Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 404 of 770
Found at i:124154635 original size:47 final size:47
Alignment explanation
Indices: 124154581--124154702 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
124154571 GCATTGGCAC
* *
124154581 TAAGACAAGGATACCCTATAAGACCTTGTTTGGAACATGGAATTTGG
1 TAAGACAAGGATACCATATAAGACCATGTTTGGAACATGGAATTTGG
* *
124154628 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATATAAGACCATGTTTGGAACATGGAATTTGG
* * *
124154675 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATATAAGACCATG
124154703 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATATAAGACCATGTTTGGAACATGGAATTTGG
Found at i:124154747 original size:56 final size:56
Alignment explanation
Indices: 124154681--124154889 Score: 212
Period size: 56 Copynumber: 3.8 Consensus size: 56
124154671 TTGGTAAGAT
* * *
124154681 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGAGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTTATAAGAGGA
* * * * * *
124154737 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAG-GCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-TTATAAGAGGA
* * * * * *
124154793 AAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAG-TTCAT-A-AGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTTATAAGAGGA
* * *
124154845 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT
124154890 CAAAAAGGAA
Statistics
Matches: 127, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 6 0.05
53 35 0.28
54 2 0.02
55 32 0.25
56 46 0.36
57 6 0.05
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTTATAAGAGGA
Found at i:124154865 original size:53 final size:53
Alignment explanation
Indices: 124154681--124154891 Score: 217
Period size: 53 Copynumber: 3.9 Consensus size: 53
124154671 TTGGTAAGAT
* * * * *
124154681 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGAGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAG-TTCAT-A-AGGC
* * * *
124154737 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * *
124154792 AAAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
* * *
124154845 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
124154892 AAAAGGAAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.03
53 44 0.33
54 1 0.01
55 39 0.29
56 43 0.32
57 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:124154905 original size:108 final size:111
Alignment explanation
Indices: 124154689--124154901 Score: 263
Period size: 108 Copynumber: 2.0 Consensus size: 111
124154679 ATAAGGATAT
* * *
124154689 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGAGGAAAGGAAATCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTCATAAGAGGAAAGGAAACCACGTAAGA
* * * * *
124154754 CCATGTCAAGACATGACATTGATGAGTTACTATAAGGCAAAGGTCC
66 CCATGTCAAGACATGACAATGATAAGTTACAAAAAGGAAAAGGTCC
* * * * *
124154800 CATGTAAGACCATGTCAAGGCATGGCATTGGTGAG-TTCAT-A-AGGCAAGGATACCACGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTCATAAGAGGAAAGGAAACCACGTAAGA
* *
124154862 CCATGTCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAA
66 CCATGTCAAGACATGACAATGATAAGTTACAAAAAGGAAAA
124154902 AGGTTCCCTA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
107 9 0.10
108 41 0.47
109 1 0.01
110 4 0.05
111 32 0.37
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (111 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTCATAAGAGGAAAGGAAACCACGTAAGA
CCATGTCAAGACATGACAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:124171171 original size:40 final size:39
Alignment explanation
Indices: 124171078--124171219 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 39
124171068 ATGATGTCCG
* * *
124171078 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
124171117 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
124171157 AGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
* *
124171197 GGGCTATGTCCCGAAGGTATTTG
1 -GGCTAAGTCCCGAAGGCATTTG
124171220 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
39 3 0.03
40 73 0.83
41 12 0.14
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:124171226 original size:80 final size:79
Alignment explanation
Indices: 124171081--124171242 Score: 179
Period size: 80 Copynumber: 2.0 Consensus size: 79
124171071 ATGTCCGGGC
* **
124171081 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
124171146 TTA-CTAAATCCAGGT
66 -TAGCTAAATCC-GGT
* * * *
124171161 TAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTATAACCGGGCTATG-TCCCGAAGGTATTTGAAC
1 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATAACCGGACTAAGAT-CCGAAGGCATTTGAAC
*
124171223 GAGTAGCTATATCCGGT
63 GAGTAGCTAAATCCGGT
124171240 TAA
1 TAA
124171243 ACTCCGAAGG
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
79 9 0.13
80 53 0.76
81 8 0.11
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:124173164 original size:38 final size:39
Alignment explanation
Indices: 124173045--124173184 Score: 212
Period size: 39 Copynumber: 3.6 Consensus size: 39
124173035 CCAGCACAAA
* *
124173045 TTCGGGACTTAACCCGGATATCACAACCGCACAATTGCC
1 TTCGGGACTTAGCCCGGATATCACAATCGCACAATTGCC
* *
124173084 TTCGGGACTTAGCCCGGATATCATAGCTCGCACAATTGCC
1 TTCGGGACTTAGCCCGGATATCACA-ATCGCACAATTGCC
*
124173124 TTCGGG-CTTAGCCCGGATATCACAATTGCACAATTGCC
1 TTCGGGACTTAGCCCGGATATCACAATCGCACAATTGCC
124173162 TTCGGG-CTTAGCCCGGATATCAC
1 TTCGGGACTTAGCCCGGATATCAC
124173185 TCGAACATTC
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.38
39 40 0.43
40 18 0.19
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCGGGACTTAGCCCGGATATCACAATCGCACAATTGCC
Found at i:124183924 original size:29 final size:28
Alignment explanation
Indices: 124183862--124183962 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
124183852 GTGACGAGAT
* * *
124183862 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-GATATA
* *
124183891 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGA-TATA
* *
124183920 TGGCACTATGTGTGCGGGCTT-GA-ATCA
1 TGGCACTAAGTGTGCGAGCTTGGATAT-A
124183947 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
124183963 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.03
27 16 0.27
28 3 0.05
29 39 0.65
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGGATATA
Found at i:124183969 original size:27 final size:27
Alignment explanation
Indices: 124183892--124183969 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 27
124183882 TGTAATGTAC
*
124183892 GGCACTAAGTGTGCGAGTTTGGACTATAT
1 GGCACTAAGTGTGCGAGATT-GAC-ATAT
* * *
124183921 GGCACTATGTGTGCGGGCTTGA-ATCAT
1 GGCACTAAGTGTGCGAGATTGACAT-AT
*
124183948 GGCACTAAGTGTGCGTGATTGA
1 GGCACTAAGTGTGCGAGATTGA
124183970 GTATTAAGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 21 0.50
28 2 0.05
29 17 0.40
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.29
Consensus pattern (27 bp):
GGCACTAAGTGTGCGAGATTGACATAT
Found at i:124191904 original size:29 final size:28
Alignment explanation
Indices: 124191872--124191974 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 28
124191862 GTGACGAGAT
* *
124191872 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
124191901 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* **
124191930 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA
124191959 TGGCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
124191975 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.07
29 56 0.92
30 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:124198703 original size:2 final size:2
Alignment explanation
Indices: 124198698--124198729 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
124198688 GTGAAAGTCG
124198698 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
124198730 TCTGAAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:124199125 original size:40 final size:40
Alignment explanation
Indices: 124199070--124199190 Score: 165
Period size: 40 Copynumber: 3.0 Consensus size: 40
124199060 ATTTGATGTG
124199070 TATCCCGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCCGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * *
124199110 TATCCAGGCTTAAAGACCTGCAGGCTATATGTTGGAATTA
1 TATCCCGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
** *
124199150 TA-CCCGGACTT-AAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCCGG-CTTAAAGACCCGCAGGCTATATGCTGGAATTA
124199189 TA
1 TA
124199191 ACCGGACTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
39 29 0.41
40 42 0.59
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (40 bp):
TATCCCGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:124199185 original size:39 final size:39
Alignment explanation
Indices: 124199087--124199214 Score: 159
Period size: 39 Copynumber: 3.3 Consensus size: 39
124199077 GCTTAAAGAC
* * *
124199087 CCGCAGGCTATATGCTGGAATTATATCCAGG-CTTAAAGA
1 CCGCAGGCTATATGCTGGAATTATA-CCCGGACTTAAGGT
*
124199126 CCTGCAGGCTATATGTTGGAATTATACCCGGACTTAAGGT
1 CC-GCAGGCTATATGCTGGAATTATACCCGGACTTAAGGT
* *
124199166 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATACCCGGACTTAAGGT
**
124199205 CTACAGGCTA
1 CCGCAGGCTA
124199215 CGCGCTGGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 48 0.62
40 30 0.38
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (39 bp):
CCGCAGGCTATATGCTGGAATTATACCCGGACTTAAGGT
Found at i:124199222 original size:39 final size:39
Alignment explanation
Indices: 124199142--124199224 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
124199132 GGCTATATGT
* * * *
124199142 TGGAATTATACCCGGACTTAAGGTCCGCAGGCTATGTGC
1 TGGAATTATAACCGGACTTAAGGTCCACAGGCTACGCGC
*
124199181 TGGAATTATAACCGGACTTAAGGTCTACAGGCTACGCGC
1 TGGAATTATAACCGGACTTAAGGTCCACAGGCTACGCGC
124199220 TGGAA
1 TGGAA
124199225 ATATGTCCGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TGGAATTATAACCGGACTTAAGGTCCACAGGCTACGCGC
Found at i:124208769 original size:40 final size:40
Alignment explanation
Indices: 124208604--124208770 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
124208594 AAATTGAATG
* * **
124208604 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
124208643 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
124208683 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
** *
124208723 CGATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
124208763 ATATCCGG
1 ATATCCGG
124208771 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 17 0.16
40 85 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:124210961 original size:46 final size:46
Alignment explanation
Indices: 124210894--124211066 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
124210884 TGTAACCCGC
* *
124210894 CCATACGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
124210940 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
124210990 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
124211033 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
124211067 AGATGCTCAA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:124211015 original size:93 final size:93
Alignment explanation
Indices: 124210902--124211072 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
124210892 GCCCATACGT
* *
124210902 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
124210967 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
*
124210995 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
124211060 CGAGTTCAGATGC
