Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 403 of 770
Found at i:123743338 original size:47 final size:47
Alignment explanation
Indices: 123743245--123743387 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
123743235 TGGAGGAAGA
123743245 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
123743293 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
123743340 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
123743388 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:123743361 original size:71 final size:72
Alignment explanation
Indices: 123743245--123743388 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
123743235 TGGAGGAAGA
*
123743245 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
123743308 CCAGTTAT
65 CCAGTTAT
** * *
123743316 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
123743381 CAGTTAT
66 CAGTTAT
123743388 A
1 A
123743389 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:123744453 original size:133 final size:133
Alignment explanation
Indices: 123744215--123744480 Score: 505
Period size: 133 Copynumber: 2.0 Consensus size: 133
123744205 CTACCTGGTG
123744215 CCCAGCTTCCATACACTTTGTTAACTCAACAAAATATATGGTTTTAAAACACTAAAACGGAACGT
1 CCCAGCTTCCATACACTTTGTTAACTCAACAAAATATATGGTTTTAAAACACTAAAACGGAACGT
*
123744280 GGGTTTTCAACTCCAATGTGGCACGTCAGATTCGGCCATAACGTCTGGGCCGGGTTTGGGGTGTT
66 GGGTTTTCAACTCCAATGTGGCACGTCAGATTCGGCCATAACGTCTAGGCCGGGTTTGGGGTGTT
123744345 ACA
131 ACA
*
123744348 CCCAGCTTCTATACACTTTGTTAACTCAACAAAATATATGGTTTTAAAACACTAAAACGGAACGT
1 CCCAGCTTCCATACACTTTGTTAACTCAACAAAATATATGGTTTTAAAACACTAAAACGGAACGT
*
123744413 GGGTTTTCAACTCCAATGTGGCACGTCAGATTCGGCCATAACGTCTAGGCTGGGTTTGGGGTGTT
66 GGGTTTTCAACTCCAATGTGGCACGTCAGATTCGGCCATAACGTCTAGGCCGGGTTTGGGGTGTT
123744478 ACA
131 ACA
123744481 ACTTTTGCTA
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 130 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (133 bp):
CCCAGCTTCCATACACTTTGTTAACTCAACAAAATATATGGTTTTAAAACACTAAAACGGAACGT
GGGTTTTCAACTCCAATGTGGCACGTCAGATTCGGCCATAACGTCTAGGCCGGGTTTGGGGTGTT
ACA
Found at i:123745761 original size:535 final size:538
Alignment explanation
Indices: 123744478--123756241 Score: 22261
Period size: 535 Copynumber: 21.9 Consensus size: 538
123744468 TTGGGGTGTT
* *
123744478 ACAACTTTTGCTAAGTGATTTTCATTGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAT
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
*
123744543 TTTGTCATAAAAGTGTGATTTAGTGGAAATTATGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123744608 GGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
131 GGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123744673 AT-AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT-AAATTTAGTAATTAAATGTTT
195 ATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTT
123744736 AAATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
259 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
*
123744800 CCAT-ACTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123744864 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACC--TTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123744927 TGATGAAGGTTTA-GGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
454 TGATGAAGG-TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
123744991 TGCATGTTTATGGTTGGAGAA
518 TGCATGTTTATGGTTGGAGAA
123745012 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123745077 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123745141 GGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
131 GGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123745206 ATAAAATTTA-GGGC-AAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTA
195 ATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTA
123745269 AATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCCTTCGGCCGAAATTTTGAAGACCA
260 AATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTT-GGCCGAAATTTTGAAGACCA
123745333 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123745397 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123745462 TGATG-AGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
454 TGATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
123745526 TGCATGTTTATGGTTGGAGAA
518 TGCATGTTTATGGTTGGAGAA
123745547 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123745612 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123745677 GGCTTAA-TGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123745741 TAAAATTTA-GGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
123745804 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTCGGCCGAAATTTTGAAGACCAC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTT-GGCCGAAATTTTGAAGACCAC
123745869 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTAA
325 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
123745933 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
390 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
123745998 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
455 GATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123746063 GCATGTTTATGGTTAGGAGAA
519 GCATGTTTATGGTT-GGAGAA
123746084 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123746149 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
* *
123746214 GGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGGGCAAAAGTGTAAA-AT
131 GGCTTAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-GGGTAAAAGTGTAAATAT
123746278 GATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTT
194 GATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTT
*
123746343 TAAATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACC
258 TAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACC
123746408 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTT
323 ACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTT
123746473 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
388 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
123746538 ATGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
453 ATGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTA
123746603 TGCATGTTTATGGTTGGAGAA
518 TGCATGTTTATGGTTGGAGAA
123746624 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123746689 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123746753 GGCTTAAGTGAAAATAAATTGAATGAAAATTA-TTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123746817 TAAAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
*
123746881 ATAAACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
*
123746945 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-TGTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123747009 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123747074 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
456 ATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
123747139 CATGTTTATGGTTGGAGAA
520 CATGTTTATGGTTGGAGAA
123747158 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123747223 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123747288 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG-
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123747352 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
*
123747417 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
123747482 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123747547 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123747612 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
456 ATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
123747677 CATGTTTATGGTTGGAGAA
520 CATGTTTATGGTTGGAGAA
123747696 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123747761 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123747826 GGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGG-AAAAGTGTAAATATG
131 GGCTTAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123747890 ATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTT
195 ATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTT
123747955 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
259 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
123748020 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123748084 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123748149 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
454 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123748214 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123748234 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123748299 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123748363 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123748428 TAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTA
196 TAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTTA
123748493 AATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCAC
260 AATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCAC
123748558 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
325 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
123748623 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
390 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
123748688 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
455 GATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123748753 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123748773 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123748838 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123748902 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123748967 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATG--AAAA-TT--TAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
*
123749027 ATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
123749091 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123749156 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123749221 ATGAAGGTTAGGGTTTGAACCATGTTATAAATTT-TGTATTTTGATGTTTAATGGTAGATTATGC
456 ATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGC
123749285 ATGTTTATGGTTGGAGAA
521 ATGTTTATGGTTGGAGAA
123749303 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123749368 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123749432 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123749497 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
123749562 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCCTTCGGCCGAAATTTTGAAGACCAC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTT-GGCCGAAATTTTGAAGACCAC
123749626 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
325 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
*
123749691 TGATTTTTACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
390 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
123749756 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
455 GATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123749821 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123749841 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123749906 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123749971 GGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA-AAGCCTAGGG-AAAAGTGTAAA-ATG
131 GGCTTAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123750033 ATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTT
195 ATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTT
123750098 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
259 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
123750163 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123750228 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123750293 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
454 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123750358 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123750378 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123750443 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123750508 GGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
131 GGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123750573 ATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTT
195 ATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTT
123750638 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
259 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
*
123750703 CCATGGCTAGGGTTTTGTTTAAGCTTTCTAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123750768 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123750833 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTT-TGTATTTTGATGTTTAATGGTAGATTAT
454 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123750897 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123750917 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123750982 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123751046 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123751111 TAAAATTTA-GGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
123751174 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTCGGCCGAAATTTTGAAGACCAC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTT-GGCCGAAATTTTGAAGACCAC
123751239 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTAA
325 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
123751303 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
390 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
123751368 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
455 GATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123751433 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123751453 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123751518 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123751583 GGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA-AAGCCTAGGGCAAAAGTGTAAA-ATG
131 GGCTTAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123751646 ATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT-AAATTTAGTAATTAAATGTTT
195 ATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTT
123751710 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
259 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
