Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 411 of 770
Found at i:126299487 original size:47 final size:48
Alignment explanation
Indices: 126299395--126299523 Score: 133
Period size: 47 Copynumber: 2.8 Consensus size: 48
126299385 CCTCGAGACA
* * * *
126299395 TAAGCCAATGTAAGA-CATGTCTGGGACAT-GCATTGGCTACAAGATG
1 TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATCGACTACAAGATG
** **
126299441 -ATAGTTAGTGTAAGG-CCATGTCTGGGACATGGCATCGACT-TGAGATG
1 TA-AGCCAGTGT-AGGACCATGTCTGGGACATGGCATCGACTACAAGATG
126299488 TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATC
1 TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATC
126299524 AGCACCTTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 9 0.13
47 49 0.73
48 8 0.12
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TAAGCCAGTGTAGGACCATGTCTGGGACATGGCATCGACTACAAGATG
Found at i:126299508 original size:140 final size:141
Alignment explanation
Indices: 126299263--126299523 Score: 330
Period size: 140 Copynumber: 1.9 Consensus size: 141
126299253 CGTAAGCTAG
* **
126299263 TGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGTCAGTGTAAGACCACGTCCAGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCACGTCCAGGA
* * * *
126299328 CATGGCATCGGCATTGAGATGAGTGCTAGTGGAAGACATGTTTGGGACAT-GCATCGGCCTCGAG
66 CATGGCATCGACATTGAGATGAGAGCCAGTGGAAGACATGTCTGGGACATGGCATCGGCCTCGAG
126299392 ACATAAGCCAA
131 ACATAAGCCAA
* * * * * * **
126299403 TGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGATAGTTAGTGTAAGGCCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCACGTCCAGGA
* *
126299468 CATGGCATCGAC-TTGAGATGTA-AGCCAGTGTAGGACCATGTCTGGGACATGGCATC
66 CATGGCATCGACATTGAGATG-AGAGCCAGTGGAAGA-CATGTCTGGGACATGGCATC
126299524 AGCACCTTAC
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 17 0.17
140 79 0.78
141 5 0.05
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCACGTCCAGGA
CATGGCATCGACATTGAGATGAGAGCCAGTGGAAGACATGTCTGGGACATGGCATCGGCCTCGAG
ACATAAGCCAA
Found at i:126301218 original size:24 final size:24
Alignment explanation
Indices: 126301191--126301253 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
126301181 CTTATTATGT
126301191 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
126301215 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
126301239 TCGCACACATAGTGC
1 TCGCACACATAGTGC
126301254 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:126309080 original size:24 final size:24
Alignment explanation
Indices: 126309053--126309115 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
126309043 CTTATTATGT
126309053 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
126309077 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
126309101 TCGCACACATAGTGC
1 TCGCACACATAGTGC
126309116 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:126312310 original size:2 final size:2
Alignment explanation
Indices: 126312299--126312337 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
126312289 ATATAAATTC
* *
126312299 AT AT -T AT AT AT AT AT AT AT AT AC AT AT AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126312338 TCATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:126315518 original size:40 final size:39
Alignment explanation
Indices: 126315369--126315520 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
126315359 AATGTTCGAG
*
126315369 TGATATCCGGGCTAAGCCCGAAGGAAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
126315408 TGATATCCGGGCTAAGCCCGAAGGCAATTGTTCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
126315447 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
126315486 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
126315521 GGTTACCATA
Statistics
Matches: 103, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 86 0.83
40 17 0.17
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:126315536 original size:40 final size:40
Alignment explanation
Indices: 126315375--126315550 Score: 169
Period size: 39 Copynumber: 4.5 Consensus size: 40
126315365 CGAGTGATAT
* * ** *
126315375 CCGGGCTAAG-CCCGAAGGAAATTGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
126315414 CCGGGCTAAG-CCCGAAGGCAATTGTTCGAGCTATGATAC
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
126315453 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
126315492 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
126315532 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
126315551 TGTTTTGAAC
Statistics
Matches: 120, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 80 0.67
40 40 0.33
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:126325000 original size:23 final size:23
Alignment explanation
Indices: 126324974--126325020 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
126324964 AATTCTATTG
*
126324974 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
126324997 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
126325020 T
1 T
126325021 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:126332100 original size:40 final size:39
Alignment explanation
Indices: 126331935--126332118 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