66 CGAGTTCAGATGC
124211073 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:124212594 original size:20 final size:20
Alignment explanation
Indices: 124212528--124212594 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
124212518 ATTTTGAAAA
*
124212528 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
124212548 ACATGACATGTATGAAATGC
1 ACATGATATGTATGATATGC
124212568 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
124212588 ACATGAT
1 ACATGAT
124212595 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:124212670 original size:24 final size:23
Alignment explanation
Indices: 124212645--124212761 Score: 164
Period size: 23 Copynumber: 5.0 Consensus size: 23
124212635 AGGAAGTGTA
124212645 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
124212668 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
124212691 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
124212714 AAAAGGGCTTTTGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
124212738 CAAAGTGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTATGCC-CCAGTTAT
124212762 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
23 46 0.54
24 29 0.34
25 10 0.12
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:124212990 original size:31 final size:31
Alignment explanation
Indices: 124212955--124213018 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
124212945 CATTTACAGT
124212955 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
124212986 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
124213017 AA
1 AA
124213019 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:124215753 original size:93 final size:93
Alignment explanation
Indices: 124215642--124215812 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
124215632 GCCCCAAAGT
* *
124215642 GAACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACAAG-TCAGGACATTCGCATCCATAAATGAACTCGAACTCAACTCA
124215706 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* ** * *
124215735 GAACTCAGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGTCAGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
124215800 CGAGTTCGGATGC
66 CGAGTTCGGATGC
124215813 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGTCAGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:124215800 original size:46 final size:46
Alignment explanation
Indices: 124215638--124215805 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 46
124215628 ACCCGCCCCA
* * * *
124215638 AAGTGAACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCAT
1 AAGTGAACTCGAACTCAACTCAACGAG-TTAGGACATTTGCATCCAT
* * * * *
124215684 AAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T
1 AAGTGAACTCGAACTCAACTCAACGAGTTAGGA---C-ATTTGCATCCAT
* * *
124215732 CA-CGAACTC-AGACTCAACTCAACGAGTTTGGACATTTGCATCCAT
1 AAGTGAACTCGA-ACTCAACTCAACGAGTTAGGACATTTGCATCCAT
124215777 AAGTGAACTCGAACTCAACTCAACGAGTT
1 AAGTGAACTCGAACTCAACTCAACGAGTT
124215806 CGGATGCTCA
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 5 0.05
46 48 0.49
47 27 0.28
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (46 bp):
AAGTGAACTCGAACTCAACTCAACGAGTTAGGACATTTGCATCCAT
Found at i:124222262 original size:27 final size:26
Alignment explanation
Indices: 124222231--124222325 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 26
124222221 TTAGTTTAAC
* *
124222231 AAATTACTGAAATACCTTCGACTTGTA
1 AAATTACTCAAATACC-TCGATTTGTA
* *
124222258 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TA-CCTCGATTTGTA
*
124222285 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCTCGATTTGTA
* *
124222312 AAATCACTGAAATA
1 AAATTACTCAAATA
124222326 AGATAGAATT
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
26 3 0.05
27 46 0.84
28 6 0.11
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACTCAAATACCTCGATTTGTA
Found at i:124222370 original size:27 final size:27
Alignment explanation
Indices: 124222330--124222891 Score: 445
Period size: 27 Copynumber: 20.9 Consensus size: 27
124222320 GAAATAAGAT
* *
124222330 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
124222357 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124222384 AAAATTACTGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
124222411 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124222438 AGAATTACCGATTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
**
124222465 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124222492 AAAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
124222519 AGAATTACCATTTTGCCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
124222546 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124222573 AGAATTACTGTTTTATCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* ** *** *
124222600 AAAATTATTGAAATACCCT-TAGTTTAC
1 AGAATTACCGTTTTACCCTCGA-TTTAC
* * **** *
124222627 AAAATTATCAAAATACCCTCGATCAGTA-
1 AGAATTACCGTTTTACCCTCGAT--TTAC
**** * * *
124222655 A-AATTACCAAAGTACCCCCGGTTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* ***** * * *
124222681 AAAATTACTAAAATATCGTCAATTTTA-
1 AGAATTACCGTTTTACCCTCGA-TTTAC
* *** * **
124222708 A-AATTACTGAAATGCCCTCGATTTGT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124222734 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
*
124222761 A-AATTACCGTTTCACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * * *
124222787 AAAATTATCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124222814 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
124222841 AAAATTACCATTTTACCCGC-AGTTTAC
1 AGAATTACCGTTTTACCCTCGA-TTTAC
*
124222868 AAAATTACCGTTTTACCCTCGATT
1 AGAATTACCGTTTTACCCTCGATT
124222892 GTGAAATTAC
Statistics
Matches: 448, Mismatches: 75, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
25 5 0.01
26 42 0.09
27 392 0.88
28 7 0.02
29 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:124222926 original size:27 final size:27
Alignment explanation
Indices: 124222904--124223313 Score: 540
Period size: 27 Copynumber: 15.3 Consensus size: 27
124222894 GAAATTACTA
* *
124222904 AAATACCCCTGTAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
** * **
124222931 AAATACCCCTGGT-TTGTAAAATTACTA
1 AAATACCCCT-GTAGGGTAGAATTACCG
** *
124222958 AAATACCCCTG-ACTTGTAAAATTACCG
1 AAATACCCCTGTA-GGGTAGAATTACCG
* * *
124222985 AAATACCCCTATAGGGTAGAACTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
124223012 CAATA-CCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
124223038 AAATA-CCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
124223064 GAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
124223091 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
124223118 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
124223145 CAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
124223172 AAATACCCTTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
124223199 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
124223226 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
124223253 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
124223280 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
124223307 AGATACC
1 AAATACC
124223314 TTGTGAGGTA
Statistics
Matches: 341, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
26 49 0.14
27 289 0.85
28 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:124223768 original size:31 final size:31
Alignment explanation
Indices: 124223733--124223811 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
124223723 TTACATTCAC
* *
124223733 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTAATACTG
*
124223764 ATTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTAATACTG
*
124223795 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
124223812 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTAATACTG
Found at i:124223772 original size:6 final size:6
Alignment explanation
Indices: 124223733--124223820 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
124223723 TTACATTCAC
* * *
124223733 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
124223782 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
124223821 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:124225929 original size:27 final size:27
Alignment explanation
Indices: 124225889--124226450 Score: 490
Period size: 27 Copynumber: 20.9 Consensus size: 27
124225879 GAAATAAGAT
*
124225889 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
124225916 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124225943 AAAATTACTGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
124225970 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124225997 AAAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
**
124226024 AGAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
*
124226051 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124226078 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
124226105 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124226132 AGAATTACTGTTTTATCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* ** *** *
124226159 AAAATTATTGAAATACCCT-TAGTTTAC
1 AGAATTACCGTTTTACCCTCGA-TTTAC
* **** *
124226186 AAAATTACCAAAATACCCTCGATCAGTA-
1 AGAATTACCGTTTTACCCTCGAT--TTAC
**** * * *
124226214 A-AATTACCAAAGTACCCCCGGTTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* ***** *
124226240 AAAATTACTAAAATACCGTCGATTTTA-
1 AGAATTACCGTTTTACCCTCGA-TTTAC
* *** * **
124226267 A-AATTACTGAAATGCCCTCGATTTGT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124226293 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124226320 A-AATTACCGTTTCACCTTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * * *
124226346 AAAATTATCGTTTTACCCTCAATTTAT
1 AGAATTACCGTTTTACCCTCGATTTAC
* *
124226373 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCGTTTTACCCTCGATTTAC
* * *
124226400 AAAATTACCATTTTACCCGC-AGTTTAC
1 AGAATTACCGTTTTACCCTCGA-TTTAC
*
124226427 AAAATTACCGTTTTACCCTCGATT
1 AGAATTACCGTTTTACCCTCGATT
124226451 GTGAAATTAC
Statistics
Matches: 455, Mismatches: 68, Indels: 24
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.01
26 43 0.09
27 398 0.87
28 7 0.02
29 2 0.00
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (27 bp):
AGAATTACCGTTTTACCCTCGATTTAC
Found at i:124226274 original size:26 final size:27
Alignment explanation
Indices: 124225902--124226551 Score: 168
Period size: 27 Copynumber: 24.2 Consensus size: 27
124225892 ATTACCATTT
* * ****
124225902 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* *****
124225929 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ****
124225956 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ****
124225983 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ***
124226010 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ****
124226037 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ***
124226064 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ****
124226091 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * *****
124226118 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ***
124226145 TATCCTCGATTTACAAAATTATTGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
124226172 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
124226199 TACCCTCGA-TCAGTAAAATTACCAAAG
