Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 407 of 770
Found at i:125082824 original size:140 final size:140
Alignment explanation
Indices: 125082572--125082881 Score: 324
Period size: 140 Copynumber: 2.2 Consensus size: 140
125082562 ATTGTGAGCT
* * *
125082572 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAGCCAGTGTAAGACCATCTCTAG
** * **
125082637 GACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGATATATCTGGGACA-AGCATCGGCCTTG
66 GACATGGCATCGGCATCAAGACGAGAGCTAGTGTAAGACATATCTGGGACATAGCATC-AACTTG
*
125082701 AGACGTAAGCC
130 AGACATAAGCC
** *
125082712 AGTGTAAGACATGTCTGGGACATGCATCGGCTGCGA-GATG-T-GTCAGTGTAAGACCATCTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGATAGCCAGTGTAAGACCATCTCTA
** * * * * *
125082774 GGACATGGTGTCGGCCTCAATGATGATAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAAC
65 GGACATGGCATCGGCATCAA-GACGAGAGCT-AGTGTAAGA-CATATCTGGGACATAGCATCAAC
* *
125082838 TTGAGATATGAGCC
127 TTGAGACATAAGCC
*
125082852 AGGGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
125082882 AGCATTCTAC
Statistics
Matches: 141, Mismatches: 22, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
138 34 0.24
139 16 0.11
140 66 0.47
141 20 0.14
142 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAGCCAGTGTAAGACCATCTCTAG
GACATGGCATCGGCATCAAGACGAGAGCTAGTGTAAGACATATCTGGGACATAGCATCAACTTGA
GACATAAGCC
Found at i:125084060 original size:22 final size:21
Alignment explanation
Indices: 125084035--125084075 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
125084025 TCGAATTGGT
125084035 CACAAGGGCATGTTGCCCCTTC
1 CACAAGGGCATG-TGCCCCTTC
* *
125084057 CACATGGGCGTGTGCCCCT
1 CACAAGGGCATGTGCCCCT
125084076 ATGTTTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.15, C:0.37, G:0.27, T:0.22
Consensus pattern (21 bp):
CACAAGGGCATGTGCCCCTTC
Found at i:125090281 original size:46 final size:47
Alignment explanation
Indices: 125090228--125090485 Score: 210
Period size: 46 Copynumber: 5.5 Consensus size: 47
125090218 ATTGTGAGCT
**
125090228 AGTGTAAGACATGTCTAAGACATGCATCGGCCAC-ATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGATAGCC
* * * * * *
125090274 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGATTATGATAGCC
** * * *
125090322 AGTGTAAGACATGTCTAAGACATGCATCGGCCTCGA-GACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGAT-AGCC
* *
125090368 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-T-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGATAGCC
* * **
125090412 AGTGTAAGACCATGTCTGGGACATGGTATCGGCCTCGATGT-TGATAGTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAT-TATGATAGCC
125090461 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
125090486 GCGTTGACTT
Statistics
Matches: 173, Mismatches: 26, Indels: 24
0.78 0.12 0.11
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 70 0.40
47 29 0.17
48 24 0.14
49 24 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATTATGATAGCC
Found at i:125090484 original size:140 final size:140
Alignment explanation
Indices: 125090228--125090540 Score: 346
Period size: 140 Copynumber: 2.2 Consensus size: 140
125090218 ATTGTGAGCT
** *
125090228 AGTGTAAGACATGTCTAAGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAGCCAGTGTAAGACCATGTCTGG
* *
125090293 GACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTAAGACAT-GCATCGGCCTCG
66 GACATGGCATCAGCATCGAGACGAGAGCTAGTGTAAGACATGTCTAAGACATGGCAT-GGACTCG
*
125090357 AGACGTAAGCC
130 AGACATAAGCC
*
125090368 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-T-GCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGATAGCCAGTGTAAGACCATGTCTG
* * * ** * * ** * *
125090430 GGACATGGTATCGGCCTCGATGTTGATAGTTAGTGTAAGACTATGTCTGGGACATGGCGTTGACT
65 GGACATGGCATCAGCATCGA-GACGAGAGCTAGTGTAAGAC-ATGTCTAAGACATGGCATGGACT
* * *
125090495 TGAGATATGAGCC
128 CGAGACATAAGCC
*
125090508 ATTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
125090541 ATTCTACCCC
Statistics
Matches: 145, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
138 37 0.26
139 17 0.12
140 65 0.45
141 18 0.12
142 8 0.06
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATCGAGACGAGAGCTAGTGTAAGACATGTCTAAGACATGGCATGGACTCGA
GACATAAGCC
Found at i:125090528 original size:96 final size:93
Alignment explanation
Indices: 125090222--125090540 Score: 264
Period size: 94 Copynumber: 3.4 Consensus size: 93
125090212 TGGGTTATTG
* ** * **
125090222 TGAGCTAGTGTAAGA-CATGTCTAAGACAT-GCATCGGCCAC-AT-TATGATAGCCAGTGTAAGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGT-TGATAGTTAGTGTAAGA
*
125090283 CCATGTCTGGGACATGGCATCAGCATTGA-GACGA
65 -CATGTCTGGGACAT-GCATC-G-ACT-ACGA-GA
* ** ** **
125090317 -GAGCTAGTGTAAGA-CATGTCTAAGACAT-GCATCGGCCTCGA-GACG-TAAGCCAGTGTAAGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGTTGAT-AGTTAGTGTAAGA
*
125090377 CATGTCTGGGACATGCATCGGCTACGAGA
65 CATGTCTGGGACATGCATCGACTACGAGA
* *
125090406 TGTGCCAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTCGATGTTGATAGTTAGTGTAAGAC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGTTGATAGTTAGTGTAAGAC
* * *
125090471 TATGTCTGGGACATGGCGTTGACTTGA-GATA
66 -ATGTCTGGGACAT-GCATCGAC-T-ACGAGA
*
125090502 TGAGCCATTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
125090541 ATTCTACCCC
Statistics
Matches: 190, Mismatches: 21, Indels: 25
0.81 0.09 0.11
Matches are distributed among these distances:
89 3 0.02
90 15 0.08
91 13 0.07
92 17 0.09
93 29 0.15
94 66 0.35
95 6 0.03
96 40 0.21
97 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGTTGATAGTTAGTGTAAGAC
ATGTCTGGGACATGCATCGACTACGAGA
Found at i:125094878 original size:40 final size:40
Alignment explanation
Indices: 125094833--125094999 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
125094823 CGGAATATAA
125094833 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
125094873 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
125094913 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
125094953 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
125094992 CCGGATAT
1 CCGGATAT
125095000 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:125102755 original size:40 final size:40
Alignment explanation
Indices: 125102710--125102876 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
125102700 CGGAATATAA
125102710 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
125102750 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
125102790 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
125102830 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
125102869 CCGGATAT
1 CCGGATAT
125102877 CATTCATTTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:125102860 original size:80 final size:79
Alignment explanation
Indices: 125102710--125102876 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
125102700 CGGAATATAA
* *
125102710 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
125102775 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
125102790 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
125102852 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
125102869 CCGGATAT
1 CCGGATAT
125102877 CATTCATTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:125102938 original size:18 final size:18
Alignment explanation
Indices: 125102894--125102955 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
125102884 TTTCATCATA
*
125102894 CATACACATATCAATAAT
1 CATACACACATCAATAAT
*
125102912 CAT-CAACACAT-ACATACT
1 CATAC-ACACATCA-ATAAT
125102930 CATACACACATCAATAAT
1 CATACACACATCAATAAT
125102948 CATACACA
1 CATACACA
125102956 TAATTCAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 2 0.05
18 33 0.89
19 2 0.05
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (18 bp):
CATACACACATCAATAAT
Found at i:125106874 original size:21 final size:21
Alignment explanation
Indices: 125106844--125106932 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
125106834 CTCACAAAGA
* *
125106844 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
125106864 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
125106885 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
125106906 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
125106930 AAA
1 AAA
125106933 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:125106925 original size:24 final size:21
Alignment explanation
Indices: 125106844--125106912 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
125106834 CTCACAAAGA
* * *
125106844 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
125106864 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
125106885 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
125106906 AAAAAGA
1 AAAAAGA
125106913 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:125111098 original size:14 final size:14
Alignment explanation
Indices: 125111079--125111107 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
125111069 TACAATATAT
125111079 ATAAGAATTATACG
1 ATAAGAATTATACG
125111093 ATAAGAATTATACG
1 ATAAGAATTATACG
125111107 A
1 A
125111108 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:125116817 original size:16 final size:16
Alignment explanation
Indices: 125116792--125116824 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
125116782 ACGGTATTCT
*
125116792 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
125116808 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
125116824 A
1 A
125116825 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:125117322 original size:15 final size:15
Alignment explanation
Indices: 125117289--125117322 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
125117279 AGTTATGTCT
*
125117289 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
125117304 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
125117319 ATGT
1 ATGT
125117323 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:125118344 original size:19 final size:19
Alignment explanation
Indices: 125118322--125118361 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
125118312 TTAAACTTTT
* *
125118322 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
125118341 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
125118360 AT
1 AT
125118362 AAAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:125120068 original size:14 final size:14
Alignment explanation
Indices: 125120049--125120077 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
125120039 CTTTTTACTT
125120049 TGTTATATAGATTA
1 TGTTATATAGATTA
125120063 TGTTATATAGATTA
1 TGTTATATAGATTA
125120077 T
1 T
125120078 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:125120226 original size:21 final size:21
Alignment explanation
Indices: 125120202--125120241 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
125120192 TTTATCAGTA
*
125120202 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
125120223 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
125120242 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:125120841 original size:11 final size:11
