Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 406 of 770
Found at i:124697890 original size:40 final size:40
Alignment explanation
Indices: 124697785--124697948 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
124697775 CAAAATTTAA
* * * *
124697785 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCATAATTGCCTTCGGGTCTTAGC
* *** * * *
124697825 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCATAATTGCCTTCGGGTCTTAGC
*
124697865 CCGGATATAACAACTAGCATGAA-TGCCTTCGGGTGTTAGC
1 CCGGATATAACAACTAGCAT-AATTGCCTTCGGGTCTTAGC
*
124697905 CCGGATATAATC-ACTAGCATAATTGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCATAATTGCCTTCGGGTCTTAGC
124697945 CCGG
1 CCGG
124697949 GTATTATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCATAATTGCCTTCGGGTCTTAGC
Found at i:124703937 original size:37 final size:37
Alignment explanation
Indices: 124703830--124703940 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
124703820 AGCTCAGATG
** * *
124703830 AAATCTCCACACAAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
124703867 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
124703904 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
124703941 TAGTCACCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:124703960 original size:37 final size:37
Alignment explanation
Indices: 124703830--124703968 Score: 152
Period size: 37 Copynumber: 3.8 Consensus size: 37
124703820 AGCTCAGATG
* * * *
124703830 AAATCTCCACACAAAGTTATCGGGTCTTACCCGAACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* * *
124703867 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* *
124703904 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
* * * * *
124703941 TAGTCACCACATATGGTCATCTGGTCTT
1 AAATCACCACACATAGTCATCGGGTCTT
124703969 TAATCCCAGG
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCACCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:124705012 original size:17 final size:18
Alignment explanation
Indices: 124704970--124705018 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
124704960 AGTTGAAAAG
124704970 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
124704989 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
124705006 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
124705019 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:124705905 original size:40 final size:40
Alignment explanation
Indices: 124705839--124706005 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
124705829 AAATTGAATG
* * *
124705839 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
124705878 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
124705918 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
124705958 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
124705998 ATATCCGG
1 ATATCCGG
124706006 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:124710900 original size:40 final size:39
Alignment explanation
Indices: 124710809--124710919 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 39
124710799 ATAACCACGT
* *
124710809 GCACAAATGCCTTCGGGTCTTAGCCCCGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCCGATAGAATGACTA
* *
124710849 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCCGATAGAATG--ACTA
* *
124710889 GCACAATTGCCTTCGGGTCTTAACCCAGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCCGATA
124710920 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 55 0.92
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCCGATAGAATGACTA
Found at i:124710943 original size:80 final size:80
Alignment explanation
Indices: 124710809--124710958 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
124710799 ATAACCACGT
* * *
124710809 GCACAAATGCCTTCGGGTCTTAGCCCCGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
124710874 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
124710889 GCACAATTGCCTTCGGGTCTTAACCCAGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
124710952 CCCGGAT
64 CCCGGAT
124710959 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCAGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:124717271 original size:50 final size:50
Alignment explanation
Indices: 124717152--124717544 Score: 245
Period size: 51 Copynumber: 7.8 Consensus size: 50
124717142 ATTGTGAGAA
* * *** * * *
124717152 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* *
124717204 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * * *
124717254 CGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
** * * * *
124717305 CATGTGTGTAGTACTAAGTGCGGGATACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * ** *
124717355 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *** * * *
124717404 CGCATGTGTAGTACTAAGTGCAGGCTGCTATACGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG-TTAGGT
* * * * ** ** * *
124717455 CACATGTATGGTACTAATTGCAGGCCACTATCG-GTAAGAGACGGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTA-CGTGTACCAGATAG-TTAGGT
* *
124717506 CACA-GATGTAGTACTAAGTGCAGGCTACTATGTGCACCA
1 CACATG-TGTAGTACTAAGTGCAGGCTACTACGTGTACCA
124717545 AACAGCTTCA
Statistics
Matches: 259, Mismatches: 74, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
49 38 0.15
50 84 0.32
51 101 0.39
52 36 0.14
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:124717412 original size:101 final size:99
Alignment explanation
Indices: 124717207--124717391 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 99
124717197 TTTAGGGCAC
* *
124717207 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATAGTTAGGTCACATGTGTAGTACTAAG
* *
124717272 TGCAGGATACTATGCGTACCCGACAACTTCAATCA
66 TGCAGGATACTACGCGTACCCGACAACTTC-AGCA
* * * * *
124717307 TGTGTGTAGTACTAAGTGCGGGATACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 -GTGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
* * *
124717372 GTGTAGGCTACTACGTGTAC
65 GTGCAGGATACTACGCGTAC
124717392 TGGATTGTTG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (99 bp):
GTGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATAGTTAGGTCACATGTGTAGTACTAAG
TGCAGGATACTACGCGTACCCGACAACTTCAGCA
Found at i:124717469 original size:150 final size:151
Alignment explanation
Indices: 124717152--124717471 Score: 399
Period size: 150 Copynumber: 2.1 Consensus size: 151
124717142 ATTGTGAGAA
* * * * * * * *
124717152 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGGCACGTGTGTAGTA
1 CACATGTATAGTACTAAGTGCGGGATACTACGTGTATCAGATGG--TTAGGGCACGTGTGTAGTA
124717217 CTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGATAC
64 CTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGATAC
*
124717282 TATGCGTACCCGACAACTTCAAT
129 TATACGTACCCGACAACTTCAAT
** * *
124717305 CATGTGTGTAGTACTAAGTGCGGGATACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
1 CACATGTATAGTACTAAGTGCGGGATACTACGTGTATCAGATGGTTAGGGCACGTGTGTAGTACT
* * ** * * *
124717370 AAGTGTAGGCTACTACGTGTACTGGATTGTT-GGTCGCATGTGTAGTACTAAGTGCAGGCTGCTA
66 AAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGATACTA
* * *
124717434 TACGTACCCGATAGCTTCGAT
131 TACGTACCCGACAACTTCAAT
*
124717455 CACATGTATGGTACTAA
1 CACATGTATAGTACTAA
124717472 TTGCAGGCCA
Statistics
Matches: 142, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
150 61 0.43
151 46 0.32
153 35 0.25
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (151 bp):
CACATGTATAGTACTAAGTGCGGGATACTACGTGTATCAGATGGTTAGGGCACGTGTGTAGTACT
AAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGATACTA
TACGTACCCGACAACTTCAAT
Found at i:124719590 original size:48 final size:48
Alignment explanation
Indices: 124719514--124719935 Score: 429
Period size: 48 Copynumber: 8.8 Consensus size: 48
124719504 GTTACAATGA
* * * * *
124719514 GAGCTAGTGTAAGACCATGTCTGAAACATGGTATCAGCCTCGATATGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
* * ** * * *
124719562 GAGCCAGTGTAAAACCATGTTTGGAACATGGCATCAACATTGAGATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
* * * * *
124719610 GAGCTAATATAAGACCATGTCTGGGACATTGCATCGGCCTTGATATGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
* * * *
124719658 GAGCTAGTGTAAGACCATGTTTGGAACATGACATCGGCATTGAGATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
* * *
124719706 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
* * * *
124719754 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGAGATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
* * *
124719802 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCGACT-TGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGA-TATGT
* * * *
124719850 -AGGCTAGGGTAAGACCATGTTTGGAACATGGCATTGGCAC-CGATATAT
1 GA-GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC-CTTGATATGT
* *
124719898 GAAAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCG
1 G--AGCTAGTGTAAGACCATGT-TTGGAACATGGCATCG
124719936 ACATCTTACC
Statistics
Matches: 307, Mismatches: 59, Indels: 14
0.81 0.16 0.04
Matches are distributed among these distances:
47 2 0.01
48 274 0.89
49 1 0.00
50 26 0.08
51 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTTGATATGT
Found at i:124719675 original size:96 final size:96
Alignment explanation
Indices: 124719510--124719935 Score: 586
Period size: 96 Copynumber: 4.4 Consensus size: 96
124719500 GGGTGTTACA
** * * * *
124719510 ATGAGAGCTAGTGTAAGACCATGTCTGAAACATGGTATCAGCCTCGATATGTGAGCCAGTGTAAA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
*
124719575 ACCATGTTTGGAACATGGCATCAACATTGAG
66 ACCATGTTTGGAACATGGCATCGACATTGAG
* * * *
124719606 ATGAGAGCTAATATAAGACCATGTCTGGGACATTGCATCGGCCTTGATATGTGAGCTAGTGTAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
* *
124719671 ACCATGTTTGGAACATGACATCGGCATTGAG
66 ACCATGTTTGGAACATGGCATCGACATTGAG
124719702 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
124719767 ACCATGTTTGGAACATGGCATCGACATTGAG
66 ACCATGTTTGGAACATGGCATCGACATTGAG
* * *
124719798 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCGACT-TGT-AGGCTAGGGTA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TATGTGA-GCTAGTGTA
* * ** *
124719861 AGACCATGTTTGGAACATGGCATTGGCACCGATAT
64 AGACCATGTTTGGAACATGGCATCGACATTG--AG
* * *
124719896 ATGAAAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
124719936 ACATCTTACC
Statistics
Matches: 295, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.00
96 256 0.87
97 1 0.00
98 37 0.13
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (96 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
ACCATGTTTGGAACATGGCATCGACATTGAG
Found at i:124732064 original size:40 final size:40