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * *
124226226 TACCCCCGGTTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* **
124226253 TACCGTCGATTT-TAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * ***
124226279 TGCCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
***
124226306 TACCCTCGATTTAT-AAATTACC-GTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * * ****
124226331 TCACCTTCGATTTACAAAATTATCGTTT
1 T-ACCCTCGATTTATAAAATTACCAAAA
* * ***
124226359 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ***
124226386 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ****
124226413 TACCCGC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * **
124226440 TACCCTCGA-TTGTGAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
** *
124226466 TACCC-CTG-TAGGATAGAATTACCAAAA
1 TACCCTC-GAT-TTATAAAATTACCAAAA
* * *
124226493 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* * * *
124226520 TACCCTTGACTTGTAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
124226547 TACCC
1 TACCC
124226552 CTATAGGGTA
Statistics
Matches: 516, Mismatches: 92, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
25 4 0.01
26 61 0.12
27 443 0.86
28 8 0.02
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:124226620 original size:107 final size:105
Alignment explanation
Indices: 124226464--124226775 Score: 383
Period size: 107 Copynumber: 2.9 Consensus size: 105
124226454 AAATTACTGA
* * ** *
124226464 AATACCCCTGTAGGATAGAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT-TG
1 AATA-CCCTGTAGGGTAGAATTACCGAAATACCCCT-GTAGGTAGAATTACTAAAATACCCTAT-
**
124226528 ACTTGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGC
63 A-GGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGC
* **
124226572 AATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGATAGAATTACTGGAATACCCCTATA
1 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG-TAGAATTACTAAAATA-CCCTATA
* *
124226637 GGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
64 GGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGC
* **
124226679 AATACCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTTTAATACCCCTATA
1 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTA-GGTAGAATTACTAAAATA-CCCTATA
* * *
124226744 GGGTAGAATTACCGAAATACCCTTGTAGGGTA
64 GGGTAAAATTACCGAAATACCCCTATAGGGTA
124226776 TAAATACCGA
Statistics
Matches: 183, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
106 3 0.02
107 168 0.92
108 11 0.06
109 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (105 bp):
AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGTAGAATTACTAAAATACCCTATAGG
GTAAAATTACCGAAATACCCCTATAGGGTAGAATTATCGC
Found at i:124226629 original size:80 final size:80
Alignment explanation
Indices: 124226536--124226772 Score: 318
Period size: 80 Copynumber: 3.0 Consensus size: 80
124226526 TGACTTGTAA
* *
124226536 AATTACCGAAATACCCCTATAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAGAATTACTGAAA
1 AATTACCGGAATACCCCTATAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACTGAAA
124226600 TACCCCTGTAGGATAG
65 TACCCCTGTAGGATAG
* *
124226616 AATTACTGGAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA-TCGCA
1 AATTACCGGAATACCCCTATAGGGTAGAATTA-CGAAATACCCCTGTAGGGTAGAATTACT-GAA
*
124226680 ATA-CCCTGTAGGGTAG
64 ATACCCCTGTAGGATAG
* ** * *
124226696 AATTACCGGAATACCCCTGTAGGGTAGAATTACTTTAATACCCCTATAGGGTAGAATTACCGAAA
1 AATTACCGGAATACCCCTATAGGGTAGAATTAC-GAAATACCCCTGTAGGGTAGAATTACTGAAA
*
124226761 TACCCTTGTAGG
65 TACCCCTGTAGG
124226773 GTATAAATAC
Statistics
Matches: 138, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 106 0.77
81 31 0.22
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (80 bp):
AATTACCGGAATACCCCTATAGGGTAGAATTACGAAATACCCCTGTAGGGTAGAATTACTGAAAT
ACCCCTGTAGGATAG
Found at i:124226783 original size:27 final size:27
Alignment explanation
Indices: 124226455--124226788 Score: 352
Period size: 27 Copynumber: 12.4 Consensus size: 27
124226445 TCGATTGTGA
* *
124226455 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
124226482 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** * ** *
124226509 AATTACTAAAATACCCTTG-ACTTGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
124226536 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
124226563 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
124226589 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
124226616 AATTACTGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
124226643 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
124226670 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
124226696 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
124226723 AATTACTTTAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
124226750 AATTACCGAAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
124226777 AAATACCGAAAT
1 AATTACCGAAAT
124226789 TGTGACAGCC
Statistics
Matches: 258, Mismatches: 43, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
26 47 0.18
27 208 0.81
28 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:124228639 original size:40 final size:40
Alignment explanation
Indices: 124228545--124228769 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
124228535 TATTCGAATG
* * *
124228545 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
124228586 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
124228626 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
124228666 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
124228706 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
124228746 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
124228770 CTTGCGCAAG
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.82
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:124230192 original size:27 final size:27
Alignment explanation
Indices: 124230157--124230223 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
124230147 GGTACGGGTG
124230157 TTACAGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
*
124230184 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
* *
124230211 TTACCGAGATACC
1 TTACAGAAATACC
124230224 TTGTGAGGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
TTACAGAAATACCCCTGTAGGGTAGAA
Found at i:124230681 original size:31 final size:31
Alignment explanation
Indices: 124230643--124230722 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
124230633 TTGCATTCAC
* * * *
124230643 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
* *
124230674 ATTCTGATTCTAATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
124230705 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
124230723 GTTCTGATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTAATACTG
Found at i:124230682 original size:6 final size:6
Alignment explanation
Indices: 124230643--124230730 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
124230633 TTGCATTCAC
* * *
124230643 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
124230691 ATCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
124230731 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.08
6 52 0.79
7 6 0.09
8 3 0.05
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:124240694 original size:40 final size:40
Alignment explanation
Indices: 124240639--124240770 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
124240629 ATTTGATGTG
*
124240639 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
*
124240679 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
** *
124240719 TA-CCTGGACTT-AAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCC-GGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
*
124240758 TAACCGGACTTAA
1 TATCCGGACTTAA
124240771 GGTCCGCAGA
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
39 35 0.41
40 50 0.59
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:124240751 original size:39 final size:38
Alignment explanation
Indices: 124240656--124240779 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 38
124240646 GCTTAAAGAC
* **
124240656 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTATATGCTGGAATTATA-CCGGACTT-AAGGT
124240696 CCGCAGGCTATATGCTGGAATTATACCTGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATACC-GGACTTAAGGT
*
124240735 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTAT-ACCGGACTTAAGGT
124240774 CCGCAG
1 CCGCAG
124240780 ACTACGCACT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
39 45 0.58
40 33 0.42
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
CCGCAGGCTATATGCTGGAATTATACCGGACTTAAGGT
Found at i:124242018 original size:27 final size:27
Alignment explanation
Indices: 124241977--124242180 Score: 201
Period size: 27 Copynumber: 7.5 Consensus size: 27
124241967 ATAAAACGAA
* *
124241977 AAAAATAGTCATTTTACCTCATAAGGG
1 AAAAATAGTCATTTTACCACGTAAGGG
** *
124242004 AAAAATAGTTGTTTTACCTCGTAAGGG
1 AAAAATAGTCATTTTACCACGTAAGGG
* * **
124242031 AAAAACAATTGTTTTACCACGTAAGGG
1 AAAAATAGTCATTTTACCACGTAAGGG
* * * *
124242058 CATAACAGTCATTTTACCATGTAAGGG
1 AAAAATAGTCATTTTACCACGTAAGGG
*
124242085 AAAAATATTCATTTTACCACGTAAGGG
1 AAAAATAGTCATTTTACCACGTAAGGG
* * *
124242112 CAAAACAGTCATTTTACCACATAAGGG
1 AAAAATAGTCATTTTACCACGTAAGGG
* **
124242139 CAAAATAGTCATTTTACCATATATAGGG
1 AAAAATAGTCATTTTACCACGTA-AGGG
* *
124242167 CAAAACAGTCATTT
1 AAAAATAGTCATTT
124242181 AATTAATAAG
Statistics
Matches: 152, Mismatches: 24, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
27 135 0.89
28 17 0.11
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAAATAGTCATTTTACCACGTAAGGG
Found at i:124242083 original size:81 final size:82
Alignment explanation
Indices: 124241978--124242180 Score: 234
Period size: 81 Copynumber: 2.5 Consensus size: 82
124241968 TAAAACGAAA
* * * *
124241978 AAAATAGTCATTTTACC-TCATAAGGGAAAAATAGTT-GTTTTACCTCGTAAGGGAAAAACAATT
1 AAAACAGTCATTTTACCATCATAAGGGAAAAATA-TTCATTTTACCACGTAAGGGAAAAACAATC
* *
124242041 GTTTTACCACGTAAGGGC
65 ATTTTACCACATAAGGGC
* * * *
124242059 ATAACAGTCATTTTACCAT-GTAAGGGAAAAATATTCATTTTACCACGTAAGGGCAAAACAGTCA
1 AAAACAGTCATTTTACCATCATAAGGGAAAAATATTCATTTTACCACGTAAGGGAAAAACAATCA
124242123 TTTTACCACATAAGGGC
66 TTTTACCACATAAGGGC
* * * *
124242140 AAAATAGTCATTTTACCAT-ATATAGGGCAAAACAGTCATTT
1 AAAACAGTCATTTTACCATCATA-AGGGAAAAATATTCATTT
124242181 AATTAATAAG
Statistics
Matches: 103, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
80 2 0.02
81 85 0.83
82 16 0.16
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (82 bp):
AAAACAGTCATTTTACCATCATAAGGGAAAAATATTCATTTTACCACGTAAGGGAAAAACAATCA
TTTTACCACATAAGGGC
Found at i:124242100 original size:54 final size:54
Alignment explanation
Indices: 124241977--124242180 Score: 230
Period size: 54 Copynumber: 3.8 Consensus size: 54
124241967 ATAAAACGAA
* * * **
124241977 AAAAATAGTCATTTTACCTCATAAGGGAAAAATAGTTGTTTTACC-TCGTAAGGG
1 AAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCAT-GTAAGGG
* * ** * *
124242031 AAAAACAATTGTTTTACCACGTAAGGGCATAACAGTCATTTTACCATGTAAGGG
1 AAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCATGTAAGGG
* * **
124242085 AAAAATATTCATTTTACCACGTAAGGGCAAAACAGTCATTTTACCACATAAGGG
1 AAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCATGTAAGGG
* *
124242139 CAAAATAGTCATTTTACCATATATAGGGCAAAACAGTCATTT
1 AAAAATAGTCATTTTACCACATA-AGGGCAAAACAGTCATTT
