Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 402 of 770
Found at i:123635434 original size:31 final size:31
Alignment explanation
Indices: 123635396--123635490 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
123635386 CCTTTTCATA
*
123635396 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
123635427 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
123635458 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
123635489 TT
1 TT
123635491 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:123635732 original size:23 final size:24
Alignment explanation
Indices: 123635682--123635822 Score: 191
Period size: 23 Copynumber: 6.0 Consensus size: 24
123635672 GCTTTATCAT
*
123635682 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
123635707 ATAACT-GGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
123635730 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
123635753 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
123635777 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
123635800 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
123635823 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 5, Indels: 9
0.88 0.04 0.07
Matches are distributed among these distances:
23 60 0.56
24 41 0.38
25 6 0.06
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:123635781 original size:70 final size:71
Alignment explanation
Indices: 123635681--123635822 Score: 216
Period size: 70 Copynumber: 2.0 Consensus size: 71
123635671 TGCTTTATCA
*
123635681 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
123635746 CCCTTT
66 CCCTTT
* * **
123635752 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
123635815 GCCCTTT
65 GCCCTTT
123635822 T
1 T
123635823 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 52 0.80
71 13 0.20
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:123635822 original size:47 final size:47
Alignment explanation
Indices: 123635682--123635822 Score: 189
Period size: 47 Copynumber: 3.0 Consensus size: 47
123635672 GCTTTATCAT
* * *
123635682 ATAACTGGAGGCCT-AGCCTCTTTTAATAACT-GGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
123635730 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
123635777 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
123635823 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 22 0.26
47 52 0.60
48 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:123635898 original size:20 final size:20
Alignment explanation
Indices: 123635873--123635932 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
123635863 TATGATTACC
123635873 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
123635893 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
123635913 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
123635933 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:123635903 original size:11 final size:11
Alignment explanation
Indices: 123635873--123635927 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
123635863 TATGATTACC
123635873 TCATGTGCATA
1 TCATGTGCATA
*
123635884 TCA--TACATA
1 TCATGTGCATA
123635893 TCATGTGCATA
1 TCATGTGCATA
* *
123635904 TCA--TACATT
1 TCATGTGCATA
123635913 TCATGTGCATA
1 TCATGTGCATA
123635924 TCAT
1 TCAT
123635928 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:123636007 original size:25 final size:25
Alignment explanation
Indices: 123635975--123636022 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
123635965 ATACATAAAC
* * *
123635975 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
123636000 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
123636023 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:123643570 original size:31 final size:31
Alignment explanation
Indices: 123643532--123643595 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
123643522 CCTTTTCATA
123643532 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
123643563 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
123643594 TT
1 TT
123643596 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:123643838 original size:24 final size:24
Alignment explanation
Indices: 123643787--123643929 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
123643777 GCTTTATCAT
*
123643787 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
123643812 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
123643836 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
123643859 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
123643883 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
123643907 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
123643930 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:123643866 original size:47 final size:48
Alignment explanation
Indices: 123643787--123643928 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
123643777 GCTTTATCAT
* *
123643787 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
123643836 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
123643883 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
123643929 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:123643887 original size:71 final size:72
Alignment explanation
Indices: 123643786--123643929 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
123643776 TGCTTTATCA
*
123643786 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
123643851 GCCCTTT
66 GCCCTTT
* * **
123643858 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
123643921 AGCCCTTT
65 AGCCCTTT
123643929 T
1 T
123643930 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:123644005 original size:20 final size:20
Alignment explanation
Indices: 123643980--123644039 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
123643970 TATGATTACC
123643980 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
123644000 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
123644020 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
123644040 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:123644010 original size:11 final size:11
Alignment explanation
Indices: 123643980--123644034 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
123643970 TATGATTACC
123643980 TCATGTGCATA
1 TCATGTGCATA
*
123643991 TCA--TACATA
1 TCATGTGCATA
123644000 TCATGTGCATA
1 TCATGTGCATA
* *
123644011 TCA--TACATT
1 TCATGTGCATA
123644020 TCATGTGCATA
1 TCATGTGCATA
123644031 TCAT
1 TCAT
123644035 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:123644114 original size:25 final size:25
Alignment explanation
Indices: 123644082--123644129 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
123644072 ATACATAAAC
* * *
123644082 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
123644107 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
123644130 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:123646533 original size:30 final size:30
Alignment explanation
Indices: 123646499--123646559 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
123646489 TCCTTAACTC
123646499 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
123646529 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
123646559 A
1 A
123646560 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:123651375 original size:43 final size:43
Alignment explanation
Indices: 123651327--123651411 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
123651317 AAAGCTCATA
*
123651327 CAATGCCAATGTCCCA-A-ATGTGGTCTTACATGTAATAAAATAT
1 CAATGCCAATGTCCCATACA-G-GGTCTTACATGAAATAAAATAT
* *
123651370 CAATGCCACTGTCCCATACAGGGTCTTACATGAAATCAAATA
1 CAATGCCAATGTCCCATACAGGGTCTTACATGAAATAAAATA
123651412 CGATGTCGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 34 0.92
44 2 0.05
45 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (43 bp):
CAATGCCAATGTCCCATACAGGGTCTTACATGAAATAAAATAT
Found at i:123651496 original size:44 final size:44
Alignment explanation
Indices: 123651431--123651536 Score: 151
Period size: 44 Copynumber: 2.4 Consensus size: 44
123651421 TGTCCAGACA
* * * *
123651431 TGGTCATACATGTAAATCATAAGTCGATGCCAACGTCCTAGACG
1 TGGTCTTACACGTAAATCATAAGTCGATGCCAACGTCCCAAACG
* *
123651475 TTGTCTTACACGTATATCATAAGTCGATGCCAACGTCCCAAACG
1 TGGTCTTACACGTAAATCATAAGTCGATGCCAACGTCCCAAACG
123651519 TGGTCTTACACG-AAATCA
1 TGGTCTTACACGTAAATCA
123651537 CATATCAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
43 5 0.09
44 49 0.91
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (44 bp):
TGGTCTTACACGTAAATCATAAGTCGATGCCAACGTCCCAAACG
Found at i:123651842 original size:15 final size:17
Alignment explanation
Indices: 123651821--123651860 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
123651811 GATCTAAACG
*
123651821 CATTCAAATTTGAC-TT
1 CATTCAAATTTCACATT
123651837 -ATTC-AATTTCACATT
1 CATTCAAATTTCACATT
123651852 CATTCAAAT
1 CATTCAAAT
123651861 CAATCCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 7 0.35
15 6 0.30
16 4 0.20
17 3 0.15
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (17 bp):
CATTCAAATTTCACATT
Found at i:123655911 original size:37 final size:36
Alignment explanation
Indices: 123655860--123656038 Score: 242
Period size: 37 Copynumber: 5.0 Consensus size: 36
123655850 GATGTGTATG
*
123655860 AATGTTCGA-GTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGATGTGATATCCGGGCTAAGCCCGAAGGC
*
123655895 AATGTGCGAATATGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCG-ATGTGATATCCGGGCTAAGCCCGAAGGC
* *
123655932 ATTGTGTGAT-TGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGATGTGATATCCGGGCTAAGCCCGAAGGC
123655967 AAT-TGCGA-GTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGATGTGATATCCGGGCTAAGCCCGAAGGC
*
123656001 AATTGTGC-ATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AA-TGTGCGA-TGTGATATCCGGGCTAAG-CCCGAAGGC
123656039 TTTGTGCGGG
Statistics
Matches: 129, Mismatches: 7, Indels: 13
0.87 0.05 0.09
Matches are distributed among these distances:
34 31 0.24
35 36 0.28
36 6 0.05
37 47 0.36
38 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (36 bp):
AATGTGCGATGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:123655956 original size:72 final size:71
Alignment explanation
Indices: 123655869--123656038 Score: 247
Period size: 72 Copynumber: 2.4 Consensus size: 71
123655859 GAATGTTCGA