Alignment explanation
Indices: 124732009--124732256 Score: 279
Period size: 40 Copynumber: 6.2 Consensus size: 40
124731999 TGAATGATAC
* *
124732009 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
124732049 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
124732089 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* *
124732129 CCGGGCTAAGACCTGAAGGCATTCGTG-TGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGATTATAT
* * ** *
124732169 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
124732209 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
124732249 CC-GGCTAA
1 CCGGGCTAA
124732257 ATTCCGAAGA
Statistics
Matches: 179, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.03
40 171 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:124732222 original size:120 final size:120
Alignment explanation
Indices: 124732009--124732256 Score: 315
Period size: 120 Copynumber: 2.1 Consensus size: 120
124731999 TGAATGATAC
* * *
124732009 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTA
* ** *
124732074 TGCTAGTGATTAAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
66 TGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGGTTATAT
* *
124732129 CCGGGCTAAGACCTGAAGGCATTCGTG-TGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATTCATGCT-AG-TGATTATATCCGGGCTAAGACCCGAAGGCATT
* * * **
124732192 TGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
64 TATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
124732249 CC-GGCTAA
1 CCGGGCTAA
124732257 ATTCCGAAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
119 7 0.06
120 99 0.89
121 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
Found at i:124733762 original size:48 final size:48
Alignment explanation
Indices: 124733632--124734028 Score: 336
Period size: 48 Copynumber: 8.2 Consensus size: 48
124733622 GGGGTGTTAC
* * *
124733632 ACATGGCATC-AGCCTCGATATGTGAGCCAGTGTAAGACCATTTTTGGG
1 ACATGGCATCGA-CCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * * * * * * * *
124733680 TCATGACATTGGCATTGAGATGAGAGCTAGTGTAAGACCATGTATGGG
1 ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * * * * *
124733728 ACATGGCATCGACCTCGATATGTGAGCCAATGTAAGGCCATGTTTAGA
1 ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * ** * *
124733776 ACATGGAATCGACATTAAGATGAGAGCTAGTGTAAGACCATGTCTGGG
1 ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
**
124733824 ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGT-TTTG
1 ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * * * *
124733871 ACTATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACCATGTCTGGG
1 AC-ATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * * *
124733920 ACATGGCATCGGCCTTGACTTATG-G-GCTAGTGTAAGACCATGTTTGGA
1 ACATGGCATCGACCTCGA--TATGTGAGCTAGTGTAAGACCATGTCTGGG
* * * *
124733968 ACATGGCATCGGCAC-CGATATATGAAAGCCAGTGTAAGATCATGTCTGGG
1 ACATGGCATCGAC-CTCGATATGTG--AGCTAGTGTAAGACCATGTCTGGG
*
124734018 ACATGTCATCG
1 ACATGGCATCG
124734029 GCATCTTACC
Statistics
Matches: 276, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
46 3 0.01
47 5 0.02
48 230 0.83
49 6 0.02
50 32 0.12
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
Found at i:124733797 original size:96 final size:96
Alignment explanation
Indices: 124733632--124734028 Score: 471
Period size: 96 Copynumber: 4.1 Consensus size: 96
124733622 GGGGTGTTAC
* ** *
124733632 ACATGGCATC-AGCCTCGATATGTGAGCCAGTGTAAGACCATTTTTGGGTCAT-GACATTGGCAT
1 ACATGGCATCGA-CCTCGATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGA-ATCGGCAT
* *
124733695 TGAGATGAGAGCTAGTGTAAGACCATGTATGGG
64 TAAGATGAGAGCTAGTGTAAGACCATGTCTGGG
* * * *
124733728 ACATGGCATCGACCTCGATATGTGAGCCAATGTAAGGCCATGTTTAGAACATGGAATCGACATTA
1 ACATGGCATCGACCTCGATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTA
124733793 AGATGAGAGCTAGTGTAAGACCATGTCTGGG
66 AGATGAGAGCTAGTGTAAGACCATGTCTGGG
* * *
124733824 ACATGGCATCGACCTCGATATGTGAGCTAGTGTAAGACCATGTTTTG-ACTATGGCATCGGCATT
1 ACATGGCATCGACCTCGATATGTGAGCCAGTGTAAGACCATGTTTGGAAC-ATGGAATCGGCATT
*
124733888 GAGATGAGAGCTAGTGTAAGACCATGTCTGGG
65 AAGATGAGAGCTAGTGTAAGACCATGTCTGGG
* * * *
124733920 ACATGGCATCGGCCTTGACTTATG-G-GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAC
1 ACATGGCATCGACCTCGA--TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCA-
** * * * *
124733983 CGATATATGAAAGCCAGTGTAAGATCATGTCTGGG
63 TTA-AGATGAGAGCTAGTGTAAGACCATGTCTGGG
*
124734018 ACATGTCATCG
1 ACATGGCATCG
124734029 GCATCTTACC
Statistics
Matches: 265, Mismatches: 28, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
95 2 0.01
96 216 0.82
97 6 0.02
98 41 0.15
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
ACATGGCATCGACCTCGATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCATTA
AGATGAGAGCTAGTGTAAGACCATGTCTGGG
Found at i:124741994 original size:29 final size:28
Alignment explanation
Indices: 124741960--124742061 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
124741950 TACTCAATCA
* *
124741960 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-AGATTCAAGCT
* * *
124741989 CGCACACATAGTGCCATA-AGTCCAAACT
1 CGCACACTTAGTGCCATAGA-TTCAAGCT
*
124742017 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATAGATT-CAAGCT
*
124742046 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
124742062 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.02
28 23 0.38
29 37 0.61
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATAGATTCAAGCT
Found at i:124746161 original size:26 final size:25
Alignment explanation
Indices: 124746132--124746190 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
124746122 AGCATACACC
124746132 ATTCATGCCATATAAT-TATCAACCAA
1 ATTCATGCCATATAATCTAT--ACCAA
*
124746158 ATTCATG-CTTATAATCTATACCAA
1 ATTCATGCCATATAATCTATACCAA
124746182 A-TCATGCCA
1 ATTCATGCCA
124746191 ATTCGTAAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 5 0.17
24 7 0.24
25 7 0.24
26 10 0.34
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (25 bp):
ATTCATGCCATATAATCTATACCAA
Found at i:124747138 original size:42 final size:45
Alignment explanation
Indices: 124747074--124747182 Score: 136
Period size: 42 Copynumber: 2.5 Consensus size: 45
124747064 CTTACTTGTA
* * *
124747074 ATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTATACG-AAAT
1 ATCAAATA-CGATGCCAATGTCCAAGACAGGGTCTTACACGTAAAT
*
124747119 -T-AAATACGATGCCAATGTCCAAGACATGGTCTTACACGTAAAT
1 ATCAAATACGATGCCAATGTCCAAGACAGGGTCTTACACGTAAAT
*
124747162 ATCAAAT-CGATGCCAACGTCC
1 ATCAAATACGATGCCAATGTCC
124747183 TTGACTTGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
42 28 0.50
43 9 0.16
44 15 0.27
45 4 0.07
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (45 bp):
ATCAAATACGATGCCAATGTCCAAGACAGGGTCTTACACGTAAAT
Found at i:124747193 original size:44 final size:42
Alignment explanation
Indices: 124747042--124747204 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
124747032 AGCTTGTACA
* * * ** * *
124747042 ATGCCAACCTCCTAGACTTGGTCTTACTTGTAATCAAATATCG
1 ATGCCAACGTCCAAGACATGGTCTTACACGAAATTAAATA-CG
* * *
124747085 ATGCC-ACTGTCCCAGACAGGGTCTTATACGAAATTAAATACG
1 ATGCCAAC-GTCCAAGACATGGTCTTACACGAAATTAAATACG
*
124747127 ATGCCAATGTCCAAGACATGGTCTTACACGTAAATATCAAAT-CG
1 ATGCCAACGTCCAAGACATGGTCTTACACG-AAAT-T-AAATACG
** * *
124747171 ATGCCAACGTCCTTGACTTGGTCTTACATGAAAT
1 ATGCCAACGTCCAAGACATGGTCTTACACGAAAT
124747205 CACATATTGG
Statistics
Matches: 97, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.29
43 37 0.38
44 28 0.29
45 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCAACGTCCAAGACATGGTCTTACACGAAATTAAATACG
Found at i:124747667 original size:27 final size:27
Alignment explanation
Indices: 124747623--124747710 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
124747613 CAAAATAGTC
* * *
124747623 ATTTTACCCTATAGGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
*
124747650 ATTTTACACTACAAGGGTAATTCGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
* * *
124747677 ATTTTACA-AATC-AGGGTATTTTGATA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
124747703 ATTTTACA
1 ATTTTACA
124747711 AATCGGGGTC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
26 20 0.38
27 32 0.62
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:124755791 original size:27 final size:27
Alignment explanation
Indices: 124755760--124755842 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
124755750 AGGCCTAATG
124755760 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* *** ***
124755787 ATGTGAT-AAGGCCTAA-TGGCCA-A-
1 ATGTGATGAATGTGAAAGTGTATATAT
124755810 -TGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
124755836 ATGTGAT
1 ATGTGAT
124755843 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:124755828 original size:49 final size:49
Alignment explanation
Indices: 124755719--124756033 Score: 429
Period size: 47 Copynumber: 6.7 Consensus size: 49
124755709 GGTTTTACGC
* * *
124755719 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAAT-G---ATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
124755764 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
*
124755813 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
* *
124755862 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCCAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
* *
124755909 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
* * * *
124755956 GATGAATGTGAAAGTGTA-A-ATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
*
124756003 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
124756034 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 13, Indels: 16
0.90 0.05 0.06
Matches are distributed among these distances:
45 38 0.15
46 4 0.02
47 130 0.52
48 6 0.02
49 70 0.28
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:124759166 original size:28 final size:26
Alignment explanation
Indices: 124759134--124759191 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
124759124 TTTATCTAAT
* *
124759134 TTAATTAATTAATTTAAAACCTAAATTA
1 TTAATGAAATAATTTAAAA--TAAATTA
*
124759162 TTAATGAAATATTTTAAAATAAATTA
1 TTAATGAAATAATTTAAAATAAATTA
124759188 TTAA
1 TTAA
124759192 ATATAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 11 0.41
28 16 0.59
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (26 bp):
TTAATGAAATAATTTAAAATAAATTA
Found at i:124769832 original size:40 final size:40
Alignment explanation
Indices: 124769737--124769967 Score: 290
Period size: 40 Copynumber: 5.8 Consensus size: 40