124242181 AATTAATAAG
Statistics
Matches: 126, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
54 107 0.85
55 19 0.15
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (54 bp):
AAAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCATGTAAGGG
Found at i:124242305 original size:13 final size:13
Alignment explanation
Indices: 124242283--124242314 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
124242273 AATGGCCCAA
124242283 GGCCCATAATGCG
1 GGCCCATAATGCG
*
124242296 GGCCCCTAATGCG
1 GGCCCATAATGCG
124242309 GGCCCA
1 GGCCCA
124242315 CATGCTCGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.38, G:0.31, T:0.12
Consensus pattern (13 bp):
GGCCCATAATGCG
Found at i:124251055 original size:25 final size:25
Alignment explanation
Indices: 124251027--124251105 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 25
124251017 ATGCAAAACA
124251027 TATAGTGAATC-CGCACACTTAGTGC
1 TATA-TGAATCTCGCACACTTAGTGC
*
124251052 TATATGTATTCACTCGCACACTTAGTGC
1 TATATG-AAT--CTCGCACACTTAGTGC
* *
124251080 -ATAATCAAACTCGCACACTTAGTGC
1 TAT-ATGAATCTCGCACACTTAGTGC
124251105 T
1 T
124251106 GTACAATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
24 2 0.05
25 22 0.50
27 4 0.09
28 16 0.36
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (25 bp):
TATATGAATCTCGCACACTTAGTGC
Found at i:124253083 original size:40 final size:40
Alignment explanation
Indices: 124253005--124253228 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
124252995 ACCCAAGTAT
* *
124253005 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
124253044 CTTTGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
124253084 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
124253124 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * * * *
124253167 CTTTGAGACTTAGCCCGGATATAGTAACTTGCACCAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
124253207 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
124253229 CATCCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 11 0.07
40 113 0.71
41 1 0.01
43 34 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:124253206 original size:83 final size:80
Alignment explanation
Indices: 124253005--124253228 Score: 272
Period size: 83 Copynumber: 2.8 Consensus size: 80
124252995 ACCCAAGTAT
* * * * * *
124253005 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGT
1 CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
124253069 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * *
124253084 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
124253148 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
124253167 CTTTGAGACTTAGCCCGGATATAGTAACTTGCACCAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
124253229 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
83 64 0.51
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:124262603 original size:47 final size:45
Alignment explanation
Indices: 124262496--124262620 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 45
124262486 GATGTGTGCT
** * *
124262496 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACAAGACGAGAGCA
* * *
124262542 AGTGTAAAACCATGTTTGGGACATGGCATCGGCATTAAGACGAGAGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-CAAGACGAGAGCA
*
124262590 ATTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
124262621 CTCGAGATAT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
46 16 0.24
47 28 0.42
48 22 0.33
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAAGACGAGAGCA
Found at i:124262653 original size:48 final size:48
Alignment explanation
Indices: 124262493--124262667 Score: 180
Period size: 48 Copynumber: 3.7 Consensus size: 48
124262483 ATGGATGTGT
* *
124262493 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTAT-GAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATCGAGA
* * * * *
124262539 GCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCATTAAGA-CGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCAATATCGAGA
* * *
124262587 GCAATTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATCCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTC-A-ATATCGAGA
* *
124262635 GCTAGTGTAAGACCTGTCTAGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCG
124262668 ACTTGACACG
Statistics
Matches: 103, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
46 20 0.19
47 27 0.26
48 48 0.47
49 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAATATCGAGA
Found at i:124262748 original size:49 final size:49
Alignment explanation
Indices: 124262684--124262811 Score: 161
Period size: 49 Copynumber: 2.6 Consensus size: 49
124262674 CACGTGTCAG
* *
124262684 TGTAAGACCTATTTGGGACATGGCATCGACAC-CGATAGATGAAAGCCAA
1 TGTAAGACCTATTTGGGACATGGCATCGAC-CTCGATAAATAAAAGCCAA
* * * *
124262733 TGTAAGACCCATTTGGGACATGACATC-AGCCTCGATAAATAAAAGTCAG
1 TGTAAGACCTATTTGGGACATGGCATCGA-CCTCGATAAATAAAAGCCAA
*
124262782 TGTAAGACCTGTTTGGGACATGGCATCGAC
1 TGTAAGACCTATTTGGGACATGGCATCGAC
124262812 TTAGATGTGT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 64 0.96
50 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTATTTGGGACATGGCATCGACCTCGATAAATAAAAGCCAA
Found at i:124264958 original size:41 final size:42
Alignment explanation
Indices: 124264820--124264989 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 42
124264810 CATAGGATTT
* * *
124264820 TCGATATGTG-TTCTTGAGTAAGACCATGTTTAGGACATTGGCA
1 TCGATATGTGATTC--GTGTAAGACCATATCTAGGACATTGGCA
* *
124264863 TTGATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCA
1 TCGATATGTGATT-CGTGTAAGACCATATCTAGGACATTGGCA
* * *
124264906 TCG-TATTTGATTCGTGTAAGACC-TATCTGGGACAGTGGCA
1 TCGATATGTGATTCGTGTAAGACCATATCTAGGACATTGGCA
* ** * *
124264946 TCGATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGA-TTCGTGTAAGACCATATCTAGGACATTGGCA
124264989 T
1 T
124264990 TGTATGATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
40 17 0.16
41 17 0.16
42 20 0.19
43 51 0.47
44 2 0.02
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCATATCTAGGACATTGGCA
Found at i:124267056 original size:12 final size:12
Alignment explanation
Indices: 124267039--124267063 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124267029 AAGAGATATC
124267039 AGATTTTTCTGA
1 AGATTTTTCTGA
124267051 AGATTTTTCTGA
1 AGATTTTTCTGA
124267063 A
1 A
124267064 TACGTGATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (12 bp):
AGATTTTTCTGA
Found at i:124283416 original size:28 final size:27
Alignment explanation
Indices: 124283353--124283422 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
124283343 ATAGTGAGTC
124283353 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
124283380 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
124283408 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
124283423 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:124291232 original size:28 final size:27
Alignment explanation
Indices: 124291169--124291238 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
124291159 ATAGTGAGTC
124291169 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
124291196 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
124291224 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
124291239 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:124300903 original size:40 final size:40
Alignment explanation
Indices: 124300830--124301011 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
124300820 ATACCTGGGC
* * * *
124300830 TAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGT
124300870 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
* *
124300910 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
*
124300950 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
*
124300990 TAAGACCCGAAGGCAATTGTGC
1 TAAGACCCGAAGGCATTTGTGC
124301012 TTGTGGTTAT
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 129 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
Found at i:124300968 original size:80 final size:80
Alignment explanation
Indices: 124300820--124301031 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
124300810 CAATTGAATG
* * * * *
124300820 ATACCTGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
124300884 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
124300900 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
124300965 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
124300980 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
124301032 ATTCCAAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 6 0.05
80 111 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:124304304 original size:29 final size:29
Alignment explanation
Indices: 124304270--124304372 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
124304260 TACTCGATTT
* * *
124304270 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
124304299 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
124304328 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
124304357 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
124304373 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:124305556 original size:18 final size:17
Alignment explanation
Indices: 124305531--124305584 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
124305521 GAATGAACAC
124305531 TTTTTTTTTTCTTTTCT
1 TTTTTTTTTTCTTTTCT
* *
124305548 TTGTTTTTTTCATATTCT
1 TTTTTTTTTTC-TTTTCT
* *
124305566 CTTTTTTTTTCATTTCT
1 TTTTTTTTTTCTTTTCT
124305583 TT
1 TT
124305585 ATTCTTCCTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTTTTTTCTTTTCT
Found at i:124305568 original size:20 final size:16
Alignment explanation
Indices: 124305530--124305584 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 16
124305520 AGAATGAACA
124305530 CTTTTTTTTTTCTTTT
1 CTTTTTTTTTTCTTTT
*
124305546 CTTTGTTTTTTTCATATT
1 CTTT-TTTTTTTC-TTTT
*
124305564 CTCTTTTTTTTTCATTT
1 CT-TTTTTTTTTCTTTT
124305581 CTTT
1 CTTT
124305585 ATTCTTCCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 6 0.18
17 12 0.36
18 13 0.39
19 2 0.06
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (16 bp):
CTTTTTTTTTTCTTTT
Found at i:124312170 original size:29 final size:30
Alignment explanation
Indices: 124312130--124312203 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
124312120 CATTTAAGCC
* * *
124312130 CGCACACATAGTGCCATACCCTTCGAGC-T
1 CGCACACTTAGTGCCATACACTTCCAGCAT
* *
124312159 CGCACACTTAGTGCCATATATTTCCAGCAT
1 CGCACACTTAGTGCCATACACTTCCAGCAT
124312189 -GCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
124312204 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 38 0.97
30 1 0.03
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (30 bp):
CGCACACTTAGTGCCATACACTTCCAGCAT
Found at i:124317602 original size:40 final size:40
Alignment explanation
Indices: 124317557--124317724 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
124317547 CGGAATATAA
124317557 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
124317597 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
124317637 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
124317677 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
124317717 CCGGATAT
1 CCGGATAT
124317725 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:124317707 original size:80 final size:80
Alignment explanation