123751775 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123751840 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123751905 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
454 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123751970 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123751990 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123752055 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123752119 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123752184 TAAAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
*
123752248 ATAAACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
123752312 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT--GTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123752375 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123752440 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
456 ATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
123752505 CATGTTTATGGTTGGAGAA
520 CATGTTTATGGTTGGAGAA
123752524 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAA-TT-TAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123752587 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123752652 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG-
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123752716 -AAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAT--AATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
*
123752778 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
123752843 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123752908 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123752973 ATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
456 ATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
123753038 CATGTTTATGGTTGGAGAA
520 CATGTTTATGGTTGGAGAA
123753057 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123753122 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
* *
123753187 GGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGGCAAAAGTGTAAA-ATG
131 GGCTTAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATG
123753251 ATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTT
195 ATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTT
123753316 AAATAAACAAAATAAAAG--AAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
259 AAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCA
123753379 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCT-CATAGTAAGT-CGTTCTTGCCCCGTTTTTA
324 CCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTA
123753442 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
389 ATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTA
123753507 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
454 TGATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123753572 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123753592 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123753657 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123753721 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123753786 TAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT-AAATTTAGTAATTAAATGTTTA
196 TAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGATAAAATTTAGTAATTAAATGTTTA
123753850 AATAAACAAAATAAAAG--AAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCAC
260 AATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCAC
123753913 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
325 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
123753978 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
390 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
123754043 GATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
455 GATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATG
123754108 CATGTTTATGGTTGGAGAA
520 CATGTTTATGGTTGGAGAA
123754127 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123754192 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123754256 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123754321 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
*
123754385 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
123754450 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123754514 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123754579 ATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGC
456 ATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGC
123754644 ATGTTTATGGTTGGAGAA
521 ATGTTTATGGTTGGAGAA
123754662 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123754727 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
123754792 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
123754857 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
123754922 ATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
123754986 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
326 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
123755051 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
391 GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
123755116 ATGAAGGTTAGGGTTTGAACCATGTTATAAATTT-TGTATTTTGATGTTTAATGGTAGATTATGC
456 ATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGC
123755180 ATGTTTATGGTTGGAGAA
521 ATGTTTATGGTTGGAGAA
123755198 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123755263 TTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
*
123755327 GGCTTAAATGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
131 GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
*
123755392 TAAAATTTA-GGGTAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAA
196 TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
123755455 ATAAACAAAATAAAAGCC-AATTTTGGTCATCTTCAA-CCCTTCGGCCGAAATTTTGAAGACCAC
261 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTT-GGCCGAAATTTTGAAGACCAC
123755518 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
325 CATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAA
123755583 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC-ACCATTTATTTGAGTTAT
390 TGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTAT
123755647 GATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
455 GATGAAGGT-TAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTAT
123755712 GCATGTTTATGGTTGGAGAA
519 GCATGTTTATGGTTGGAGAA
123755732 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
1 ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
123755797 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTC-GCTA
66 TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
* * *
123755861 GGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGGGCAAAAGAGTAAA-AT
131 GGCTTAA-GTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-GGGTAAAAGTGTAAATAT
*
123755925 GATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATTAAAA-TTAGTAGTTAAATGT
194 GATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGA-TAAAATTTAGTAATTAAATGT
** *
123755989 TTAAATAAACAAAATAAAAGAAAAATTTTGGTTATCTTCAACCCCTTGGCCGAAATTTTGAAGAC
257 TTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGAC
123756054 CACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTT
322 CACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTT
* *
123756119 TAATGATTTTTACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCAACCATTTATTTGAGT
387 TAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGT
123756184 TATGATGAAGGTTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAAT
452 TATGATGAAGG-TTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAAT
123756242 TGTAACGCCC
Statistics
Matches: 11079, Mismatches: 50, Indels: 196
0.98 0.00 0.02
Matches are distributed among these distances:
530 328 0.03
531 139 0.01
532 316 0.03
533 1182 0.11
534 1088 0.10
535 1888 0.17
536 1413 0.13
537 1434 0.13
538 1354 0.12
539 940 0.08
540 691 0.06
541 146 0.01
542 160 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (538 bp):
ACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA
TTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTA
GGCTTAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGA
TAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
GATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATG
ATGAAGGTTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGC
ATGTTTATGGTTGGAGAA
Found at i:123756580 original size:26 final size:26
Alignment explanation
Indices: 123756541--123756650 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
123756531 TGATACAAAT
123756541 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
123756567 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
123756593 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
123756619 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
123756645 TGATAA
1 TGATAA
123756651 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:123763838 original size:534 final size:538
Alignment explanation
Indices: 123761654--123771075 Score: 17367
Period size: 534 Copynumber: 17.7 Consensus size: 538
123761644 GGGTGCTACA
* *
123761654 TTAATAGTAGATTATGCATGTTTATGGTTGGAGAAACAAGTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
* *
123761719 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTTATAAAAGTGTGATTTTGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123761784 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
* *
123761849 TATCTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGACAAAAATTTAATTTTTT
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAA-TTAA-TTTTT
* * * *
123761914 CCATTGTACGATAAAATTTAGTAATTAAATGTTTAAAGAAACAAAATAAAAGCCAAATTTTGTTC
259 CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTC
* * *
123761979 CTCTTCATCCCCTCGGCCGAAATTTTGAAGACTACCATGGCTAGGGTTTTGTTTAAGCTTTCCAA
324 ATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAA
** * *
123762044 GCTCCATAGTAAGTATGTTCTTGCCCCATTTTTAATGATTTTCACGTTTTTGAAATCCTTATAAC
389 GCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
* *
123762109 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGTTAT
454 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
123762174 AAATTTG-GTATTTTGATGT
519 AAATTTGTGTATTTTGATGT
123762193 TTAATGGTAGATTATGCATG-TTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123762257 ATGCTAAAAAGGACTAATTTGT-AAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
123762321 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
*
123762386 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATGTG-T-AAATTTAGGGGCAAAAATGTAATTTTT
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAA-TTTT
123762449 TCCATAGTATGAT--AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
258 TCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
123762512 CATCTTCAACCCCTCGGCCGAAA-TTTGAAGA-CACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
323 CATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
123762575 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
388 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
123762640 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTA
453 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTA
123762705 T-AATTTGTGTATTTTGATGT
518 TAAATTTGTGTATTTTGATGT
123762725 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123762790 ATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTTCA-AAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123762853 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
* *
123762918 TATTTTACAAACCTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGC-AAAATTAATTTTTCC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
123762982 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
261 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
123763047 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-
326 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
123763111 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
391 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
123763176 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAA
456 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAA
123763240 ATTT-TGTATTTTGATGT
521 ATTTGTGTATTTTGATGT
123763257 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123763322 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123763387 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123763451 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
123763516 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-GTCAT
261 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
123763580 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
326 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
*
123763645 TCCATAGTAAGT-TGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
391 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
123763709 GATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACCATGTTATAA
456 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAA
123763773 ATTTGTGTATTTTGATGT
521 ATTTGTGTATTTTGATGT
123763791 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123763856 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
123763921 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
123763985 TTATTTTACAAGCCTAGGGTAAAAGTGT-AA-ATG-TAAAATTTAGGGGCAAAAATGTAATTTTT
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTT
123764047 CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTC
259 CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTC
123764112 ATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAA
324 ATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAA
123764177 GCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
389 GCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
123764242 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
454 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
123764307 AAATTTGTGTATTTTGATGT
519 AAATTTGTGTATTTTGATGT
123764327 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123764392 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
123764457 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
123764522 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATA-GATAAAATTTA-GGGC-AAAATTAATTTTTC