124769727 TGGATGATAA
* * *
124769737 TCGGGCTAAGTCCCTAAGGCATTT-TGCGCTAGTGACTA-GT
1 TCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTACAT
*
124769777 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTACAT
1 TC-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
124769818 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
124769858 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATAT
1 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
124769897 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
124769937 TCGGGCTATGTCTCGAAGGCA-TTGAGCGAGT
1 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
124769968 AGCTATATCC
Statistics
Matches: 172, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
39 44 0.26
40 100 0.58
41 24 0.14
42 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (40 bp):
TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:124769916 original size:79 final size:80
Alignment explanation
Indices: 124769738--124769967 Score: 286
Period size: 79 Copynumber: 2.9 Consensus size: 80
124769728 GGATGATAAT
* * ** *
124769738 CGGGCTAAGTCCCTAAGGCATTT-TGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTACATCCGGGCTAAGTCCCGAAGGCATTT
* *
124769802 GTGCGGGTTACTACATT
64 GTGCGAGTTACTACATC
*
124769819 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGT
*
124769884 GC-AGTTACTATATC
66 GCGAGTTACTACATC
* * * * * *
124769898 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATTCGGGCTATGTCTCGAAGGCA-TTGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGT
124769962 GCGAGT
66 GCGAGT
124769968 AGCTATATCC
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 5 0.04
79 66 0.50
80 34 0.26
81 22 0.17
82 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTACATC
Found at i:124769954 original size:119 final size:120
Alignment explanation
Indices: 124769738--124769967 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 120
124769728 GGATGATAAT
* * *
124769738 CGGGCTAAGTCCCTAAGGCATTTTGCGCTAGTGACTAGTTCTGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
124769803 TGCGGGTTACTACATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
66 TGCGAGTTACTACATTCGGGCTAAGTCCCGAAGGCA-TTGAGCGAGTTATTACATC
* *
124769859 CGGGCTAAGTCCCGAAGGCA-TTTGTGC-AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTG
1 CGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTG
* * *
124769921 GTGCGAGTTACTATATTCGGGCTATGTCTCGAAGGCATTGAGCGAGT
65 GTGCGAGTTACTACATTCGGGCTAAGTCCCGAAGGCATTGAGCGAGT
124769968 AGCTATATCC
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
118 10 0.10
119 63 0.64
120 6 0.06
121 19 0.19
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATTCGGGCTAAGTCCCGAAGGCATTGAGCGAGTTATTACATC
Found at i:124782956 original size:38 final size:39
Alignment explanation
Indices: 124782843--124782985 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
124782833 CCGCACAAAG
*
124782843 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
124782883 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
124782922 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
124782960 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
124782986 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:124782964 original size:77 final size:79
Alignment explanation
Indices: 124782803--124782984 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
124782793 TCGTTCAAAC
* * **
124782803 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
124782868 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
124782883 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
124782946 CAATTTGCACAATT
66 CAATTTGCACAATT
124782960 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
124782985 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:124790147 original size:38 final size:39
Alignment explanation
Indices: 124790034--124790176 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
124790024 CCGCACAAAG
*
124790034 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
124790074 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
124790113 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
124790151 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
124790177 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:124790155 original size:77 final size:79
Alignment explanation
Indices: 124789994--124790175 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
124789984 TCGTTCAAAC
* * **
124789994 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
124790059 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
124790074 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
124790137 CAATTTGCACAATT
66 CAATTTGCACAATT
124790151 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
124790176 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:124792749 original size:15 final size:15
Alignment explanation
Indices: 124792731--124792777 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
124792721 ATTTATATAT
124792731 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
124792746 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
124792761 TTCAATCAATATAAA
1 TTCAATCAATATAAA
124792776 TT
1 TT
124792778 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:124793759 original size:31 final size:32
Alignment explanation
Indices: 124793701--124793764 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
124793691 CATACATTTG
*
124793701 TCATAATTTAATATATTTATTACATAAAAATC
1 TCATAATATAATATATTTATTACATAAAAATC
*
124793733 TCATAATATAAT-TATTTAATTA-ATAAATATC
1 TCATAATATAATATATTT-ATTACATAAAAATC
124793764 T
1 T
124793765 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (32 bp):
TCATAATATAATATATTTATTACATAAAAATC
Found at i:124793767 original size:20 final size:19
Alignment explanation
Indices: 124793744--124793781 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
124793734 CATAATATAA
124793744 TTATTTAATTAATAAATATC
1 TTATTTAA-TAATAAATATC
*
124793764 TTATTTAATATTAAATAT
1 TTATTTAATAATAAATAT
124793782 TAATATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATTTAATAATAAATATC
Found at i:124804574 original size:14 final size:14
Alignment explanation
Indices: 124804555--124804582 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
124804545 GAATTACTAT
124804555 AATGCCCCTAGCAG
1 AATGCCCCTAGCAG
124804569 AATGCCCCTAGCAG
1 AATGCCCCTAGCAG
124804583 CCCGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.21, T:0.14
Consensus pattern (14 bp):
AATGCCCCTAGCAG
Found at i:124810325 original size:55 final size:54
Alignment explanation
Indices: 124810237--124810494 Score: 262
Period size: 55 Copynumber: 4.9 Consensus size: 54
124810227 CATTAGGGTT
*
124810237 CAAGGATACCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTCTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCA-TTGGTAAGGTCTCTAAGG
* * * * * *
124810292 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT-CTCTAAGG
* * *
124810347 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GT-TCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTC-TAAGG
* * * * *
124810400 CAAGGCTACCATGTAAGACCATGTCAATACATGGCAATGGTAA-GTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGG
* * *
124810450 -AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGT
124810495 ACCCGTGTAT
Statistics
Matches: 171, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
50 2 0.01
52 7 0.04
53 39 0.23
54 11 0.06
55 70 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGGTCTCTAAGG
Found at i:124810444 original size:108 final size:110
Alignment explanation
Indices: 124810245--124810445 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
124810235 TTCAAGGATA
*
124810245 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTCTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGA
*
124810310 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* **
124810355 CCATGTAAGACCATGCCAAGGCATGGCA-TTGGTGA-GT-TCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTCTC-TAAGGCAAGGAAACCATGTAAG
* *
124810417 ACCATGTCAATACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
124810446 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 2 0.02
108 47 0.57
109 6 0.07
110 28 0.34
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAGTTGGTAAGGTCTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:124810705 original size:16 final size:16
Alignment explanation
Indices: 124810684--124810714 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
124810674 ATAAATTTGA
124810684 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
124810700 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
124810715 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:124815309 original size:48 final size:47
Alignment explanation
Indices: 124815234--124815506 Score: 248
Period size: 48 Copynumber: 5.7 Consensus size: 47
124815224 GTTATGTGAG
* *
124815234 CTAGTGTAAGACCATGTTTGGAACATGGCATCAGTA-TTTATATGAGAA
1 CTAGTGTAAGACCATGTCTGGAACATGGCATC-G-ACTCTATATGAGAA
* * * * * *
124815282 CTACTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATACGTGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATCGA-CTCTATATGAGAA
* *
124815330 CCAGTGTAAGACCATGTTTGGAACATGGCATCGGTA-TCTATATGAGAGA
1 CTAGTGTAAGACCATGTCTGGAACATGGCATC-G-ACTCTATATGAGA-A
* * * * *
124815379 -TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGTGGA
1 CTAGTGTAAGACCATGTCTGGAACATGGCATCGA-CTCTATATGAGAA
* *
124815426 CTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAC-CGATATATGAGAG
1 CTAGTGTAAGACCATGTCTGGAACATGGCATC-G-ACTC--TATATGAGAA
* *
124815476 CTAGTGTAAGACTATGTCTGGGACATGGCAT
1 CTAGTGTAAGACCATGTCTGGAACATGGCAT
124815507 TGGCATCTTA
Statistics
Matches: 180, Mismatches: 33, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
46 2 0.01
47 3 0.02
48 137 0.76
49 3 0.02
50 35 0.19
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGAACATGGCATCGACTCTATATGAGAA
Found at i:124815393 original size:96 final size:96
Alignment explanation
Indices: 124815229--124815506 Score: 416
Period size: 96 Copynumber: 2.9 Consensus size: 96
124815219 CTAAGGTTAT
* * *
124815229 GTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGTATTTATATGAGA-ACTACTGTAAGA
1 GTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATCTATATGAGAGA-TAGTGTAAGA
*
124815293 CCATGTCTGGGACATGGCATCGACCTCGATAC
65 CCATGTCTGGGACATGGCATCGACCTCGACAC
*
124815325 GTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTATCTATATGAGAGATAGTGTAAGAC