Alignment explanation
Indices: 125120825--125120849 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
125120815 CTTTATATTT
125120825 ATATACAATAA
1 ATATACAATAA
125120836 ATATACAATAA
1 ATATACAATAA
125120847 ATA
1 ATA
125120850 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:125121544 original size:14 final size:15
Alignment explanation
Indices: 125121513--125121552 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
125121503 TATCTTTATC
125121513 TTATTTATATTCTATT
1 TTATTTAT-TTCTATT
125121529 TTATTTATTTCT-TT
1 TTATTTATTTCTATT
*
125121543 TTTTTTATTT
1 TTATTTATTT
125121553 ATCCATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.48
15 4 0.17
16 8 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TTATTTATTTCTATT
Found at i:125126237 original size:23 final size:23
Alignment explanation
Indices: 125126207--125126252 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
125126197 TATATTTTGA
125126207 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
125126230 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
125126253 CTAATATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTCGTATATAACTAGTCAATAT
Found at i:125126812 original size:14 final size:14
Alignment explanation
Indices: 125126793--125126820 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
125126783 TCAAGATAAA
125126793 GATAATATTGATCG
1 GATAATATTGATCG
125126807 GATAATATTGATCG
1 GATAATATTGATCG
125126821 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:125128021 original size:29 final size:29
Alignment explanation
Indices: 125127979--125128036 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
125127969 TATTAACCGA
125127979 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
125128008 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
125128037 AATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
TTCCATAGATCTATGTAGTTCCAAAAAAG
Found at i:125144108 original size:15 final size:15
Alignment explanation
Indices: 125144088--125144130 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
125144078 TATTAGAAAT
125144088 AAATAGATATTATAA
1 AAATAGATATTATAA
125144103 AAATAGA-A--AT--
1 AAATAGATATTATAA
125144113 AAATAGATATTATAA
1 AAATAGATATTATAA
125144128 AAA
1 AAA
125144131 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:125144109 original size:25 final size:25
Alignment explanation
Indices: 125144081--125144130 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
125144071 AAATATTTAT
125144081 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
125144106 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
125144131 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:125149443 original size:31 final size:33
Alignment explanation
Indices: 125149380--125149453 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
125149370 AAAATGAAAA
* *
125149380 TAAATTAATAATTTATTTTAATTATACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
*
125149413 TAAATTATTAATTT-TTCTATTTA-ACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
125149444 TAAA-TATTAA
1 TAAATTATTAA
125149454 ATAATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.16
31 12 0.32
32 7 0.18
33 13 0.34
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (33 bp):
TAAATTATTAATTTATTCTAATTATACTTAAAT
Found at i:125149459 original size:10 final size:10
Alignment explanation
Indices: 125149446--125149665 Score: 97
Period size: 11 Copynumber: 21.4 Consensus size: 10
125149436 ACTTAAATTA
*
125149446 AATATTAAAT
1 AATAATAAAT
125149456 AATAATAAAT
1 AATAATAAAT
** *
125149466 TCTAAATATACT
1 AAT-AATA-AAT
125149478 AA-ATATAAAT
1 AATA-ATAAAT
125149488 AATAACTAAAT
1 AATAA-TAAAT
125149499 AATAACTAAAT
1 AATAA-TAAAT
125149510 AGA-AAT--A-
1 A-ATAATAAAT
125149517 AA-AATAAAT
1 AATAATAAAT
125149526 AATAACTAAAT
1 AATAA-TAAAT
125149537 AGA-AATAAAAT
1 A-ATAAT-AAAT
125149548 AATAACTAAAT
1 AATAA-TAAAT
125149559 AGA-AATAAA-
1 A-ATAATAAAT
*
125149568 AAT-ATATAT
1 AATAATAAAT
* *
125149577 AAAAATATAT
1 AATAATAAAT
125149587 -ATAAT-AAT
1 AATAATAAAT
125149595 AATATATAAA-
1 AATA-ATAAAT
*
125149605 AATAATATAT
1 AATAATAAAT
*
125149615 AAATTATAAAT
1 -AATAATAAAT
125149626 AGATAATATAAT
1 A-ATAATA-AAT
125149638 AATAGATAGAAT
1 AATA-ATA-AAT
125149650 AATAAAATAAAT
1 AAT--AATAAAT
125149662 AATA
1 AATA
125149666 TAGAAATATA
Statistics
Matches: 165, Mismatches: 16, Indels: 58
0.69 0.07 0.24
Matches are distributed among these distances:
6 4 0.02
7 1 0.01
8 9 0.05
9 16 0.10
10 39 0.24
11 67 0.41
12 25 0.15
13 3 0.02
14 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:125149579 original size:22 final size:24
Alignment explanation
Indices: 125149495--125149575 Score: 114
Period size: 22 Copynumber: 3.4 Consensus size: 24
125149485 AATAATAACT
125149495 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
125149518 AAATAAATAATAACTAAATAGAAAT-A
1 AAAT--AT-ATAACTAAATAGAAATAA
125149544 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
125149567 AAATATATA
1 AAATATATA
125149576 TAAAAATATA
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
22 16 0.31
23 10 0.19
24 4 0.08
25 1 0.02
26 5 0.10
27 16 0.31
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (24 bp):
AAATATATAACTAAATAGAAATAA
Found at i:125149584 original size:12 final size:13
Alignment explanation
Indices: 125149563--125149617 Score: 87
Period size: 13 Copynumber: 4.4 Consensus size: 13
125149553 CTAAATAGAA
125149563 ATAAAAAT-ATAT
1 ATAAAAATAATAT
125149575 ATAAAAAT-ATAT
1 ATAAAAATAATAT
*
125149587 ATAATAATAATAT
1 ATAAAAATAATAT
125149600 ATAAAAATAATAT
1 ATAAAAATAATAT
125149613 ATAAA
1 ATAAA
125149618 TTATAAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 19 0.47
13 21 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAAAAATAATAT
Found at i:125149598 original size:15 final size:15
Alignment explanation
Indices: 125149569--125149665 Score: 78
Period size: 15 Copynumber: 6.7 Consensus size: 15
125149559 AGAAATAAAA
*
125149569 ATATAT-ATAAAAAT
1 ATATATAATAATAAT
125149583 ATATATAATAATAAT
1 ATATATAATAATAAT
125149598 ATATA-AA-AATAAT
1 ATATATAATAATAAT
*
125149611 ATATA-AATTATAA-
1 ATATATAATAATAAT
*
125149624 ATAGATAATATAATAAT
1 ATATAT-A-ATAATAAT
* * *
125149641 AGATAGAATAATAAA
1 ATATATAATAATAAT
*
125149656 ATAAATAATA
1 ATATATAATA
125149666 TAGAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
13 17 0.26
14 12 0.18
15 27 0.41
16 7 0.11
17 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAATAATAAT
Found at i:125149608 original size:43 final size:42
Alignment explanation
Indices: 125149512--125149675 Score: 118
Period size: 43 Copynumber: 3.7 Consensus size: 42
125149502 AACTAAATAG
* * * * *
125149512 AAATAAAAATAAATAATAA-CTAAATAGAAATAAAATAATAACT
1 AAATAAAAATAAA-AATAATATAAAAATATATATAATAATAA-T
*
125149555 AAATAGAAATAAAAATATATATAAAAATATATATAATAATAAT
1 AAATAAAAATAAAAATA-ATATAAAAATATATATAATAATAAT
* *
125149598 ATATAAAAATAATATATAAATTATAAATAGATA-ATATAATAATAGAT
1 AAATAAAAATAA-AAAT-AA-TATAAA-A-ATATATATAATAATA-AT
* *
125149645 AGAATAATAAA-ATAAATAATATAGAAATATA
1 A-AATAA-AAATAAAAATAATATAAAAATATA
125149676 GATTTATAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
42 4 0.04
43 27 0.28
44 23 0.24
45 12 0.12
46 14 0.14
47 9 0.09
48 5 0.05
49 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATAAAAATAAAAATAATATAAAAATATATATAATAATAAT
Found at i:125149608 original size:49 final size:50
Alignment explanation
Indices: 125149471--125149667 Score: 139
Period size: 49 Copynumber: 4.0 Consensus size: 50
125149461 TAAATTCTAA
* *
125149471 ATATACTAAATATAAATAATAACTAA-ATAATAACTAAATAGAAATAAAAATA-
1 ATATAATAAATATATATAATAA-TAATAT-ATAAC-AAATA-AAATAAAAATAT
* * *
125149523 A-ATAATAACTAAATAGAAATAA-AATA-ATAACTAAATAGAAATAAAAATAT
1 ATATAATAAATATATA-TAATAATAATATATAAC-AAATA-AAATAAAAATAT
* *
125149573 ATATAA-AAATATATATAATAATAATATATAA-AAATAATATATAAAT-T
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
* * * *
125149620 ATA-AATAGATA-ATATAATAAT-AGATAGAA-TAATAAAATAAATAATAT
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAA-AATAT
125149667 A
1 A
125149668 GAAATATAGA
Statistics
Matches: 120, Mismatches: 16, Indels: 23
0.75 0.10 0.14
Matches are distributed among these distances:
45 15 0.12
46 15 0.12
47 10 0.08
48 8 0.07
49 33 0.28
50 14 0.12
51 19 0.16
52 6 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (50 bp):
ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
Found at i:125149636 original size:20 final size:20
Alignment explanation
Indices: 125149611--125149714 Score: 62
Period size: 20 Copynumber: 5.4 Consensus size: 20
125149601 TAAAAATAAT
125149611 ATATAAATTATAAATAGATA
1 ATATAAATTATAAATAGATA
* *
125149631 ATAT-AATAATAGATAGAATA
1 ATATAAATTATAAATAG-ATA
*
125149651 ATA-AAATAAATAATATAGA-A
1 ATATAAAT-TATAA-ATAGATA
* *
125149671 ATATAGATTTATAAATCGA-A
1 ATATA-AATTATAAATAGATA
*
125149691 ATAT--ATTA-ATATA-ATA
1 ATATAAATTATAAATAGATA
125149707 ATATAAAT
1 ATATAAAT
125149715 ATTATTAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 20
0.69 0.09 0.21
Matches are distributed among these distances:
15 1 0.02
16 8 0.12
17 3 0.05
18 2 0.03
19 10 0.15
20 26 0.39
21 10 0.15
22 6 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (20 bp):
ATATAAATTATAAATAGATA
Found at i:125149672 original size:15 final size:14
Alignment explanation
Indices: 125149513--125149673 Score: 55
Period size: 13 Copynumber: 11.8 Consensus size: 14
125149503 ACTAAATAGA
125149513 AATA-AAAATAAAT
1 AATATAAAATAAAT
*
125149526 AATAACTAAATAGAAAT
1 AAT-A-TAAA-ATAAAT
* *
125149543 AA-A-ATAATAACT
1 AATATAAAATAAAT
125149555 AA-ATAGAAATAAA-
1 AATATA-AAATAAAT
125149568 AATATATATAA-AAAT
1 AATATA-A-AATAAAT
*
125149583 -ATATATAAT-AAT
1 AATATAAAATAAAT
*
125149595 AATATATAA-AAAT
1 AATATAAAATAAAT
125149608 AATAT---ATAAAT
1 AATATAAAATAAAT
*
125149619 --TAT-AAATAGAT
1 AATATAAAATAAAT
*
125149630 AATATAATAATAGATAG
1 AATATAA-AATA-A-AT
125149647 AATAATAAAATAAAT
1 AAT-ATAAAATAAAT
125149662 AATATAGAAATA
1 AATATA-AAATA
125149674 TAGATTTATA
Statistics
Matches: 113, Mismatches: 12, Indels: 44
0.67 0.07 0.26
Matches are distributed among these distances:
9 3 0.03
10 1 0.01
11 9 0.08
12 12 0.11
13 27 0.24
14 22 0.19
15 16 0.14
16 4 0.04
17 15 0.13
18 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (14 bp):
AATATAAAATAAAT
Found at i:125149720 original size:23 final size:23
Alignment explanation
Indices: 125149689--125149772 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 23
125149679 TTATAAATCG
125149689 AAATA-TATTAATATAATAATAT
1 AAATATTATTAATATAATAATAT
* *
125149711 AAATATTATTAATTACTTAATATTCT
1 AAATATTATTAA-TA--TAATAATAT
* * *
125149737 TAATATTAATAACA-AATAATAT
1 AAATATTATTAATATAATAATAT
*
125149759 AAATTAATATTAAT
1 AAA-TATTATTAAT
125149773 TGCTAATAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
22 13 0.28
23 13 0.28
24 2 0.04
25 1 0.02
26 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATTATTAATATAATAATAT
Found at i:125149780 original size:26 final size:26
Alignment explanation