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTC
123764584 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
260 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
123764649 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAG
325 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
123764713 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
390 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
123764778 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
455 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
123764843 AATTTGTGTATTTTGATGT
520 AATTTGTGTATTTTGATGT
123764862 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123764927 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123764992 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123765056 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTTC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAA-TTTTTC
123765121 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
260 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
123765186 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
325 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
**
123765251 CTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
390 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
123765316 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATA
455 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
123765380 AATTT-TGTATTTTGATGT
520 AATTTGTGTATTTTGATGT
123765398 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123765463 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123765528 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123765592 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTA-GGGCAAAAATGTAATTTTTC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTTC
123765656 CATAGTATGA-AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
260 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
123765720 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
325 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
123765785 CTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
390 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
123765849 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
455 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
123765914 AATTTGTGTATTTTGATGT
520 AATTTGTGTATTTTGATGT
123765933 TTAATGGTAGATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123765997 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
*
123766062 TGTGGGTTTTTATAGTTATGAAAGTGGTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
123766126 TTATTTTA-AAGCCTAGGG-AAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTT
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTT
123766188 GCCATAGTATGAT-AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG--AAATTTTGGT
259 -CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
123766250 CATCTTCAA--CC-CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
323 CATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
123766312 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
388 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
123766377 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTA
453 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTA
123766441 TAAATTTGTGTATTTTGATGT
518 TAAATTTGTGTATTTTGATGT
123766462 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123766527 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123766592 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123766657 TA-TTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTTC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAA-TTTTTC
123766721 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-GTCA
260 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
123766785 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
325 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
123766850 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
390 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
123766915 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
455 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
123766980 AATTTGTGTATTTTGATGT
520 AATTTGTGTATTTTGATGT
123766999 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123767064 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
123767129 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
*
123767194 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATGTGAT-AAATTTAGGGGCAAAAATGTAATTTTT
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAA-TTTT
123767258 TCCATAGTATGAT-AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
258 TCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
123767322 CATCTTCAACCCCTCGGCCGAAA-TTTG-AG---ACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
323 CATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
123767382 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
388 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
123767447 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTA
453 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTA
123767512 TAAATTTGTGTATTTTGATGT
518 TAAATTTGTGTATTTTGATGT
123767533 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123767598 ATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTTGTCA-AAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
123767661 TGTGGGTTTTT-TAGTTATGAAAGTGGTTC-GCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
123767724 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATA-GATAAAATTTAGGGGCAAAAATTAATTTTTC
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTC
123767788 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAA-AAAATAAAAGCCAAATTTTGGTCA
260 CATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
123767852 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAG
325 TCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
123767916 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
390 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
123767981 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
455 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATA
123768046 AATTTGTGTATTTTGATGT
520 AATTTGTGTATTTTGATGT
123768065 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123768130 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123768195 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123768260 TATTTTACAAGCCTA-GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTG
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTT-
123768324 CCATAGTATGAT-AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTC
259 CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTC
*
123768388 ATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAA
324 ATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAA
123768453 GCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
389 GCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAAC
123768518 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
454 ATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT
123768583 AAATTTGTGTATTTTGATGT
519 AAATTTGTGTATTTTGATGT
123768603 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123768668 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123768733 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123768797 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
123768862 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-GTCAT
261 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
123768926 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
326 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
123768991 TCCATAGTAAGT--GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
391 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
123769054 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACCATGTTATAA
456 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAA
123769118 ATTT-TGTATTTTGATGT
521 ATTTGTGTATTTTGATGT
123769135 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123769200 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123769265 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAA-TGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
*
123769329 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGC-AAAATGAATTTTTCC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
123769393 ATAGTATGA-AAAATTTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTGGTCAT
261 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
123769456 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
326 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
123769521 TCCATAGTAAGT-CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
391 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
123769585 GATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACCATGTTATAA
456 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAA
123769649 ATTTGTGTATTTTGATGT
521 ATTTGTGTATTTTGATGT
123769667 TTAATGGTAGATTATGCATGTTTATGGTT-GAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123769731 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
* *
123769796 TGTGGGTTTTTATAGTTATGAAAGTGGTTC-TCTAGGCTTAAGGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
* *
123769860 TTATTTTAAAAGCCTAGGGCAAAAGTGTAAA-ATGATAAAATTTAGGGGCAAAAATGTAATTTTT
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTT
*
123769924 GCCATAGTATGATAAAATTTAGTAGTTAAATGTTTAAATAAACAAAATAAAAG--AAATTTTGGT
259 -CCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
*
123769987 CATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
323 CATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCA
123770052 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
388 AGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAA
123770117 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TA-GGTTTGAACCATGTTA
453 CATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTA
123770180 TAAATTTGTGTATTTTGATGT
518 TAAATTTGTGTATTTTGATGT
123770201 TTAAT-GTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123770265 ATGCTAAAAAGGACTAATTTGTAAAA-TTATAAAATTTTCATAAAA-TGTGATTTAGTGGAAATT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
123770328 GTGGG-TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
131 GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
123770392 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
196 TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
123770457 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
261 ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
123770522 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTT-C---C
326 CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
*
123770583 -CC------A----------------TTTTTAATGATTTTTACGTTTTTGAAATCCTTGTAACAT
391 TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
*
123770625 GATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACTATGTTATAA
456 GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAA
123770689 ATTTG-GTATTTTGATGT
521 ATTTGTGTATTTTGATGT
123770706 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAAC-TTTGCTAAGTGATTTTCAATGAAA
1 TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
123770770 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAAT
66 ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAAT
123770835 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
130 TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA
*
123770900 TTATTTTACAAG-CTAGGGTAAAAGTGTAAATGTG-T-AAATTTAGGGGCAAAAATGTAATTTTT
195 TTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAA-TTTT
** *
123770962 TCCATAGTATGATAAGTTTTAGTAATTAAATGTTTAAATAAACAAAATAAAAACCAAATTTTGGT
258 TCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGT
* * *
123771027 CATCTTCAACCCCTCGGCCGAAATTGTGTAGACGACCATGGCTAGGGTT
323 CATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTT
123771076 GTAACACCCC
Statistics
Matches: 8720, Mismatches: 59, Indels: 239
0.97 0.01 0.03
Matches are distributed among these distances:
504 4 0.00
505 144 0.02
506 86 0.01
507 12 0.00
508 156 0.02
509 70 0.01
521 1 0.00
527 2 0.00
528 63 0.01
529 251 0.03
530 508 0.06
531 503 0.06
532 1331 0.15
533 866 0.10
534 1461 0.17
535 822 0.09
536 938 0.11
537 541 0.06
538 854 0.10
539 107 0.01
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (538 bp):
TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAA
ATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATT
GTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAAT
TATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATTAATTTTTCC
ATAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCAT
CTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGC
TCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT
GATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAA
ATTTGTGTATTTTGATGT
Found at i:123772253 original size:28 final size:28
Alignment explanation
Indices: 123772207--123772275 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
123772197 TTTAAAACCC
*
123772207 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
123772234 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
123772262 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
123772276 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:123773926 original size:20 final size:20
Alignment explanation
Indices: 123773903--123773940 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
123773893 CACATCCAAA
*
123773903 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
123773923 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
123773941 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:123780251 original size:28 final size:28
Alignment explanation
Indices: 123780205--123780273 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
123780195 TTTAAAACCC
*
123780205 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
123780232 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