1 GTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATCTATATGAGAGATAGTGTAAGAC
*
124815390 CATGTCTGGGACATGGCATCGACCTCGACAT
66 CATGTCTGGGACATGGCATCGACCTCGACAC
* * *
124815421 GTG-GACTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGATATATGAGAGCTAGTGTAA
1 GTGAG-CTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATC--TATATGAGAGATAGTGTAA
*
124815485 GACTATGTCTGGGACATGGCAT
63 GACCATGTCTGGGACATGGCAT
124815507 TGGCATCTTA
Statistics
Matches: 167, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
95 1 0.01
96 126 0.75
97 1 0.01
98 39 0.23
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
GTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATCTATATGAGAGATAGTGTAAGAC
CATGTCTGGGACATGGCATCGACCTCGACAC
Found at i:124819601 original size:25 final size:25
Alignment explanation
Indices: 124819562--124819635 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 25
124819552 CAGGCACATA
*
124819562 ACAACTCAT-ATGAGCTTACCAATTT
1 ACAACTCATGA-GAGCATACCAATTT
* * *
124819587 ATACCTCATGAGAGCATACCGATTT
1 ACAACTCATGAGAGCATACCAATTT
* *
124819612 GCAACTCGTGAGAGCATACCAATT
1 ACAACTCATGAGAGCATACCAATT
124819636 CACAGCTCGT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (25 bp):
ACAACTCATGAGAGCATACCAATTT
Found at i:124819644 original size:25 final size:25
Alignment explanation
Indices: 124819595--124819655 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
124819585 TTATACCTCA
* **
124819595 TGAGAGCATACCGATTTGCAACTCG
1 TGAGAGCATACCAATTCACAACTCG
*
124819620 TGAGAGCATACCAATTCACAGCTCG
1 TGAGAGCATACCAATTCACAACTCG
124819645 T-ATGAGCATAC
1 TGA-GAGCATAC
124819656 ATGTACTGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (25 bp):
TGAGAGCATACCAATTCACAACTCG
Found at i:124824360 original size:49 final size:47
Alignment explanation
Indices: 124824257--124824483 Score: 153
Period size: 48 Copynumber: 4.7 Consensus size: 47
124824247 TAATACCGAT
* * *
124824257 GCCATGTCCCAG-CATGGTCTTACACTGGCTCATCCATCAAGTCGAC
1 GCCATGTCCCAGACATGGACTTACACTGACTCATCCATCAAGGCGAC
*
124824303 GCCATGTCCCAGACATGGACTTACATTGACT-ATCGCAATCAAGGCTGAC
1 GCCATGTCCCAGACATGGACTTACACTGACTCATC-C-ATCAAGGC-GAC
* * * *
124824352 GCCATGTCCCAAACATGGTA-TTACACT-ACTC-TCACAT-ATCCGTGTCAAT
1 GCCATGTCCCAGACATGG-ACTTACACTGACTCATC-CATCA--AG-G-CGAC
* * * * * * *
124824401 GCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-ACGTGCCAAT
1 GCCATGTCCCAGACATGGACTTACACTGACTCATCCATCAAG-G-CGAC
* *
124824449 GCCATGTCCCAGACATGGTCTTACACTGACACATC
1 GCCATGTCCCAGACATGGACTTACACTGACTCATC
124824484 TCGTAGCCAA
Statistics
Matches: 152, Mismatches: 16, Indels: 24
0.79 0.08 0.12
Matches are distributed among these distances:
46 16 0.11
47 18 0.12
48 56 0.37
49 52 0.34
50 8 0.05
51 2 0.01
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGACTTACACTGACTCATCCATCAAGGCGAC
Found at i:124824460 original size:48 final size:47
Alignment explanation
Indices: 124824255--124824520 Score: 179
Period size: 49 Copynumber: 5.6 Consensus size: 47
124824245 TATAATACCG
* * * * ** * *
124824255 ATGCCATGTCCCAG-CATGGTCTTACACTGGCTCATCCATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATCGTGCCA
* * * * * * **
124824301 ACGCCATGTCCCAGACATGGACTTACATTGACTATCGCAATCAAG-GCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTCTATC--GTGCCA
* * * * * *
124824350 ACGCCATGTCCCAAACATGGTATTACACT-ACTCTCACATATCCGTGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACAC-CTC-TAT-CGTGCCA
124824399 ATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-CGTGCCA
*
124824447 ATGCCATGTCCCAGACATGGTCTTACACTGACACATC--TCGTAGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATCGT-GCCA
*
124824493 ATG-CATGTCCCA-A-ATCTGTCTTACACTG
1 ATGCCATGTCCCAGACAT-GGTCTTACACTG
124824521 GCTTACATCT
Statistics
Matches: 177, Mismatches: 32, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
43 2 0.01
44 12 0.07
45 12 0.07
46 21 0.12
47 14 0.08
48 54 0.31
49 58 0.33
50 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATCGTGCCA
Found at i:124824529 original size:46 final size:46
Alignment explanation
Indices: 124824397--124824614 Score: 166
Period size: 48 Copynumber: 4.7 Consensus size: 46
124824387 ATATCCGTGT
*
124824397 CAATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGT-GC
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACACATC--T-CGTAGC
124824445 CAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
* *
124824491 CAATG-CATGTCCCA-A-ATCTGTCTTACACTGGCTTACATCTCG-AGGC
1 CAATGCCATGTCCCAGACAT-GGTCTTACACTGAC--ACATCTCGTA-GC
* * ** * *
124824537 CGATG-TATGTCTTAGACAT-GTCTTACACTTACTC-TCGTC-TCAATGC
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGT--A-GC
** *
124824583 TGATGCCATATCCCAGACATGGTCTTACACTG
1 CAATGCCATGTCCCAGACATGGTCTTACACTG
124824615 GGCTCTCAAA
Statistics
Matches: 140, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
43 4 0.03
44 16 0.11
45 13 0.09
46 46 0.33
47 11 0.08
48 50 0.36
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGC
Found at i:124824739 original size:19 final size:19
Alignment explanation
Indices: 124824715--124824771 Score: 105
Period size: 19 Copynumber: 3.0 Consensus size: 19
124824705 TTTCCTAAGG
124824715 TTCAAACGGGAGTTATGCT
1 TTCAAACGGGAGTTATGCT
124824734 TTCAAACGGGAGTTATGCT
1 TTCAAACGGGAGTTATGCT
*
124824753 TTCCAACGGGAGTTATGCT
1 TTCAAACGGGAGTTATGCT
124824772 ATCTCAATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (19 bp):
TTCAAACGGGAGTTATGCT
Found at i:124830072 original size:28 final size:28
Alignment explanation
Indices: 124830003--124830103 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
124829993 GACAAGATTG
* * * *
124830003 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
124830033 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
124830061 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
124830090 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
124830104 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:124838013 original size:28 final size:28
Alignment explanation
Indices: 124837944--124838044 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
124837934 GACAAGATTG
* * * *
124837944 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
124837974 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
124838002 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
124838031 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
124838045 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:124839468 original size:24 final size:24
Alignment explanation
Indices: 124839436--124839543 Score: 114
Period size: 24 Copynumber: 4.5 Consensus size: 24
124839426 ACCAAACGTT
* ***
124839436 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTAAAATC
*
124839460 GCACACATAGTGCATAGTAAAATC
1 GCACACATAGTGCTTAGTAAAATC
*
124839484 GCACACATAGTGCTATAGT-AAATT
1 GCACACATAGTGCT-TAGTAAAATC
*
124839508 G-ACACATAGTGCCATAGT-AAATC
1 GCACACATAGTG-CTTAGTAAAATC
124839531 GCACACATAGTGC
1 GCACACATAGTGC
124839544 ATTTGAGATT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
23 20 0.28
24 48 0.67
25 4 0.06
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCTTAGTAAAATC
Found at i:124839516 original size:23 final size:23
Alignment explanation
Indices: 124839458--124839545 Score: 133
Period size: 24 Copynumber: 3.7 Consensus size: 23
124839448 CTTATTATGT
124839458 TCGCACACATAGTGCATAGTAAAA
1 TCGCACACATAGTGCATAGT-AAA
124839482 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGC-ATAGTAAA
*
124839506 TTG-ACACATAGTGCCATAGTAAA
1 TCGCACACATAGTG-CATAGTAAA
124839529 TCGCACACATAGTGCAT
1 TCGCACACATAGTGCAT
124839546 TTGAGATTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
23 23 0.39
24 31 0.53
25 5 0.08
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24
Consensus pattern (23 bp):
TCGCACACATAGTGCATAGTAAA
Found at i:124839531 original size:47 final size:48
Alignment explanation
Indices: 124839436--124839543 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 48
124839426 ACCAAACGTT
* **
124839436 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCATAGTAAAATC
1 GCACACATAGTGCTTAGTAAATTCGCACACATAGTGCATAGTAAAATC
124839484 GCACACATAGTGCTATAGTAAATT-G-ACACATAGTGCCATAGT-AAATC
1 GCACACATAGTGCT-TAGTAAATTCGCACACATAGTG-CATAGTAAAATC
124839531 GCACACATAGTGC
1 GCACACATAGTGC
124839544 ATTTGAGATT
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
47 28 0.51
48 21 0.38
49 6 0.11
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTAAATTCGCACACATAGTGCATAGTAAAATC
Found at i:124843444 original size:40 final size:40
Alignment explanation
Indices: 124843399--124843565 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
124843389 CGGAATATAA
124843399 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
124843439 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
124843479 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
124843519 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
124843558 CCGGATAT
1 CCGGATAT
124843566 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:124851424 original size:40 final size:40
Alignment explanation
Indices: 124851379--124851545 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
124851369 CGGAATATAA
124851379 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
124851419 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
124851459 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
124851499 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
124851538 CCGGATAT
1 CCGGATAT
124851546 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:124853963 original size:40 final size:40
Alignment explanation
Indices: 124853904--124854124 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
124853894 CATTTGAATG
* *
124853904 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
124853944 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
124853984 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
124854024 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
124854064 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
124854104 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
124854125 AAACTTGGGT
Statistics
Matches: 164, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 151 0.92
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:124858028 original size:20 final size:19
Alignment explanation
Indices: 124858000--124858037 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
124857990 TTTTAAAGAC
*
124858000 TTTACTTTATTTTTATTTG