Indices: 125149693--125149781 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
125149683 AAATCGAAAT
125149693 ATATTAA-TA-TAATAATATAAA-TA
1 ATATTAATTACTAATAATATAAATTA
* **
125149716 TTATTAATTACT--TAATAT-TCTTA
1 ATATTAATTACTAATAATATAAATTA
* *
125149739 ATATTAATAACAAATAATATAAATTA
1 ATATTAATTACTAATAATATAAATTA
*
125149765 ATATTAATTGCTAATAA
1 ATATTAATTACTAATAA
125149782 CTTGTAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
23 23 0.47
24 2 0.04
25 7 0.14
26 17 0.35
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATATTAATTACTAATAATATAAATTA
Found at i:125155421 original size:15 final size:15
Alignment explanation
Indices: 125155403--125155433 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
125155393 ATCTCTCATC
125155403 TATCTATCTATTTTT
1 TATCTATCTATTTTT
125155418 TATCTATCTATTTTT
1 TATCTATCTATTTTT
125155433 T
1 T
125155434 CTTTAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
TATCTATCTATTTTT
Found at i:125156134 original size:16 final size:17
Alignment explanation
Indices: 125156107--125156140 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
125156097 AAATGGATTT
125156107 AATAGAAATTAAATAGA
1 AATAGAAATTAAATAGA
125156124 AATAG-AATTAAATAGA
1 AATAGAAATTAAATAGA
125156140 A
1 A
125156141 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAAATTAAATAGA
Found at i:125157070 original size:15 final size:15
Alignment explanation
Indices: 125157041--125157102 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
125157031 GTAGAAAGCC
* *
125157041 TATTTTTTTTTCTAG
1 TATTTTATTTACTAG
125157056 TATTTTATTTACTAG
1 TATTTTATTTACTAG
**
125157071 CGTGTTTATTTACTAGCG
1 TAT-TTTATTTACTA--G
125157089 TA-TTTATTTACTAG
1 TATTTTATTTACTAG
125157103 CGTATTTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 22 0.58
18 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (15 bp):
TATTTTATTTACTAG
Found at i:125157080 original size:16 final size:16
Alignment explanation
Indices: 125157059--125157109 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
125157049 TTTCTAGTAT
*
125157059 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
125157075 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
125157091 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
125157107 TTT
1 TTT
125157110 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:125158460 original size:13 final size:14
Alignment explanation
Indices: 125158427--125158460 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
125158417 GCCCGGAGGC
*
125158427 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
125158441 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
125158455 TGAAAA
1 T-AAAA
125158461 GTTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:125159744 original size:9 final size:9
Alignment explanation
Indices: 125159730--125159818 Score: 57
Period size: 9 Copynumber: 10.3 Consensus size: 9
125159720 AGAAATAAAT
125159730 ATATATATA
1 ATATATATA
125159739 ATATATA-A
1 ATATATATA
*
125159747 AAATAATATTA
1 ATAT-ATA-TA
125159758 ATATATA-A
1 ATATATATA
125159766 ATATA-A-A
1 ATATATATA
125159773 A-ATATATA
1 ATATATATA
* *
125159781 AAATATTTA
1 ATATATATA
125159790 GATATA-A-A
1 -ATATATATA
* *
125159798 ATATTTAGA
1 ATATATATA
125159807 ATATATATA
1 ATATATATA
125159816 ATA
1 ATA
125159819 AAATAGATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
6 3 0.05
7 8 0.13
8 14 0.22
9 27 0.43
10 7 0.11
11 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
ATATATATA
Found at i:125159759 original size:19 final size:19
Alignment explanation
Indices: 125159726--125159783 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
125159716 AAATAGAAAT
125159726 AAATATATATATAATATATAA
1 AAATA-ATAT-TAATATATAA
125159747 AAATAATATTAATATATAA
1 AAATAATATTAATATATAA
*
125159766 ATATAA-A--AATATATAA
1 AAATAATATTAATATATAA
125159782 AA
1 AA
125159784 TATTTAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 10 0.29
18 1 0.03
19 15 0.43
20 4 0.11
21 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAATATTAATATATAA
Found at i:125159770 original size:34 final size:35
Alignment explanation
Indices: 125159699--125159840 Score: 109
Period size: 34 Copynumber: 4.1 Consensus size: 35
125159689 TTTTGTATTG
* * * *
125159699 TATATAATGTATACAAAA-A-ATAGAAATAAATATA
1 TATATAATATATA-AAAATAGATATAAATATATAAA
*
125159733 TATATAATATATAAAAATA-ATATTAATATATAAA
1 TATATAATATATAAAAATAGATATAAATATATAAA
* *
125159767 TATAAAAATATATAAAATATTTAGATATAAAATATTTAGAA
1 TAT-ATAATATATAAAA-A--TAGATAT-AAATATATA-AA
125159808 TATAT-ATA-AT-AAAATAGATAT-AATATATAAA
1 TATATAATATATAAAAATAGATATAAATATATAAA
125159839 TA
1 TA
125159841 AATTGAATAT
Statistics
Matches: 90, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
31 4 0.04
32 7 0.08
33 4 0.04
34 34 0.38
35 12 0.13
36 2 0.02
37 3 0.03
38 4 0.04
39 7 0.08
40 8 0.09
41 5 0.06
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (35 bp):
TATATAATATATAAAAATAGATATAAATATATAAA
Found at i:125159785 original size:25 final size:24
Alignment explanation
Indices: 125159722--125159840 Score: 109
Period size: 24 Copynumber: 4.9 Consensus size: 24
125159712 CAAAAAATAG
*
125159722 AAATAAATAT-ATATATAATATATA
1 AAATATATATAATATATAA-ATATA
125159746 AAA-ATAATATTAATATATAAATATAA
1 AAATAT-ATA-TAATATATAAATAT-A
* * *
125159772 AAATATATAAAATATTTAGATATA
1 AAATATATATAATATATAAATATA
* * *
125159796 AAATATTTAGAATATATATA-ATA
1 AAATATATATAATATATAAATATA
*
125159819 AAATAGATATAATATATAAATA
1 AAATATATATAATATATAAATA
125159841 AATTGAATAT
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
23 20 0.26
24 24 0.31
25 16 0.21
26 15 0.19
27 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
AAATATATATAATATATAAATATA
Found at i:125159796 original size:15 final size:16
Alignment explanation
Indices: 125159776--125159811 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
125159766 ATATAAAAAT
125159776 ATATAAAATATTTAG-
1 ATATAAAATATTTAGA
125159791 ATATAAAATATTTAGA
1 ATATAAAATATTTAGA
125159807 ATATA
1 ATATA
125159812 TATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATAAAATATTTAGA
Found at i:125159850 original size:22 final size:22
Alignment explanation
Indices: 125159722--125159861 Score: 85
Period size: 23 Copynumber: 6.2 Consensus size: 22
125159712 CAAAAAATAG
*
125159722 AAATAAATATATATATAATATAT
1 AAATAAA-ATAGATATAATATAT
125159745 --A-AAAATA-ATATTAATATAT
1 AAATAAAATAGATA-TAATATAT
* * *
125159764 AAATATAAAAATATATAAAATATTT
1 -AA-AT-AAAATAGATATAATATAT
** *
125159789 AGATATAAAATATTTAGAATATAT
1 A-A-ATAAAATAGATATAATATAT
125159813 ATAATAAAATAGATATAATATAT
1 A-AATAAAATAGATATAATATAT
*
125159836 AAAT-AAATTGAATATAATAT-T
1 AAATAAAATAG-ATATAATATAT
125159857 AAATA
1 AAATA
125159862 GATAAATAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
18 3 0.03
19 11 0.11
20 3 0.03
21 11 0.11
22 12 0.12
23 19 0.20
24 18 0.19
25 16 0.17
26 3 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
AAATAAAATAGATATAATATAT
Found at i:125160267 original size:13 final size:13
Alignment explanation
Indices: 125160249--125160275 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
125160239 GTTATTCATA
125160249 ATTAATATGAATT
1 ATTAATATGAATT
125160262 ATTAATATGAATT
1 ATTAATATGAATT
125160275 A
1 A
125160276 GAGACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:125160462 original size:21 final size:21
Alignment explanation
Indices: 125160438--125160477 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
125160428 ATTAAAATTT
125160438 TATATATATTTAT-TATTTATC
1 TATATAT-TTTATATATTTATC
125160459 TATATATTTTATATATTTA
1 TATATATTTTATATATTTA
125160478 ATATATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TATATATTTTATATATTTATC
Found at i:125160482 original size:11 final size:9
Alignment explanation
Indices: 125160434--125160495 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
125160424 TTAAATTAAA
125160434 ATTTTATAT
1 ATTTTATAT
125160443 ATATTTAT-T
1 AT-TTTATAT
125160452 ATTTATCTATAT
1 A-TT-T-TATAT
125160464 ATTTTATAT
1 ATTTTATAT
*
125160473 ATTTAATAT
1 ATTTTATAT
*
125160482 ATTTAATAT
1 ATTTTATAT
*
125160491 CTTTT
1 ATTTT
125160496 TTTATATCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
9 30 0.67
10 8 0.18
11 5 0.11
12 2 0.04
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (9 bp):
ATTTTATAT
Found at i:125160486 original size:17 final size:18
Alignment explanation
Indices: 125160436--125160490 Score: 62
Period size: 17 Copynumber: 3.1 Consensus size: 18
125160426 AAATTAAAAT
125160436 TTTATATATATTTAT-TA
1 TTTATATATATTTATATA
125160453 TTTATCTATATATTTTATATA
1 TTTA--TATATA-TTTATATA
125160474 TTTA-ATATATTTA-ATA
1 TTTATATATATTTATATA
125160490 T
1 T
125160491 CTTTTTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.12
17 8 0.24
18 5 0.15
19 6 0.18
20 5 0.15
21 6 0.18
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATATATTTATATA
Found at i:125160582 original size:17 final size:17
Alignment explanation
Indices: 125160560--125160598 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
125160550 CTGACTCCAT
*
125160560 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
125160577 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
125160594 TTTTA
1 TTTTA
125160599 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:125160764 original size:15 final size:17
Alignment explanation
Indices: 125160734--125160765 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
125160724 GTCAAAATCT
125160734 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
125160751 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
125160766 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:125161415 original size:18 final size:18
Alignment explanation
Indices: 125161388--125161430 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
125161378 CGCATAAAAA
* *
125161388 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
125161406 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
125161424 GAAAGAA
1 GAAAGAA
125161431 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:125166171 original size:15 final size:15
Alignment explanation
Indices: 125166151--125166181 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
125166141 GACGGTTCCG
125166151 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
125166166 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
125166181 T
1 T
125166182 ACTGATACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.19, T:0.48
Consensus pattern (15 bp):
TGTGCTCTGATTCAT
Found at i:125170575 original size:15 final size:15
Alignment explanation
Indices: 125170519--125170587 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
125170509 AAGAAAAAGC
125170519 GAATAAA-AAATCCA
1 GAATAAAGAAATCCA
* * *
125170533 -AGATAGAGAAACCCG
1 GA-ATAAAGAAATCCA
125170548 GAAT-AAGAAATCCA
1 GAATAAAGAAATCCA
*
125170562 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
125170577 GGATAAAGAAA
1 GAATAAAGAAA
125170588 CCCAAGATAC
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
13 1 0.02
14 15 0.36
15 25 0.60
16 1 0.02