123655869 GTGATATCCGGGCTAAGCCCGAAGGCAATGTGCGAATATGATATCCGGGCTAAGCCCGAAGGC-A
1 GTGATATCCGGGCTAAGCCCGAAGGCAAT-TGCG-A-ATGATATCCGGGCTAAGCCCGAAGGCAA
*
123655933 TTGTGTGA-T
63 TTGTG-CATT
*
123655942 -TGATATCCGGGCTAAGCCCGAAGGCAATTGCGAGTGATATCCGGGCTAAGCCCGAAGGCAATTG
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGCGAATGATATCCGGGCTAAGCCCGAAGGCAATTG
123656006 TGCATT
66 TGCATT
*
123656012 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
123656039 TTTGTGCGGG
Statistics
Matches: 90, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
69 26 0.29
70 8 0.09
71 19 0.21
72 37 0.41
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (71 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGCGAATGATATCCGGGCTAAGCCCGAAGGCAATTG
TGCATT
Found at i:123663902 original size:39 final size:39
Alignment explanation
Indices: 123663858--123664053 Score: 268
Period size: 39 Copynumber: 5.0 Consensus size: 39
123663848 GATGTGTATG
* * *
123663858 AATGTGCAAATTGTGATATCCGGGCTAAACCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
** *
123663897 AATGTGCGAACTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
*
123663936 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
123663974 AATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 AAT-GTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
123664014 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
123664054 TTTGTGCGGG
Statistics
Matches: 139, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
38 2 0.01
39 125 0.90
40 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (39 bp):
AATGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:123663954 original size:78 final size:79
Alignment explanation
Indices: 123663868--123664053 Score: 313
Period size: 78 Copynumber: 2.4 Consensus size: 79
123663858 AATGTGCAAA
123663868 TTGTGATATCCGGGCTAAACCCGAAGGCAAAT-GTGCGAACTATGATATCCGGGCTAAGCCCGAA
1 TTGTGATATCCGGGCTAAACCCGAAGGCAAATGGTGCGAACTATGATATCCGGGCTAAGCCCGAA
123663932 GGCAATTGTGCGAG
66 GGCAATTGTGCGAG
* *
123663946 TTGTGATATCCGGGCTAAGCCCGAAGGC-AATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAA
1 TTGTGATATCCGGGCTAAACCCGAAGGCAAATGGTGCGAACTATGATATCCGGGCTAAGCCCGAA
123664010 GGCAATTGTGCGAG
66 GGCAATTGTGCGAG
* *
123664024 TTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TTGTGATATCCGGGCTAA-ACCCGAAGGCA
123664054 TTTGTGCGGG
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
77 3 0.03
78 89 0.88
79 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (79 bp):
TTGTGATATCCGGGCTAAACCCGAAGGCAAATGGTGCGAACTATGATATCCGGGCTAAGCCCGAA
GGCAATTGTGCGAG
Found at i:123666988 original size:18 final size:19
Alignment explanation
Indices: 123666967--123667002 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
123666957 AATAAAGAAA
*
123666967 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
123666985 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
123667003 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:123668371 original size:58 final size:59
Alignment explanation
Indices: 123668270--123668460 Score: 312
Period size: 58 Copynumber: 3.2 Consensus size: 59
123668260 GACAAGATTG
* * * * * *
123668270 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
123668330 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
123668388 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
123668447 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
123668461 GATTCACTAT
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
58 55 0.44
59 54 0.44
60 15 0.12
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:123668430 original size:88 final size:87
Alignment explanation
Indices: 123668300--123668460 Score: 304
Period size: 88 Copynumber: 1.8 Consensus size: 87
123668290 AAAATTGTAC
123668300 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
123668365 AGTGTGCGAGCTGAAAATATAT
66 AGTGTGCGAGCTGAAAATATAT
*
123668387 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
123668452 AAGTGTGCG
65 AAGTGTGCG
123668461 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
87 23 0.32
88 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (87 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTA
AGTGTGCGAGCTGAAAATATAT
Found at i:123668472 original size:29 final size:29
Alignment explanation
Indices: 123668300--123668460 Score: 304
Period size: 29 Copynumber: 5.5 Consensus size: 29
123668290 AAAATTGTAC
*
123668300 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123668329 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123668358 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123668387 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
123668417 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123668446 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
123668461 GATTCACTAT
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
29 101 0.78
30 29 0.22
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:123671347 original size:18 final size:19
Alignment explanation
Indices: 123671326--123671361 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
123671316 AATAAAGAAA
*
123671326 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
123671344 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
123671362 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:123672829 original size:29 final size:29
Alignment explanation
Indices: 123672658--123672817 Score: 295
Period size: 29 Copynumber: 5.5 Consensus size: 29
123672648 AAAATTGTAC
*
123672658 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123672687 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123672716 AGCACTAAGTGTGC-AGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123672744 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
123672774 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123672803 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
123672818 GATTCACTAT
Statistics
Matches: 128, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
28 28 0.22
29 71 0.55
30 29 0.23
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:123675699 original size:18 final size:19
Alignment explanation
Indices: 123675678--123675713 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
123675668 AATAAAGAAA
*
123675678 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
123675696 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
123675714 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:123677054 original size:29 final size:29
Alignment explanation
Indices: 123677012--123677142 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
123677002 AAAATTGTAC
*
123677012 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123677041 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123677070 AGCACTAAGTGTGC-AGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
123677098 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
123677128 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
123677143 GATTCACTAT
Statistics
Matches: 99, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
28 28 0.28
29 51 0.52
30 20 0.20
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:123677099 original size:57 final size:59
Alignment explanation
Indices: 123676982--123677142 Score: 245
Period size: 57 Copynumber: 2.7 Consensus size: 59
123676972 GACAAGATTG
* * * * *
123676982 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
*
123677042 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGC-AGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
123677099 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCG
123677143 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
57 37 0.40
58 36 0.39
59 5 0.05
60 15 0.16
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:123677154 original size:57 final size:58
Alignment explanation
Indices: 123676982--123677145 Score: 231
Period size: 58 Copynumber: 2.8 Consensus size: 58
123676972 GACAAGATTG
* * * * * *
123676982 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGGA-TGAAAATATATA
* *
123677042 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGGATGAAAATATATA
123677099 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGGAT
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGGAT
123677146 TCACTATATG
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
57 35 0.38
58 38 0.41
59 5 0.05
60 15 0.16
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGGATGAAAATATATA
Found at i:123684250 original size:22 final size:22
Alignment explanation
Indices: 123684222--123684344 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
123684212 GAATGCATAT
123684222 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
123684244 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
123684268 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
123684291 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
123684315 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
123684338 ATGTGAT
1 ATGTGAT
123684345 GAATGTGAGC
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:123684275 original size:47 final size:47
Alignment explanation
Indices: 123684199--123684435 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
123684189 TTAGGATTTT
123684199 ATGTGATGAATGTGA--ATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
123684244 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
123684291 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
123684338 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
123684385 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
123684430 ATGTGA
1 ATGTGA
123684436 AATATATATG
Statistics
Matches: 181, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
45 40 0.22
47 141 0.78
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:123684393 original size:25 final size:25
Alignment explanation
Indices: 123684318--123684393 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
123684308 ATGCATATAT
123684318 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
123684343 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
123684365 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
123684390 GTGA
1 GTGA
123684394 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:123684445 original size:47 final size:45