1 TTTACTTTATCTTTATTTG
124858019 TTTACTTTTATCTTTATTT
1 TTTAC-TTTATCTTTATTT
124858038 ACCTTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTACTTTATCTTTATTTG
Found at i:124860786 original size:13 final size:14
Alignment explanation
Indices: 124860770--124860798 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
124860760 ACACCCTAGA
124860770 GGAGG-AGAAAAGG
1 GGAGGCAGAAAAGG
124860783 GGAGGCAGAAAAGG
1 GGAGGCAGAAAAGG
124860797 GG
1 GG
124860799 GAGTAAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.41, C:0.03, G:0.55, T:0.00
Consensus pattern (14 bp):
GGAGGCAGAAAAGG
Found at i:124865785 original size:40 final size:40
Alignment explanation
Indices: 124865741--124865932 Score: 231
Period size: 40 Copynumber: 4.9 Consensus size: 40
124865731 CCGGATATAG
*
124865741 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
*
124865781 TACCAGCACGAAGCCTTCCTGCGGGATTTAACCCGAATATACAT
1 TACCAGCACGAAG----CCTGCGGGATTTAACCCGGATATACAT
124865825 T---------AAGCCTGCGGGATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
* * *
124865856 TACCAGCACAAAGCCTGTGGGATTTAACCTGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
*
124865896 TACCAGCACGAAGCCTGCGGGATTTAACCCAGATATA
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
124865933 TAATATATCG
Statistics
Matches: 130, Mismatches: 9, Indels: 26
0.79 0.05 0.16
Matches are distributed among these distances:
31 27 0.21
35 3 0.02
40 73 0.56
44 27 0.21
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
Found at i:124865834 original size:31 final size:31
Alignment explanation
Indices: 124865798--124865857 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
124865788 ACGAAGCCTT
124865798 CCTGCGGGATTTAACCCGAATATACATTAAG
1 CCTGCGGGATTTAACCCGAATATACATTAAG
*
124865829 CCTGCGGGATTTAACCCGGATATACATTA
1 CCTGCGGGATTTAACCCGAATATACATTA
124865858 CCAGCACAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (31 bp):
CCTGCGGGATTTAACCCGAATATACATTAAG
Found at i:124873855 original size:40 final size:40
Alignment explanation
Indices: 124873817--124873963 Score: 213
Period size: 40 Copynumber: 3.7 Consensus size: 40
124873807 TACCAGCACT
* *
124873817 AAGCCTGCGGGTTTTAACCCGGATATACATTACTAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATACATTACTAACACG
* *
124873857 AAGCCTGCGGGATTTAACCCAGATATACATTACTAACACA
1 AAGCCTGCGGGATTTAACCCGGATATACATTACTAACACG
* *
124873897 AAGCCTGTGGGATTTAACCCGGATATACATTACCAACACG
1 AAGCCTGCGGGATTTAACCCGGATATACATTACTAACACG
** *
124873937 AAGCCTATGGGATTGAACCCGGATATA
1 AAGCCTGCGGGATTTAACCCGGATATA
124873964 TAATATATTG
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (40 bp):
AAGCCTGCGGGATTTAACCCGGATATACATTACTAACACG
Found at i:124878377 original size:77 final size:78
Alignment explanation
Indices: 124878261--124878411 Score: 268
Period size: 77 Copynumber: 1.9 Consensus size: 78
124878251 GTGCGAATTG
124878261 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
124878325 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
*
124878338 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
*
124878403 ATTTGTGCG
65 AATTGTGCG
124878412 GGTTACCATA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
77 54 0.77
79 16 0.23
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:124878409 original size:40 final size:39
Alignment explanation
Indices: 124878250--124878411 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
124878240 TGTGTATGAA
*
124878250 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
124878289 TGTGCGAGTTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
124878327 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
124878366 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
124878406 TGTGCG
1 TGTGCG
124878412 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:124878427 original size:40 final size:39
Alignment explanation
Indices: 124878250--124878442 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
124878240 TGTGTATGAA
* *
124878250 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
124878289 TGTGCGAGTTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
124878327 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
124878366 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
124878406 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
124878443 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 36 0.26
39 61 0.44
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:124886376 original size:40 final size:39
Alignment explanation
Indices: 124886216--124886378 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
124886206 TGTGTATGAA
*
124886216 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
124886255 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
124886294 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
124886333 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
124886373 TGTGCG
1 TGTGCG
124886379 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:124886394 original size:40 final size:39
Alignment explanation
Indices: 124886216--124886409 Score: 262
Period size: 39 Copynumber: 4.9 Consensus size: 39
124886206 TGTGTATGAA
* *
124886216 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
124886255 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
124886294 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
124886333 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
124886373 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
124886410 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:124886436 original size:79 final size:78
Alignment explanation
Indices: 124886233--124886447 Score: 227
Period size: 78 Copynumber: 2.7 Consensus size: 78
124886223 ATTGTGATAT
** * *
124886233 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
** *
124886298 CGAGCTATGATAT
66 CGAGCTACCATAA
** * *
124886311 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
* *
124886376 GCGGGTTACCATAA
65 GCGAGCTACCATAA
* ** *
124886390 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
124886448 TATGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 49 0.41
79 45 0.38
80 24 0.20
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:124897017 original size:39 final size:38
Alignment explanation
Indices: 124896974--124897097 Score: 108
Period size: 39 Copynumber: 3.2 Consensus size: 38
124896964 ACCCAAGCTT
* *
124896974 CTTCGGAATACAACCGGATATAACCACACGCACGAATGC
1 CTTCGGAATAC-ACCGGATATAACAACTCGCACGAATGC
** * *
124897013 CTTCGGGTCTTAGC-CCGGATATAACGACTCGCACAAATGC
1 CTTC-GG-AATA-CACCGGATATAACAACTCGCACGAATGC
* *
124897053 CTTCGGTATTAGC-CCGGATATAACAACTTGCACGAATGC
1 CTTCGG-AATA-CACCGGATATAACAACTCGCACGAATGC
124897092 CTTCGG
1 CTTCGG
124897098 GTCTTAGCCC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
39 41 0.56
40 29 0.40
41 2 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (38 bp):
CTTCGGAATACACCGGATATAACAACTCGCACGAATGC
Found at i:124897032 original size:40 final size:40
Alignment explanation
Indices: 124896987--124897153 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
124896977 CGGAATACAA
124896987 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
124897027 CCGGATATAACGACTCGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
124897066 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
124897106 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
124897146 CCGGATAT
1 CCGGATAT
124897154 CATTCAATTG
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.35
40 71 0.65
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:124897105 original size:79 final size:79
Alignment explanation
Indices: 124896987--124897153 Score: 230
Period size: 79 Copynumber: 2.1 Consensus size: 79
124896977 CGGAATACAA
* *
124896987 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAA-CGACTCGCACAAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AAGC-ACTAGCACAAAT
*
124897051 GCCTTC-GGTATTAGC
64 GCCTTCGGGTATTAAC
** *
124897066 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAAAGTCACTAGCACAATTG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATAAAG-CACTAGCACAAATG
*
124897131 CCTTCGGGTCTTAAC
65 CCTTCGGGTATTAAC
124897146 CCGGATAT
1 CCGGATAT
124897154 CATTCAATTG
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
78 2 0.03
79 60 0.77
80 16 0.21
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATAAAGCACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:124905030 original size:40 final size:40
Alignment explanation
Indices: 124904985--124905152 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
124904975 CGGAATACAA
124904985 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
124905025 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
124905065 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
124905105 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
124905145 CCGGATAT
1 CCGGATAT
124905153 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:124905125 original size:80 final size:80
Alignment explanation
Indices: 124904985--124905152 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
124904975 CGGAATACAA
* *
124904985 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
124905050 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
124905065 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
124905128 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
124905145 CCGGATAT
1 CCGGATAT
124905153 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:124908826 original size:40 final size:40
Alignment explanation
Indices: 124908743--124908895 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
124908733 TCGAATGATG
* *
124908743 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
124908783 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
124908823 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
124908864 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
124908896 CGTTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:124916804 original size:40 final size:40
Alignment explanation
Indices: 124916721--124916873 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
124916711 TTGAATGATG
* *
124916721 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
124916761 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
124916801 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
124916842 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