ACGTcount: A:0.57, C:0.13, G:0.19, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:125170596 original size:15 final size:15
Alignment explanation
Indices: 125170521--125170596 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
125170511 GAAAAAGCGA
125170521 ATAAA-AAATCCAAG
1 ATAAAGAAATCCAAG
* **
125170535 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
125170549 A-ATAAGAAATCC-AG
1 ATA-AAGAAATCCAAG
* *
125170563 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
125170579 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
125170594 ATA
1 ATA
125170597 CGATACTATG
Statistics
Matches: 46, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
13 1 0.02
14 14 0.30
15 29 0.63
16 2 0.04
ACGTcount: A:0.55, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:125173610 original size:93 final size:93
Alignment explanation
Indices: 125173498--125173669 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
125173488 GCCCATAAGT
* *
125173498 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
125173563 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
125173591 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
125173656 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
125173670 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:125173665 original size:46 final size:46
Alignment explanation
Indices: 125173490--125173665 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
125173480 TGTAACCCGC
* * *
125173490 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
125173536 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
125173586 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
125173629 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
125173666 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:125176380 original size:93 final size:93
Alignment explanation
Indices: 125176268--125176439 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
125176258 CGCCCATAAG
* *
125176268 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
125176333 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
125176361 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
125176426 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
125176440 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:125176436 original size:46 final size:46
Alignment explanation
Indices: 125176261--125176436 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
125176251 TGTAACCCGC
* * *
125176261 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
125176307 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
125176357 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
125176400 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
125176437 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:125179973 original size:47 final size:49
Alignment explanation
Indices: 125179897--125180029 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 49
125179887 TGTAACCCGC
*
125179897 CCATAGGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
125179947 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
125179990 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
125180030 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 30 0.42
48 1 0.01
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:125180045 original size:46 final size:44
Alignment explanation
Indices: 125179905--125180045 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 44
125179895 GCCCATAGGC
*
125179905 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
125179952 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
125179998 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
125180044 GA
1 GA
125180046 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:125184627 original size:2 final size:2
Alignment explanation
Indices: 125184620--125184647 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
125184610 ATATTTAACT
125184620 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125184648 CATTTTGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125188104 original size:30 final size:30
Alignment explanation
Indices: 125188059--125188118 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
125188049 ATTTAATACG
*
125188059 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
125188089 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
125188119 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:125195187 original size:47 final size:48
Alignment explanation
Indices: 125195064--125195193 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
125195054 TATAACCTGC
*
125195064 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-GGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGGCGTTCACAT
*
125195110 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGGCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-GGC--GTTCACAT
* *
125195160 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
125195194 ACTCAACCAT
Statistics
Matches: 76, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
46 34 0.45
47 29 0.38
48 2 0.03
49 4 0.05
50 4 0.05
51 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGGCGTTCACAT
Found at i:125195696 original size:42 final size:43
Alignment explanation
Indices: 125195579--125195953 Score: 613
Period size: 43 Copynumber: 8.9 Consensus size: 43
125195569 AAAAATTTGT
*
125195579 GGCGTTTGTTGGAAAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTG-TGG-GAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
125195624 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCAGCCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
125195667 GGCGTTTGTGGG-AAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
125195709 GGCGTTTGTGGG-AAAGCGCCGCTAAAGGTC-A-GCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
125195749 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
125195792 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
125195835 GGCGTTTGTGGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
125195878 GGCGTTTGTGTG-AAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
125195920 GGCGTTT-T-TG-AAAGCGCCGCTAAAAGTCAAGGCT
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCT
125195954 AAATTTGGCA
Statistics
Matches: 318, Mismatches: 9, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
40 46 0.14
41 20 0.06
42 95 0.30
43 146 0.46
44 3 0.01
45 8 0.03
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:125196042 original size:31 final size:31
Alignment explanation
Indices: 125196007--125196087 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
125195997 TTTCCTGCAT
* *
125196007 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
125196038 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
125196069 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
125196088 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:125196357 original size:21 final size:21
Alignment explanation
Indices: 125196333--125196378 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
125196323 GCTCGTGCCT
*
125196333 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
125196354 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
125196375 CTGC
1 CTGC
125196379 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:125202035 original size:9 final size:9
Alignment explanation
Indices: 125202021--125202253 Score: 143
Period size: 9 Copynumber: 25.6 Consensus size: 9
125202011 TATTTAAGTA
125202021 TTATGTAAG
1 TTATGTAAG
*
125202030 TTATGTAAT
1 TTATGTAAG
*
125202039 TTATGATATG
1 TTATG-TAAG
* * *
125202049 ATATAT-AT
1 TTATGTAAG
*
125202057 TTATGTAAA
1 TTATGTAAG
* *
125202066 TTATAT-AT
1 TTATGTAAG
*
125202074 TTATCTAAG
1 TTATGTAAG
125202083 TTATGTAAG
1 TTATGTAAG
*
125202092 TTATGTAAA
1 TTATGTAAG
*
125202101 TTATGATATAAAA
1 TTATG---T-AAG
*
125202114 TATATTTAAG
1 T-TATGTAAG
125202124 TATTATGTAAG
1 --TTATGTAAG
125202135 TTATGTAAG
1 TTATGTAAG
* *
125202144 TTATAT-AT
1 TTATGTAAG
*
125202152 TTATCTAAG
1 TTATGTAAG
*
125202161 TTATATAAG
1 TTATGTAAG
*
125202170 TTATATAAG
1 TTATGTAAG
*
125202179 TTATGTATG
1 TTATGTAAG
*
125202188 TTATATAAG
1 TTATGTAAG
*
125202197 TTATGTATG
1 TTATGTAAG
*
125202206 TTATATAAG
1 TTATGTAAG
125202215 TTATGTAAG
1 TTATGTAAG
*
125202224 TTA--TATG
1 TTATGTAAG
*
125202231 TTATATAAG
1 TTATGTAAG
*
125202240 TTATGTAAA
1 TTATGTAAG
125202249 TTATG
1 TTATG
125202254 ATATCAAATA
Statistics
Matches: 174, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
7 6 0.03
8 16 0.09
9 128 0.74
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:125202072 original size:17 final size:17
Alignment explanation
Indices: 125202050--125202109 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
125202040 TATGATATGA
125202050 TATATATTTATGTAAAT
1 TATATATTTATGTAAAT
* *
125202067 TATATATTTATCTAAGT
1 TATATATTTATGTAAAT
* *
125202084 TATGTAAGTTATGTAAAT
1 TATAT-ATTTATGTAAAT
125202102 TATGATAT
1 TAT-ATAT
125202110 AAAATATATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
17 19 0.58
18 13 0.39
19 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (17 bp):
TATATATTTATGTAAAT
Found at i:125202191 original size:105 final size:105
Alignment explanation
Indices: 125201997--125202203 Score: 274
Period size: 105 Copynumber: 2.0 Consensus size: 105
125201987 ACTAGTTATG
* * * * *
125201997 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* *
125202062 TAAATTATATATTTATCTAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATAGTTATCTAAGTTATATAAGTTATGTAAAT
* *
125202102 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATAT-AGTTAT
* * *
125202165 ATAAGTTATATAAGTTATGTATGTTATATAAGTTATGTA
65 ATAAATTATAT-AGTTATCTAAGTTATATAAGTTATGTA
125202204 TGTTATATAA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
103 4 0.05
104 18 0.20
105 66 0.75
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (105 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATAGTTATCTAAGTTATATAAGTTATGTAAAT
Found at i:125202606 original size:24 final size:24
Alignment explanation
Indices: 125202574--125202641 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
125202564 ACTTAAACGG
125202574 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
125202598 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
125202622 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
125202642 CAATAATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:125203766 original size:563 final size:551
Alignment explanation
Indices: 125202933--125205196 Score: 3783
Period size: 563 Copynumber: 4.0 Consensus size: 551
125202923 AAGAAATTTA
* *
125202933 AAAATA-TTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
*
125202996 ATCAAAAATGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATA
66 AT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G-----------
*
125203061 TTCAATAGTAAATGAGCTCGATAGAA-TTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
118 ---AATAGTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