Alignment explanation
Indices: 123684199--123684525 Score: 300
Period size: 47 Copynumber: 7.0 Consensus size: 45
123684189 TTAGGATTTT
* *
123684199 ATGTGATGAATGTG-A-ATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGC--ATATGTGGTAAGGCCGAATGGCCA
* * *
123684244 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGC--ATATGTGGTAAGGCCGAATGGCCA
* * *
123684291 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGC--ATATGTGGTAAGGCCGAATGGCCA
* *
123684338 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATGTG-G-TAAGGCCGAATGGCCA
* * *
123684385 ATGTGGTGAATATGAACATGCATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATATGAACATGCATATGTGGTAAGGCCGAATGGCCA
* * *
123684430 ATGTGAAAT-ATATATGAGATATGCATATGTGGTAAAGCCGAATGGTCA
1 ATGTG--ATGA-ATATGA-ACATGCATATGTGGTAAGGCCGAATGGCCA
* * * *
123684478 ATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 ATGTG--AT-GA-ATATGA-ACATGCATATGTGGTAAGGCCGAATGGC
123684526 TAGTGTGAAA
Statistics
Matches: 261, Mismatches: 11, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
45 40 0.15
46 2 0.01
47 146 0.56
48 38 0.15
50 35 0.13
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (45 bp):
ATGTGATGAATATGAACATGCATATGTGGTAAGGCCGAATGGCCA
Found at i:123684512 original size:50 final size:50
Alignment explanation
Indices: 123684394--123684538 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
123684384 AATGTGGTGA
*
123684394 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
123684441 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
123684491 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
123684539 GTAGGCGATG
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
47 6 0.07
48 34 0.37
49 3 0.03
50 48 0.53
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:123684556 original size:50 final size:50
Alignment explanation
Indices: 123684406--123684562 Score: 198
Period size: 50 Copynumber: 3.2 Consensus size: 50
123684396 ATGAACATGC
123684406 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGC--
1 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGCGT
123684454 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATAT--GT
1 ATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATATATATGAGATATGCGT
* * * * *
123684504 ATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATATGTAGGCGATGTGCGT
1 ATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATGAGATATGCGT
123684554 ATATTGTGG
1 ATA-TGTGG
123684563 CCGAACGACC
Statistics
Matches: 96, Mismatches: 5, Indels: 13
0.84 0.04 0.11
Matches are distributed among these distances:
48 40 0.42
49 5 0.05
50 46 0.48
51 5 0.05
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATGAGATATGCGT
Found at i:123684796 original size:37 final size:37
Alignment explanation
Indices: 123684688--123684796 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
123684678 GGAAATATAT
*
123684688 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
123684725 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
123684762 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
123684797 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:123686387 original size:40 final size:40
Alignment explanation
Indices: 123686066--123686375 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
123686056 GAGAATTGAG
123686066 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
123686106 AGTGATGTATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
123686145 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
123686184 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
123686224 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
123686264 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
123686304 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
123686344 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
123686376 ATCATGCTGG
Statistics
Matches: 251, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
39 77 0.31
40 174 0.69
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:123690581 original size:47 final size:47
Alignment explanation
Indices: 123690530--123690814 Score: 468
Period size: 47 Copynumber: 6.1 Consensus size: 47
123690520 TTAGGATTTT
*
123690530 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
123690577 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCC-
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
123690623 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
123690670 ATGTGATGAATGTGAGCATGCATATATGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
123690717 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
123690764 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
123690809 ATGTGA
1 ATGTGA
123690815 ATGGTCAATG
Statistics
Matches: 225, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
45 25 0.11
46 46 0.20
47 154 0.68
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:123690643 original size:93 final size:93
Alignment explanation
Indices: 123690530--123690814 Score: 457
Period size: 93 Copynumber: 3.1 Consensus size: 93
123690520 TTAGGATTTT
*
123690530 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
123690595 TGCATATATGTGATAAGGCCGAATGGCC
66 TGCATATATGTGATAAGGCCGAATGGCC
123690623 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
123690688 TGCATATATGCGATAAGGCCGAATGGCC
66 TGCATATATGTGATAAGGCCGAATGGCC
* * * *
123690716 AATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAC
1 -ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
* * *
123690781 ATGC--ATATGTGGTAAAGCCGAATGGTCA
65 ATGCATATATGTGATAAGGCCGAATGG-CC
123690809 ATGTGA
1 ATGTGA
123690815 ATGGTCAATG
Statistics
Matches: 180, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
92 24 0.13
93 92 0.51
94 64 0.36
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (93 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATATGTGATAAGGCCGAATGGCC
Found at i:123690690 original size:140 final size:139
Alignment explanation
Indices: 123690530--123690814 Score: 464
Period size: 140 Copynumber: 2.0 Consensus size: 139
123690520 TTAGGATTTT
*
123690530 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* * *
123690595 TGCATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAGCATGCATATATGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC--ATATGTGATAAAG
123690659 CCGAATGGCCA
129 CCGAATGGCCA
*
123690670 ATGTGATGAATGTGAGCATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* * *
123690735 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATGTGGTAAAGCC
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATGTGATAAAGCC
*
123690800 GAATGGTCA
131 GAATGGCCA
123690809 ATGTGA
1 ATGTGA
123690815 ATGGTCAATG
Statistics
Matches: 135, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
139 27 0.20
140 90 0.67
141 18 0.13
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (139 bp):
ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATGTGATAAAGCC
GAATGGCCA
Found at i:123690772 original size:25 final size:25
Alignment explanation
Indices: 123690699--123690772 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 25
123690689 GCATATATGC
*
123690699 GATAAGGCCGAATGGCCAATGTGAT
1 GATAAGGCCGAATGGCCAATGTGGT
* * *
123690724 GA-ATGTG-AGCAT-G-CATATGT-GT
1 GATAAG-GCCGAATGGCCA-ATGTGGT
123690746 GATAAGGCCGAATGGCCAATGTGGT
1 GATAAGGCCGAATGGCCAATGTGGT
123690771 GA
1 GA
123690773 ATATGAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (25 bp):
GATAAGGCCGAATGGCCAATGTGGT
Found at i:123690816 original size:13 final size:13
Alignment explanation
Indices: 123690800--123690828 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
123690790 TGGTAAAGCC
123690800 GAATGGTCAATGT
1 GAATGGTCAATGT
123690813 GAATGGTCAATGT
1 GAATGGTCAATGT
123690826 GAA
1 GAA
123690829 ATATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (13 bp):
GAATGGTCAATGT
Found at i:123693276 original size:28 final size:28
Alignment explanation
Indices: 123693230--123693307 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
123693220 TCAAATATGG
*
123693230 CACTTAGTGTACGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* * *
123693258 CACTTAATGTGCGAGATATTGAGAATGT
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
123693286 CACTTAGTGTGCAAAATATTGA
1 CACTTAGTGTGCGAAATATTGA
123693308 ATGATTAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:123693424 original size:39 final size:39
Alignment explanation
Indices: 123693380--123693679 Score: 487
Period size: 39 Copynumber: 7.7 Consensus size: 39
123693370 GACTTTATAA
*
123693380 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
123693419 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
123693458 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
123693497 TGGTGTTATATCCGGGCTAAGT-CCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
123693535 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
**
123693574 TGGTGTTATATCCGGGCTAAACCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
123693613 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
* *
123693652 TGGTATTATATCCGAGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
123693680 CATGCTTTGT
Statistics
Matches: 247, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
38 38 0.15
39 189 0.77
40 20 0.08
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:123693662 original size:155 final size:155
Alignment explanation
Indices: 123693380--123693665 Score: 493
Period size: 155 Copynumber: 1.8 Consensus size: 155
123693370 GACTTTATAA
* ** *
123693380 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTGTTATATCCGGGCTAAGTCCTG
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAACCCCG
*
123693445 AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCC
66 AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
123693510 GGGCTAAGTCCGAAGGCATTCGTGC
131 GGGCTAAGTCCGAAGGCATTCGTGC
123693535 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAACCCCG
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAACCCCG
* *
123693600 AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTATATC
66 AAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTATTATATC
123693664 CG
130 CG
123693666 AGCTTAAAGT
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
155 111 0.90
156 12 0.10
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (155 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAACCCCG
AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
GGGCTAAGTCCGAAGGCATTCGTGC
Found at i:123696767 original size:39 final size:39
Alignment explanation
Indices: 123696724--123696803 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
123696714 CACATTTTAG
*
123696724 TCCCTCAAAATCTGATTTTTACAATTTAGCTCAACAAAC
1 TCCCTCAAAATCTAATTTTTACAATTTAGCTCAACAAAC
123696763 TCCCTCAAAATCTAATTTTTACAATTTAGCTCAACAAAC
1 TCCCTCAAAATCTAATTTTTACAATTTAGCTCAACAAAC
123696802 TC
1 TC
123696804 AAATTCATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (39 bp):
TCCCTCAAAATCTAATTTTTACAATTTAGCTCAACAAAC
Found at i:123703122 original size:42 final size:43
Alignment explanation
Indices: 123703045--123703156 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 43
123703035 AGACCTAGTT
* *
123703045 TTACATGT-AATCAAATATCGATGCCACTATCCCAGACAGGGTC
1 TTACACGTAAATCAAATA-CGATGCCACTATCCCAGACAGGGCC
* *
123703088 TTACACG-AAATCAAATACGATGCCGA-TGTCCCAGACATGGCC
1 TTACACGTAAATCAAATACGATGCC-ACTATCCCAGACAGGGCC
123703130 TTACACGTAAATCTCAAAT-CGATGCCA
1 TTACACGTAAA--TCAAATACGATGCCA
123703157 ACACCCCAGA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
42 27 0.45
43 20 0.33
44 7 0.12
45 6 0.10
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
TTACACGTAAATCAAATACGATGCCACTATCCCAGACAGGGCC
Found at i:123709765 original size:31 final size:31
Alignment explanation
Indices: 123709727--123709790 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
123709717 CCTTTTCATA
123709727 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
123709758 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
123709789 TT
1 TT
123709791 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:123710046 original size:23 final size:24
Alignment explanation
Indices: 123709982--123710123 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
123709972 GCTTTATCAT
*
123709982 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
123710007 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
123710031 ATAACT-GGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
123710053 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
123710077 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
123710101 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
123710124 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 6 0.06
23 30 0.28
24 61 0.56
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:123710082 original size:70 final size:72
Alignment explanation
Indices: 123709981--123710123 Score: 211
Period size: 70 Copynumber: 2.0 Consensus size: 72
123709971 TGCTTTATCA
*
123709981 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACT-GGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
123710045 GCCCTTT
66 GCCCTTT
* * **
123710052 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
123710115 AGCCCTTT
65 AGCCCTTT
123710123 T
1 T
123710124 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 36 0.55
71 29 0.45
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:123710199 original size:20 final size:20
Alignment explanation
Indices: 123710174--123710233 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
123710164 TATGATTACC
123710174 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
123710194 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
123710214 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
123710234 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:123710204 original size:11 final size:11
Alignment explanation
Indices: 123710174--123710228 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
123710164 TATGATTACC
123710174 TCATGTGCATA
1 TCATGTGCATA
*
123710185 TCA--TACATA
1 TCATGTGCATA
123710194 TCATGTGCATA
1 TCATGTGCATA
* *
123710205 TCA--TACATT
1 TCATGTGCATA
123710214 TCATGTGCATA
1 TCATGTGCATA
123710225 TCAT
1 TCAT
123710229 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:123710308 original size:25 final size:25
Alignment explanation
Indices: 123710276--123710323 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
123710266 ATACATAAAC
* * *
123710276 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
123710301 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
123710324 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:123717656 original size:26 final size:27
Alignment explanation
Indices: 123717581--123717678 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
123717571 TTTAGTTTAC
*
123717581 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATA-CCTTCGATTTG
* * *
123717608 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTCGATTTG
*
123717635 T-AAATTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTCGATTTG
123717661 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
123717679 CTCAATTTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 29 0.48
27 31 0.52
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTCGATTTG
Found at i:123717679 original size:53 final size:53
Alignment explanation
Indices: 123717583--123717686 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
123717573 TAGTTTACTA
* * *
123717583 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTGT
* *
123717636 AAATTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTT
1 AAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTT
123717687 ACAGAATTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
52 8 0.18
53 36 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTGT
Found at i:123717967 original size:27 final size:27
Alignment explanation
Indices: 123717675--123717966 Score: 324
Period size: 27 Copynumber: 10.9 Consensus size: 27
123717665 ATTACCAAAG
* *
123717675 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
123717702 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
123717729 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
123717756 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123717783 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
123717810 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123717837 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123717864 TACCCTCGATTT-CAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
123717890 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123717917 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123717944 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
123717967 AAAATACCCT
Statistics
Matches: 232, Mismatches: 26, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 22 0.09
27 207 0.89
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:123717974 original size:27 final size:27
Alignment explanation
Indices: 123717783--123718163 Score: 100
Period size: 27 Copynumber: 14.1 Consensus size: 27
123717773 ATTACCGTTT
** ****
123717783 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ***
123717810 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
123717837 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
**
123717864 TACCCTCGATTT-CAAAATTATCGT--TT
1 TACCCTCGATTTACAAAATTA-C-TAAAA
* * * ***
123717890 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
123717917 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
123717944 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123717971 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *
123717998 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * * * **
123718025 TACCTTGGCTTGT--GAAATTACCGAAA
1 TACCCTCGATT-TACAAAATTACTAAAA
* ** *
123718051 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
123718078 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
123718105 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
123718134 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
123718161 TAC
1 TAC
123718164 TTTTGGTTTG
Statistics
Matches: 291, Mismatches: 43, Indels: 40
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.01
26 42 0.14
27 219 0.75
28 9 0.03
29 19 0.07
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:123717975 original size:107 final size:108
Alignment explanation
Indices: 123717622--123717976 Score: 326
Period size: 107 Copynumber: 3.3 Consensus size: 108
123717612 AATACTGAAA
** ** * ** **** *
123717622 TACCCTCGATTT-GTAAATTACCGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCTCAATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAAAATTACCGTTTTACCCTCGATT
* ** * * * **
123717686 TACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTT
66 TACTGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
* ** *
123717729 TACCC-CTGATTTACATAATTATCGT--TTTACCCTCGACTTACAGAATTACCGTTTTACCCTCG
1 TACCCTC-GATTTACAAAATTA-C-TAAAATACCCTCGACTTACAAAATTACCGTTTTACCCTCG
* *
123717791 ATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTT
63 ATTTACTGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
* * *** * * *
123717837 TACCCTTGATTTACAGAATTACTATTTTACCCTCGA-TTTCAAAATTATCGTTTTACCGTCGATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAAAATTACCGTTTTACCCTCGATT
123717901 TA-TAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
66 TACT-GAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
123717944 TACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTACAAAATTACTAAAATACCCT
123717977 TAGTTTGTAA
Statistics
Matches: 204, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
106 3 0.01
107 102 0.50
108 98 0.48
109 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (108 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTCGACTTACAAAATTACCGTTTTACCCTCGATT
TACTGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
Found at i:123718002 original size:134 final size:134
Alignment explanation
Indices: 123717732--123718002 Score: 314
Period size: 134 Copynumber: 2.0 Consensus size: 134
123717722 ACCGTTTTAC
* *
123717732 CCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTAC
1 CCCTGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTAC
* * * * * *** * *
123717797 TGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTAT
66 AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCAA
**
123717862 TTTA
131 AATA
* * * * *
123717866 CCCTCGATTT-CAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATTTA
1 CCCT-GATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTA
*