124916874 CGTTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:124920715 original size:41 final size:41
Alignment explanation
Indices: 124920670--124920787 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
124920660 TGAAAGATAA
124920670 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
124920711 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
124920741 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
124920782 ATGTAG
1 ATGTAG
124920788 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:124920726 original size:71 final size:71
Alignment explanation
Indices: 124920638--124920801 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
124920628 GAGATGTATC
124920638 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
124920703 AGGACA
66 AGGACA
124920709 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
124920774 AGGACA
66 AGGACA
124920780 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
124920802 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:124928159 original size:41 final size:41
Alignment explanation
Indices: 124928114--124928231 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
124928104 TGAAAGATAA
124928114 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
124928155 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
124928185 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
124928226 ATGTAG
1 ATGTAG
124928232 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:124928170 original size:71 final size:71
Alignment explanation
Indices: 124928082--124928245 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
124928072 GAGATGTATC
124928082 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
124928147 AGGACA
66 AGGACA
124928153 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
124928218 AGGACA
66 AGGACA
124928224 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
124928246 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:124933320 original size:28 final size:28
Alignment explanation
Indices: 124933251--124933351 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
124933241 GACAAGATTG
* * * *
124933251 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
124933281 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
124933309 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
124933338 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
124933352 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:124938225 original size:40 final size:40
Alignment explanation
Indices: 124938126--124938236 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
124938116 TCGAATGATG
* *
124938126 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
124938166 TCCGGACTAAGAT-CC-AAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
*
124938205 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
124938237 CTATTATAAC
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
38 1 0.02
39 23 0.38
40 35 0.58
41 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:124943988 original size:40 final size:40
Alignment explanation
Indices: 124943887--124943989 Score: 98
Period size: 40 Copynumber: 2.6 Consensus size: 40
124943877 TCTGAAAACT
* ** * * **
124943887 CGCACACTTAATGCCGCATAAAGCCGAAGCTATTCCAATT
1 CGCACACTAAATGCCAAATATAGCTGAAGCTATTCCAAAA
*** *
124943927 CGCACACTAAATGCTTTATATAGCTGAAGCTATTTCAAAA
1 CGCACACTAAATGCCAAATATAGCTGAAGCTATTCCAAAA
*
124943967 CGCACACTAAGTGCCAAATATAG
1 CGCACACTAAATGCCAAATATAG
124943990 TTGATTTATC
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (40 bp):
CGCACACTAAATGCCAAATATAGCTGAAGCTATTCCAAAA
Found at i:124951146 original size:29 final size:29
Alignment explanation
Indices: 124951113--124951173 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
124951103 TTACATTACT
124951113 TAAATTACTTTCTCTTTGGGTTTTTAATG
1 TAAATTACTTTCTCTTTGGGTTTTTAATG
*
124951142 TAAATTACTTTCTCTTTGGGTTTTTGATG
1 TAAATTACTTTCTCTTTGGGTTTTTAATG
124951171 TAA
1 TAA
124951174 TAAGTCCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (29 bp):
TAAATTACTTTCTCTTTGGGTTTTTAATG
Found at i:124951728 original size:34 final size:35
Alignment explanation
Indices: 124951668--124951735 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
124951658 TCTGATTTAT
*
124951668 TTTTTTCTTAATCTATATATATATTCAAAATTAATC
1 TTTTTTCTTAATC-ATATATACATTCAAAATTAATC
*
124951704 TTTTTTCTTGATC-TATATACATTCAAAATTAA
1 TTTTTTCTTAATCATATATACATTCAAAATTAA
124951736 AATATTCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 18 0.60
36 12 0.40
ACGTcount: A:0.35, C:0.12, G:0.01, T:0.51
Consensus pattern (35 bp):
TTTTTTCTTAATCATATATACATTCAAAATTAATC
Found at i:124960919 original size:43 final size:43
Alignment explanation
Indices: 124960765--124960920 Score: 131
Period size: 43 Copynumber: 3.6 Consensus size: 43
124960755 ATATTTTTGA
* * *
124960765 GTAAGACCACGTCTGTAACATTGGCATCGACT-TATGATTTATGT
1 GTAAGACCACGTCTGGAACATTGGCATCGA-TATTTGA-TTACGT
* * * *
124960809 GTAAGAACACGTCTGGGACATTTGCATCG-TATTTGATTTCGT
1 GTAAGACCACGTCTGGAACATTGGCATCGATATTTGATTACGT
* * * * *
124960851 GTAAGACC-CTATCTAGG-ATAGTGGCATCGATATTTCATTACAT
1 GTAAGACCAC-GTCT-GGAACATTGGCATCGATATTTGATTACGT
*
124960894 GTAAGACCACGTCTGGAACGTTGGCAT
1 GTAAGACCACGTCTGGAACATTGGCAT
124960921 TGTATGAGCT
Statistics
Matches: 87, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.30
43 34 0.39
44 26 0.30
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (43 bp):
GTAAGACCACGTCTGGAACATTGGCATCGATATTTGATTACGT
Found at i:124964240 original size:40 final size:39
Alignment explanation
Indices: 124964072--124964256 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 39
124964062 AGAAATTGAA
* *
124964072 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
124964112 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
124964152 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
124964192 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
124964232 TGATATCCGGG-TAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
124964257 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 16 0.13
40 95 0.80
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:124972151 original size:39 final size:38
Alignment explanation
Indices: 124972086--124972264 Score: 134
Period size: 39 Copynumber: 4.6 Consensus size: 38
124972076 AAATTGAATG
*
124972086 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGAAAT-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCT--AATCT
* * *
124972124 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAAT-CT
* * *
124972163 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AATTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAA-T-CT
* * * *
124972202 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAATC-T
* *
124972241 GATATCCGGG-TAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
124972265 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 14, Indels: 17
0.79 0.09 0.11
Matches are distributed among these distances:
37 2 0.02
38 17 0.14
39 87 0.74
40 12 0.10
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAATCT
Found at i:124975461 original size:40 final size:39
Alignment explanation
Indices: 124975296--124975479 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
124975286 AAATTGAATG
* * *
124975296 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
124975336 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
124975376 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
124975416 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
124975455 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
124975480 CTTGGTCGGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:124983577 original size:40 final size:39
Alignment explanation
Indices: 124983412--124983595 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
124983402 AAATTGAATG
* * *
124983412 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
124983452 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
124983492 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
124983532 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
124983571 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
124983596 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:124983620 original size:80 final size:81
Alignment explanation
Indices: 124983452--124983640 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
124983442 GCTGGAAATT
* * * *
124983452 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
124983517 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
124983533 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
124983596 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
124983612 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
124983641 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:124985375 original size:40 final size:39
Alignment explanation
Indices: 124985309--124985514 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 39
124985299 TGTTCGGATG
* * *
124985309 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACT
* *
124985349 A-ATTCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACT
* * *
124985389 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACT
*
124985429 AT-ACCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACT
* **
124985467 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CT
*
124985507 ATATCCGG
1 ATAACCGG
124985515 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 23 0.16
39 25 0.18
40 89 0.63
41 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACT
Found at i:124985502 original size:78 final size:80
Alignment explanation
Indices: 124985309--124985502 Score: 241
Period size: 78 Copynumber: 2.5 Consensus size: 80
124985299 TGTTCGGATG
* * *
124985309 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGC
*
124985373 ATTCGTGCGAGCTACT
65 ATTCGTGCAAGCTACT
* * * * *
124985389 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGT-TATTATACCGGGCTAAGT-CCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCA
* *
124985452 TTTGTGCAAGTTACT
66 TTCGTGCAAGCTACT
* *
124985467 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
124985503 AGCTATATCC
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 52 0.54
79 14 0.14
80 29 0.30
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCA
TTCGTGCAAGCTACT
Found at i:124987170 original size:43 final size:42
Alignment explanation