*
125203125 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTC
180 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTC
125203190 AGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTT-AATATTAAAATCAAACATTATTAAT
245 AGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATTAAT
*
125203254 ATAAAAAAATAGTAACTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
310 ATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
125203319 AATTGGAAATAAATTAA-G-AATAGTAAATGAGCTC-ATAGAACTTTTTTCAAGTCTTTTTGAAT
375 AATTGGAAATAAATTAAGGTAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAAT
125203381 TTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCG
440 TTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCG
125203446 ATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
505 ATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
*
125203493 AAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
125203558 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATA
66 AT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G-----------
*
125203623 TTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
118 ---AATAGTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
*
125203688 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTC
180 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTC
125203753 AGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATTAAT
245 AGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATTAAT
125203818 ATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
310 ATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
*
125203883 AATTGGAAATAAATTAA-G-AATAGTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAAT
375 AATTGGAAATAAATTAAGGTAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAAT
125203946 TTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCG
440 TTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCG
125204011 ATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
505 ATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
* *
125204058 AAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAACTTAAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
125204123 ATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAG
66 ATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAG
125204188 CTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
131 CTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
125204253 CCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
196 CCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
*
125204318 TACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAAT
261 TACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAAT
125204383 TTAAATATAATAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
326 TTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
125204447 AGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTT
391 AGG------------T-AATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTT
*
125204512 TTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATA
443 TTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATA
125204577 TAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
508 TAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
125204621 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
125204686 ATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAG
66 ATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAG
125204751 CTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
131 CTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
125204816 CCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
196 CCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
*
125204881 TACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAAT
261 TACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAAT
125204946 TTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
326 TTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
125205011 AGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTT
391 AGG------------T-AATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTT
* *
125205076 TTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATA
443 TTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATA
125205141 TAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
508 TAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
125205185 AAAATATTTAAA
1 AAAATATTTAAA
125205197 ATAAGGTTAG
Statistics
Matches: 1668, Mismatches: 15, Indels: 38
0.97 0.01 0.02
Matches are distributed among these distances:
548 49 0.03
549 222 0.13
560 5 0.00
561 29 0.02
562 115 0.07
563 637 0.38
564 405 0.24
565 206 0.12
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (551 bp):
AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
ATAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAG
CTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACA
CCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATA
TACTTTGAATCTTTAAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAAT
TTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
AGGTAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCA
TACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGT
CAGGTTTCCAGCCTATATACTTTGAATCTTT
Found at i:125203873 original size:290 final size:274
Alignment explanation
Indices: 125202939--125205196 Score: 3741
Period size: 274 Copynumber: 8.0 Consensus size: 274
125202929 TTTAAAAATA
* *
125202939 TTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAATATCAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATAT-AAAA
*
125203003 ATGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATA
65 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G--------------AATA
*
125203068 GTAAATGAGCTCGATAGAA-TTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
115 GTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
*
125203132 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
180 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTC
*
125203197 CAGCCTATATACTTTGAATCTTTAAAATAT
245 CAGCCTATATACTTTGAATCTTTAAATTAT
*
125203227 TT-AATATTAAAATCAAACATTATTAATATAAAAAAATAGTAACTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATAT-AAAA
125203291 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTC-AT
65 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAAT
125203355 AGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
130 AGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
125203420 GAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
195 GAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
125203485 GAATCTTTAAATTAT
260 GAATCTTTAAATTAT
125203500 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATAT-AAAA
125203565 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATA
65 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G--------------AATA
*
125203630 GTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
115 GTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
*
125203695 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
180 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTC
*
125203760 CAGCCTATATACTTTGAATCTTTAAAATAT
245 CAGCCTATATACTTTGAATCTTTAAATTAT
125203790 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATAT-AAAA
125203855 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAAT
65 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAAT
125203920 AGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
130 AGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
125203985 GAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
195 GAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
125204050 GAATCTTTAAATTAT
260 GAATCTTTAAATTAT
*
125204065 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAACTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
125204130 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAATA
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAATA
125204195 GAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
131 GAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
125204260 AGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
196 AGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
125204325 AATCTTTAAATTAT
261 AATCTTTAAATTAT
125204339 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
125204404 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAG
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G--------------AATAG
*
125204469 TAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCG
116 TAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCG
*
125204534 TTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCC
181 TTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCC
*
125204599 AGCCTATATACTTTGAATCTTTAAAATAT
246 AGCCTATATACTTTGAATCTTTAAATTAT
125204628 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
125204693 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAATA
66 AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAATA
125204758 GAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
131 GAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
125204823 AGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
196 AGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
125204888 AATCTTTAAATTAT
261 AATCTTTAAATTAT
125204902 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
1 TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATAT-AAAA
125204967 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATA
65 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G--------------AATA
* *
125205032 GTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGAC
115 GTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
*
125205097 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
180 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTC
*
125205162 CAGCCTATATACTTTGAATCTTTAAAATAT
245 CAGCCTATATACTTTGAATCTTTAAATTAT
125205192 TTAAA
1 TTAAA
125205197 ATAAGGTTAG
Statistics
Matches: 1895, Mismatches: 25, Indels: 98
0.94 0.01 0.05
Matches are distributed among these distances:
272 6 0.00
273 156 0.08
274 649 0.34
275 271 0.14
276 1 0.00
287 27 0.01
288 78 0.04
289 287 0.15
290 420 0.22
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (274 bp):
TTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAA
AGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGAGCTCAATA
GAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGG
AGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTG
AATCTTTAAATTAT
Found at i:125204969 original size:838 final size:839
Alignment explanation
Indices: 125202933--125205196 Score: 4092
Period size: 838 Copynumber: 2.7 Consensus size: 839
125202923 AAGAAATTTA
* *
125202933 AAAATA-TTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
* *