123717930 CAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTA-A-AATTAC
65 CAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT-GATT-TACAGAATTAC
123717993 CAAAATA
128 CAAAATA
123718000 CCC
1 CCC
123718003 CTAGTTTGTA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
134 103 0.90
135 9 0.08
136 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (134 bp):
CCCTGATTTACAAAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTAC
AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCAA
AATA
Found at i:123718064 original size:53 final size:53
Alignment explanation
Indices: 123717944--123718081 Score: 170
Period size: 53 Copynumber: 2.6 Consensus size: 53
123717934 ATTACTATTT
* ** * *
123717944 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATA-CCTTAGCTTGTAAAATTACCAAAA
* * * *
123717998 TACCC-CTAGTTTGTAAAATTACCAAAATACCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCTTAGCTTGTAAAATTACCAAAA
123718051 TACCCTCAATTTGTAAAATTACCAAAATACC
1 TACCCTCAATTTGTAAAATTACCAAAATACC
123718082 CCTGATTTAC
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
53 49 0.68
54 23 0.32
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCTTAGCTTGTAAAATTACCAAAA
Found at i:123718169 original size:27 final size:27
Alignment explanation
Indices: 123718121--123718172 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
123718111 TGACTTTCTA
123718121 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
**
123718148 AAAATTACT-GAAATACTTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
123718173 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:123718284 original size:27 final size:26
Alignment explanation
Indices: 123718234--123718316 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
123718224 TAGGTAAAAA
123718234 GACCGTAAAGCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTGTAGGGTAAAGT
*
123718260 GATCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
* * *
123718287 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
123718314 GAC
1 GAC
123718317 GAATATGCCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.24
27 34 0.68
28 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:123719615 original size:20 final size:20
Alignment explanation
Indices: 123719555--123719615 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
123719545 ATAAATATGG
*
123719555 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
123719575 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123719595 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123719615 T
1 T
123719616 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:123719692 original size:24 final size:24
Alignment explanation
Indices: 123719665--123719807 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
123719655 GAGGAAGTGA
123719665 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123719689 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123719713 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
123719736 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
123719760 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
123719784 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
123719808 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:123719758 original size:47 final size:47
Alignment explanation
Indices: 123719665--123719807 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
123719655 GAGGAAGTGA
123719665 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
123719713 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
123719760 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
123719808 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:123719781 original size:71 final size:72
Alignment explanation
Indices: 123719665--123719808 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
123719655 GAGGAAGTGA
*
123719665 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
123719728 CCAGTTAT
65 CCAGTTAT
** * *
123719736 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
123719801 CAGTTAT
66 CAGTTAT
123719808 A
1 A
123719809 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:123720034 original size:31 final size:31
Alignment explanation
Indices: 123719999--123720093 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
123719989 CGTTTACAGT
123719999 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123720030 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123720061 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
123720092 AA
1 AA
123720094 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:123722850 original size:27 final size:28
Alignment explanation
Indices: 123722820--123722920 Score: 111
Period size: 27 Copynumber: 3.7 Consensus size: 28
123722810 TTTAGTTTAC
123722820 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
123722847 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
123722874 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
123722901 TAAAATTACC-AAAGTACCCT
1 TAAAATTACCGAAA-TACCCT
123722921 CATTTACAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.84
28 3 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:123722919 original size:54 final size:53
Alignment explanation
Indices: 123722820--123722925 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
123722810 TTTAGTTTAC
* *
123722820 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTC-ATTTG
* * *
123722874 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCATTT
123722926 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCATTTG
Found at i:123723207 original size:27 final size:27
Alignment explanation
Indices: 123722915--123723206 Score: 333
Period size: 27 Copynumber: 10.9 Consensus size: 27
123722905 ATTACCAAAG
*
123722915 TACCCTC-ATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
123722941 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
123722968 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
123722995 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123723022 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123723049 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123723076 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123723103 TACCCTCGATTTTCAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
123723130 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123723157 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123723184 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
123723207 AAAATACCCT
Statistics
Matches: 231, Mismatches: 28, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.00
26 6 0.03
27 222 0.96
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:123723214 original size:27 final size:27
Alignment explanation
Indices: 123723076--123723404 Score: 114
Period size: 27 Copynumber: 12.1 Consensus size: 27
123723066 ATTACTGTTT
* * ***
123723076 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* **
123723103 TACCCTCGATTTTCAAAATTATCGT--TT
1 TACCCTCGATTTACAAAATTA-C-TAAAA
* * * ***
123723130 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
123723157 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
123723184 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
123723211 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123723238 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
123723265 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123723292 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
123723319 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
123723346 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
123723375 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
123723402 TAC
1 TAC
123723405 TTTGGTTTGT
Statistics
Matches: 243, Mismatches: 44, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 211 0.87
28 8 0.03
29 20 0.08
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:123723242 original size:54 final size:54
Alignment explanation
Indices: 123723184--123723323 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
123723174 ATTACTATTT
* ** * *
123723184 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
* * *
123723238 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
123723292 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
123723324 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
Found at i:123723346 original size:54 final size:52
Alignment explanation
Indices: 123723184--123723351 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 52
123723174 ATTACTATTT
* ** * * *
123723184 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTA-CAGAAA
* * * *
123723238 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTACAGAAA
*
123723292 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTT-CAAA-TTACAGAAA
123723346 TACCCT
1 TACCCT
123723352 TGACTTTCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 86 0.90
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTCAAATTACAGAAA
Found at i:123723409 original size:26 final size:27
Alignment explanation
Indices: 123723362--123723412 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
123723352 TGACTTTCTA
123723362 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
123723389 AAAATTACT-GAAATA-CTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
123723413 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.36
27 13 0.59
28 1 0.05
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:123723496 original size:27 final size:27
Alignment explanation
Indices: 123723466--123723557 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
123723456 ACCCCTATTA
*
123723466 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
123723493 GGTAAAGTGATCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
123723520 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
123723547 GGTAAAATGAC
1 GGTAAAATGAC
123723558 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:123724854 original size:20 final size:20
Alignment explanation
Indices: 123724794--123724854 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
123724784 ATAAATATGG
*
123724794 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
123724814 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123724834 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123724854 T