126331925 AAATTGAATG
* * *
126331935 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
126331975 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
126332015 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
126332055 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
126332094 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
126332119 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:126332143 original size:80 final size:81
Alignment explanation
Indices: 126331975--126332163 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
126331965 GCTGGAAATT
* * * *
126331975 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
126332040 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
126332056 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
126332119 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
126332135 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
126332164 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:126350637 original size:40 final size:40
Alignment explanation
Indices: 126350592--126350759 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
126350582 CGGAATATAA
126350592 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
126350632 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
126350672 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
126350712 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
126350752 CCGGATAT
1 CCGGATAT
126350760 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:126353013 original size:30 final size:29
Alignment explanation
Indices: 126352919--126353020 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
126352909 TATAGTGAAT
* * *
126352919 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
126352948 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
126352976 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
126353006 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
126353021 CAATCTTGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:126355582 original size:27 final size:27
Alignment explanation
Indices: 126355552--126355636 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
126355542 ATTACTAAAG
* * *
126355552 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
126355579 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
126355606 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
126355633 TACC
1 TACC
126355637 TTTGATTGTG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:126355597 original size:54 final size:54
Alignment explanation
Indices: 126355539--126355643 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
126355529 CTCAACTTGT
* * **
126355539 AAAATTACTAAAGTACCCTCGATTTATAGAATTATTATTTTACCCTTGATTTAC
1 AAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTAC
**** *
126355593 AAAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCTTTGATT
1 AAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTTGATT
126355644 GTGAAATTAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (54 bp):
AAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTAC
Found at i:126355679 original size:27 final size:27
Alignment explanation
Indices: 126355647--126355716 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
126355637 TTTGATTGTG
*
126355647 AAATTACTAAAATACCCCTA-TAGGGTA
1 AAATTACCAAAATACCCCTAGT-GGGTA
**
126355674 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTGGGTA
126355701 AAATTACCAAAATACC
1 AAATTACCAAAATACC
126355717 ACTGGTTTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.26
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTGGGTA
Found at i:126355724 original size:27 final size:26
Alignment explanation
Indices: 126355671--126355882 Score: 122
Period size: 27 Copynumber: 7.8 Consensus size: 26
126355661 CCCCTATAGG
*
126355671 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATA-CCCTGGTTT
126355698 GTAAAATTACCAAAATACCACTGGTTT
1 GTAAAATTACCAAAATACC-CTGGTTT
* * * **
126355725 GTGAAATTATCGAAATACCCTCAATTT
1 GTAAAATTACCAAAATACCCT-GGTTT
*
126355752 GTAAAATTA-CATAAATACCCCTGATTT
1 GTAAAATTACCA-AAATA-CCCTGGTTT
** * *
126355779 ACAAAATTACAAAAATACCCTTGACTTT
1 GTAAAATTACCAAAATACCC-TG-GTTT
* * *
126355807 CTAAAAATTA-TAGAAATACCATTGGTTT
1 GT-AAAATTACCA-AAATACC-CTGGTTT
** **
126355835 ACAAAATTACTGAAATACCCTTGGTTT
1 GTAAAATTACCAAAATACCC-TGGTTT
* * *
126355862 GTAGATTTACCAAAACACCCT
1 GTAAAATTACCAAAATACCCT
126355883 TGTAGGATGA
Statistics
Matches: 144, Mismatches: 29, Indels: 25
0.73 0.15 0.13
Matches are distributed among these distances:
26 9 0.06
27 106 0.74
28 13 0.09
29 16 0.11
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
GTAAAATTACCAAAATACCCTGGTTT
Found at i:126355732 original size:54 final size:55
Alignment explanation
Indices: 126355673--126355854 Score: 154
Period size: 54 Copynumber: 3.3 Consensus size: 55
126355663 CCTATAGGGT
* * **
126355673 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA-AAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTCAATTTGTAAAATTA-CATAAATACCACTGATTTAC
* * * *