Indices: 124317573--124317722 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
124317563 ATAACCACGT
* *
124317573 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
124317638 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
124317653 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
124317716 CCCGGAT
64 CCCGGAT
124317723 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:124326440 original size:37 final size:37
Alignment explanation
Indices: 124326343--124326428 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
124326333 TTATTACGAA
*
124326343 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
124326380 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
124326417 GTCTTACCCGGA
1 GTCTTACCCGGA
124326429 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:124326544 original size:48 final size:48
Alignment explanation
Indices: 124326473--124327271 Score: 1296
Period size: 48 Copynumber: 16.2 Consensus size: 48
124326463 TGTTACAACA
*
124326473 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
124326521 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124326569 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124326617 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124326665 TTCACATTAGCCATTCGGCTTTACCACATATAC--ATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124326711 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT----C----A---CACATGTAT
*
124326770 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124326818 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
124326866 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
124326914 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCACACATGTATTTCACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATAC--AT-----AT-CA---CACATGTAT
*
124326973 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
124327021 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124327069 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124327117 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
124327165 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
* *
124327213 TTCACATTAGCTATTCGGCTTTACCACATATACATATCGCACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124327261 TTCACATTAGC
1 TTCACATTAGC
124327272 ACACATGTAT
Statistics
Matches: 710, Mismatches: 17, Indels: 48
0.92 0.02 0.06
Matches are distributed among these distances:
46 46 0.06
48 565 0.80
50 2 0.00
51 2 0.00
52 3 0.00
55 2 0.00
56 2 0.00
57 2 0.00
59 86 0.12
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:124326585 original size:96 final size:96
Alignment explanation
Indices: 124326473--124327850 Score: 1808
Period size: 96 Copynumber: 14.3 Consensus size: 96
124326463 TGTTACAACA
*
124326473 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124326538 GCTTTACCACATATACATAACACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
124326569 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124326634 GCTTTACCACATATACATATCACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
124326665 TTCACATTAGCCATTCGGCTTTACCACATATAC--ATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124326728 GCTTTACCACATATACATATCACACATGTATTTCACATGTAT
66 GCTTTACCACATATAC--AT-A-AC----A---CACATGTAT
*
124326770 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124326835 GCTTTACCACATATACATATCACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
*
124326866 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124326931 GCTTTACCACATATACTTATCACACATGTATTTCACATGTAT
66 GCTTTACCACATATAC--AT-A-AC----A---CACATGTAT
*
124326973 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124327038 GCTTTACCACATATACATAACACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
124327069 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124327134 GCTTTACCACATATACATATCACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
* *
124327165 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCTATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
* *
124327230 GCTTTACCACATATACATATCGCACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
* ** ** **
124327261 TTCACATTAGCACACAT-GTATTT--CACAT-TAGCCAT-TC-GGC-T-T-TACCACATATA--C
1 TTCACATTAGC-CA-TTCGGCTTTACCACATATA--CATATCACACATGTATTTCACAT-TAGCC
* * ***
124327315 ATATC-AC---A-CATCTATTTCACATGTATTTCACAT-TA-
61 AT-TCGGCTTTACCA-C-ATAT-ACA--TAACACACATGTAT
* * * * ** * * ** * * ** *
124327350 -GC-CATTCGACTTTACCAC-ATA-TACATAT-C--A-CACATGTATTTCACAT--TAGCCATTC
1 TTCACATTAGCCATT-CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTC
124327405 GGCTTTACCACATATACATAACACACATGTAT
65 GGCTTTACCACATATACATAACACACATGTAT
* *
124327437 TTGACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCATATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124327502 GCTTTACCACATATACATAACACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
124327533 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
* * *
124327598 GCTTAAACACATATACATATCACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
*
124327629 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124327694 GCTTTACCACATATACATATCACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
*
124327725 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124327790 GCTTTACCACATATACATATCACACATGTAT
66 GCTTTACCACATATACATAACACACATGTAT
*
124327821 TTCACATTAGCCATTCGGCTTCACCACATA
1 TTCACATTAGCCATTCGGCTTTACCACATA
124327851 ATTACACTTT
Statistics
Matches: 1143, Mismatches: 76, Indels: 126
0.85 0.06 0.09
Matches are distributed among these distances:
83 1 0.00
84 2 0.00
85 12 0.01
86 11 0.01
87 17 0.01
88 10 0.01
89 15 0.01
90 13 0.01
91 17 0.01
92 3 0.00
93 2 0.00
94 59 0.05
95 6 0.01
96 774 0.68
97 7 0.01
98 4 0.00
99 3 0.00
100 1 0.00
102 1 0.00
103 3 0.00
104 3 0.00
105 45 0.04
107 134 0.12
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
GCTTTACCACATATACATAACACACATGTAT
Found at i:124326642 original size:144 final size:144
Alignment explanation
Indices: 124326473--124327850 Score: 2057
Period size: 144 Copynumber: 9.5 Consensus size: 144
124326463 TGTTACAACA
*
124326473 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124326538 GCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
124326603 TATCACACATGTAT
131 TAACACACATGTAT
124326617 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124326682 GCTTTACCACATATAC--ATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC-
124326745 TATCACACATGTATTTCACATGTAT
130 -AT-A-AC----A---CACATGTAT
*
124326770 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124326835 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
124326900 TAACACACATGTAT
131 TAACACACATGTAT
*
124326914 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCACACATGTATTTCACATGTATTTCACA
1 TTCACATTAGCCATTCGGCTTTACCACATATAC--AT-----AT-CA---CACATGTATTTCACA
*
124326979 TTAGCCATTCGACTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTA
55 TTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTA
124327044 CCACATATACATAACACACATGTAT
120 CCACATATACATAACACACATGTAT
124327069 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
124327134 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
124327199 TAACACACATGTAT
131 TAACACACATGTAT
* * *
124327213 TTCACATTAGCTATTCGGCTTTACCACATATACATATCGCACATGTATTTCACATTAGCACACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGC-CA-TT
** ** **
124327278 -GTATTT--CACAT-TAGCCAT-TC-GGC-T-T-TACCACATATA--CATAT---C---A-CAC-
64 CGGCTTTACCACATATA--CATATCACACATGTATTTCACAT-TAGCCAT-TCGGCTTTACCACA
***
124327324 -AT-C-TATTTCACATGTAT
125 TATACATAACACACATGTAT
*
124327341 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
* *
124327406 GCTTTACCACATATACATAACACACATGTATTTGACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
124327471 TATCACACATGTAT
131 TAACACACATGTAT
* *
124327485 TTCATATTAGCCATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
* *
124327550 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTAAACACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
124327615 TATCACACATGTAT
131 TAACACACATGTAT
*
124327629 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124327694 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGACTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
124327759 TATCACACATGTAT
131 TAACACACATGTAT
124327773 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
*
124327838 GCTTCACCACATA
66 GCTTTACCACATA
124327851 ATTACACTTT
Statistics
Matches: 1134, Mismatches: 48, Indels: 104
0.88 0.04 0.08
Matches are distributed among these distances:
126 1 0.00
127 6 0.01
128 70 0.06
129 7 0.01
130 5 0.00
131 1 0.00
132 6 0.01
133 7 0.01
134 3 0.00
136 2 0.00
138 3 0.00
139 8 0.01
140 6 0.01
141 1 0.00
142 50 0.04
143 8 0.01
144 652 0.57
145 7 0.01
146 4 0.00
147 2 0.00
148 2 0.00
150 1 0.00
151 4 0.00
152 2 0.00
153 93 0.08
155 183 0.16
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACA
TAACACACATGTAT
Found at i:124326766 original size:11 final size:11
Alignment explanation
Indices: 124326750--124326776 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
124326740 ATACATATCA
124326750 CACATGTATTT
1 CACATGTATTT
124326761 CACATGTATTT
1 CACATGTATTT
124326772 CACAT
1 CACAT
124326777 TAGCCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (11 bp):
CACATGTATTT
Found at i:124326969 original size:11 final size:11
Alignment explanation
Indices: 124326953--124326979 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
124326943 ATACTTATCA
124326953 CACATGTATTT
1 CACATGTATTT
124326964 CACATGTATTT
1 CACATGTATTT
124326975 CACAT
1 CACAT
124326980 TAGCCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (11 bp):
CACATGTATTT
Found at i:124327277 original size:21 final size:21
Alignment explanation
Indices: 124327252--124327292 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
124327242 ATACATATCG
124327252 CACATGTATTTCACATTAGCA
1 CACATGTATTTCACATTAGCA
124327273 CACATGTATTTCACATTAGC
1 CACATGTATTTCACATTAGC
124327293 CATTCGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (21 bp):
CACATGTATTTCACATTAGCA
Found at i:124327280 original size:69 final size:69
Alignment explanation
Indices: 124327202--124327336 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
124327192 ATATACATAA
* * *
124327202 CACACATGTATTTCACATTAGCTATTCGGCTTTACCACATATACATATCGCACATGTATTTCACA
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATCTATTTCACA
124327267 TTAG
66 TTAG
124327271 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATCTATTTCACA
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATCTATTTCACA
124327336 T
66 T
124327337 GTATTTCACA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (69 bp):
CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATCTATTTCACA
TTAG
Found at i:124327323 original size:48 final size:48
Alignment explanation
Indices: 124327271--124327850 Score: 971
Period size: 48 Copynumber: 11.9 Consensus size: 48
124327261 TTCACATTAG
124327271 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC--AT-----AT
*
124327326 CTATTTCACATGTATTTCACATTAGCCATTCGACTTTACCACATATACATAT
1 C-A---CACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
124327378 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAA
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
124327426 CACACATGTATTTGACATTAGCCATTCGGCTTTACCACATATACATAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
* *
124327474 CACACATGTATTTCATATTAGCCATTCGGCTTTACCACATATACATAA
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
124327522 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
* *
124327570 CACACATGTATTTCACATTAGCCATTCGGCTTAAACACATATACATAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
124327618 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAA
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
124327666 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
124327714 CACACATGTATTTCACATTAGCCATTCGACTTTACCACATATACATAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
124327762 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
124327810 CACACATGTATTTCACATTAGCCATTCGGCTTCACCACATA
1 CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATA
124327851 ATTACACTTT
Statistics
Matches: 502, Mismatches: 19, Indels: 15
0.94 0.04 0.03
Matches are distributed among these distances:
48 453 0.90
51 1 0.00
52 3 0.01
55 1 0.00
56 1 0.00
57 2 0.00
59 41 0.08
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (48 bp):
CACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
Found at i:124330249 original size:48 final size:48
Alignment explanation
Indices: 124330166--124330433 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
124330156 ACAACATTCT
* * * * *
124330166 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * * *
124330214 CATTCGCCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
124330262 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
124330310 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
124330358 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
*
124330406 CATTAGCCATTCGACTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
124330434 TACACTTTCA
Statistics
Matches: 206, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 206 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:124330477 original size:47 final size:47
Alignment explanation
Indices: 124330426--124330533 Score: 216
Period size: 47 Copynumber: 2.3 Consensus size: 47
124330416 TCGACTTTAC
124330426 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
124330473 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
124330520 CACATATATACACT
1 CACATATATACACT
124330534 ACGAGCTGTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.31
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:124330493 original size:96 final size:95
Alignment explanation
Indices: 124330161--124330480 Score: 311
Period size: 96 Copynumber: 3.3 Consensus size: 95
124330151 AGGTTACAAC
* * * * * * * * * * *
124330161 ATTCTCATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCACATTCGCCATTC
1 ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
* * * * *
124330226 GGCTTTACGACATATACACATCTCATATAT
66 GACTTTACCACATATACACATCACACATGT
* * * *
124330256 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 A-TTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATT
* *
124330321 CGGCTTTACCACATATACATATCACACATGT
65 CGACTTTACCACATATACACATCACACATGT
* * * *
124330352 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 A-TTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATT
* **
124330417 CGACTTTACCACATATATACACTTTCACAT-T
65 CGACTTTACCACATATACACA-TCACACATGT
* *
124330448 CA-TCACATCGGCCATTAGGCCTTATCACATATA
1 -ATTCACATCAGCCATTAGGCCTTACCACATATA
124330481 TACACTTTCA
Statistics
Matches: 200, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
95 27 0.14
96 166 0.83
97 7 0.04
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (95 bp):
ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
GACTTTACCACATATACACATCACACATGT
Found at i:124330493 original size:144 final size:143
Alignment explanation
Indices: 124330161--124330480 Score: 356
Period size: 144 Copynumber: 2.2 Consensus size: 143
124330151 AGGTTACAAC
* * * * * * * * * * *
124330161 ATTCTCATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCACATTCGCCATTC
1 ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
* * * *
124330226 GGCTTTACGACATATACACATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
66 GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGACTTTACCACATATAC
*
124330291 ATATCACACATGT
131 ACATCACACATGT
* * * *
124330304 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 A-TTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATT
* *
124330369 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGACTTTACCACATATA
65 CGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGACTTTACCACATATA
* **
124330434 TACACTTTCACAT-T
130 CACA-TCACACATGT
* *
124330448 CA-TCACATCGGCCATTAGGCCTTATCACATATA
1 -ATTCACATCAGCCATTAGGCCTTACCACATATA
124330481 TACACTTTCA
Statistics
Matches: 152, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
143 27 0.18
144 118 0.78
145 7 0.05
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (143 bp):
ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGACTTTACCACATATAC
ACATCACACATGT
Found at i:124333044 original size:13 final size:13
Alignment explanation
Indices: 124333026--124333050 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
124333016 CACTAAATTT
124333026 TCATGGATTCAAA
1 TCATGGATTCAAA
124333039 TCATGGATTCAA
1 TCATGGATTCAA
124333051 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:124335297 original size:39 final size:40
Alignment explanation
Indices: 124335194--124335375 Score: 307
Period size: 39 Copynumber: 4.6 Consensus size: 40
124335184 CCAGCATGAT
* * * *
124335194 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
124335234 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
124335274 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
124335313 TGCTC-TCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
124335352 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
124335376 TAACCACAAG
Statistics
Matches: 136, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
38 2 0.01
39 79 0.58
40 55 0.40
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:124335399 original size:39 final size:39
Alignment explanation
Indices: 124335220--124335492 Score: 243
Period size: 40 Copynumber: 6.9 Consensus size: 39
124335210 GCCCGGATGC
*
124335220 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATAA
*
124335260 ATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATAA
*
124335299 ATCACTAGCACGAATG-CTCTCGGAACTTAGTCCGGATAC
1 ATCACTAGCACGAATGCCT-TCGGAACTTAGTCCGGATAA
124335338 ATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATATA
1 ATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATA-A
* * ** ** *
124335378 ACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGGTATA
1 ATCACTAGCACGAA-TGCCTTCGGAACTTAGTCCGGATA-A
* ** *
124335418 A-CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 ATC-ACT-AGCACGAATGCCTTCGGAACTTAGTCCGGATA-A
* ** * *
124335458 TTCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 ATCACTAGCACGAATGCCTTCGGAACTTAGTCCGG
124335493 GTATCATTCA
Statistics
Matches: 208, Mismatches: 13, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 87 0.42
40 111 0.53
41 6 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
ATCACTAGCACGAATGCCTTCGGAACTTAGTCCGGATAA
Found at i:124337462 original size:37 final size:37
Alignment explanation
Indices: 124337412--124337497 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
124337402 TTATTACGAA
*
124337412 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
124337449 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
124337486 GTCTTACCCGGA
1 GTCTTACCCGGA
124337498 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:124337613 original size:48 final size:48
Alignment explanation
Indices: 124337542--124337862 Score: 492
Period size: 48 Copynumber: 6.6 Consensus size: 48
124337532 TCTTACAACA
*
124337542 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124337590 TTCACATTAGCCATTCGGCTTTA-C-CATATACATA-CACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
**
124337635 TTCACATTAGCCATTCGGCTTTACCACATACATATCACACATGTATTTCACATGTAT
1 TTCACATTAGCCATTCGGCTTTA-C-C--ACATAT---ACA--TATCACACATGTAT
124337692 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124337740 TTCACATTAGCCATTCGGCTTTACCACATATACATAT--CACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124337786 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
124337834 TTCACATTAGCCATTCGGC-TTACCACATA
1 TTCACATTAGCCATTCGGCTTTACCACATA
124337863 ATTACACTTT
Statistics
Matches: 254, Mismatches: 5, Indels: 29
0.88 0.02 0.10
Matches are distributed among these distances:
45 33 0.13
46 56 0.22
47 11 0.04
48 101 0.40
50 3 0.01
51 5 0.02
53 6 0.02
54 3 0.01
55 1 0.00
56 3 0.01
57 32 0.13
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:124337686 original size:11 final size:11
Alignment explanation
Indices: 124337672--124337698 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
124337662 ATACATATCA
124337672 CACATGTATTT
1 CACATGTATTT
124337683 CACATGTATTT
1 CACATGTATTT
124337694 CACAT
1 CACAT
124337699 TAGCCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (11 bp):
CACATGTATTT
Found at i:124337795 original size:94 final size:93
Alignment explanation
Indices: 124337682--124337862 Score: 353
Period size: 94 Copynumber: 1.9 Consensus size: 93
124337672 CACATGTATT
124337682 TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
1 TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
124337747 TAGCCATTCGGCTTTACCACATATACATA
66 TAGCCATTCGGC-TTACCACATATACATA
124337776 TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
1 TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
124337841 TAGCCATTCGGCTTACCACATA
66 TAGCCATTCGGCTTACCACATA
124337863 ATTACACTTT
Statistics
Matches: 87, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
93 10 0.11
94 77 0.89
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (93 bp):
TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
TAGCCATTCGGCTTACCACATATACATA
Found at i:124337877 original size:48 final size:46
Alignment explanation
Indices: 124337679--124337911 Score: 303
Period size: 48 Copynumber: 5.0 Consensus size: 46
124337669 TCACACATGT
124337679 ATTTCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 ATTTCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
124337725 ATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 AT-T-TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
124337773 ATATCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 ATTTCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
124337819 ATATCACACATGTATTTCACATTAGCCATTCGGC-TTACCACATAATTAC
1 AT-T-TCACATGTATTTCACATTAGCCATTCGGCTTTACCACAT-A-TAC
* * * *
124337868 ACTTTCACAT-TCA--TCACATTGGCCATTAGGCCTTATCACATATA
1 A-TTTCACATGT-ATTTCACATTAGCCATTCGGCTTTACCACATATA
124337912 TACACTACGA
Statistics
Matches: 169, Mismatches: 9, Indels: 19
0.86 0.05 0.10
Matches are distributed among these distances:
45 2 0.01
46 63 0.37
47 19 0.11
48 79 0.47
49 5 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (46 bp):
ATTTCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATAC
Found at i:124337885 original size:94 final size:93