123780260 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
123780274 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:123781906 original size:20 final size:20
Alignment explanation
Indices: 123781883--123781920 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
123781873 CACATCCAAA
*
123781883 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
123781903 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
123781921 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:123793720 original size:44 final size:44
Alignment explanation
Indices: 123793657--123794105 Score: 720
Period size: 44 Copynumber: 10.2 Consensus size: 44
123793647 GGTAAATCCT
*
123793657 GCAGATTTTGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
123793701 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *** *
123793745 GCAAATTCAACGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * * *
123793789 GCAGATTTGGCGTCT-TGTATTGGCGGAGAGCAAATTGAATATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
123793832 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGGTA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
123793876 GCAGATTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
123793920 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCAAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
123793964 GCAGATTTGGAGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
123794008 GCAGATTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
123794052 GCAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
123794096 GCAGATTTGG
1 GCAGATTTGG
123794106 TGTTCCTGAG
Statistics
Matches: 373, Mismatches: 31, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
43 40 0.11
44 333 0.89
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:123797105 original size:131 final size:130
Alignment explanation
Indices: 123796883--123797189 Score: 330
Period size: 131 Copynumber: 2.3 Consensus size: 130
123796873 AGACGAGATC
* * *
123796883 CGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAA
1 CGATGTTTGGCAATTCG-GGAATCATGCCCTATCGTGTTGGGTTGCAATTTCGCGTTTGCTCAAA
* *** *
123796948 ATAATCGAATATCCCTTCAAAGTTTCACTCGTGTCTTCTCAAAATCCTTTAAAACGAAGGCAATA
65 ACAATCGAATATCCCTTCAAAGTTTCACTCACATCTTCT-AAAATCCTTCAAAACGAAGGCAATA
123797013 CT
129 CT
* * * ** * *
123797015 CGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAA
1 CGATGTTTGGCAATTCGGGAATCATGCCCTATCGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAA
* * * * * * **
123797080 CAATCGAATATTCCTT-TAGGTTTTCACTCACATTTTCTAAAATCCTTCAAAATGAAGGTAATGT
66 CAATCGAATATCCCTTCAAAG-TTTCACTCACATCTTCTAAAATCCTTCAAAACGAAGGCAATAC
123797144 T
130 T
* * *
123797145 CGATGTTTGGCGATTTGAGAATCGA-GCCCTATCGTGTTGGGTTGC
1 CGATGTTTGGCAATTCGGGAATC-ATGCCCTATCGTGTTGGGTTGC
123797190 GCTTTTCCAT
Statistics
Matches: 143, Mismatches: 30, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
130 60 0.42
131 69 0.48
132 14 0.10
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (130 bp):
CGATGTTTGGCAATTCGGGAATCATGCCCTATCGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAA
CAATCGAATATCCCTTCAAAGTTTCACTCACATCTTCTAAAATCCTTCAAAACGAAGGCAATACT
Found at i:123801337 original size:28 final size:29
Alignment explanation
Indices: 123801301--123801355 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
123801291 TAACTATTTG
*
123801301 AACTAATTAATAATATTATA-AAATATTA
1 AACTAATTAATAACATTATAGAAATATTA
*
123801329 AACTCATTAATAACATTATAGAAATAT
1 AACTAATTAATAACATTATAGAAATAT
123801356 AGAGACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (29 bp):
AACTAATTAATAACATTATAGAAATATTA
Found at i:123805329 original size:2 final size:2
Alignment explanation
Indices: 123805322--123805359 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
123805312 CTACTGATTA
123805322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123805360 CCAATCAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:123806454 original size:22 final size:22
Alignment explanation
Indices: 123806426--123806478 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
123806416 GCCACCGTGT
123806426 ACGGTGGTCAGCGCCGGAGCCG
1 ACGGTGGTCAGCGCCGGAGCCG
* *
123806448 ACGGTGGCCGGCGCCGGAGCCG
1 ACGGTGGTCAGCGCCGGAGCCG
123806470 ACGGTGGTC
1 ACGGTGGTC
123806479 CGGTGACAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.11, C:0.32, G:0.47, T:0.09
Consensus pattern (22 bp):
ACGGTGGTCAGCGCCGGAGCCG
Found at i:123807177 original size:24 final size:24
Alignment explanation
Indices: 123807130--123807197 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
123807120 TATACTTATG
*
123807130 TATTATATTATATATGAATTTTTT-T
1 TATTATATTATATAT--ATTTTTTAA
123807155 TA-TATATTATATATATGTGTTTTAA
1 TATTATATTATATATAT-T-TTTTAA
*
123807180 TATTATGTTATATATATT
1 TATTATATTATATATATT
123807198 ATATACATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 2 0.05
23 1 0.03
24 16 0.43
25 5 0.14
26 13 0.35
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (24 bp):
TATTATATTATATATATTTTTTAA
Found at i:123807300 original size:2 final size:2
Alignment explanation
Indices: 123807293--123807327 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
123807283 AATACTATGT
123807293 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
123807328 TTTAATACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:123808502 original size:34 final size:36
Alignment explanation
Indices: 123808462--123808528 Score: 95
Period size: 34 Copynumber: 1.9 Consensus size: 36
123808452 TACTGTGTAT
123808462 TATATGTATTATTATT-TTTATTA-T-ATGTATTACG
1 TATATGTATT-TTATTATTTATTATTCATGTATTACG
*
123808496 TATATGTATTTTTTTATTTATTATTCATGTATT
1 TATATGTATTTTATTATTTATTATTCATGTATT
123808529 TTATTATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 4 0.14
34 17 0.59
35 1 0.03
36 7 0.24
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (36 bp):
TATATGTATTTTATTATTTATTATTCATGTATTACG
Found at i:123808533 original size:16 final size:16
Alignment explanation
Indices: 123808512--123808543 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
123808502 TATTTTTTTA
*
123808512 TTTATTATTCATGTAT
1 TTTATTATACATGTAT
123808528 TTTATTATACATGTAT
1 TTTATTATACATGTAT
123808544 ATATCTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTATTATACATGTAT
Found at i:123809534 original size:26 final size:26
Alignment explanation
Indices: 123809505--123809614 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
123809495 TGATACAAAT
123809505 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
123809531 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
123809557 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
123809583 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
123809609 TGATAA
1 TGATAA
123809615 GAATTCATGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:123812716 original size:24 final size:24
Alignment explanation
Indices: 123812671--123812725 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
123812661 AAACATGGCA
* *
123812671 AAAATAAAAATGACAATGATAACG
1 AAAATAAAAACGACAATAATAACG
* * *
123812695 AAAATGAAAACGATAATAATAATG
1 AAAATAAAAACGACAATAATAACG
*
123812719 TAAATAA
1 AAAATAA
123812726 CAATAGTACG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (24 bp):
AAAATAAAAACGACAATAATAACG
Found at i:123813193 original size:12 final size:11
Alignment explanation
Indices: 123813172--123813204 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
123813162 TTAATAAGGC
123813172 TATATAACATA
1 TATATAACATA
123813183 TATATATACATA
1 TATATA-ACATA
123813195 TATAT-ACATA
1 TATATAACATA
123813205 ATGAAAATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 6 0.29
12 10 0.48
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (11 bp):
TATATAACATA
Found at i:123815268 original size:87 final size:87
Alignment explanation
Indices: 123815112--123815615 Score: 491
Period size: 87 Copynumber: 5.8 Consensus size: 87
123815102 CAGCCTATTA
* * * * *
123815112 CCCTACTACTTAGGGGGTTAAGGTCTGTGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAA
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAA
*
123815177 GCTCATTATCCTCGATCTGTTT
66 GCTCATTATCTTCGATCTGTTT
* * *
123815199 CCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAA
* *
123815264 GCTCATCACCTTCGATCTGTTT
66 GCTCATTATCTTCGATCTGTTT
* ** * * ** **
123815286 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTTCAATCTGCTT-CACTGCAACTTCAGGAAG-
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAA-TTT-AGCCTG-TTACCCTACTGCTT-AGGGGGT
* * * * * *
123815349 -ACAAGATC-TGTAATTTTCAACCTATTA
62 TA-AAGCTCAT-T-ATCTTCGATCTGTTT
* * * * * *
123815376 CCCTACTACTTAGGGGGTTAAGGTCTATGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAA
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAA
123815441 GCTCATTATCTTCGATCTGTTT
66 GCTCATTATCTTCGATCTGTTT
* * *
123815463 CCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAA
* *
123815528 GTTC-TTCATCTTCGATCTG-CT
66 GCTCATT-ATCTTCGATCTGTTT
* * * * * *
123815549 CCACTACTGTTTAGGGAGATAAGATCTG-CAATTTGGCTTGTCACCCTACTGCTTAGGGGGTTAA
1 CC-CTACTGCTTAGGGGGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAA
123815613 AGC
65 AGC
123815616 CTTCAACCTG
Statistics
Matches: 334, Mismatches: 70, Indels: 27
0.77 0.16 0.06
Matches are distributed among these distances:
86 37 0.11
87 215 0.64
88 21 0.06
89 20 0.06
90 41 0.12
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.35
Consensus pattern (87 bp):
CCCTACTGCTTAGGGGGATAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAA
GCTCATTATCTTCGATCTGTTT
Found at i:123815307 original size:44 final size:44
Alignment explanation
Indices: 123815150--123815307 Score: 151
Period size: 44 Copynumber: 3.6 Consensus size: 44
123815140 GAATTTAGCT
* *
123815150 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCC-TCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCA-TAACCTTCGATC
* * * * * ** * *
123815194 TGTTTCCCTACTGCTTAGGGTGATAA-GATCTGTAAATTTAG-CC
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTC-ATAACCTTCGATC
* *
123815237 TGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCATAACCTTCGATC
*
123815281 TGTTTCCCTACTGCTTAGGGGGTTAAG
1 TGTTACCCTACTGCTTAGGGGGTTAAG
123815308 ATCTGTAAAT
Statistics
Matches: 87, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
43 33 0.38
44 54 0.62
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGGTTAAGGCTCATAACCTTCGATC
Found at i:123815525 original size:264 final size:264
Alignment explanation
Indices: 123815055--123815576 Score: 886
Period size: 264 Copynumber: 2.0 Consensus size: 264
123815045 GACATGTGAC
*
123815055 TTCAATCTACTCCACTGAAACTTCAAGGAGACAAAATCTGTAATTTTCAGCCTATTACCCTACTA
1 TTCAATCTACTCCACTGAAACTTCAAGGAGACAAAATCTGTAATTTTCAACCTATTACCCTACTA
*
123815120 CTTAGGGGGTTAAGGTCTGTGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTA
66 CTTAGGGGGTTAAGGTCTATGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTA
123815185 TCCTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTG
131 TCCTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTG
* * *
123815250 CTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGT
196 CTTAGGGGTTTAAGGCTCATCACCTTCGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTGT
123815314 AAATT
260 AAATT
* * * *
123815319 TTCAATCTGCTTCACTGCAACTTC-AGGAAGACAAGATCTGTAATTTTCAACCTATTACCCTACT
1 TTCAATCTACTCCACTGAAACTTCAAGG-AGACAAAATCTGTAATTTTCAACCTATTACCCTACT
123815383 ACTTAGGGGGTTAAGGTCTATGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATT
65 ACTTAGGGGGTTAAGGTCTATGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATT
*
123815448 ATCTTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACT
130 ATCCTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACT
* * * *
123815513 GCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTG
195 GCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
123815577 CAATTTGGCT
Statistics
Matches: 242, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
263 6 0.02
264 236 0.98
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (264 bp):
TTCAATCTACTCCACTGAAACTTCAAGGAGACAAAATCTGTAATTTTCAACCTATTACCCTACTA
CTTAGGGGGTTAAGGTCTATGAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTA
TCCTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTACTG
CTTAGGGGTTTAAGGCTCATCACCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
AATT
Found at i:123815928 original size:177 final size:177
Alignment explanation
Indices: 123815617--123816014 Score: 708
Period size: 177 Copynumber: 2.2 Consensus size: 177
123815607 GGTTAAAGCC
* *
123815617 TTCAACCTGTTACCCTA-TTGCTTAGGGGTTTAAGGTCTGTAAATTTAGTCTGCTCCACTGTGAC
1 TTCAACCTATTACCCTACTT-CTTAGGGGGTTAAGGTCTGTAAATTTAGTCTGCTCCACTGTGAC
* *
123815681 TTCAAGGAGACGAGACTTGCAACTTTGATCTGCTTCGCTGAGACTTCAGGAAGACAGGATTCGTT
65 TTCAAGGAGACGAGACTTGCAACTTTGATCTGCTTCGCTGAGACTTCAAGAAGACAGGATTCGCT
* *
123815746 GGATTTGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTATAATT
130 GGATTTAATCTGTTCCACTACAACTTCAGGGAGACAAGATCTATAATT
* *
123815794 TTCAGCCTATTACCCTACTTCTTAGGGGGTTAAGGTCTGTAAATTTAGTCTGCTCTACTGTGACT
1 TTCAACCTATTACCCTACTTCTTAGGGGGTTAAGGTCTGTAAATTTAGTCTGCTCCACTGTGACT
123815859 TCAAGGAGACGAGACTTGCAACTTTGATCTGCTTCGCTGAGACTTCAAGAAGACAGGATTCGCTG
66 TCAAGGAGACGAGACTTGCAACTTTGATCTGCTTCGCTGAGACTTCAAGAAGACAGGATTCGCTG
123815924 GATTTAATCTGTTCCACTACAACTTCAGGGAGACAAGATCTATAATT
131 GATTTAATCTGTTCCACTACAACTTCAGGGAGACAAGATCTATAATT
123815971 TTCAACCTATTACCCTACTTCTTAGGGGGTTAAGGTCTGTAAAT
1 TTCAACCTATTACCCTACTTCTTAGGGGGTTAAGGTCTGTAAAT
123816015 CTGGCTTGTT
Statistics
Matches: 211, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
177 209 0.99
178 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (177 bp):
TTCAACCTATTACCCTACTTCTTAGGGGGTTAAGGTCTGTAAATTTAGTCTGCTCCACTGTGACT
TCAAGGAGACGAGACTTGCAACTTTGATCTGCTTCGCTGAGACTTCAAGAAGACAGGATTCGCTG
GATTTAATCTGTTCCACTACAACTTCAGGGAGACAAGATCTATAATT
Found at i:123828340 original size:12 final size:11
Alignment explanation
Indices: 123828319--123828351 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
123828309 TTAATAAGGC
123828319 TATATAACATA
1 TATATAACATA
123828330 TATATATACATA
1 TATATA-ACATA
123828342 TATAT-ACATA
1 TATATAACATA
123828352 ATGAAAATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 6 0.29
12 10 0.48
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (11 bp):