1 T
123724855 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:123724931 original size:24 final size:24
Alignment explanation
Indices: 123724904--123725046 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
123724894 GAGGAAGTGA
123724904 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123724928 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123724952 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
123724975 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
123724999 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
123725023 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
123725047 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:123724997 original size:47 final size:47
Alignment explanation
Indices: 123724904--123725046 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
123724894 GAGGAAGTGA
123724904 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
123724952 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
123724999 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
123725047 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:123725020 original size:71 final size:72
Alignment explanation
Indices: 123724904--123725047 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
123724894 GAGGAAGTGA
*
123724904 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
123724967 CCAGTTAT
65 CCAGTTAT
** * *
123724975 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
123725040 CAGTTAT
66 CAGTTAT
123725047 A
1 A
123725048 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:123725280 original size:30 final size:31
Alignment explanation
Indices: 123725237--123725330 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
123725227 CGTTTACAGT
123725237 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
123725268 AAAGGC-TCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123725298 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
123725329 AA
1 AA
123725331 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 30 0.49
31 31 0.51
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:123728085 original size:27 final size:28
Alignment explanation
Indices: 123728055--123728155 Score: 111
Period size: 27 Copynumber: 3.7 Consensus size: 28
123728045 TTTAGTTTAC
123728055 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
123728082 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
123728109 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
123728136 TAAAATTACC-AAAGTACCCT
1 TAAAATTACCGAAA-TACCCT
123728156 CAATTTACAG
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.84
28 3 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:123728154 original size:54 final size:54
Alignment explanation
Indices: 123728055--123728161 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
123728045 TTTAGTTTAC
* * *
123728055 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
* * *
123728109 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTT
123728162 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTG
Found at i:123728172 original size:54 final size:53
Alignment explanation
Indices: 123728057--123728173 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 53
123728047 TAGTTTACTA
* * * **
123728057 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTAC
* *
123728110 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCTCAATTTAC
123728164 AGAATTACCG
1 A-AATTACCG
123728174 TTTTACCCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
53 11 0.21
54 40 0.75
55 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCTCAATTTAC
Found at i:123728443 original size:27 final size:27
Alignment explanation
Indices: 123728150--123728442 Score: 333
Period size: 27 Copynumber: 10.9 Consensus size: 27
123728140 ATTACCAAAG
* *
123728150 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
123728177 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
123728204 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
123728231 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123728258 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123728285 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123728312 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123728339 TACCCTCGATTTTCAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
123728366 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123728393 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123728420 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
123728443 AAAATACCCT
Statistics
Matches: 232, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 228 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:123728450 original size:27 final size:27
Alignment explanation
Indices: 123728312--123728640 Score: 114
Period size: 27 Copynumber: 12.1 Consensus size: 27
123728302 ATTACTGTTT
* * ***
123728312 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* **
123728339 TACCCTCGATTTTCAAAATTATCGT--TT
1 TACCCTCGATTTACAAAATTA-C-TAAAA
* * * ***
123728366 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
123728393 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
123728420 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
123728447 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123728474 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
123728501 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123728528 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
123728555 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
123728582 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
123728611 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
123728638 TAC
1 TAC
123728641 TTTTGTTTGT
Statistics
Matches: 243, Mismatches: 44, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.00
26 3 0.01
27 211 0.87
28 8 0.03
29 20 0.08
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:123728478 original size:54 final size:54
Alignment explanation
Indices: 123728420--123728559 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
123728410 ATTACTATTT
* ** * *
123728420 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
* * *
123728474 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
123728528 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
123728560 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
Found at i:123728582 original size:54 final size:52
Alignment explanation
Indices: 123728420--123728587 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 52
123728410 ATTACTATTT
* ** * * *
123728420 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTA-CAGAAA
* * * *
123728474 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTACAGAAA
*
123728528 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTT-CAAA-TTACAGAAA
123728582 TACCCT
1 TACCCT
123728588 TGACTTTCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 86 0.90
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTCAAATTACAGAAA
Found at i:123728760 original size:27 final size:26
Alignment explanation
Indices: 123728710--123728792 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
123728700 TAGGTAAAAA
123728710 GACCGTAAAGCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCTGTAGGGTAAAGT
*
123728736 GATCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
* * *
123728763 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
123728790 GAC
1 GAC
123728793 GAATATGCCC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 12 0.24
27 34 0.68
28 4 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:123730088 original size:20 final size:20
Alignment explanation
Indices: 123730028--123730088 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
123730018 ATAAATATGG
*
123730028 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
123730048 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123730068 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123730088 T
1 T
123730089 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:123730165 original size:24 final size:24
Alignment explanation
Indices: 123730138--123730280 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
123730128 GAGGAAGTGA
123730138 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123730162 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123730186 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
123730209 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
123730233 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
123730257 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
123730281 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:123730231 original size:47 final size:47
Alignment explanation
Indices: 123730138--123730280 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
123730128 GAGGAAGTGA
123730138 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
123730186 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
123730233 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
123730281 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:123730254 original size:71 final size:72
Alignment explanation
Indices: 123730138--123730281 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
123730128 GAGGAAGTGA
*
123730138 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
123730201 CCAGTTAT
65 CCAGTTAT
** * *
123730209 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
123730274 CAGTTAT
66 CAGTTAT
123730281 A
1 A
123730282 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:123730515 original size:30 final size:31
Alignment explanation
Indices: 123730472--123730565 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
123730462 CGTTTACAGT
123730472 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
123730503 AAAGGC-TCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123730533 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
123730564 AA
1 AA
123730566 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 30 0.49
31 31 0.51
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:123733317 original size:28 final size:27
Alignment explanation
Indices: 123733284--123733339 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