125202996 ATCAAAAATGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATA
66 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAA-G-----------
*
125203061 TTCAATAGTAAATGAGCTCGATAGAA-TTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
119 ---AATAGTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
*
125203125 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTC
181 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTC
*
125203190 AGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTT-AATATTAAAATCAAACATTATTAAT
246 AGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAAT
125203254 ATAAAAAAATAGTAACTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
311 ATAAAAAAATAGTAACTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
125203319 AATTGGAAATAAATTAAGAATAGTAAATGAGCTCATAGAACTTTTTTCAAGTCTTTTTGAATTTT
376 AATTGGAAATAAATTAAGAATAGTAAATGAGCTCATAGAACTTTTTTCAAGTCTTTTTGAATTTT
125203384 TTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATA
441 TTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATA
125203449 TAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAAT
506 TAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAAT
125203514 CAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTT
571 CAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTT
125203579 AATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGA
636 AATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGA
125203644 TAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAG
701 TAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAG
125203709 GGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTT
766 GGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTT
125203774 TGAATCTTT
831 TGAATCTTT
125203783 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
125203848 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGA
66 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGA
125203913 GCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
131 GCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
125203978 ACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
196 ACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
125204043 ATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAA
261 ATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAA
125204108 CTTAAATATAATAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATT
326 CTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATT
125204172 AAGAATAGTAAATGAGCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
391 AAGAATAGTAAATGAGCTC-ATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCAT
125204237 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTC
455 ACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTC
125204302 AGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAAT
520 AGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAAT
125204367 ATAAAAAAATAGTAATTTAAATATAATAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTA
585 ATAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTA
125204431 AATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCA
650 AATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCA
125204496 AGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
715 AGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
125204561 ATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
780 ATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
125204621 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
1 AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
125204686 AT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGA
66 ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGA
125204750 GCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
131 GCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
125204815 ACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
196 ACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
125204880 ATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAA
261 ATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAA
*
125204945 TTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATT
326 CTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATT
125205010 AAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTT
391 AA-G--------------AATAGTAAATGAGCTC-ATAGAACTTTTTTCAAGTCTTTTTGAATTT
* *
125205075 TTTAAGATTCATCATACGTGACGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGAT
440 TTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGAT
*
125205140 ATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
505 ATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAA
125205197 ATAAGGTTAG
Statistics
Matches: 1381, Mismatches: 12, Indels: 39
0.96 0.01 0.03
Matches are distributed among these distances:
837 295 0.21
838 544 0.39
839 265 0.19
850 6 0.00
851 30 0.02
852 76 0.06
853 165 0.12
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.36
Consensus pattern (839 bp):
AAAATATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTAAATATAATAAT
ATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGAATAGTAAATGA
GCTCAATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC
ACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTAT
ATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAA
CTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATT
AAGAATAGTAAATGAGCTCATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATA
CGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAACTCGATATAAGGCAACCCGTCA
GGTTTCCAGCCTATATACTTTGAATCTTTAAATTATTTAAATATTAAAATCAAACATTATTAATA
TAAAAAAATAGTAATTTAAATATAATAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAA
ATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAA
GTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATA
TCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT
Found at i:125208845 original size:28 final size:27
Alignment explanation
Indices: 125208793--125208845 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
125208783 GGTCTCTCTA
*
125208793 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
125208820 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
125208846 AGTCTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:125209032 original size:12 final size:12
Alignment explanation
Indices: 125209015--125209047 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
125209005 CATTAATATC
125209015 TATATATATCAA
1 TATATATATCAA
*
125209027 TATATATATCCA
1 TATATATATCAA
125209039 TATATATAT
1 TATATATAT
125209048 ATATTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (12 bp):
TATATATATCAA
Found at i:125209650 original size:41 final size:40
Alignment explanation
Indices: 125209539--125209651 Score: 133
Period size: 40 Copynumber: 2.8 Consensus size: 40
125209529 ATTTAATCTT
*
125209539 TTAGTGGCGTTTTTTAAAAAA-CGCCGCTAAAGATCGAGCA
1 TTAGCGGCG-TTTTTAAAAAAGCGCCGCTAAAGATCGAGCA
* * *
125209579 TTAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGGT-GTA-CT
1 TTAGCGGCGTTTTTAAAAAAGCGCCGCTAAAGATCG-AGCA
125209618 TATAGCGGCGTTTCTTAAAAAAGCGCCGCTAAAG
1 T-TAGCGGCGTTT-TTAAAAAAGCGCCGCTAAAG
125209652 CCACTAAAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
39 13 0.20
40 32 0.50
41 19 0.30
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (40 bp):
TTAGCGGCGTTTTTAAAAAAGCGCCGCTAAAGATCGAGCA
Found at i:125211690 original size:29 final size:29
Alignment explanation
Indices: 125211549--125211678 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
125211539 GACAAGATTG
* * * *
125211549 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
125211579 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
125211607 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
125211636 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
125211665 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
125211679 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.56
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:125219593 original size:30 final size:30
Alignment explanation
Indices: 125219557--125219657 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
125219547 GACAAGATTG
* *
125219557 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
125219587 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
125219615 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
125219644 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
125219658 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 24 0.39
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:125219669 original size:29 final size:28
Alignment explanation
Indices: 125219583--125219661 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
125219573 TTTAAAATTG
* *
125219583 TATAGCACTAAGTGTGCGAGTTTGAT-TC
1 TATAGCACTAAGTGTGCG-GATTGATATA
* *
125219611 TATAGCACTAAGTGTGC-GAGCTGAAAATA
1 TATAGCACTAAGTGTGCGGA-TTG-ATATA
125219640 TATAGCACTAAGTGTGCGGATT
1 TATAGCACTAAGTGTGCGGATT
125219662 CACTATATGC
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.02
27 2 0.05
28 18 0.43
29 19 0.45
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGGATTGATATA
Found at i:125225551 original size:29 final size:29
Alignment explanation
Indices: 125225518--125225591 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
125225508 CCTTCGAGCT
125225518 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
125225547 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
125225576 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
125225592 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:125225552 original size:58 final size:58
Alignment explanation
Indices: 125225459--125225591 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
125225449 ATACTCGATT
* * * * *
125225459 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
125225517 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
125225575 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
125225592 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:125233431 original size:29 final size:29
Alignment explanation
Indices: 125233398--125233471 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
125233388 CCTTCGAGCT
125233398 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
125233427 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
125233456 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
125233472 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:125233432 original size:58 final size:58
Alignment explanation
Indices: 125233339--125233471 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
125233329 ATACTCGATT
* * * * *
125233339 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
125233397 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
125233455 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
125233472 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:125240950 original size:40 final size:39
Alignment explanation