TATATAACATA
Found at i:123829835 original size:34 final size:31
Alignment explanation
Indices: 123829766--123829837 Score: 144
Period size: 31 Copynumber: 2.3 Consensus size: 31
123829756 TAGGAAAATG
123829766 GGTGGTGGAGCAGAGGCCACTTGCAGGCGTC
1 GGTGGTGGAGCAGAGGCCACTTGCAGGCGTC
123829797 GGTGGTGGAGCAGAGGCCACTTGCAGGCGTC
1 GGTGGTGGAGCAGAGGCCACTTGCAGGCGTC
123829828 GGTGGTGGAG
1 GGTGGTGGAG
123829838 GGGTGGGGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.15, C:0.19, G:0.49, T:0.17
Consensus pattern (31 bp):
GGTGGTGGAGCAGAGGCCACTTGCAGGCGTC
Found at i:123832991 original size:15 final size:16
Alignment explanation
Indices: 123832964--123832994 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
123832954 ATTTTATTTT
123832964 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
123832980 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
123832995 TATTCTTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:123835338 original size:23 final size:23
Alignment explanation
Indices: 123835294--123835339 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
123835284 GTTCCATGCT
*
123835294 AATTTATTTTATAAATTCTTTTA
1 AATTTATTATATAAATTCTTTTA
*
123835317 AATTTATCTATATATATT-TTTTA
1 AATTTAT-TATATAAATTCTTTTA
123835340 TGTATATGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
AATTTATTATATAAATTCTTTTA
Found at i:123841312 original size:13 final size:14
Alignment explanation
Indices: 123841286--123841318 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
123841276 ATTTTCTCCA
123841286 TTCTTTTTCTTTCT
1 TTCTTTTTCTTTCT
123841300 TTCTTTTTC-TTCT
1 TTCTTTTTCTTTCT
123841313 TTCTTT
1 TTCTTT
123841319 CCCCTGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTCTTTTTCTTTCT
Found at i:123841545 original size:5 final size:5
Alignment explanation
Indices: 123841535--123841564 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
123841525 TCTTTAATTG
123841535 TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA
123841565 ATATTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:123843743 original size:19 final size:19
Alignment explanation
Indices: 123843719--123843758 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
123843709 GTGATTATCT
123843719 TAATATTAAATAAATTTAA
1 TAATATTAAATAAATTTAA
** *
123843738 TAATATTCTATTAATTTAA
1 TAATATTAAATAAATTTAA
123843757 TA
1 TA
123843759 TTAAAATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATATTAAATAAATTTAA
Found at i:123844621 original size:2 final size:2
Alignment explanation
Indices: 123844614--123844640 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
123844604 CTGCAAAACA
123844614 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
123844641 ATTAGTACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:123845350 original size:29 final size:30
Alignment explanation
Indices: 123845289--123845362 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
123845279 TCTATAAAAA
* *
123845289 TAGTCACTTTTGTTTGCCCAATGTTACATTT
1 TAGTCACTTATGTTTG-CAAATGTTACATTT
*
123845320 TAGTCACTTATGTTTG-AAATGTTACGTTT
1 TAGTCACTTATGTTTGCAAATGTTACATTT
123845349 TAGTCACTTATGTT
1 TAGTCACTTATGTT
123845363 ATTATTTTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 25 0.62
31 15 0.38
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.49
Consensus pattern (30 bp):
TAGTCACTTATGTTTGCAAATGTTACATTT
Found at i:123846248 original size:17 final size:17
Alignment explanation
Indices: 123846228--123846261 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
123846218 AGGTTTAGGT
123846228 TTAAAATTTTTAATTAA
1 TTAAAATTTTTAATTAA
**
123846245 TTAATTTTTTTAATTAA
1 TTAAAATTTTTAATTAA
123846262 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAAAATTTTTAATTAA
Found at i:123858381 original size:29 final size:29
Alignment explanation
Indices: 123858339--123858438 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
123858329 GACGAGATTA
123858339 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
123858368 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
123858397 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
123858426 GCACTAAGTGTGC
1 GCACTAAGTGTGC
123858439 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:123858454 original size:29 final size:30
Alignment explanation
Indices: 123858339--123858498 Score: 188
Period size: 29 Copynumber: 5.5 Consensus size: 30
123858329 GACGAGATTA
123858339 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
123858368 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
123858397 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
* ***
123858426 GCACTAAGTGTGCGA-GCTCGAAGGGTATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
* * * **
123858455 GCACTATGTGTGCG-GGCT-TAAATCGCATG
1 GCACTAAGTGTGCGATGCTGGAAAT-ATATG
123858484 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
123858499 AATCGAGTAT
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
28 2 0.02
29 114 0.97
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (30 bp):
GCACTAAGTGTGCGATGCTGGAAATATATG
Found at i:123866265 original size:40 final size:37
Alignment explanation
Indices: 123866149--123866286 Score: 123
Period size: 40 Copynumber: 3.5 Consensus size: 37
123866139 TATCCGGGCC
123866149 AAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTT
1 AAGTCCCGAAGGCTTTT-TGC-AAGT-ACTAAA-CCGGGTT
* ** *
123866190 AATTCCCGAAGGCATTTTTGCGATTTACCAAAACCGGGTT
1 AAGTCCCGAAGGC-TTTTTGC-AAGTA-CTAAACCGGGTT
* *
123866230 AAGTCCCGAAGGCATTTTTGCAAGCTATTATAACCGGGCT
1 AAGTCCCGAAGGC-TTTTTGCAAG-TACTA-AACCGGGTT
*
123866270 ATGTCCCGAAGGCTTTT
1 AAGTCCCGAAGGCTTTT
123866287 GAGCGAGTCG
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
39 6 0.07
40 50 0.62
41 21 0.26
42 4 0.05
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (37 bp):
AAGTCCCGAAGGCTTTTTGCAAGTACTAAACCGGGTT
Found at i:123872123 original size:212 final size:212
Alignment explanation
Indices: 123871756--123872178 Score: 747
Period size: 212 Copynumber: 2.0 Consensus size: 212
123871746 GTCGAGCTTA
123871756 AACTATAAATAAGCGCTTCTCGGGAGGCAACCCAAGCACTAACTGTGTTAACTTCTTTAAAATTT
1 AACTATAAATAAGCGCTTCTCGGGAGGCAACCCAAGCACTAACTGTGTTAACTTCTTTAAAATTT
* *
123871821 AGCCTTCAACACCTAACTTACTAACGGAGCTCTTAAATATAGGTTTTCCACAGAGACACTGCCAA
66 AGCCTTCAACACCTAACTTACTAACGGAGCTCTTAAATATAGGTTTTCCACAAAGACACGGCCAA
123871886 GCACACAGGCGTGCTTAGGGTCGTGTGAAACAGGGCAACATTTCTCCCAAACACAGGCTACGATA
131 GCACACAGGCGTGCTTAGGGTCGTGTGAAACAGGGCAACATTTCTCCCAAACACAGGCTACGATA
* *
123871951 AATTGCCATGGCCGTGC
196 AAATGCCAAGGCCGTGC
* **
123871968 AACTATAAATAAGCGCTTCTTGGGAGGCAACCTGAGCACTAACTGTGTTAACTTCTTTAAAATTT
1 AACTATAAATAAGCGCTTCTCGGGAGGCAACCCAAGCACTAACTGTGTTAACTTCTTTAAAATTT
* *
123872033 AGTCTTCAACACCTAACTTACTAACGGAGCTCTTAAATATAGTTTTTCCACAAAGACACGGCCAA
66 AGCCTTCAACACCTAACTTACTAACGGAGCTCTTAAATATAGGTTTTCCACAAAGACACGGCCAA
* *
123872098 GCACACGGGCGTGCTTAGGGTCGTGTTAAACAGGGCAACATTTCTCCCAAACACAGGCTACGATA
131 GCACACAGGCGTGCTTAGGGTCGTGTGAAACAGGGCAACATTTCTCCCAAACACAGGCTACGATA
123872163 AAATGCCAAGGCCGTG
196 AAATGCCAAGGCCGTG
123872179 GTCTAGCCTG
Statistics
Matches: 200, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
212 200 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (212 bp):
AACTATAAATAAGCGCTTCTCGGGAGGCAACCCAAGCACTAACTGTGTTAACTTCTTTAAAATTT
AGCCTTCAACACCTAACTTACTAACGGAGCTCTTAAATATAGGTTTTCCACAAAGACACGGCCAA
GCACACAGGCGTGCTTAGGGTCGTGTGAAACAGGGCAACATTTCTCCCAAACACAGGCTACGATA
AAATGCCAAGGCCGTGC
Found at i:123883252 original size:93 final size:93
Alignment explanation
Indices: 123883145--123883315 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
123883135 GCCCCTAAGT
* *
123883145 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
123883210 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
123883238 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
123883303 CGAGTTCGGATGC
66 CGAGTTCGGATGC
123883316 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:123883312 original size:46 final size:46
Alignment explanation
Indices: 123883140--123883312 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
123883130 AACCCGCCCC
* * *
123883140 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
123883186 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
123883234 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
123883279 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
123883313 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:123883766 original size:30 final size:30
Alignment explanation
Indices: 123883732--123883791 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
123883722 ATTTAATACG
123883732 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
123883762 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
123883792 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:123890799 original size:93 final size:93
Alignment explanation
Indices: 123890692--123890862 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
123890682 GCCCCTAAGT
* *
123890692 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
123890757 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
123890785 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
123890850 CGAGTTCGGATGC
66 CGAGTTCGGATGC
123890863 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:123890859 original size:46 final size:46
Alignment explanation
Indices: 123890687--123890859 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
123890677 AACCCGCCCC
* * *
123890687 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
123890733 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
123890781 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
123890826 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
123890860 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:123891316 original size:30 final size:30
Alignment explanation
Indices: 123891282--123891341 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
123891272 ATTTAATACG
123891282 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
123891312 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
123891342 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:123895195 original size:18 final size:18
Alignment explanation
Indices: 123895172--123895216 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
123895162 CCCATGGCAG
*
123895172 TAACAGTAATTAGTGCAA
1 TAACAGTAATCAGTGCAA
*
123895190 TAACAGTAATCAGTGCAG
1 TAACAGTAATCAGTGCAA
123895208 TAACAGTAA
1 TAACAGTAA
123895217 CAACAGTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.24
Consensus pattern (18 bp):
TAACAGTAATCAGTGCAA
Found at i:123895580 original size:27 final size:27
Alignment explanation
Indices: 123895550--123895753 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
123895540 TACATCACAA
* * **
123895550 AAGGGCAAAACAGTCATCTTACCATAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
* *
123895577 AAGGGCAAAATAGTCATCTTACCACAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
* *
123895604 CA-GGCAAAATAGTCATTTTACCACAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
*
123895630 AAGGGCAAAATAGTCATTTTACCCTAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
* *
123895657 AAGGGCAAAACAATCA-TTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
** *
123895683 AAGGGGTAAATAGTCATTTTACCCTAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
*
123895710 AAGGGCAAAACAGTCATTTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
*
123895737 AAGGGAAAAATAGTCAT
1 AAGGGCAAAATAGTCAT
123895754 ATTATCGATT
Statistics
Matches: 154, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 45 0.29
27 109 0.71
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (27 bp):
AAGGGCAAAATAGTCATTTTACCCCAT
Found at i:123895611 original size:53 final size:54
Alignment explanation
Indices: 123895550--123895753 Score: 279
Period size: 53 Copynumber: 3.8 Consensus size: 54
123895540 TACATCACAA
* * *
123895550 AAGGGCAAAACAGTCATCTTACCATATAAGGGCAAAATAGTCATCTTACCAC-AT
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACC-CTAT
* *
123895604 CA-GGCAAAATAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCCTAT
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCCTAT
* * **
123895657 AAGGGCAAAACAATCA-TTTACCCCATAAGGGGTAAATAGTCATTTTACCCTAT
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCCTAT
* *
123895710 AAGGGCAAAACAGTCATTTTACCCCATAAGGGAAAAATAGTCAT
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCAT
123895754 ATTATCGATT
Statistics
Matches: 133, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
52 1 0.01
53 95 0.71
54 37 0.28
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (54 bp):
AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCCTAT
Found at i:123895645 original size:80 final size:80
Alignment explanation
Indices: 123895545--123895753 Score: 278
Period size: 80 Copynumber: 2.6 Consensus size: 80
123895535 AAACATACAT
* * * *
123895545 CACAAAAGGGCAAAACAGTCATCTTACCATATAAGGGCAAAATAGTCATCTTACCACATCA-GGC
1 CACATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCAT-TTACCACATAAGGGC
123895609 AAAATAGTCATTTTAC
65 AAAATAGTCATTTTAC
* * * * **
123895625 CACATAAGGGCAAAATAGTCATTTTACCCTATAAGGGCAAAACAATCATTTACCCCATAAGGGGT
1 CACATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCATTTACCACATAAGGGCA
123895690 AAATAGTCATTTTAC
66 AAATAGTCATTTTAC
* *
123895705 C-CTATAAGGGCAAAACAGTCATTTTACCCCATAAGGGAAAAATAGTCAT
1 CAC-ATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCAT
123895754 ATTATCGATT
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
79 10 0.09
80 102 0.91
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (80 bp):
CACATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCATTTACCACATAAGGGCA
AAATAGTCATTTTAC
Found at i:123899143 original size:16 final size:17
Alignment explanation
Indices: 123899112--123899144 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
123899102 AAATTTTTAA
123899112 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
123899130 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
123899145 CTATGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:123899327 original size:5 final size:5
Alignment explanation
Indices: 123899317--123899424 Score: 74
Period size: 5 Copynumber: 19.8 Consensus size: 5