126355727 GAAATTATCGAAATA-CCCTCAATTTGTAAAATTACATAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCCTCAATTTGTAAAATTACATAAATACCACTGATTTAC
* * * * * * * * *
126355781 AAAATTACAAAAATACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCCCTCAATTTGT-AAAATTACATAAATACCACTGATTTAC
**
126355837 AAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
126355855 TTGGTTTGTA
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
53 6 0.06
54 49 0.49
55 8 0.08
56 38 0.38
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (55 bp):
AAAATTACCAAAATACCCCTCAATTTGTAAAATTACATAAATACCACTGATTTAC
Found at i:126355979 original size:27 final size:27
Alignment explanation
Indices: 126355914--126355979 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
126355904 TACCCCTAAT
*
126355914 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
126355941 AGGTAAAGTGACCGTAATA-CCCTTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
126355968 TGGTAAAATGAC
1 AGGTAAAATGAC
126355980 AAATATGCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:126356827 original size:25 final size:25
Alignment explanation
Indices: 126356789--126356858 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
126356779 AGGAAGTGCT
* *
126356789 AAAAGGGCTCTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* *
126356814 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
126356839 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
126356859 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:126356871 original size:24 final size:24
Alignment explanation
Indices: 126356788--126356871 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
126356778 GAGGAAGTGC
* *
126356788 TAAAAGGGCTCTGCCCTAGTTTACC
1 TAAAAGGGCTTTGCCCTAGTTTA-T
* *
126356813 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCTAGTTTAT
*
126356837 CAAAAAGGGCTTTGCCCTAG-TTAT
1 -TAAAAGGGCTTTGCCCTAGTTTAT
126356861 TAAAAGAGGCT
1 TAAAAG-GGCT
126356872 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 37 0.74
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCTAGTTTAT
Found at i:126356882 original size:50 final size:50
Alignment explanation
Indices: 126356789--126356883 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
126356779 AGGAAGTGCT
**
126356789 AAAAGGGCTCTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTCTGCCCTAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
126356839 AAAAGGGCTTTGCCCTAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTCTGCCCTAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
126356884 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTCTGCCCTAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:126357065 original size:42 final size:42
Alignment explanation
Indices: 126357006--126357139 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
126356996 TAGTCTCCCC
126357006 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
126357048 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
126357090 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
126357132 AAATGGGC
1 AAATGGGC
126357140 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:126357199 original size:31 final size:31
Alignment explanation
Indices: 126357163--126357301 Score: 233
Period size: 31 Copynumber: 4.5 Consensus size: 31
126357153 TGTTTAGAGT
*
126357163 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
126357194 AAAGGCTTCGACTCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
126357225 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
126357256 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
126357287 AAAGGCTTCAGCCCA
1 AAAGGCTTCGGCCCA
126357302 AGACTAAATA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:126359276 original size:70 final size:70
Alignment explanation
Indices: 126359193--126359336 Score: 288
Period size: 70 Copynumber: 2.1 Consensus size: 70
126359183 GTTATCGTGT
126359193 TATTTTGAAATCAATTACTATTTTTGAAAACACGTCCTAAAGTTATCCAATTCCAACAGTTAAAT
1 TATTTTGAAATCAATTACTATTTTTGAAAACACGTCCTAAAGTTATCCAATTCCAACAGTTAAAT
126359258 ATAAG
66 ATAAG
126359263 TATTTTGAAATCAATTACTATTTTTGAAAACACGTCCTAAAGTTATCCAATTCCAACAGTTAAAT
1 TATTTTGAAATCAATTACTATTTTTGAAAACACGTCCTAAAGTTATCCAATTCCAACAGTTAAAT
126359328 ATAAG
66 ATAAG
126359333 TATT
1 TATT
126359337 ACCTACCTTA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (70 bp):
TATTTTGAAATCAATTACTATTTTTGAAAACACGTCCTAAAGTTATCCAATTCCAACAGTTAAAT
ATAAG
Found at i:126359843 original size:26 final size:26
Alignment explanation
Indices: 126359813--126359920 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
126359803 AACATTGCTG
* * *
126359813 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAAAGCCA
126359839 CCAGAACAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATAA-TGTGGCAAAGCCA
* *
126359866 CCAGAACAAATATATGTGGCACAGCCA
1 CCAGAACAGATA-ATGTGGCAAAGCCA
* *
126359893 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAAAGCCA
126359920 C
1 C
126359921 TAGGACGCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 56 0.79
28 2 0.03
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAAAGCCA
Found at i:126359903 original size:54 final size:53