Indices: 125240906--125240990 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
125240896 AAGTGACTAT
*
125240906 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGACTAAG-CCCGAAGGCATTCGTGCGAGTTAATAA
* * *
125240946 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGCCCGAAGGCATTCGTGCGAGTTAATAA
*
125240985 ACCCGG
1 ATCCGG
125240991 GCATTCGTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 29 0.73
40 11 0.28
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGACTAAGCCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:125240969 original size:39 final size:40
Alignment explanation
Indices: 125240867--125240992 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 40
125240857 TTGAATGATG
* * * *
125240867 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
125240907 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
125240947 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
*
125240986 CCCGGGC
1 TCCGGGC
125240993 ATTCGTGCGA
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 31 0.43
40 35 0.49
41 6 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:125243206 original size:15 final size:15
Alignment explanation
Indices: 125243170--125243248 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
125243160 GTATCTTGGG
*
125243170 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
125243185 -CTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
125243199 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
125243214 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
125243229 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
125243243 TTTCTT
1 TTTCTT
125243249 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 22 0.42
15 29 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:125243212 original size:29 final size:30
Alignment explanation
Indices: 125243161--125243239 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
125243151 CATAGTATCG
* * *
125243161 TATCTTGGGTTTCTTTATCCT-GGACTCTT
1 TATCTTGGATTTCTTTATTCTGGGACTCTC
**
125243190 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGACTCTC
125243220 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
125243240 GGTTTTCTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
28 1 0.02
29 17 0.40
30 23 0.55
31 1 0.02
ACGTcount: A:0.11, C:0.18, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGACTCTC
Found at i:125243231 original size:30 final size:30
Alignment explanation
Indices: 125243161--125243247 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 30
125243151 CATAGTATCG
* * ** *
125243161 TATCTTGGGTTTCTTTATCCT-GGACTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
125243190 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
*
125243220 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
125243248 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.49
30 23 0.47
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:125245672 original size:46 final size:46
Alignment explanation
Indices: 125245619--125245794 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
125245609 TATTTGGGCA
125245619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
125245665 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
125245712 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
125245758 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
125245795 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 73 0.66
47 37 0.34
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:125245732 original size:93 final size:93
Alignment explanation
Indices: 125245615--125245786 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
125245605 GGGATATTTG
* *
125245615 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
125245680 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
125245708 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
125245773 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
125245787 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:125249055 original size:45 final size:45
Alignment explanation
Indices: 125248917--125249083 Score: 171
Period size: 45 Copynumber: 3.7 Consensus size: 45
125248907 GGCATCCGAA
* *
125248917 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAA-
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG-CCCAAG
* * * * * * * *
125248963 CTCGTTGAGTTGAGTCTGAGTTCGA--GAGTGTA-ACTAGGCATCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTA-TGGATGCAACGC-CCAAG
125249008 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCAAG
125249053 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
125249084 GCGGTTACAT
Statistics
Matches: 96, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 61 0.64
46 30 0.31
47 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCAAG
Found at i:125262911 original size:46 final size:45
Alignment explanation
Indices: 125262859--125263062 Score: 188
Period size: 46 Copynumber: 4.5 Consensus size: 45
125262849 GTCGATGCCG
* * *
125262859 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
*
125262905 TGTCCCATACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
125262949 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
125262995 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
125263041 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
125263063 AGCCCTCGTC
Statistics
Matches: 137, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
43 5 0.04
44 32 0.23
45 4 0.03
46 96 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:125263062 original size:92 final size:91
Alignment explanation
Indices: 125262902--125263118 Score: 249
Period size: 92 Copynumber: 2.4 Consensus size: 91
125262892 CCGTGCTGAC
*
125262902 GCATGTCCCATACATGTCTTACACTAG-CACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
1 GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
* * *
125262966 ACACTGGCTATCATCTCGAGGCCGAT
66 ACACTAGCCATCATCTCAAGGCCGAT
* * * * *
125262992 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGATGCATGTCCCAGACATGTC
1 GCATGTCCCATACATGTCTTACACTGGC-CACAT-CTCGTAGCCGACGCATGTCCCAGACATGTC
* * * *
125263056 TTACACTAGCCCTCGTCTCAATGCCGAT
64 TGACACTAGCCATCATCTCAAGGCCGAT
*
125263084 GCCATGTCTCATACATGGTCTTACACTGGCACACA
1 G-CATGTCCCATACAT-GTCTTACACTGGC-CACA
125263119 AATCTCATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 25 0.24
92 50 0.48
93 14 0.13
94 16 0.15
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCATGTCCCATACATGTCTTACACTGGCCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTG
ACACTAGCCATCATCTCAAGGCCGAT
Found at i:125263085 original size:46 final size:44
Alignment explanation
Indices: 125262902--125263110 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
125262892 CCGTGCTGAC
* *
125262902 GCATGTCCCATACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
125262946 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
125262992 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
125263038 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
125263084 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
125263111 GGCACACAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 27 0.20
45 4 0.03
46 77 0.56
47 15 0.11
48 10 0.07
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:125267069 original size:40 final size:39
Alignment explanation
Indices: 125266881--125267061 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
125266871 TATTACAGGA
* * * *
125266881 ATTATATCCAGACTTAAGTCCCGTAGGCATTTGTGCTGGT
1 ATTATATCCGGGC-TAAGTCCCGAAGGCATTTATGCTGGT
* *
125266921 GTTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGT
* *
125266960 GTTATATCCGGGCTAAGTCCCAAAGGCATTTATGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGT
*
125266999 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTATGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTTATGCTGGT
125267038 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
125267062 CATGCTTTCT
Statistics
Matches: 130, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 99 0.76
40 31 0.24
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGT
Found at i:125273776 original size:39 final size:39
Alignment explanation
Indices: 125273722--125273813 Score: 157
Period size: 39 Copynumber: 2.4 Consensus size: 39
125273712 ATATTTGATG
* *
125273722 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGCCTATGTGCTGGAAT
*
125273761 TATATCCGAACTTAGGGTCCGCAGCCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGCCTATGTGCTGGAAT
125273800 TATATCCGGACTTA
1 TATATCCGGACTTA
125273814 AGTCCCGAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGCCTATGTGCTGGAAT
Found at i:125273966 original size:39 final size:39
Alignment explanation
Indices: 125273791--125273967 Score: 214
Period size: 39 Copynumber: 4.5 Consensus size: 39
125273781 GCAGCCTATG
* * *
125273791 TGCTGGAATTATATCCGGACTTAAGTCCCGAAGGCATTTG
1 TGCTGGTATTATATCCGGGC-TAAGTCCCGAAGGCATTTA
* * * *
125273831 TTCTGGTATTATTTTCGGGCTAAGTCCCGAAGGCATTTT
1 TGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTA
* **
125273870 TGTTGGTGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 TGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTA
*
125273909 TGCTGGTATTATAT-CGGGCTAAAGTCCCGCAGGC-TTTA
1 TGCTGGTATTATATCCGGGCT-AAGTCCCGAAGGCATTTA
*
125273947 TGCTGGCATTATATCCGGGCT
1 TGCTGGTATTATATCCGGGCT
125273968 TAAAGTCCTG
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
38 23 0.20
39 79 0.68
40 15 0.13
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (39 bp):
TGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTA
Found at i:125274133 original size:18 final size:18
Alignment explanation
Indices: 125274110--125274145 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
125274100 AAGTTGGTCA
125274110 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
125274128 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
125274146 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:125275715 original size:28 final size:27
Alignment explanation
Indices: 125275652--125275720 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 27
125275642 ATAGTGAGTC
125275652 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
125275679 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
125275707 CGCACACTTAGTGC
1 CGCACACTTAGTGC
125275721 CGAAATCAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:125278332 original size:34 final size:34
Alignment explanation
Indices: 125278248--125278332 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 34
125278238 CAACACAAAA
* **
125278248 CAGTCTGGGCCTTAGCCCATATCAGTGGCAATAT
1 CAGTGTGGGCCTTAGCCCATATCAGTACCAATAT
*
125278282 CAGTGTGGG-CTCTAGCCCATTAT-AGTACCAGTAT
1 CAGTGTGGGCCT-TAGCCCA-TATCAGTACCAATAT
125278316 CAGTGTGGGCCTTAGCC
1 CAGTGTGGGCCTTAGCC
125278333 TAATTCAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
33 2 0.05
34 37 0.84
35 5 0.11
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.27