123899307 CATAAATAAA
*
123899317 AATAT AATAT -ATACT ATTAAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATA-T AAT-AT AATAT AATAT AATAT AATAT AATAT AATAT
* * * *
123899368 AACTATT ACTAA AATATT AATAC ATATAT AACTATT ATTAT AATAT AGATTAT
1 AA-TA-T AATAT AATA-T AATAT A-ATAT AA-TA-T AATAT AATAT A-A-TAT
123899421 AATA
1 AATA
123899425 AAAGACATAG
Statistics
Matches: 82, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
4 3 0.04
5 48 0.59
6 22 0.27
7 9 0.11
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.41
Consensus pattern (5 bp):
AATAT
Found at i:123899356 original size:15 final size:15
Alignment explanation
Indices: 123899317--123899424 Score: 74
Period size: 17 Copynumber: 6.6 Consensus size: 15
123899307 CATAAATAAA
123899317 AATATAATAT-ATACT
1 AATATAATATAATA-T
*
123899332 ATTAATAATATAATAT
1 AAT-ATAATATAATAT
123899348 AATATAATATAATAT
1 AATATAATATAATAT
* *
123899363 AATATAACTATTACTAA
1 AATATAA-TA-TAATAT
*
123899380 AATATTAATACATATAT
1 AATA-TAATATA-ATAT
*
123899397 AACTATTATTATAATAT
1 AA-TA-TAATATAATAT
123899414 AGATTATAATA
1 A-A-TATAATA
123899425 AAAGACATAG
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
15 21 0.28
16 13 0.18
17 26 0.35
18 14 0.19
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.41
Consensus pattern (15 bp):
AATATAATATAATAT
Found at i:123899828 original size:226 final size:226
Alignment explanation
Indices: 123899560--123899973 Score: 607
Period size: 226 Copynumber: 1.8 Consensus size: 226
123899550 AAACTACAGA
* * *
123899560 GACTTCAAGCATATTTCACCTAGTACAATAATAAATAATAATATATAACAATAAGCAATATATAA
1 GACTTAAAGCATATTTCAACTAGTACAATAATAAACAATAATATATAACAATAAGCAATATATAA
* * * * *
123899625 TGTACTACTATTATATATAACTATTATTGTAATAT-AGATTGTAATAAAAGATTTAGTATTATAT
66 TGTACTACTATTATATATAACTATTATTATAATATCA-ATTATAATAAAAGATATAATATTACAT
* * * *
123899689 GATATTATAATTTTTAATTATTTATGCAT-ATATAAACTATTAATATATGATATGATATAGCAAA
130 AATATTATAATGTTTAATCATTAATGCATAATATAAACTATTAATATATGATAT-ATATAGCAAA
123899753 AGAGCTAATTTTCAAATGTACGAAAAGTATAAG
194 AGAGCTAATTTTCAAATGTACGAAAAGTATAAG
* * * *
123899786 GACTTAAAGCATATTTCAACTAGTATAATAATAAACAATAATATATAATAATATGTAATATATAA
1 GACTTAAAGCATATTTCAACTAGTACAATAATAAACAATAATATATAACAATAAGCAATATATAA
* *
123899851 TGTACTACTATTATATATAACTATTATTATATTATCAATTATAATAAAATATATAATATTACATA
66 TGTACTACTATTATATATAACTATTATTATAATATCAATTATAATAAAAGATATAATATTACATA
* *
123899916 ATATTATAATGTTTAATCATTAATGCATAAATATAAGCTATTAATATATTATATATAT
131 ATATTATAATGTTTAATCATTAATGCAT-AATATAAACTATTAATATATGATATATAT
123899974 GATATGATAT
Statistics
Matches: 165, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
226 138 0.84
227 5 0.03
228 22 0.13
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (226 bp):
GACTTAAAGCATATTTCAACTAGTACAATAATAAACAATAATATATAACAATAAGCAATATATAA
TGTACTACTATTATATATAACTATTATTATAATATCAATTATAATAAAAGATATAATATTACATA
ATATTATAATGTTTAATCATTAATGCATAATATAAACTATTAATATATGATATATATAGCAAAAG
AGCTAATTTTCAAATGTACGAAAAGTATAAG
Found at i:123905282 original size:40 final size:39
Alignment explanation
Indices: 123905117--123905300 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
123905107 AAATTGAATG
* * *
123905117 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
123905157 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
123905197 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
123905237 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
123905276 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
123905301 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:123905325 original size:80 final size:81
Alignment explanation
Indices: 123905157--123905345 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
123905147 GCTGGAAATT
* * * *
123905157 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
123905222 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
123905238 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
123905301 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
123905317 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
123905346 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:123913389 original size:40 final size:40
Alignment explanation
Indices: 123913226--123913407 Score: 144
Period size: 40 Copynumber: 4.7 Consensus size: 40
123913216 AGAAATTGAA
* *
123913226 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCG
* * * *
123913266 T-ATAACCGGGTTAAGACCCGAAGGCAATTGTGC---TAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
* * * * *
123913302 TGCTATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
**
123913342 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
* * *
123913382 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
123913408 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
34 1 0.01
36 1 0.01
37 29 0.26
38 2 0.02
39 14 0.12
40 66 0.58
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
Found at i:123913435 original size:80 final size:78
Alignment explanation
Indices: 123913267--123913435 Score: 180
Period size: 80 Copynumber: 2.2 Consensus size: 78
123913257 GCTGGAAATT
* *
123913267 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCTATCCGGGCTAAGACCCGAAGGCATTC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATATCCGGGCTAAGACCCGAAGGCATTC
*
123913332 GTGCGAGTCATTC
66 GTGCGAGTCATCC
* * * * * * *
123913345 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGTTAAGTCCCGTAGGCC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGC---TAGTGATATCCGGGCTAAGACCCGAAGGCA
* * *
123913409 TTGGTGCGGGTTA-CC
63 TTCGTGCGAGTCATCC
123913424 ATAACCGGGCTA
1 ATAACCGGGCTA
123913436 TGTCCGAAGG
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
77 28 0.38
79 1 0.01
80 44 0.60
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (78 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATATCCGGGCTAAGACCCGAAGGCATTC
GTGCGAGTCATCC
Found at i:123923312 original size:40 final size:39
Alignment explanation
Indices: 123923147--123923330 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
123923137 AAATTGAATG
* * *
123923147 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
123923187 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
123923227 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
123923267 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
123923306 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
123923331 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:123923355 original size:80 final size:81
Alignment explanation
Indices: 123923187--123923375 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
123923177 GCTGGAAATT
* * * *
123923187 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
123923252 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
123923268 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
123923331 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
123923347 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
123923376 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:123934760 original size:49 final size:49
Alignment explanation
Indices: 123934639--123935193 Score: 729
Period size: 47 Copynumber: 11.3 Consensus size: 49
123934629 ATGTATGAGA
* * *
123934639 TATATATATGTGATAAGGCCGAATGGCCAATGTAATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
123934688 --CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
123934735 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
123934782 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
123934831 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGGGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
123934878 --CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
123934925 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
123934974 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
123935023 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
123935072 TATATATATGTGATAAGTATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 --TATATA--T-AT--G----TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
123935132 --TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
123935179 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
123935194 TCCCGAAGGG
Statistics
Matches: 462, Mismatches: 25, Indels: 40
0.88 0.05 0.08
Matches are distributed among these distances:
47 215 0.47
48 7 0.02
49 185 0.40
51 7 0.02
53 3 0.01
54 3 0.01
56 5 0.01
60 37 0.08
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:123934817 original size:22 final size:22
Alignment explanation
Indices: 123934789--123934864 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
123934779 AGGTGTATAT
123934789 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
123934811 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
123934835 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
123934858 ATGTGAT
1 ATGTGAT
123934865 GAATGGGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:123934964 original size:190 final size:193
Alignment explanation
Indices: 123934640--123935078 Score: 758
Period size: 190 Copynumber: 2.3 Consensus size: 193
123934630 TGTATGAGAT
* *
123934640 ATATATATGTGATAAGGCCGAATGGCCAATGTAATGAATGTGAAAGTGCATATATGTGATAAGGC
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGC
*
123934705 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
66 CTAATGGCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
*
123934770 TGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
131 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
123934831 -TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGGGAAAGTGCATATATGAGATAAGGC
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGC
123934895 CTAATGGCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
66 CTAATGGCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
123934960 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
131 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
123935023 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 -ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATAT
123935079 ATGTGATAAG
Statistics
Matches: 233, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
190 133 0.57
191 3 0.01
192 47 0.20
194 50 0.21
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (193 bp):
ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGC
CTAATGGCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:123935116 original size:109 final size:105
Alignment explanation
Indices: 123934984--123935194 Score: 305
Period size: 107 Copynumber: 2.0 Consensus size: 105
123934974 TATATATATG
* * *
123934984 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGG
* *
123935049 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGTATA
64 CCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGTATA
* *
123935093 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCC
1 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
* *
123935158 AACGTGATGGATGTGGAAGTGTATAAATGTGATAAGT
66 AACGTGATGAATGTGAAAGTGTATAAATGTGATAAGT
123935195 CCCGAAGGGC
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
105 11 0.12
106 1 0.01
107 44 0.47
109 37 0.40
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (105 bp):
TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
AACGTGATGAATGTGAAAGTGTATAAATGTGATAAGTATA
Found at i:123942010 original size:30 final size:30
Alignment explanation
Indices: 123941976--123942036 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
123941966 TCCTTAACTC
123941976 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
123942006 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
123942036 A
1 A
123942037 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:123953418 original size:30 final size:30
Alignment explanation
Indices: 123953384--123953444 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
123953374 TCCTTAACTC
123953384 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
123953414 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
123953444 A
1 A
123953445 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:123961472 original size:14 final size:15
Alignment explanation
Indices: 123961455--123961483 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
123961445 ACACAAAAAT
123961455 TTCACACAT-ATAAA
1 TTCACACATGATAAA
123961469 TTCACACATGATAAA
1 TTCACACATGATAAA
123961484 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
TTCACACATGATAAA
Found at i:123962040 original size:20 final size:20
Alignment explanation
Indices: 123962015--123962054 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
123962005 TTTCAAAAAT
123962015 ACTTTGTCCCCGATCTGAAA
1 ACTTTGTCCCCGATCTGAAA
123962035 ACTTTGTCCCCGATCTGAAA
1 ACTTTGTCCCCGATCTGAAA
123962055 CTCTATATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (20 bp):
ACTTTGTCCCCGATCTGAAA
Found at i:123965502 original size:29 final size:29
Alignment explanation
Indices: 123965436--123965554 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
123965426 CACATACCTA
* * * *
123965436 TATATGGCCCACTAGACCC-AATTATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
123965464 CACATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
123965493 TATATGGCCCTTTAGGCCTAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
123965522 TATGTGGCCCATTAGGCCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAAATCACATT
123965550 TATAT
1 TATAT
123965555 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 20 0.26
29 56 0.74
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:123973963 original size:71 final size:71
Alignment explanation
Indices: 123973879--123974042 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
123973869 CGATTTGTCT
123973879 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
123973944 CTTTCA
66 CTTTCA
123973950 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
123974015 CTTTCA
66 CTTTCA
123974021 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
123974043 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:123974080 original size:71 final size:70
Alignment explanation
Indices: 123973879--123974076 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
123973869 CGATTTGTCT
* * * *