123733274 TTAGAATACT
*
123733284 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-CTAAAAATACT-GAAATACCC
*
123733312 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTCTAAAAATACTGAAATACCC
123733339 T
1 T
123733340 CGATTTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACTGAAATACCC
Found at i:123733323 original size:27 final size:27
Alignment explanation
Indices: 123733293--123733393 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 27
123733283 TTTAGTTTAC
123733293 TAAAATTATCGAAATACCCTTAG-TTTG
1 TAAAATTA-CGAAATACCCTTAGATTTG
* *
123733320 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTAC-GAAATACCCTTAGATTTG
* * *
123733347 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTA-CGAAATACCCTTAGATTTG
*
123733374 TAAAATTACCAAAGTACCCT
1 TAAAATTACGAAA-TACCCT
123733394 CAATTTACAG
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
26 9 0.15
27 48 0.79
28 4 0.07
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACGAAATACCCTTAGATTTG
Found at i:123733681 original size:27 final size:27
Alignment explanation
Indices: 123733388--123733680 Score: 342
Period size: 27 Copynumber: 10.9 Consensus size: 27
123733378 ATTACCAAAG
* *
123733388 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
123733415 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
*
123733442 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
123733469 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123733496 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123733523 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123733550 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123733577 TACCCTCGATTTTCAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* * *
123733604 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
123733631 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
123733658 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
123733681 AAAATACCCT
Statistics
Matches: 234, Mismatches: 26, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 230 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:123733688 original size:27 final size:27
Alignment explanation
Indices: 123733604--123733878 Score: 110
Period size: 27 Copynumber: 10.1 Consensus size: 27
123733594 ATTATCGTTT
* * * ***
123733604 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
123733631 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
123733658 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
123733685 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123733712 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* ** *** **
123733739 TACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
123733766 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
123733793 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
123733820 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
123733849 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
123733876 TAC
1 TAC
123733879 TTTTGTTTGT
Statistics
Matches: 200, Mismatches: 37, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
26 2 0.01
27 172 0.86
28 7 0.04
29 19 0.09
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:123733716 original size:54 final size:54
Alignment explanation
Indices: 123733658--123733797 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
123733648 ATTACTATTT
* ** * *
123733658 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
* * *
123733712 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
123733766 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
123733798 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
Found at i:123733820 original size:54 final size:52
Alignment explanation
Indices: 123733658--123733825 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 52
123733648 ATTACTATTT
* ** * * *
123733658 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTA-CAGAAA
* * * *
123733712 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGCTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTT-GATT-TCAAATTACAGAAA
*
123733766 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTT-CAAA-TTACAGAAA
123733820 TACCCT
1 TACCCT
123733826 TGACTTTCTA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 86 0.90
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTCAAATTACAGAAA
Found at i:123733969 original size:27 final size:27
Alignment explanation
Indices: 123733939--123734030 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
123733929 TACCCTATTA
*
123733939 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
123733966 GGTAAAGTGATCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
123733993 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
123734020 GGTAAAATGAC
1 GGTAAAATGAC
123734031 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:123735325 original size:20 final size:20
Alignment explanation
Indices: 123735265--123735325 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
123735255 ATAAATATGG
*
123735265 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
123735285 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123735305 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123735325 T
1 T
123735326 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:123735402 original size:24 final size:24
Alignment explanation
Indices: 123735375--123735516 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
123735365 GAGGAAGTGA
123735375 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
123735399 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123735423 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
123735446 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
123735469 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
123735493 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
123735517 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
22 9 0.08
23 24 0.22
24 63 0.59
25 11 0.10
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:123735490 original size:70 final size:72
Alignment explanation
Indices: 123735375--123735517 Score: 202
Period size: 70 Copynumber: 2.0 Consensus size: 72
123735365 GAGGAAGTGA
* *
123735375 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
123735438 CCAGTTAT
65 CCAGTTAT
** * *
123735446 AAAAGGGCTTATG-CCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
123735510 CAGTTAT
66 CAGTTAT
123735517 A
1 A
123735518 TGATAAAGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
70 39 0.61
71 25 0.39
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:123735793 original size:32 final size:31
Alignment explanation
Indices: 123735707--123735802 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
123735697 CGTTTACAGT
123735707 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123735738 AAAGGCATCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123735769 AAAGGCTTCGGCCACAGTATTATGAAATATGA
1 AAAGGCTTCGGCC-CAGTAATATGAAATATGA
123735801 AA
1 AA
123735803 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
31 42 0.69
32 19 0.31
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:123737494 original size:27 final size:27
Alignment explanation
Indices: 123737422--123737891 Score: 513
Period size: 27 Copynumber: 17.6 Consensus size: 27
123737412 AAAGTACTCC
*
123737422 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
123737449 C-ATTTACAGAATTACTTGTTTTACCCT
1 CGATTTACAGAATTAC-TGTTTTACCCT
*
123737476 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
123737503 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
123737530 C-AGTTTATCAGAATTACTATTTTACCCT
1 CGA-TTTA-CAGAATTACTGTTTTACCCT
123737558 CGATTTAC-GAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
123737584 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
123737611 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
123737638 CGATTTATAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
123737665 CGATTTATA-AATTACCGTTTT-CCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
123737690 CGATTTA-AGAATTACCG-TTTA-CCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
123737714 C-AGTTTACAGAATTAACTATTTTA-CCT
1 CGA-TTTACAGAATT-ACTGTTTTACCCT
* *
123737741 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
* * ** *
123737767 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACTGTTTTACCCT
*
123737795 CGATTTACATAATTA-TCG-TTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
* *
123737821 CGATTTAAAAGAATTAC-ATTTTACCCT
1 CGATTT-ACAGAATTACTGTTTTACCCT
*
123737848 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
123737875 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
123737892 AAAATACCCT
Statistics
Matches: 384, Mismatches: 35, Indels: 48
0.82 0.07 0.10
Matches are distributed among these distances:
23 1 0.00
24 12 0.03
25 26 0.07
26 82 0.21
27 223 0.58
28 39 0.10
29 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:123737916 original size:237 final size:242
Alignment explanation
Indices: 123737403--123737918 Score: 619
Period size: 237 Copynumber: 2.1 Consensus size: 242
123737393 CTCGACTTGT
* * ** *
123737403 AAAATTACCAAAGTACTCC-CGATTTACAGAATTACTATTTTACCCTCATTTACAGAATTACTTG
1 AAAATTACCAAAATAC-CCTCGATTTAGA-AATTACCGTTTTACCCTCATTTACAGAATTACTCG
* *
123737467 TTTTACCCTCAGTTTACAGAATTATTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
64 TTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCA
* * * *
123737532 GTTTATCAGAATTACTATTTTACCCTCGATTTACGAATTACTGTTTTACCCTCAGTTTACAGAAT
129 ATTTATCAGAATTACCATTTTACCCCCGATTTACGAATTACTGTTTTACCCTCAGTTTAAAGAAT
** *
123737597 TATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAT
194 TATCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAC
**** *
123737646 AAAATTACCGTTTTACCCTCGATTTATAAATTACCGTTTT-CCCTCGATTTA-AGAATTAC-CG-
1 AAAATTACCAAAATACCCTCGATTTAGAAATTACCGTTTTACCCTC-ATTTACAGAATTACTCGT
*
123737707 TTTA-CCTCAGTTTACAGAATTAACTATTTTA-CCTCGATTTATAGAATTACCGTTTTACCC-CT
65 TTTACCCTCAGTTTACAGAATT-ACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-
* *
123737769 AATTTA-CATAATTACCATTTTACCCCCGATTTACATAATTA-TCG-TTTACCCTC-GATTTAAA
128 AATTTATCAGAATTACCATTTTACCCCCGATTTAC-GAATTACT-GTTTTACCCTCAG-TTT-AA
123737830 AGAATTA-CATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAC
189 AGAATTATCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAC
* * *
123737883 AAAATTACTAAAATACCCTTGGTTGT-GAAATTACCG
1 AAAATTACCAAAATACCCTCGATT-TAGAAATTACCG
123737919 CAATACCCTC
Statistics
Matches: 236, Mismatches: 28, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
236 1 0.00
237 108 0.46
238 65 0.28
239 11 0.05
240 1 0.00
241 13 0.06
242 17 0.07
243 20 0.08
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (242 bp):
AAAATTACCAAAATACCCTCGATTTAGAAATTACCGTTTTACCCTCATTTACAGAATTACTCGTT
TTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAAT
TTATCAGAATTACCATTTTACCCCCGATTTACGAATTACTGTTTTACCCTCAGTTTAAAGAATTA
TCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAC
Found at i:123739272 original size:20 final size:20
Alignment explanation
Indices: 123739212--123739272 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
123739202 ATAAATATGG
*
123739212 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
123739232 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123739252 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123739272 T
1 T
123739273 GTATCATAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:123739352 original size:23 final size:23
Alignment explanation
Indices: 123739322--123739431 Score: 156
Period size: 23 Copynumber: 5.0 Consensus size: 23
123739312 AGGAAGTGAA
123739322 AAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATC
*
123739345 AAAGGGCTTATGCCCTAGTTATC
1 AAAGGGCTTATGCCCCAGTTATC
*
123739368 ATAGGGCTTATG-CCCAGTTAT-
1 AAAGGGCTTATGCCCCAGTTATC
*
123739389 -AAGGGCTT-TGCCCCAGTTATG
1 AAAGGGCTTATGCCCCAGTTATC
*
123739410 AAAGGGCTTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
123739432 TAAAAGAGGC
Statistics
Matches: 79, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
19 2 0.03
20 16 0.20
22 16 0.20
23 45 0.57
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATC
Found at i:123739451 original size:65 final size:65
Alignment explanation
Indices: 123739323--123739454 Score: 162
Period size: 65 Copynumber: 2.0 Consensus size: 65
123739313 GGAAGTGAAA
* * *
123739323 AAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCTAGTTATCATAGGGCTTATGCCCAGTTA
1 AAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAGGGC-TATGCCCAGTTA
123739388 T
65 T
* *
123739389 AAGGGCTT-TGCCCCAGTTATGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-A-GCCTCAGT
1 AAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTATGCC-CAGT
123739451 TAT
63 TAT
123739454 A
1 A
123739455 TGATAAAGCA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
64 3 0.05
65 40 0.69
66 12 0.21
67 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (65 bp):
AAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAGGGCTATGCCCAGTTAT
Found at i:123739680 original size:31 final size:31
Alignment explanation
Indices: 123739645--123739736 Score: 145
Period size: 29 Copynumber: 3.1 Consensus size: 31
123739635 CGTTTACAGT
123739645 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123739676 AAAGGCATCGGCCCAGTAA-ATGAAATATG-
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
123739705 AAAGGCTTCGG-CCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
123739735 AA
1 AA
123739737 TATGAAAGGG
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
28 6 0.11
29 20 0.36
30 12 0.21
31 18 0.32
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:123741618 original size:132 final size:134
Alignment explanation
Indices: 123741351--123741816 Score: 675
Period size: 132 Copynumber: 3.5 Consensus size: 134
123741341 AAAGTACTCC
*
123741351 CGATTTACAGAATTACCGTTTTACCCTC-GATTTATAGAATTACTGTTTTACCCTCGATTTACAA
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
**
123741415 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTAAAATTACTATTTT
66 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTAAAATTACCGTTTT
123741479 ACCCT
130 ACCCT
* * *
123741484 CGATTTACAGAATTA-CGTTTTACCCTCAG-TTTACAGAATTATTGTTTTA-CCTTGATTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
* *
123741546 AATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTTAAAATTACCGTTTT
66 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTAAAATTACCGTTTT
123741611 ACCCT
130 ACCCT
* * *
123741616 CGATTTACA-AATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCTCGATTTATAG
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
* * *
123741679 AATTACCGTTTTACCCT-AATTTACATAATTACCATTTTACCC-CGATTTACATAATTA-CGTTT
66 AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA-A-AATTACCGTTT
123741741 TACCCT
129 TACCCT
* *
123741747 CGATTTACAGAATTACTGTTTTACCCT-TGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
1 CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
123741811 AATTAC
66 AATTAC
123741817 TAAAATACCC
Statistics
Matches: 302, Mismatches: 23, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
130 4 0.01
131 84 0.28
132 171 0.57
133 43 0.14
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (134 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
AATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAAAATTACCGTTTTA
CCCT
Found at i:123741817 original size:27 final size:27
Alignment explanation
Indices: 123741351--123741816 Score: 616
Period size: 27 Copynumber: 17.6 Consensus size: 27
123741341 AAAGTACTCC
123741351 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
123741378 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
123741405 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
123741432 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
123741459 C-AGTTTA-A-AATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
123741484 CGATTTACAGAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
123741510 C-AGTTTACAGAATTATTGTTTTA-CCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
123741536 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
123741563 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
123741590 CGATTTTA-A-AATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
123741616 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
123741642 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
123741669 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
123741696 -AATTTACATAATTACCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
*
123741721 CGATTTACATAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
123741747 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
123741774 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
123741801 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
123741817 TAAAATACCC
Statistics
Matches: 391, Mismatches: 32, Indels: 32
0.86 0.07 0.07
Matches are distributed among these distances:
25 35 0.09
26 141 0.36
27 210 0.54
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:123741843 original size:54 final size:53
Alignment explanation
Indices: 123741352--123741829 Score: 269
Period size: 53 Copynumber: 9.0 Consensus size: 53
123741342 AAGTACTCCC
* * **** *
123741352 GATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
* * *****
123741406 GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCC-T
1 GATTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
* * * **
123741459 CAGTTTA-A-AATTACTATTTTACCCTCGATTTACAGAATTACGT--TTTACCC-T
1 GA-TTTACAGAATTAC-GTTTTACCCTCGATTTACAAAATTAC-TAAAATACCCTT
* * * * **** *
123741510 CAGTTTACAGAATTATTGTTTTA-CCTTGATTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
* * ***** *
123741564 GATTTATAGAATTACCGTTTTACCCTCGATTT-TAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
* *** *
123741617 GATTTACA-AATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTA-CGTTTTACCCTCGA-TTTACAAAATTACTAAAATACCCTT
* * * * *** *
123741670 GATTTATAGAATTACCGTTTTACCCT-AATTTACATAATTACCATTTTACCC-C
1 GATTTACAGAATTA-CGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
* * ****
123741722 GATTTACATAATTACGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
123741775 GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 GATTTACAGAATTAC-GTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
123741829 G
1 G
123741830 GTTTGTGAAA
Statistics
Matches: 367, Mismatches: 40, Indels: 34
0.83 0.09 0.08
Matches are distributed among these distances:
51 29 0.08
52 104 0.28
53 120 0.33
54 114 0.31
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (53 bp):
GATTTACAGAATTACGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
Found at i:123743078 original size:25 final size:25
Alignment explanation
Indices: 123743049--123743096 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
123743039 CCTTATAATG
* * *
123743049 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
123743074 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
123743097 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:123743177 original size:11 final size:11
Alignment explanation
Indices: 123743144--123743197 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
123743134 TATGGTATGT
123743144 ATGATATGCAC
1 ATGATATGCAC
*
123743155 ATGA-ATG--T
1 ATGATATGCAC
123743163 ATGATATGCAC
1 ATGATATGCAC
*
123743174 ATGATATG--T
1 ATGATATGCAC
123743183 ATGATATGCAC
1 ATGATATGCAC
123743194 ATGA
1 ATGA
123743198 GTAATCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:123743184 original size:20 final size:20
Alignment explanation
Indices: 123743139--123743197 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
123743129 ATAAATATGG
123743139 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123743159 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123743178 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
123743198 GTAATCATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:123743272 original size:24 final size:24
Alignment explanation
Indices: 123743245--123743387 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
123743235 TGGAGGAAGA
123743245 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123743269 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
123743293 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
123743316 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
123743340 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
123743364 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
123743388 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Done.