Indices: 124987021--124987175 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 42
124987011 ATATCGTACA
* * *
124987021 ATGCCAACGTCCCAGACGTGGTCTTACATGCT-ATCTCATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-TAATCACATAT-G
* ** * *
124987064 TTGCCTCTGTCCTAGACAG-GGTCTTACACG-AATCAAATATG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAATCACATATG
* * *
124987105 ATACCGATGTCCCAGACATGGTCTTACACGTAATCACATATAG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATAT-G
*
124987148 ATGCCAAAGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
124987176 TGAGAACACA
Statistics
Matches: 88, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 24 0.27
42 16 0.18
43 47 0.53
44 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATG
Found at i:124987509 original size:15 final size:15
Alignment explanation
Indices: 124987489--124987517 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
124987479 GTTCTTGATC
124987489 TAAACATATTCAAAT
1 TAAACATATTCAAAT
124987504 TAAACATATTCAAA
1 TAAACATATTCAAA
124987518 CATAATTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:124991307 original size:93 final size:93
Alignment explanation
Indices: 124991199--124991369 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
124991189 GCCCCTAAGT
* * * *
124991199 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCATCCGTAAGTGAACTC-GAACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCAG-ACTCAACTCA
124991263 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
124991292 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
124991357 CGAGTTCGGATGC
66 CGAGTTCGGATGC
124991370 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:124991366 original size:46 final size:45
Alignment explanation
Indices: 124991192--124991366 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
124991182 GTAACCCGCC
* * * *
124991192 CCTAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
124991237 CCGTAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
124991287 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
124991330 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
124991367 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 58 0.54
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:124991385 original size:46 final size:44
Alignment explanation
Indices: 124991242--124991385 Score: 109
Period size: 46 Copynumber: 3.1 Consensus size: 44
124991232 TGCATCCGTA
124991242 AGTGAACTCGAACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCG-ACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
124991289 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTC-GACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
124991335 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTC-GACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
124991381 AGTGA
1 AGTGA
124991386 CATGTCACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 22
0.71 0.08 0.20
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.42
47 29 0.38
48 2 0.03
49 3 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:124991823 original size:30 final size:30
Alignment explanation
Indices: 124991789--124991848 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
124991779 ATTTAATACG
124991789 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
124991819 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
124991849 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:124992952 original size:29 final size:28
Alignment explanation
Indices: 124992887--124992976 Score: 135
Period size: 29 Copynumber: 3.1 Consensus size: 28
124992877 CACATACCTG
* *
124992887 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCATTAGGCCCAATTACATT
124992915 TATATGGCCCATTAGGCCCAAATTACATT
1 TATATGGCCCATTAGGCCC-AATTACATT
*
124992944 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAATT-ACATT
124992973 TATA
1 TATA
124992977 GTCATGCTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
28 22 0.39
29 35 0.61
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATTACATT
Found at i:124994922 original size:31 final size:31
Alignment explanation
Indices: 124994854--124994932 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
124994844 TATCAGAACT
* * *
124994854 AGAATCAGAATTAGAATTAGAATCAAGTGAC
1 AGAATCAGAATCAGAATCAGAATCAAGTAAC
* * * *
124994885 AAAATCAGAGTCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAAGTAAC
*
124994916 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
124994933 GGGAATGCAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAAGTAAC
Found at i:124994928 original size:19 final size:18
Alignment explanation
Indices: 124994884--124994930 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
124994874 AATCAAGTGA
124994884 CAAAATCAGAGTCAGAAT
1 CAAAATCAGAGTCAGAAT
**
124994902 CAGTATCAG-GTAACAGAAT
1 CAAAATCAGAGT--CAGAAT
124994921 CAAAATCAGA
1 CAAAATCAGA
124994931 ATGGGAATGC
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
17 2 0.09
18 7 0.32
19 13 0.59
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
CAAAATCAGAGTCAGAAT
Found at i:124995365 original size:27 final size:27
Alignment explanation
Indices: 124995335--124995604 Score: 360
Period size: 27 Copynumber: 10.0 Consensus size: 27
124995325 GGGGCAAAAT
* * * *
124995335 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
124995362 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
124995389 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
124995416 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
124995443 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
124995470 GGTATTTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
124995497 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
124995524 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
124995551 GGTAATTCTACCTTATAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
124995578 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
124995605 AGTACTTTAT
Statistics
Matches: 208, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 208 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:124999200 original size:29 final size:29
Alignment explanation
Indices: 124999139--124999228 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
124999129 CACATACCTG
* *
124999139 TATATGGCCCACTAGGCCC-AATCATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
124999167 TATATGGCCCATTAAGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
124999196 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
124999225 TATA
1 TATA
124999229 GTCATGCTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
28 17 0.31
29 38 0.69
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:124999452 original size:16 final size:16
Alignment explanation
Indices: 124999433--124999475 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
124999423 GTAGTCAAAC
*
124999433 TTTTGGCTTTTCAATA
1 TTTTGGCTTTTCAACA
* *
124999449 TTTTAGCTTTTCAGCA
1 TTTTGGCTTTTCAACA
*
124999465 TTTCGGCTTTT
1 TTTTGGCTTTT
124999476 GCCGATCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (16 bp):
TTTTGGCTTTTCAACA
Found at i:125006139 original size:47 final size:47
Alignment explanation
Indices: 125006070--125006193 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 47
125006060 GCCCCTAAGT
125006070 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
125006117 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
125006162 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
125006194 TCAACCATCC
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
42 3 0.04
43 5 0.07
44 2 0.03
45 29 0.43
47 29 0.43
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:125006645 original size:30 final size:30
Alignment explanation
Indices: 125006611--125006670 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
125006601 ATTTAATACG
125006611 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
125006641 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
125006671 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:125013587 original size:47 final size:47
Alignment explanation
Indices: 125013473--125013642 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
125013463 GCCCCTAAGT
* * * *
125013473 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
125013519 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
125013566 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
125013611 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
125013643 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:125013642 original size:92 final size:93
Alignment explanation
Indices: 125013473--125013642 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
125013463 GCCCCTAAGT
* *
125013473 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
125013538 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
125013566 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
125013630 CGAGTTCGGATGC
66 CGAGTTCGGATGC
125013643 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:125020447 original size:29 final size:29
Alignment explanation
Indices: 125020405--125020555 Score: 196
Period size: 29 Copynumber: 5.2 Consensus size: 29
125020395 TGTGCTAAAT
125020405 GATGGTCGAAACCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
*
125020434 GATGATCGAAACCATTCCC-TTTCATATTC
1 GATGGTCGAAACCA-TCCCTTTTCATATTC
** * * *
125020463 GATGGTCGTCACTATCTCTTTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATATTC
*
125020492 GATGGTCGAAGCCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
** *
125020521 GATGGTCGCCACCATCCTTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCATATTC
125020550 GATGGT
1 GATGGT
125020556 TGTCGATACG
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 3 0.03
29 96 0.93
30 4 0.04
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATATTC
Found at i:125023008 original size:53 final size:54
Alignment explanation
Indices: 125022817--125023037 Score: 169
Period size: 53 Copynumber: 4.1 Consensus size: 54
125022807 AGGGTTTAAG
* * * * * * *
125022817 GATACCAAGTAAGACCATGCCAAGGCATGGCATTAGTAAGTTATACAAGG-AAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCAAA
* * * * * * * * *
125022870 TAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGTAAA
1 -GATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGCAAA
* * * * * *
125022926 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAG
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCAAA
* * *
125022979 GATACCACGTAAGAACATGTCAAGACATGGCAATGGTAAGTT-TAAAAAGCAAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCAAA
*
125023032 GGTACC
1 GATACC
125023038 CTTGACTCCT
Statistics
Matches: 129, Mismatches: 35, Indels: 7
0.75 0.20 0.04
Matches are distributed among these distances:
53 56 0.43
54 32 0.25
55 38 0.29
56 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (54 bp):
GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCAAA
Found at i:125028720 original size:24 final size:24
Alignment explanation
Indices: 125028404--125028718 Score: 549
Period size: 24 Copynumber: 13.1 Consensus size: 24
125028394 GCAAAGACCA
125028404 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028428 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028452 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
125028476 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028500 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028524 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
125028548 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028572 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028596 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
125028620 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
125028644 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
125028668 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
125028692 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
125028716 TAT
1 TAT
125028719 AGTCACATTC
Statistics
Matches: 283, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 283 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:125036595 original size:24 final size:24
Alignment explanation
Indices: 125036484--125036773 Score: 402
Period size: 24 Copynumber: 12.9 Consensus size: 24
125036474 GCAAAGACCA
*
125036484 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
125036508 TAT-GCACTATGTGTGCG---CAC
1 TATGGCACTATGTGTGCGATTCAC
125036528 TAT-GCACTA--TGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
125036549 TAT-GCACTATGTGT-CGATT-AC
1 TATGGCACTATGTGTGCGATTCAC
125036570 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
125036594 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
125036618 TATGGCACTATGTGTGCGATT-AC
1 TATGGCACTATGTGTGCGATTCAC
125036641 TATGGCACTA--TGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
125036663 TAT-GCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
125036686 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
125036710 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
125036734 TAT-GCACTATGT-T--GATT-GC
1 TATGGCACTATGTGTGCGATTCAC
*
125036753 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
125036774 TGCTATAGTC
Statistics
Matches: 247, Mismatches: 3, Indels: 33
0.87 0.01 0.12
Matches are distributed among these distances:
18 6 0.02
19 4 0.02
20 24 0.10
21 33 0.13
22 22 0.09
23 62 0.25
24 96 0.39
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:125036679 original size:92 final size:91
Alignment explanation
Indices: 125036488--125036773 Score: 419
Period size: 92 Copynumber: 3.2 Consensus size: 91
125036478 AGACCATATG
*
125036488 GCACTATGTGTGCGATTTACTAT-GCACTATGTGTGCG---CACTAT-GCACTA--TGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
*
125036546 CACTATGCACTATGTGTCGATTACTATG
66 -ACTATGCACTATGTG-CGATTACTATA
125036574 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
125036639 ACTATGGCACTATGTGCGATTCACTAT-
66 ACTAT-GCACTATGTGCGATT-ACTATA
*
125036666 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-T
* *
125036731 TACTATGCACTATGT-TGATTGCTATA
65 TACTATGCACTATGTGCGATTACTATA
125036757 GCACTATGTGTGCGATT
1 GCACTATGTGTGCGATT
125036774 TGCTATAGTC
Statistics
Matches: 185, Mismatches: 4, Indels: 17
0.90 0.02 0.08
Matches are distributed among these distances:
86 22 0.12
87 14 0.08
90 10 0.05
91 27 0.15
92 81 0.44
93 31 0.17
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (91 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
ACTATGCACTATGTGCGATTACTATA
Found at i:125036716 original size:116 final size:112
Alignment explanation
Indices: 125036484--125036766 Score: 450
Period size: 116 Copynumber: 2.5 Consensus size: 112
125036474 GCAAAGACCA
*
125036484 TATGGCACTATGTGTGCGATTTACTATGCACTATGTGTGCG--CACTATGCACTATGTGCGATTC
1 TATGGCACTATGTGTGCGATTTACTATGCACTATGTGTGCGATTACTATGCACTATGTGCGATTC
125036547 ACTATGCACTATGTGTCGATTACTATGGCACTATGTGTGCGATTCAC
66 ACTATGCACTATGTGTCGATTACTATGGCACTATGTGTGCGATTCAC
*
125036594 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTACTATGGCACTATGTGCGAT
1 TATGGCACTATGTGTGCGATTTACTAT-GCACTATGTGTGCGATTACTAT-GCACTATGTGCGAT
*
125036659 TCACTATGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
64 TCACTATGCACTATGTGT-CGATT-ACTATGGCACTATGTGTGCGATTCAC
*
125036710 TATGGCACTATGTGTGCGATTTACTATGCACTATGT-T--GATTGCTATAGCACTATGTG
1 TATGGCACTATGTGTGCGATTTACTATGCACTATGTGTGCGATTACTAT-GCACTATGTG
125036767 TGCGATTTGC
Statistics
Matches: 161, Mismatches: 6, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
110 26 0.16
111 14 0.09
112 18 0.11
113 5 0.03
114 33 0.20
115 14 0.09
116 51 0.32
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (112 bp):
TATGGCACTATGTGTGCGATTTACTATGCACTATGTGTGCGATTACTATGCACTATGTGCGATTC
ACTATGCACTATGTGTCGATTACTATGGCACTATGTGTGCGATTCAC
Found at i:125040755 original size:30 final size:29
Alignment explanation
Indices: 125040661--125040762 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
125040651 TATAGTGAAT
* * *
125040661 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
125040690 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
125040718 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
125040748 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
125040763 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:125048601 original size:30 final size:29
Alignment explanation
Indices: 125048507--125048608 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
125048497 TATAGTGAAT
* * *
125048507 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
125048536 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
125048564 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
125048594 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
125048609 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:125057749 original size:28 final size:28
Alignment explanation
Indices: 125057717--125057815 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
125057707 GCAATAAGCC
*
125057717 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
125057745 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
125057773 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
125057802 CGCACACTTAGTGC
1 CGCACACTTAGTGC
125057816 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:125070803 original size:17 final size:17
Alignment explanation
Indices: 125070777--125070826 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
125070767 TTTTGAATTA
*
125070777 GTAATAAAGTTAAATAG
1 GTAATTAAGTTAAATAG
125070794 GTAATTAAG-TAAATAAG
1 GTAATTAAGTTAAAT-AG
*
125070811 GTTAA-TAAATTAAATA
1 G-TAATTAAGTTAAATA
125070827 AAACACAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 5 0.18
17 15 0.54
18 8 0.29
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.32
Consensus pattern (17 bp):
GTAATTAAGTTAAATAG
Found at i:125071237 original size:29 final size:28
Alignment explanation
Indices: 125071195--125071250 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
125071185 GGGGATACAT
125071195 TGATTCGGCTTCGGGCCATGAATATCAGC
1 TGATTCGGCTTCGGGCCATG-ATATCAGC
*
125071224 TGATTTGGCTTCGGGCCATGATATCAG
1 TGATTCGGCTTCGGGCCATGATATCAG
125071251 TATTTTGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (28 bp):
TGATTCGGCTTCGGGCCATGATATCAGC
Found at i:125071297 original size:48 final size:48
Alignment explanation
Indices: 125071226--125071328 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 48
125071216 ATATCAGCTG
*
125071226 ATTTGGCTTCGGGCCATGATATCAGTATTTTGGATATAAGTTACCTTA
1 ATTTGGCCTCGGGCCATGATATCAGTATTTTGGATATAAGTTACCTTA
*
125071274 ATTTGGCCTCGGGCCATGATATCAGTATTTTGGATATAAGTTACCTTG
1 ATTTGGCCTCGGGCCATGATATCAGTATTTTGGATATAAGTTACCTTA
125071322 ATTTGGC
1 ATTTGGC
125071329 TTCAGGCTGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (48 bp):
ATTTGGCCTCGGGCCATGATATCAGTATTTTGGATATAAGTTACCTTA
Found at i:125074921 original size:11 final size:11
Alignment explanation
Indices: 125074894--125074933 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
125074884 ATTAAAATTT
125074894 TTAATTTTA-A
1 TTAATTTTATA
125074904 TTAATTTTATA
1 TTAATTTTATA
* *
125074915 ATAATTTTTTA
1 TTAATTTTATA
125074926 TTAATTTT
1 TTAATTTT
125074934 GATCATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTAATTTTATA
Found at i:125081890 original size:13 final size:13
Alignment explanation
Indices: 125081872--125081896 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125081862 GTAAGTGATT
125081872 TTGATGATTTTTC
1 TTGATGATTTTTC
125081885 TTGATGATTTTT
1 TTGATGATTTTT
125081897 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:125082625 original size:46 final size:47
Alignment explanation
Indices: 125082572--125082881 Score: 193
Period size: 47 Copynumber: 6.6 Consensus size: 47
125082562 ATTGTGAGCT
125082572 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CATTATGATAGCC
* * *
125082618 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATT---ATGATAGCC
* * *
125082666 AGTGTAAGA-TATATCTGGGACA-AGCATCGG-CC-TTGA-GACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATT-ATGA--T-AGCC
* * *
125082712 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTGCGA-GATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC--CCATTATGATAGCC
* * ** * *
125082756 AGTGTAAGACCATCTCTAGGACATGGTGTCGGCCTCAATGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-C-ATTATGATAGCC
** ** *
125082805 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGA-GAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CCATTATGAT-AGCC
*
125082852 AGGGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
125082882 AGCATTCTAC
Statistics
Matches: 212, Mismatches: 28, Indels: 47
0.74 0.10 0.16
Matches are distributed among these distances:
43 2 0.01
44 14 0.07
45 16 0.08
46 58 0.27
47 65 0.31
48 25 0.12
49 32 0.15
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATTATGATAGCC
Done.