123973879 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
123973944 CTTTCA
65 CTTTCA
* * * *
123973950 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
123974015 CTTTCA
65 CTTTCA
* *
123974021 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
123974077 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:123986870 original size:20 final size:20
Alignment explanation
Indices: 123986845--123986882 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
123986835 GTTTATTCGC
*
123986845 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
123986865 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
123986883 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:123988543 original size:28 final size:28
Alignment explanation
Indices: 123988511--123988579 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
123988501 GCGTAGATCA
123988511 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
123988539 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
123988567 CGATA-TACCCCTA
1 CGAAATTACCCCTA
123988580 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:123994880 original size:20 final size:20
Alignment explanation
Indices: 123994855--123994892 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
123994845 GTTTATTCGC
*
123994855 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
123994875 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
123994893 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:123996553 original size:28 final size:28
Alignment explanation
Indices: 123996521--123996589 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
123996511 GCGTAGATCA
123996521 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
123996549 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
123996577 CGATA-TACCCCTA
1 CGAAATTACCCCTA
123996590 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:123999774 original size:26 final size:26
Alignment explanation
Indices: 123999745--123999801 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
123999735 AGACATTATG
123999745 ATGTAGCTAGGTGCATTGGTGATACT
1 ATGTAGCTAGGTGCATTGGTGATACT
123999771 ATGTAGCTAGGTGCATTGGTGATACT
1 ATGTAGCTAGGTGCATTGGTGATACT
123999797 ATGTA
1 ATGTA
123999802 TACACCATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.35
Consensus pattern (26 bp):
ATGTAGCTAGGTGCATTGGTGATACT
Found at i:124006027 original size:20 final size:20
Alignment explanation
Indices: 124005982--124006028 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
124005972 AAGATGACAT
*
124005982 CAAATTAACTTTTTGTTTTA
1 CAAATTAACTTTTTATTTTA
**
124006002 TTAATTAACTTTTTATTTTA
1 CAAATTAACTTTTTATTTTA
124006022 CAAATTA
1 CAAATTA
124006029 CCTTAATAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (20 bp):
CAAATTAACTTTTTATTTTA
Found at i:124014954 original size:42 final size:42
Alignment explanation
Indices: 124014907--124014991 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
124014897 ACACGCAAAG
*
124014907 TAAGCTTTCAAAAGCTTAGTAAGCCATAAACAAATAAACTTA
1 TAAGCTTTCAAAAGCTCAGTAAGCCATAAACAAATAAACTTA
* *
124014949 TAAGCTTTCAAAAGCTCAGTAAGCTATATACAAATAAACTTA
1 TAAGCTTTCAAAAGCTCAGTAAGCCATAAACAAATAAACTTA
124014991 T
1 T
124014992 CACATAACAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (42 bp):
TAAGCTTTCAAAAGCTCAGTAAGCCATAAACAAATAAACTTA
Found at i:124015351 original size:43 final size:44
Alignment explanation
Indices: 124015239--124015351 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 44
124015229 CAATGCCAAC
* * **
124015239 GTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGTCACT
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATCAATACCACT
* *
124015282 ATCCCAGACATGGTCTTACACG-AAATCAAATA-CAATACCGA-T
1 GTCCCAGACATGGTCTTACATGTAAATCAAATATCAATACC-ACT
*
124015324 GTCCCAAACATGGTCTTACATGTAAATC
1 GTCCCAGACATGGTCTTACATGTAAATC
124015352 TCAAATCGAT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACATGTAAATCAAATATCAATACCACT
Found at i:124021007 original size:19 final size:19
Alignment explanation
Indices: 124020983--124021044 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
124020973 GTGGGTCCAT
124020983 TTTCTCCGTTTTTGGCACG
1 TTTCTCCGTTTTTGGCACG
* *
124021002 TTTCT-CGCTCTTTT-TCA-T
1 TTTCTCCG-T-TTTTGGCACG
124021020 TTTCTCCGTTTTTGGCACG
1 TTTCTCCGTTTTTGGCACG
124021039 TTTCTC
1 TTTCTC
124021045 ACTCTTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 4 0.12
18 10 0.29
19 16 0.47
20 4 0.12
ACGTcount: A:0.05, C:0.27, G:0.15, T:0.53
Consensus pattern (19 bp):
TTTCTCCGTTTTTGGCACG
Found at i:124021030 original size:37 final size:37
Alignment explanation
Indices: 124020980--124021053 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
124020970 CACGTGGGTC
*
124020980 CATTTTCTCCGTTTTTGGCACGTTTCTCGCTCTTTTT
1 CATTTTCTCCGTTTTTGGCACGTTTCTCACTCTTTTT
124021017 CATTTTCTCCGTTTTTGGCACGTTTCTCACTCTTTTT
1 CATTTTCTCCGTTTTTGGCACGTTTCTCACTCTTTTT
124021054 ACTCTCTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.07, C:0.27, G:0.12, T:0.54
Consensus pattern (37 bp):
CATTTTCTCCGTTTTTGGCACGTTTCTCACTCTTTTT
Found at i:124022448 original size:42 final size:43
Alignment explanation
Indices: 124022336--124022499 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
124022326 AAAGCTTCTA
** * * *
124022336 CAATGCCAACGTCCCAGATGTGGTGTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAACAT
* * * *
124022379 CGATGGC-ACTGTCCCAAACAGGGTCTTACATGAAATCAAACAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAAACAT
124022422 -AATGCCAACGTCCCAGACATGGTCTTACATGTAAATCATAA-AT
1 CAATGCCAACGTCCCAGACATGGTCTTACATG-AAATCA-AACAT
* * * * ** *
124022465 CGATACGAACGTCGCAGATGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAA
124022500 ACACATATTG
Statistics
Matches: 96, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 26 0.27
43 44 0.46
44 26 0.27
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAACAT
Found at i:124030539 original size:46 final size:45
Alignment explanation
Indices: 124030459--124030633 Score: 145
Period size: 46 Copynumber: 3.8 Consensus size: 45
124030449 TGTAACCCGC
* * ** *
124030459 CCATAAGTGAACTCGGACTGAACTTAATAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* * *
124030505 CCATAAGTGAACTCGGACTCAACTCAACGTGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** * * *
124030551 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* *
124030598 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
124030634 ATGCCCAAAC
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.64
47 33 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:124030653 original size:46 final size:46
Alignment explanation
Indices: 124030510--124030653 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
124030500 CGCATCCATA
* *
124030510 AGTGAACTCGGACTCAACTCAACGTGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * *
124030559 --CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* * *
124030602 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
124030649 AGTGA
1 AGTGA
124030654 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.43
47 28 0.37
48 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:124044104 original size:40 final size:41
Alignment explanation
Indices: 124044060--124044151 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 41
124044050 TTAGTGACAA
*
124044060 TTTTTGAAAAACA-CCGCTATAGATAGAGCATTAGCGGCGC
1 TTTTTGAAAAACAGCCGCTATAGATAGACCATTAGCGGCGC
* * * *
124044100 TTTTTTAAAAA-AGCCGCTATAGGTCGACCATTAGCGGTGC
1 TTTTTGAAAAACAGCCGCTATAGATAGACCATTAGCGGCGC
124044140 TTTTTGAAAAAC
1 TTTTTGAAAAAC
124044152 GCCACAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (41 bp):
TTTTTGAAAAACAGCCGCTATAGATAGACCATTAGCGGCGC
Found at i:124044255 original size:40 final size:40
Alignment explanation
Indices: 124044199--124044373 Score: 142
Period size: 40 Copynumber: 4.4 Consensus size: 40
124044189 AGCTTTAGTG
* *
124044199 GCATTAGTGGCTCTTTTTGAAAAACACCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* * *
124044239 GCATTAGCGGTGC-TTTT-AAAAAAAGCCGCTAT-GAATCAA
1 GCATTAGCGGCGCTTTTTGAAAAACA-CCGCTATAG-ATCGA
* * * *
124044278 GCATTAGCGACGCTTTTTAAAAAACGCCGCTATAGGTC-A
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* * * * *
124044317 ACGATTAGCAGCACTTTTTGAAAAACGCCACTATAGATCGA
1 GC-ATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* * *
124044358 GCTTTAGTGGCACTTT
1 GCATTAGCGGCGCTTT
124044374 AGCAAAAATG
Statistics
Matches: 107, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
38 7 0.07
39 28 0.26
40 64 0.60
41 8 0.07
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
Found at i:124046301 original size:80 final size:80
Alignment explanation
Indices: 124046136--124046322 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
124046126 AATTGAATGA
* * * * * *
124046136 TATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCTGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
124046201 TTGTGCTAGTGGCTAC
66 TTGTGCGAGT-GCTAC
*
124046217 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
124046280 TTCGTGCGAGT-CATTC
66 TT-GTGCGAGTGC-TAC
*
124046296 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
124046323 GTGCAAATCG
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 83 0.90
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGCTAC
Found at i:124046341 original size:40 final size:39
Alignment explanation
Indices: 124046174--124046328 Score: 143
Period size: 40 Copynumber: 3.9 Consensus size: 39
124046164 TGCTGGAAAT
* * * *
124046174 TATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CA
* * * * *
124046214 TACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAA
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCA
* *
124046253 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
*
124046293 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
124046329 ATCGTGATAT
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
Found at i:124053068 original size:40 final size:40
Alignment explanation
Indices: 124053023--124053189 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
124053013 CGGAATATAA
124053023 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
124053063 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
124053103 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
124053143 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
124053182 CCGGATAT
1 CCGGATAT
124053190 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:124053173 original size:80 final size:79
Alignment explanation
Indices: 124053023--124053189 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
124053013 CGGAATATAA
* *
124053023 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
124053088 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
124053103 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
124053165 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
124053182 CCGGATAT
1 CCGGATAT
124053190 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:124054037 original size:17 final size:19
Alignment explanation
Indices: 124054014--124054059 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
124054004 AAGAAGCATG
124054014 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
124054032 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
124054050 AATCATGCTC
1 AATCATGCTC
124054060 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:124061075 original size:40 final size:40
Alignment explanation
Indices: 124061030--124061196 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
124061020 CGGAATATAA
124061030 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
124061070 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
124061110 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
124061150 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
124061189 CCGGATAT
1 CCGGATAT
124061197 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:124061180 original size:80 final size:79
Alignment explanation
Indices: 124061030--124061196 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
124061020 CGGAATATAA
* *
124061030 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
124061095 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
124061110 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
124061172 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
124061189 CCGGATAT
1 CCGGATAT
124061197 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:124062044 original size:17 final size:19
Alignment explanation
Indices: 124062021--124062066 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
124062011 AAGAAGCATG
124062021 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
124062039 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
124062057 AATCATGCTC
1 AATCATGCTC
124062067 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:124065748 original size:40 final size:40
Alignment explanation
Indices: 124065686--124065901 Score: 314
Period size: 40 Copynumber: 5.4 Consensus size: 40
124065676 AAACCAAGTA
* * *
124065686 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
124065725 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
124065765 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
124065805 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
124065845 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
124065885 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
124065902 CGTTATCATC
Statistics
Matches: 165, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.08
40 151 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:124071119 original size:2 final size:2
Alignment explanation
Indices: 124071112--124071139 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
124071102 CGGCTCTAGC
124071112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124071140 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124072477 original size:40 final size:40
Alignment explanation
Indices: 124072419--124072621 Score: 219
Period size: 40 Copynumber: 5.1 Consensus size: 40
124072409 TGAATGATAC
* * * *
124072419 CCGGGCCAAGTCCTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
124072459 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