Alignment explanation
Indices: 124337682--124337911 Score: 340
Period size: 94 Copynumber: 2.4 Consensus size: 93
124337672 CACATGTATT
124337682 TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
1 TCACATGTA-TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
124337747 TAGCCATTCGGCTTTACCACATATACATA
65 TAGCCATTCGGCTTTACCACATATACATA
124337776 TCACATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
1 TCACATGTA-TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACAT
*
124337841 TAGCCATTCGGC-TTACCACATAATTACACTT
65 TAGCCATTCGGCTTTACCACAT-A-TACA-TA
* * * *
124337872 TCACAT-TCA-TCACATTGGCCATTAGGCCTTATCACATATA
1 TCACATGT-ATTCACATTAGCCATTCGGCTTTACCACATATA
124337912 TACACTACGA
Statistics
Matches: 127, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
93 9 0.07
94 105 0.83
95 5 0.04
96 8 0.06
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (93 bp):
TCACATGTATTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATT
AGCCATTCGGCTTTACCACATATACATA
Found at i:124339387 original size:13 final size:13
Alignment explanation
Indices: 124339369--124339393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
124339359 CACTAAATTT
124339369 TCATGGATTCAAA
1 TCATGGATTCAAA
124339382 TCATGGATTCAA
1 TCATGGATTCAA
124339394 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:124344783 original size:40 final size:41
Alignment explanation
Indices: 124344735--124344956 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 41
124344725 TCTACTCGTT
* *
124344735 CAAATGCCTTTGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTTCGGATCTTAGCCCGGATT-TAGTAACTCGCA
* * *
124344775 CAGATGCCTTTGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
124344815 CAAATGCC-TTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
124344855 CAAATGCC-TTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
124344895 CGAATGCC-TTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
124344936 CAAA-GCC-TTCAGGA-CTTAGCC
1 CAAATGCCTTTC-GGATCTTAGCC
124344957 TGGACATCAT
Statistics
Matches: 165, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 5 0.03
40 148 0.90
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:124348830 original size:86 final size:90
Alignment explanation
Indices: 124348618--124348929 Score: 276
Period size: 96 Copynumber: 3.4 Consensus size: 90
124348608 CATACATCGG
* * * * *
124348618 TGCCGATACCATGTCCTAGACATGGTCTTACATTGACACAT-ATAACAATGTCGATGCCATATTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCAT-A-AA-GTCGA-GCC--ATCC
* * * * * **
124348682 CAAACATGGTCTTACACTGGCTCGCATATTGA
59 CAGACATGGTCTTACACAGACACACATATCAA
* *
124348714 GGCTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGT-G-G-C-TCCCAGACAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGTCGAGCCATCCCAGACAT
124348775 GGTCTTACACA-AGCACACATATCAA
66 GGTCTTACACAGA-CACACATATCAA
* * *
124348800 TGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGT---CGA-GCCA--TCCC
* *
124348865 AGACATGGTCTTACACTGACACACATATTAA
60 AGACATGGTCTTACACAGACACACATATCAA
*
124348896 TGCCGATGCCATGTCCCAGACATGTTCTTACACT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
124348930 AGCAAACATA
Statistics
Matches: 180, Mismatches: 23, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
86 69 0.38
89 1 0.01
90 2 0.01
92 2 0.01
93 3 0.02
94 2 0.01
95 2 0.01
96 98 0.54
97 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (90 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGTCGAGCCATCCCAGACAT
GGTCTTACACAGACACACATATCAA
Found at i:124348875 original size:134 final size:133
Alignment explanation
Indices: 124348635--124348884 Score: 367
Period size: 134 Copynumber: 1.9 Consensus size: 133
124348625 ACCATGTCCT
** * *
124348635 AGACATGGTCTTACATTGACACATATAACAATGTCGATGCCATATTCCAAACATGGTCTTACACT
1 AGACATGGTCTTACAAAGACACATAT-ACAATGCCGATGCCATATCCCAAACATGGTCTTACACT
* *
124348700 GGCTCGCATATTGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGTGGC
65 GGCTCGCATAATGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGTGGC
124348765 TCCC
130 TCCC
* * *
124348769 AGACATGGTCTTACACAAGCACACATAT-CAATGCCGATGTCATGTCCCAGACATGGTCTTACAC
1 AGACATGGTCTTACA-AAG-ACACATATACAATGCCGATGCCATATCCCAAACATGGTCTTACAC
* *
124348833 TGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
64 TGGCTCGCATAATGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
124348885 ACACATATTA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
134 94 0.91
135 1 0.01
136 8 0.08
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (133 bp):
AGACATGGTCTTACAAAGACACATATACAATGCCGATGCCATATCCCAAACATGGTCTTACACTG
GCTCGCATAATGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAAAGTGGCT
CCC
Found at i:124348939 original size:48 final size:48
Alignment explanation
Indices: 124348765--124348940 Score: 230
Period size: 48 Copynumber: 3.7 Consensus size: 48
124348755 ATAAAGTGGC
* * *
124348765 TCCCAGACATGGTCTTACACAAGCACACATATCAATGCCGATGTCATG
1 TCCCAGACATGGTCTTACACTAGCACACATATTAATGCCGATGCCATG
* * * * *
124348813 TCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTAGCACACATATTAAT-GCCGATGCCATG
124348861 TCCCAGACATGGTCTTACACT-GACACACATATTAATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTAG-CACACATATTAATGCCGATGCCATG
* *
124348909 TCCCAGACATGTTCTTACACTAGCAAACATAT
1 TCCCAGACATGGTCTTACACTAGCACACATAT
124348941 CAACCAAATG
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.02
48 106 0.96
49 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (48 bp):
TCCCAGACATGGTCTTACACTAGCACACATATTAATGCCGATGCCATG
Found at i:124352838 original size:20 final size:20
Alignment explanation
Indices: 124352809--124352854 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
124352799 AGCACATGTA
* *
124352809 TTCATAAAATTTCAAAATTT
1 TTCATTAAATTTCAAAACTT
* *
124352829 TTCATTAAATTTTACAACTT
1 TTCATTAAATTTCAAAACTT
124352849 TTCATT
1 TTCATT
124352855 TTAGTCCCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (20 bp):
TTCATTAAATTTCAAAACTT
Found at i:124354601 original size:27 final size:27
Alignment explanation
Indices: 124354571--124354664 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 27
124354561 AAAATTTCCA
*
124354571 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
*
124354598 AAATGCCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
124354627 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
124354654 AAATACCCTTG
1 AAATACCCTTG
124354665 GTTTGTAGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
27 29 0.52
28 7 0.12
29 20 0.36
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:124356232 original size:39 final size:39
Alignment explanation
Indices: 124356151--124356313 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
124356141 TATGGTAACC
** *
124356151 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
124356191 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
124356230 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
124356269 CGCACAATTGCCTTCGTGCTTAGCTCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
124356308 CGCACA
1 CGCACA
124356314 TTCATTCACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:124358868 original size:16 final size:16
Alignment explanation
Indices: 124358847--124358877 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
124358837 CAAATATGGG
*
124358847 CATGACATTTTGCATA
1 CATGACATGTTGCATA
124358863 CATGACATGTTGCAT
1 CATGACATGTTGCAT
124358878 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:124359208 original size:31 final size:31
Alignment explanation
Indices: 124359173--124359251 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
124359163 CGTTTACAAT
*
124359173 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
124359204 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
124359235 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
124359252 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:124361566 original size:27 final size:27
Alignment explanation
Indices: 124361504--124361639 Score: 71
Period size: 27 Copynumber: 5.0 Consensus size: 27
124361494 AATACTTTAG
* * **
124361504 TTTACCAAATTACCAAAATACCCTCAA
1 TTTACAAAATTTCCAAAATACCCTTGA
***
124361531 TTCGTAAAATTTCCAAAATACCCTTGA
1 TTTACAAAATTTCCAAAATACCCTTGA
124361558 TTTACAAAATTAT--AGAAATACCCTTGA
1 TTTACAAAATT-TCCA-AAATACCCTTGA
* ** * *
124361585 CTTT-CTAAAAATTATAGAAATACCATTGG
1 -TTTAC-AAAATTTCCA-AAATACCCTTGA
* **
124361614 TTTACAAAATTACTGAAATACCCTTG
1 TTTACAAAATTTCCAAAATACCCTTG
124361640 GTTTGTAGAT
Statistics
Matches: 84, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
26 1 0.01
27 52 0.62
28 18 0.21
29 13 0.15
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTTCCAAAATACCCTTGA
Found at i:124361603 original size:29 final size:27
Alignment explanation
Indices: 124361546--124361639 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 27
124361536 AAAATTTCCA
124361546 AAATACCCTTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
124361573 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
124361602 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
124361629 AAATACCCTTG
1 AAATACCCTTG
124361640 GTTTGTAGAT
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
27 31 0.53
28 7 0.12
29 21 0.36
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:124361720 original size:27 final size:27
Alignment explanation
Indices: 124361688--124361739 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
124361678 GACTAAAATA
124361688 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
124361715 CCCCTATAGGGTAAACTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
124361740 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:124362643 original size:24 final size:25
Alignment explanation
Indices: 124362567--124362636 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
124362557 AGGAAGTGCT
* * *
124362567 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
124362592 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
124362617 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
124362637 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:124362843 original size:42 final size:42
Alignment explanation
Indices: 124362784--124362875 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
124362774 TAGTCTCCCC
124362784 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
124362826 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
124362868 AAATGGGC
1 AAATGGGC
124362876 CTATGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:124362970 original size:31 final size:31
Alignment explanation
Indices: 124362899--124362973 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
124362889 CGTTTACAAT
*
124362899 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
124362930 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
124362961 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
124362974 TAGTAACTGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:124367952 original size:41 final size:40
Alignment explanation
Indices: 124367825--124367969 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
124367815 ACTCGCCAAG
* * *
124367825 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
124367865 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
