCAG
1 TTAG-ACTTATGTGCTTCAG
* *
11701556 TTAGCCTTCA-G-GCTTCCG
1 TTAGACTT-ATGTGCTTCAG
11701574 TTTAGACTTATGTGCTTCAG
1 -TTAGACTTATGTGCTTCAG
11701594 TTAGACTT
1 TTAGACTT
11701602 CGGGCTTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
18 7 0.18
19 20 0.53
20 11 0.29
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (19 bp):
TTAGACTTATGTGCTTCAG
Found at i:11705070 original size:40 final size:40
Alignment explanation
Indices: 11705026--11705208 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
11705016 GCTACTCGTT
* *
11705026 CAAATGCCTTCGGGACCTAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
11705066 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
11705106 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
11705145 TGAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
11705186 TAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
11705209 AACATCATTT
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 72 0.61
41 13 0.11
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:11713140 original size:40 final size:40
Alignment explanation
Indices: 11713063--11713244 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
11713053 GCTACTCGTT
*
11713063 CAAATGCCTTCGGGAC-TAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
11713102 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
11713142 C-AATGCCTTCGGG-CTTAG-CCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
11713179 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
11713220 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
11713245 CATCATTCGA
Statistics
Matches: 123, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
37 20 0.16
38 13 0.11
39 33 0.27
40 46 0.37
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:11713204 original size:77 final size:79
Alignment explanation
Indices: 11713065--11713240 Score: 200
Period size: 77 Copynumber: 2.3 Consensus size: 79
11713055 TACTCGTTCA
* * *
11713065 AATGCCTTCGGGAC-TAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAG-CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
11713129 TTAGTAAC-TCGCAC
65 ATAGTAACTTAGCAC
* **
11713143 AATGCCTTCGGG-CTTAGCCGGA-ATTAGTAACTCACACGAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGGA
*
11713205 TATAGTCACTTAGCAC
64 TATAGTAACTTAGCAC
*
11713221 AAAGCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
11713241 CGGACATCAT
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
76 4 0.05
77 41 0.49
78 31 0.37
79 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:11718206 original size:23 final size:23
Alignment explanation
Indices: 11718161--11718206 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
11718151 CACCGTACCT
* *
11718161 GCAAGAAAACAAAAGAGACAACA
1 GCAAGAAAAAAAAAGAGAAAACA
11718184 GCAA-AAAAAAAAAGACGAAAACA
1 GCAAGAAAAAAAAAGA-GAAAACA
11718207 ATTGTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.70, C:0.15, G:0.15, T:0.00
Consensus pattern (23 bp):
GCAAGAAAAAAAAAGAGAAAACA
Found at i:11720444 original size:131 final size:128
Alignment explanation
Indices: 11720258--11720578 Score: 423
Period size: 131 Copynumber: 2.5 Consensus size: 128
11720248 TAATTATTCA
* *
11720258 TTTATAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTTGGGGAATCATGCCCTAT
1 TTTA-AAAATTCTTTAAAA-GAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCATGCCCTAT
* * *
11720323 CGTCCTGGGTTGCAATTTCGC-GTTTGTTCAAAATAATCAAATATTCCTTTGGAATTTCACTCAT
64 CGTCCTGGGTTACAATTTC-CTGTTTGTTCAAAATAATCAAATACTCCTTTAGAATTTCACTCAT
11720387 GT
128 -T
* * * *
11720389 CTTTAAAAATTCTTTAAAATGAAGGAAATGTTCGATGTTTGGTAATTCGGAGAATCGTGCCCTAT
1 -TTTAAAAATTCTTTAAAA-GAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCATGCCCTAT
*
11720454 CGTGCTGGGTTACAATTTCCTGTTTGTTCAAAATAATCAAATACTCCTTTAGAATTTCACTCATT
64 CGTCCTGGGTTACAATTTCCTGTTTGTTCAAAATAATCAAATACTCCTTTAGAATTTCACTCATT
** * * * *
11720519 TTTTTAGATTC--TAAAACAAGGCAATGGTCAATGTTTGGAAATTCGGGGAATCATGCCCTA
1 TTTAAAAATTCTTTAAAAGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCATGCCCTA
11720579 CCGTGCTAGG
Statistics
Matches: 168, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
126 37 0.22
127 5 0.03
129 8 0.05
130 2 0.01
131 112 0.67
132 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (128 bp):
TTTAAAAATTCTTTAAAAGAAGGCAATGTTCGATGTTTGGAAATTCGGGGAATCATGCCCTATCG
TCCTGGGTTACAATTTCCTGTTTGTTCAAAATAATCAAATACTCCTTTAGAATTTCACTCATT
Found at i:11722091 original size:19 final size:19
Alignment explanation
Indices: 11722067--11722112 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
11722057 CTTTCTTTCC
11722067 TTTGCATT-CATCCCATGCA
1 TTTGCATTGCATCCCAT-CA
**
11722086 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCCCATCA
11722105 TTTGCATT
1 TTTGCATT
11722113 AAATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCCCATCA
Found at i:11723119 original size:86 final size:86
Alignment explanation
Indices: 11722889--11723180 Score: 311
Period size: 86 Copynumber: 3.3 Consensus size: 86
11722879 TGAAGATTGT
* * * * * * *
11722889 AGATCTTGTCTGCCTAAACAGTAGTGGAGCAAATCGAAGA-AG-CAAGCCTTAACCCCCTAAGTA
1 AGATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCAAAGACGGTGAA-CCTTAACCCCCTAAGTA
*
11722952 GTAGGGTAACAGGTTGAAGATTGC
65 GTAGGGTAACAGGTTG-A-ATTAC
* ** * * * * *
11722976 AGATCTTGTCTCCCAGAAGTTGCAGTGGAACAGATCAAAGACGGTGAACCTTGACCCCCTAAGCA
1 AGATCTTGTCTCCC-TAAGCAGTAGTAGAGCAGATCAAAGACGGTGAACCTTAACCCCCTAAGTA
*
11723041 GTAGGGTAACAGGCTGAATTAC
65 GTAGGGTAACAGGTTGAATTAC
* * * *
11723063 AGATCTTATCTCCCTAAGCAGTAGTTGAGCAGATCAAAGATGGTGAACCTTAACCCCTTAAGTAG
1 AGATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCAAAGACGGTGAACCTTAACCCCCTAAGTAG
11723128 TAGGGTAACAGGTTGAGAATTAC
66 TAGGGTAACAGGTT--GAATTAC
11723151 A-AGTCTTGTCTCCCTAAGCAGTAGTAGAGC
1 AGA-TCTTGTCTCCCTAAGCAGTAGTAGAGC
11723181 GGGTTGAAAT
Statistics
Matches: 170, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
86 54 0.32
87 31 0.18
88 52 0.31
89 31 0.18
90 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (86 bp):
AGATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCAAAGACGGTGAACCTTAACCCCCTAAGTAG
TAGGGTAACAGGTTGAATTAC
Done.