124072499 CCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * ** *
124072539 CCGGGCTAAGACCCAAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
124072579 CCGGGTTAAGACCCG-AGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
124072618 CCGG
1 CCGG
124072622 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 20 0.14
40 118 0.86
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:124079624 original size:40 final size:40
Alignment explanation
Indices: 124079569--124079772 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 40
124079559 TGAATGATAC
* *
124079569 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
124079609 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
124079649 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
124079689 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
124079729 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
124079769 CCGG
1 CCGG
124079773 TAAATTCCGA
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 140 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:124086266 original size:123 final size:123
Alignment explanation
Indices: 124086047--124086385 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
124086037 GAATTATGTG
*
124086047 AAATGAAACATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
124086112 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
124086170 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
124086235 GCTAAGTCCCGAAGGTAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
124086293 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
124086358 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
124086386 AATTATATCC
Statistics
Matches: 205, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 205 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:124086423 original size:40 final size:40
Alignment explanation
Indices: 124086354--124086597 Score: 294
Period size: 40 Copynumber: 6.1 Consensus size: 40
124086344 TGAATGATAC
* * * **
124086354 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * * * *
124086394 CCGGGTTAAGACCAGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG-TTATAT
124086434 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
124086474 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
124086514 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * ** *
124086554 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
124086594 CCGG
1 CCGG
124086598 TTGTATTCCG
Statistics
Matches: 179, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:124088034 original size:40 final size:39
Alignment explanation
Indices: 124087982--124088132 Score: 232
Period size: 40 Copynumber: 3.8 Consensus size: 39
124087972 GGGTGTTACA
*
124087982 TACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAG
1 TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
124088021 TAGTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 TA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
124088061 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAG
1 T-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAG
*
124088101 TCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 T-ACTCGCACAAATGCCTTCGGGACTTAGCCC
124088133 CGTTATCATC
Statistics
Matches: 104, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
Found at i:124094141 original size:29 final size:27
Alignment explanation
Indices: 124094107--124094209 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
124094097 TACTCAATCA
*
124094107 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
124094136 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
124094165 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
124094194 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
124094210 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:124098088 original size:49 final size:49
Alignment explanation
Indices: 124098032--124098442 Score: 689
Period size: 49 Copynumber: 8.4 Consensus size: 49
124098022 TACATATATG
* * *
124098032 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
124098081 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
124098130 TGTGATGAGGCCTAATGGCCGATGT-AGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGA-TGAATGTGAAAGTGTATGTATA
*
124098179 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
124098228 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
124098277 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
124098326 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
124098375 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
124098424 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
124098443 TAATGTAAAA
Statistics
Matches: 348, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 1 0.00
49 346 0.99
50 1 0.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:124098230 original size:27 final size:27
Alignment explanation
Indices: 124098200--124098284 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
124098190 CTAATGGCCG
124098200 ATGTGATGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *** **
124098227 ATGTGATG-AGGCCTAA-TGGCCG---
1 ATGTGATGAATGTGAAAGTGGATGTAT
124098249 ATGTGATGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
124098276 ATGTGATGA
1 ATGTGATGA
124098285 GGCCTAATGG
Statistics
Matches: 41, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
22 8 0.20
23 4 0.10
24 4 0.10
25 4 0.10
26 4 0.10
27 17 0.41
ACGTcount: A:0.31, C:0.05, G:0.34, T:0.31
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGGATGTAT
Found at i:124098594 original size:37 final size:37
Alignment explanation
Indices: 124098544--124098628 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
124098534 GGAATATGTT
*
124098544 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
124098581 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
124098618 CCGGGTAAGAC
1 CCGGGTAAGAC
124098629 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:124102071 original size:27 final size:26
Alignment explanation
Indices: 124102015--124102122 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
124102005 AGCATGGCTG
* * * *
124102015 CCAGAATAGATAATGTGACAGAGTCG
1 CCAGAACAGATAATGTGGCAGAGCCA
*
124102041 CCAGAACAGATAATCGTGCCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
124102068 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
124102095 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
124102122 C
1 C
124102123 TAGGACGCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 56 0.78
28 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:124102559 original size:16 final size:16
Alignment explanation
Indices: 124102538--124102580 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
124102528 TCTCAAAATG
124102538 TCGGCTTTTCGACATT
1 TCGGCTTTTCGACATT
124102554 TCGGCTTTTCGACATT
1 TCGGCTTTTCGACATT
124102570 TCGGCTTTTCG
1 TCGGCTTTTCG
124102581 GCTTTCGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.09, C:0.26, G:0.21, T:0.44
Consensus pattern (16 bp):
TCGGCTTTTCGACATT
Found at i:124102563 original size:8 final size:8
Alignment explanation
Indices: 124102538--124102585 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
124102528 TCTCAAAATG
124102538 TCGGCTTT
1 TCGGCTTT
* *
124102546 TCGACATT
1 TCGGCTTT
124102554 TCGGCTTT
1 TCGGCTTT
* *
124102562 TCGACATT
1 TCGGCTTT
124102570 TCGGCTTT
1 TCGGCTTT
124102578 TCGGCTTT
1 TCGGCTTT
124102586 CGCCAATCTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.08, C:0.25, G:0.21, T:0.46
Consensus pattern (8 bp):
TCGGCTTT
Found at i:124104335 original size:40 final size:39
Alignment explanation
Indices: 124104271--124104458 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
124104261 GCTACTCGTT
* * * ** *
124104271 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
124104311 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
124104351 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
124104390 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
124104429 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
124104459 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:124104386 original size:39 final size:39
Alignment explanation
Indices: 124104307--124104459 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
124104297 TATGGTAACC
* *
124104307 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
124104347 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
124104386 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
124104425 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
124104460 TCGAACATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:124104437 original size:78 final size:79
Alignment explanation
Indices: 124104276--124104458 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
124104266 TCGTTCAAAC
* * **
124104276 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
124104341 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
124104356 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
124104420 CAATTTGCACAATT
66 CAACTCGCACAATT
124104434 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
124104459 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:124112342 original size:40 final size:39
Alignment explanation
Indices: 124112278--124112465 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
124112268 GCTACTCGTT
* * * ** *
124112278 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
124112318 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
124112358 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
124112397 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
124112436 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
124112466 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:124112393 original size:39 final size:39
Alignment explanation
Indices: 124112314--124112466 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
124112304 TATGGTAACC
* *
124112314 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
124112354 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
124112393 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
124112432 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
124112467 TCGAACATTA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:124112444 original size:78 final size:79
Alignment explanation
Indices: 124112283--124112465 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
124112273 TCGTTCAAAC
* * **
124112283 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
124112348 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
124112363 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
124112427 CAATTTGCACAATT
66 CAACTCGCACAATT
124112441 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
124112466 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:124116840 original size:40 final size:39
Alignment explanation
Indices: 124116673--124116842 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
124116663 AGAAATTGAA
*
124116673 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
124116712 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
124116752 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
124116792 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
124116832 TGATATCCGGG
1 TGATATCCGGG
124116843 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 18 0.17
40 81 0.76
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:124124780 original size:40 final size:39
Alignment explanation
Indices: 124124612--124124782 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
124124602 AGAAATTGAA
* *
124124612 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
124124652 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
124124692 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
124124732 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
124124772 TGATATCCGGG
1 TGATATCCGGG
124124783 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:124133457 original size:27 final size:27
Alignment explanation
Indices: 124133433--124133488 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
124133423 AGAAAAGCTG
124133433 CCAATAACAGTAAATGTGGCAAAGCCA
1 CCAATAACAGTAAATGTGGCAAAGCCA
* ** *
124133460 CCAGTAACAGTAGTTGTGGCAGAG-CA
1 CCAATAACAGTAAATGTGGCAAAGCCA
124133486 CCA
1 CCA
124133489 GTATAGTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAATAACAGTAAATGTGGCAAAGCCA
Found at i:124135684 original size:40 final size:40
Alignment explanation
Indices: 124135618--124135784 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
124135608 AAATTGAATG
* * *
124135618 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
124135657 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
124135697 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
124135737 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
124135777 ATATCCGG
1 ATATCCGG
124135785 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:124143758 original size:40 final size:41
Alignment explanation
Indices: 124143641--124143758 Score: 116
Period size: 40 Copynumber: 2.9 Consensus size: 41
124143631 AATGATATCC
* * * * **
124143641 GGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA-TCT
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATTCT
* **
124143681 GGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATTC-
1 GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATTCT
*
124143721 GGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTATAT
1 GGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATTATAT
124143759 CCGGTTATAT
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.02
40 60 0.95
41 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (41 bp):
GGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATTCT
Found at i:124153423 original size:17 final size:18
Alignment explanation
Indices: 124153401--124153434 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
124153391 TCCTAGGCTA
124153401 TGTGGGC-CACACGGGCG
1 TGTGGGCTCACACGGGCG
*
124153418 TGTGGGCTCACATGGGC
1 TGTGGGCTCACACGGGC
124153435 CCCGTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
TGTGGGCTCACACGGGCG
Done.