124367905 GCCTTC-GGATCTTAGTCCGGATGTAGTCACTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
124367946 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
124367970 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:124371489 original size:29 final size:28
Alignment explanation
Indices: 124371455--124371557 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
124371445 TACTCAATCA
*
124371455 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
124371484 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
124371513 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
124371542 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
124371558 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:124382317 original size:40 final size:40
Alignment explanation
Indices: 124382272--124382438 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
124382262 CGGAATATAA
124382272 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
124382312 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
124382352 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
124382392 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
124382431 CCGGATAT
1 CCGGATAT
124382439 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:124382422 original size:80 final size:79
Alignment explanation
Indices: 124382288--124382438 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
124382278 ATAATCACGT
*
124382288 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
124382353 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
124382368 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
124382431 CCGGATAT
64 CCGGATAT
124382439 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:124383701 original size:56 final size:54
Alignment explanation
Indices: 124383628--124383740 Score: 140
Period size: 56 Copynumber: 2.1 Consensus size: 54
124383618 CCTCCCCCTT
124383628 TTTCCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTC
1 TTTCCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTCTTTTC
*** *
124383684 TTTCCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTTC
1 TTTCCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTCTTTTC
124383738 TTT
1 TTT
124383741 TTTTTTCTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
54 14 0.27
56 33 0.65
57 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (54 bp):
TTTCCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTCTTTTC
Found at i:124383743 original size:10 final size:10
Alignment explanation
Indices: 124383728--124383753 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
124383718 GGATGAACAT
124383728 TTTTTTTTTC
1 TTTTTTTTTC
124383738 TTTTTTTTTC
1 TTTTTTTTTC
124383748 TTTTTT
1 TTTTTT
124383754 CATACTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:124385519 original size:55 final size:53
Alignment explanation
Indices: 124385392--124385576 Score: 165
Period size: 55 Copynumber: 3.4 Consensus size: 53
124385382 CTTTCCATTG
** * * *
124385392 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCATCAATG
1 CCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTATGAACTAATCAATA
* * *
124385445 CCATGCCTTGGCATGGTCTTACACGGGA-CCTTTGCCTTATAGTAACTAATTAATA
1 CCATGTCTTGACATGGTCTTACACGGGATCC-TTGCCTTAT-G-AACTAATCAATA
* *** * * *
124385500 CCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTATAGAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTAT-GAACTAATCAATA
* * *
124385554 CCGTGCCTTGGCATGGTCTTACA
1 CCATGTCTTGACATGGTCTTACA
124385577 TGATATCCTA
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.30
54 30 0.28
55 42 0.39
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTATGAACTAATCAATA
Found at i:124385682 original size:47 final size:47
Alignment explanation
Indices: 124385565--124385686 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
124385555 CGTGCCTTGG
* ***
124385565 CATGGTCTTACATGATATCCTAAACTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
124385612 CATGGTCTTACATGGTATTCTTGTCTTACCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
124385659 CATGGCCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
124385687 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:124386383 original size:31 final size:30
Alignment explanation
Indices: 124386348--124386405 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
124386338 CTAACTCAAA
124386348 CTTTGGAAAAATTACAATTTTGCCCCTAAAC
1 CTTT-GAAAAATTACAATTTTGCCCCTAAAC
* * **
124386379 CTTTGCAGAATTATGATTTTGCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
124386406 GGCTCAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:124389056 original size:27 final size:28
Alignment explanation
Indices: 124389000--124389069 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
124388990 AAACTTGTAC
124389000 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
124389028 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
124389055 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
124389070 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:124389080 original size:27 final size:27
Alignment explanation
Indices: 124389000--124389081 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
124388990 AAACTTGTAC
* *
124389000 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
124389028 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
124389055 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
124389082 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:124393208 original size:123 final size:123
Alignment explanation
Indices: 124392988--124393209 Score: 311
Period size: 123 Copynumber: 1.8 Consensus size: 123
124392978 GAATTATGTG
** * * * *
124392988 AAATGAAATATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGGATGTCCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGG
* * **
124393053 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* *
124393111 AAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGG
1 AAATGAAATATGGATGTCCAATGATTATTGAT-TATGTGTGCATGAGAAATTGAATGATACCCGG
*
124393176 GCTAAG-CCCGAAGACAATTATGCTGGAAATTATA
65 GCTAAGTCCCGAAGACAATTATGCTAGAAATTATA
124393210 TCCGGGTTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 51 0.60
124 34 0.40
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTCCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:124393234 original size:40 final size:40
Alignment explanation
Indices: 124393168--124393318 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
124393158 AAATTGAATG
* * *
124393168 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
124393207 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
124393247 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
124393287 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
124393319 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:124393332 original size:40 final size:40
Alignment explanation
Indices: 124393205--124393334 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
124393195 ATGCTGGAAA
* * *
124393205 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
124393245 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
124393285 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
124393325 TTATATCCGG
1 TTATATCCGG
124393335 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:124401193 original size:123 final size:123
Alignment explanation
Indices: 124400973--124401194 Score: 311
Period size: 123 Copynumber: 1.8 Consensus size: 123
124400963 GAATTATGTG
** * * * *
124400973 AAATGAAATATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGGATGTCCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGG
* * **
124401038 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* *
124401096 AAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGG
1 AAATGAAATATGGATGTCCAATGATTATTGAT-TATGTGTGCATGAGAAATTGAATGATACCCGG
*
124401161 GCTAAG-CCCGAAGACAATTATGCTGGAAATTATA
65 GCTAAGTCCCGAAGACAATTATGCTAGAAATTATA
124401195 TCCGGGTTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 51 0.60
124 34 0.40
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTCCAATGATTATTGATTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:124401219 original size:40 final size:40
Alignment explanation
Indices: 124401153--124401303 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
124401143 AAATTGAATG
* * *
124401153 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
124401192 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
124401232 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
124401272 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
124401304 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:124401317 original size:40 final size:40
Alignment explanation
Indices: 124401190--124401319 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
124401180 ATGCTGGAAA
* * *
124401190 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
124401230 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
124401270 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
124401310 TTATATCCGG
1 TTATATCCGG
124401320 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:124408242 original size:27 final size:28
Alignment explanation
Indices: 124408186--124408255 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
124408176 AAACTTGTAC
124408186 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
124408214 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
124408241 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
124408256 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:124408266 original size:27 final size:27
Alignment explanation
Indices: 124408186--124408267 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
124408176 AAACTTGTAC
* *
124408186 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
124408214 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
124408241 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
124408268 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:124415098 original size:18 final size:18
Alignment explanation
Indices: 124415075--124415109 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
124415065 ATGTTGTGCC
124415075 ATGAGATTCATGCATGTG
1 ATGAGATTCATGCATGTG
124415093 ATGAGATTCATGCATGT
1 ATGAGATTCATGCATGT
124415110 TTTTGTTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (18 bp):
ATGAGATTCATGCATGTG
Found at i:124416235 original size:27 final size:28
Alignment explanation
Indices: 124416179--124416248 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
124416169 AAACTTGTAC
124416179 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
124416207 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
124416234 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
124416249 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:124416259 original size:27 final size:27
Alignment explanation
Indices: 124416179--124416260 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
124416169 AAACTTGTAC
* *
124416179 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
124416207 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
124416234 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
124416261 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Done.