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATATCAGTACCAATAT
Found at i:125278343 original size:34 final size:33
Alignment explanation
Indices: 125278248--125278343 Score: 95
Period size: 34 Copynumber: 2.8 Consensus size: 33
125278238 CAACACAAAA
* **
125278248 CAGTCTGGGCCTTAGCCCATATCAGTGGCAATAT
1 CAGTGTGGGCCTTAGCCCAT-TCAGTACCAATAT
* *
125278282 CAGTGTGGG-CTCTAGCCCATTATAGTACCAGTAT
1 CAGTGTGGGCCT-TAGCCCATT-CAGTACCAATAT
*
125278316 CAGTGTGGGCCTTAGCCTAATTCAGTAC
1 CAGTGTGGGCCTTAGCC-CATTCAGTAC
125278344 AGTGTTAGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
33 3 0.06
34 43 0.84
35 5 0.10
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (33 bp):
CAGTGTGGGCCTTAGCCCATTCAGTACCAATAT
Found at i:125283329 original size:40 final size:39
Alignment explanation
Indices: 125283218--125283321 Score: 190
Period size: 39 Copynumber: 2.6 Consensus size: 39
125283208 AATGTTCGAC
125283218 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
125283257 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
*
125283296 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
125283322 CTTTGTGCGG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
39 54 0.86
40 9 0.14
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
Found at i:125290967 original size:49 final size:49
Alignment explanation
Indices: 125290895--125290994 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
125290885 TGGTAAGTAC
125290895 TTTAAATCCTAGACACAATTATGTGGGATTATGGAGTTTGATGTATTGG
1 TTTAAATCCTAGACACAATTATGTGGGATTATGGAGTTTGATGTATTGG
125290944 TTTAAATCCTAGACACAATTATGTGGGATTATGGAGTTTGATGTATTGG
1 TTTAAATCCTAGACACAATTATGTGGGATTATGGAGTTTGATGTATTGG
125290993 TT
1 TT
125290995 GACTATTTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (49 bp):
TTTAAATCCTAGACACAATTATGTGGGATTATGGAGTTTGATGTATTGG
Found at i:125293951 original size:40 final size:40
Alignment explanation
Indices: 125293868--125294020 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
125293858 TCGAATGATG
* *
125293868 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
125293908 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
125293948 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
125293989 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
125294021 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:125302674 original size:28 final size:28
Alignment explanation
Indices: 125302613--125302710 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
125302603 TCACAAATTG
** * *
125302613 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
125302642 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
125302670 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
125302698 GCACTAAGTGTGC
1 GCACTAAGTGTGC
125302711 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:125310334 original size:28 final size:28
Alignment explanation
Indices: 125310273--125310370 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
125310263 TCACAAATTG
** * *
125310273 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
125310302 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
** *
125310330 GCACTAAGTGTGTGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
125310358 GCACTAAGTGTGC
1 GCACTAAGTGTGC
125310371 GAGCTTATTG
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.02
28 41 0.71
29 16 0.28
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:125313895 original size:26 final size:26
Alignment explanation
Indices: 125313866--125313916 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
125313856 AAATTACAAG
*
125313866 TTATTAGCAATTAATATTAATTAATA
1 TTATTAGCAATTAATATTAAGTAATA
* **
125313892 TTATTTGTTATTAATATTAAGTAAT
1 TTATTAGCAATTAATATTAAGTAAT
125313917 TAATAATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (26 bp):
TTATTAGCAATTAATATTAAGTAATA
Found at i:125313994 original size:20 final size:18
Alignment explanation
Indices: 125313965--125314064 Score: 66
Period size: 20 Copynumber: 5.4 Consensus size: 18
125313955 TATATTTCTA
125313965 TATTATTTATTTTATTATTC
1 TATTA-TTATTTTATTA-TC
*
125313985 TATCTATTATTATATTATC
1 TAT-TATTATTTTATTATC
125314004 TATTATTA---TATTATC
1 TATTATTATTTTATTATC
*
125314019 TAATTATATACTATTT-TTATA
1 T-ATTAT-TA-T-TTTATTATC
*
125314040 TATTATTATTATATATAT-
1 TATTATTATTTTAT-TATC
125314058 TATTATT
1 TATTATT
125314065 TCTATTTAGT
Statistics
Matches: 67, Mismatches: 3, Indels: 22
0.73 0.03 0.24
Matches are distributed among these distances:
15 8 0.12
16 5 0.07
17 4 0.06
18 14 0.21
19 10 0.15
20 18 0.27
21 7 0.10
22 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTATTATTTTATTATC
Found at i:125314025 original size:28 final size:28
Alignment explanation
Indices: 125313989--125314064 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 28
125313979 TTATTCTATC
125313989 TATTAT-TATATTATCTATTAT-TATAT
1 TATTATATATATTATCTATTATATATAT
* *
125314015 TATCTAATTATATACTAT-TTTTATATATTAT
1 TAT-T-A-TATATATTATCTATTATATA-TAT
125314046 TATTATATATATTAT-TATT
1 TATTATATATATTATCTATT
125314065 TCTATTTAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
26 3 0.08
27 1 0.03
28 13 0.32
29 7 0.17
30 10 0.25
31 6 0.15
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTATATATATTATCTATTATATATAT
Found at i:125314038 original size:13 final size:12
Alignment explanation
Indices: 125313963--125314063 Score: 80
Period size: 12 Copynumber: 7.9 Consensus size: 12
125313953 TCTATATTTC
125313963 TATATTATT-TA
1 TATATTATTATA
* *
125313974 TTTTATTATTCTA
1 -TATATTATTATA
*
125313987 TCTATTATTATA
1 TATATTATTATA
125313999 T-TATCTATTATTA
1 TATAT-TATTA-TA
125314012 TATTATCTAATTATA
1 TA-TAT-T-ATTATA
*
125314027 TACTATTTTTATA
1 TA-TATTATTATA
125314040 TATTATTATTATA
1 TA-TATTATTATA
125314053 TATATTATTAT
1 TATATTATTAT
125314064 TTCTATTTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
11 3 0.04
12 33 0.43
13 23 0.30
14 1 0.01
15 12 0.16
16 4 0.05
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATTATTATA
Found at i:125314081 original size:3 final size:3
Alignment explanation
Indices: 125313965--125314064 Score: 66
Period size: 3 Copynumber: 32.3 Consensus size: 3
125313955 TATATTTCTA
*
125313965 TAT TATT TAT T-T TAT TAT T-C TAT CTAT TAT TA- TAT TAT CTAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT
* *
125314010 TA- TAT TAT CTAAT TAT ATAC TAT TTT TAT ATAT TAT TAT TA- TAT ATAT
1 TAT TAT TAT -T-AT TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT
125314058 TAT TAT T
1 TAT TAT T
125314065 TCTATTTAGT
Statistics
Matches: 78, Mismatches: 6, Indels: 26
0.71 0.05 0.24
Matches are distributed among these distances:
2 9 0.12
3 48 0.62
4 19 0.24
5 2 0.03
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:125314087 original size:17 final size:17
Alignment explanation
Indices: 125314057--125314096 Score: 71
Period size: 17 Copynumber: 2.3 Consensus size: 17
125314047 ATTATATATA
125314057 TTATTATTTCTATTTAG
1 TTATTATTTCTATTTAG
125314074 TTATTATTTCTATTTAG
1 TTATTATTTCTATTTAG
125314091 TATATT
1 T-TATT
125314097 TAGAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (17 bp):
TTATTATTTCTATTTAG
Found at i:125314115 original size:17 final size:16
Alignment explanation
Indices: 125313965--125314114 Score: 98
Period size: 15 Copynumber: 9.5 Consensus size: 16
125313955 TATATTTCTA
*
125313965 TATTATTTAT-TTTAT
1 TATTATTTCTATTTAT
* *
125313980 TATTCTATCTA-TTAT
1 TATTATTTCTATTTAT
125313995 TA-TATTATCTA-TTAT
1 TATTATT-TCTATTTAT
*
125314010 TA-TATTATCTAATTAT
1 TATTATT-TCTATTTAT
* * *
125314026 ATACTATTTTTATATAT
1 -TATTATTTCTATTTAT
* *
125314043 TATTA-TTATATATAT
1 TATTATTTCTATTTAT
125314058 TATTATTTCTATTTAGT
1 TATTATTTCTATTTA-T
*
125314075 TATTATTTCTATTTAG
1 TATTATTTCTATTTAT
**
125314091 TA-TATTTAGAATTTAT
1 TATTATTT-CTATTTAT
125314107 TATTATTT
1 TATTATTT
125314115 AATTTAAGTT
Statistics
Matches: 110, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
14 2 0.02
15 51 0.46
16 24 0.22
17 29 0.26
18 4 0.04
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (16 bp):
TATTATTTCTATTTAT
Found at i:125314132 original size:31 final size:32
Alignment explanation
Indices: 125314074--125314181 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 32
125314064 TTCTATTTAG
* ** **
125314074 TTATTATTTCTATTT-AGTATATTTAGAATTTA
1 TTATTATTT-AATTTAAGTATAAATAGAATAAA
125314106 TTATTATTTAATTTAAGT-TAAATAGAA-AAA
1 TTATTATTTAATTTAAGTATAAATAGAATAAA
* * *
125314136 TTAATAATTTAATTTAAGTATAATTAAAATAAA
1 TT-ATTATTTAATTTAAGTATAAATAGAATAAA
125314169 TTATTAATTTAAT
1 TTATT-ATTTAAT
125314182 AATTTAGAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
30 3 0.05
31 26 0.42
32 21 0.34
33 12 0.19
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (32 bp):
TTATTATTTAATTTAAGTATAAATAGAATAAA
Found at i:125321476 original size:54 final size:54
Alignment explanation
Indices: 125321391--125321515 Score: 214
Period size: 54 Copynumber: 2.3 Consensus size: 54
125321381 GACATGTTAG
** *
125321391 AAATGAAAGCCTTTGTGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGTATT
1 AAATGAAAATCTTTGTGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGCATT
*
125321445 AAATGAAAATCTTTGTGGCGAACCATGAAAAGAAAGCCTTTGTGGCAAAGCATT
1 AAATGAAAATCTTTGTGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGCATT
125321499 AAATGAAAATCTTTGTG
1 AAATGAAAATCTTTGTG
125321516 AAAAATCTTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (54 bp):
AAATGAAAATCTTTGTGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGCATT
Found at i:125321506 original size:27 final size:27
Alignment explanation
Indices: 125321391--125321515 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
125321381 GACATGTTAG
* *
125321391 AAATGAAAGCCTTTGTGGCGAACCATA
1 AAATGAAAGCCTTTGTGGCAAACCATT
* **
125321418 AAAAGAAAGCCTTTGTGGCAAAGTATT
1 AAATGAAAGCCTTTGTGGCAAACCATT
** * *
125321445 AAATGAAAATCTTTGTGGCGAACCATG
1 AAATGAAAGCCTTTGTGGCAAACCATT
* *
125321472 AAAAGAAAGCCTTTGTGGCAAAGCATT
1 AAATGAAAGCCTTTGTGGCAAACCATT
**
125321499 AAATGAAAATCTTTGTG
1 AAATGAAAGCCTTTGTG
125321516 AAAAATCTTG
Statistics
Matches: 77, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (27 bp):
AAATGAAAGCCTTTGTGGCAAACCATT
Found at i:125321666 original size:27 final size:27
Alignment explanation
Indices: 125321636--125321703 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
125321626 GAGAACTCTA
*
125321636 ACTCATGGTGAACTCTAAACGAATGGT
1 ACTCATGGTGAACTCTAAAAGAATGGT
* *
125321663 ACTCATGGTGAACTTTAAAAGAATTGT
1 ACTCATGGTGAACTCTAAAAGAATGGT
125321690 A-TACATGGTGAACT
1 ACT-CATGGTGAACT
125321704 ACGAAGGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
ACTCATGGTGAACTCTAAAAGAATGGT
Found at i:125322774 original size:11 final size:11
Alignment explanation
Indices: 125322758--125322786 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
125322748 GTAATTTTGT
125322758 AATTAAAACAA
1 AATTAAAACAA
125322769 AATTAAAACAA
1 AATTAAAACAA
125322780 AATTAAA
1 AATTAAA
125322787 GGAAGAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (11 bp):
AATTAAAACAA
Done.