Alignment explanation
Indices: 126359813--126359920 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 53
126359803 AACATTGCTG
* * * *
126359813 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAAAGCCA
1 CCAGAACAAATAATGTGACACAGCCACCAGAACAGATAAATGTGGCAAAGCCA
* * *
126359866 CCAGAACAAATATATGTGGCACAGCCACCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAAATA-ATGTGACACAGCCACCAGAACAGATAAATGTGGCAAAGCCA
126359920 C
1 C
126359921 TAGGACGCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 11 0.23
54 36 0.77
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (53 bp):
CCAGAACAAATAATGTGACACAGCCACCAGAACAGATAAATGTGGCAAAGCCA
Found at i:126361369 original size:24 final size:24
Alignment explanation
Indices: 126361334--126361434 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
126361324 CCAACATTGT
* * *
126361334 TCTCCCTAATCAGCTCTTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
126361358 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
126361382 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
126361406 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
126361430 TCTCC
1 TCTCC
126361435 TGACAGACTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.25, C:0.40, G:0.02, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:126363525 original size:40 final size:40
Alignment explanation
Indices: 126363473--126363567 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
126363463 AGTTGGTATC
*
126363473 GCACACTTAGTGCC-TTATATAGCCGAAACTAT-TCCAACT
1 GCACACTTAGTGCCATT-TATAGCCGAAACTATATCAAACT
* * *
126363512 AGCACACTTAGTGCCATTTGTAGCCGAAGCTATATTAAACT
1 -GCACACTTAGTGCCATTTATAGCCGAAACTATATCAAACT
126363553 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
126363568 AGCATAGTCG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (40 bp):
GCACACTTAGTGCCATTTATAGCCGAAACTATATCAAACT
Found at i:126364848 original size:14 final size:15
Alignment explanation
Indices: 126364829--126364857 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
126364819 CCTACAGAAT
126364829 ATTTTTTAT-TTTTC
1 ATTTTTTATCTTTTC
126364843 ATTTTTTATCTTTTC
1 ATTTTTTATCTTTTC
126364858 TATACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTTTATCTTTTC
Found at i:126366148 original size:43 final size:43
Alignment explanation
Indices: 126366101--126366198 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
126366091 TATGATTACG
* * **
126366101 TGTAAGACCAT-GTCTGGGAC-ATTGGCATCGTTATGTGATTTCA
1 TGTAAGACCATAG-CTGGG-CTATTGGAATCGATATGTGATAACA
*
126366144 TGTAAGACCATAGCTTGGCTATTGGAATCGATATGTGATAACA
1 TGTAAGACCATAGCTGGGCTATTGGAATCGATATGTGATAACA
*
126366187 TGTAAGATCATA
1 TGTAAGACCATA
126366199 TCTAGGATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 1 0.02
43 45 0.96
44 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATTGGAATCGATATGTGATAACA
Found at i:126366528 original size:18 final size:19
Alignment explanation
Indices: 126366488--126366530 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
126366478 TTGTATATGG
*
126366488 CTTACTAAGCTTTTAAGGT
1 CTTACTAAGCTTTTAAGAT
126366507 -TTACTAAGCTTTTAA-AT
1 CTTACTAAGCTTTTAAGAT
126366524 CTTACTA
1 CTTACTA
126366531 TGTGTGTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.44
Consensus pattern (19 bp):
CTTACTAAGCTTTTAAGAT
Found at i:126369404 original size:15 final size:15
Alignment explanation
Indices: 126369384--126369421 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
126369374 CACCCCGAAT
126369384 TTGGGCCTAAAAGTA
1 TTGGGCCTAAAAGTA
126369399 TTGGGCCTAAAAGTA
1 TTGGGCCTAAAAGTA
126369414 TTGGGCCT
1 TTGGGCCT
126369422 TGAGTGTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (15 bp):
TTGGGCCTAAAAGTA
Found at i:126370435 original size:27 final size:27
Alignment explanation
Indices: 126370424--126370607 Score: 215
Period size: 27 Copynumber: 6.8 Consensus size: 27
126370414 ATTACCAAAG
* **
126370424 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
126370451 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
126370478 TACCCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * * *
126370505 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
126370532 TATCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
126370559 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
126370586 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
126370608 TGAAATACCC
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:126370469 original size:54 final size:54
Alignment explanation
Indices: 126370424--126370606 Score: 242
Period size: 54 Copynumber: 3.4 Consensus size: 54
126370414 ATTACCAAAG
* *
126370424 TACCCTCGATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATC-GTTTTACCCTCAATTTACAAAATTACCATTT
* * * * * *
126370478 TACCCTCGATTTATAAAATTATCATTTTACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTT
* * * *
126370532 TATCCTCGATTTACAGAATTATCGTTTTACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTT
126370586 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
126370607 CTGAAATACC
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 111 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTT
Found at i:126370517 original size:81 final size:81
Alignment explanation
Indices: 126370399--126370636 Score: 280
Period size: 81 Copynumber: 2.9 Consensus size: 81
126370389 TACTGAAATG
* * ***
126370399 CCCTTAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
126370464 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * * *
126370480 CCCTCGATTTATAAAATTATCATTTTACCCTCAATTTATAGAATTA-TCGTTTTATCCTCGATTT
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTT
* * *
126370544 ACAGAATTATCGTTTTA
65 ACAAAATTACCATTTTA
* * *** * *
126370561 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTA
1 CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
126370626 CAAAATTACCA
66 CAAAATTACCA
126370637 AAATACCTTC
Statistics
Matches: 127, Mismatches: 28, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
80 1 0.01
81 125 0.98
82 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (81 bp):
CCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:126370616 original size:27 final size:27
Alignment explanation
Indices: 126370559--126370752 Score: 108
Period size: 27 Copynumber: 7.2 Consensus size: 27
126370549 ATTATCGTTT
* * * ***
126370559 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
**
126370586 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
126370613 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
126370640 TACCTTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* ** *
126370667 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
* **
126370694 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
** **
126370721 TACCC-CTGGCTTGGAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
126370748 TACCC
1 TACCC
126370753 CTGATTTGTG
Statistics
Matches: 139, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
26 3 0.02
27 135 0.97
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:126370636 original size:54 final size:54
Alignment explanation
Indices: 126370379--126370610 Score: 234
Period size: 54 Copynumber: 4.3 Consensus size: 54
126370369 AATACTTTAG
* ** * * * ***
126370379 TTTACCAAATTACTGAAATGCCCTTAATTTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCAATTTATAAAATTACCATTTTACCCTCGA
* * * *
126370433 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCAATTTATAAAATTACCATTTTACCCTCGA
* * * * * *
126370487 TTTATAAAATTA-TCATTTTACCCTCAATTTATAGAATTATCGTTTTATCCTCGA
1 TTTACAAAATTACTGA-TTTACCCTCAATTTATAAAATTACCATTTTACCCTCGA
* * *
126370541 TTTACAGAATTA-TCGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACT-GATTTACCCTCAATTTATAAAATTACCATTTTACCCTCGA
126370595 TTTACAAAATTACTGA
1 TTTACAAAATTACTGA
126370611 AATACCCTTG
Statistics
Matches: 143, Mismatches: 32, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
53 1 0.01
54 141 0.99
55 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (54 bp):
TTTACAAAATTACTGATTTACCCTCAATTTATAAAATTACCATTTTACCCTCGA
Found at i:126370753 original size:27 final size:27
Alignment explanation
Indices: 126370600--126370835 Score: 201
Period size: 27 Copynumber: 8.8 Consensus size: 27
126370590 CTCGATTTAC
** * **
126370600 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* * **
126370627 AAAATTACCAAAATA-CCTTCGATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
126370654 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
126370681 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
126370708 AAAATTACCAAAATACCCCTGGCTTGG
1 AAAATTACCAAAATACCCCTGGTTTGT
*
126370735 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * * *
126370762 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* * **
126370789 AAAA-TATCGAAATACCCCT-GTAGGAT
1 AAAATTACCAAAATACCCCTGGTTTG-T
* *
126370815 AGAATTATCAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
126370836 TAGGGTAGAA
Statistics
Matches: 173, Mismatches: 29, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
25 2 0.01
26 21 0.12
27 147 0.85
28 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:126370761 original size:81 final size:79
Alignment explanation
Indices: 126370600--126370943 Score: 254
Period size: 81 Copynumber: 4.3 Consensus size: 79
126370590 CTCGATTTAC
* ** * *
126370600 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATA-CCTTCGATCAGTAAAATTACCA
1 AAAATTACTGAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-G-T-AGGAAAATTACCA
*
126370664 AAATACCCCTGGTTTGT
63 AAATACCCCTGATTTGT
* *
126370681 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCTTGGAAAATTACCAA
1 AAAATTACTGAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-G-TAGGAAAATTACCAA
126370746 AATACCCCTGATTTGT
64 AATACCCCTGATTTGT
* * * * * *
126370762 GAAATTA-TCGAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCTGTAGGATAGAATTATC
1 AAAATTACT-GAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTGTAGGA-A-AATTACC
**
126370824 AAAATACCCCTG-TAGGGT
62 AAAATACCCCTGAT-TTGT
* ** * **
126370842 AGAATTA-TCGAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCCTGTAGGGAAGAATTACC
1 AAAATTACT-GAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGTA-GGAA-AATTACC
* **
126370905 GAAATACCCCTG-TAGCGT
62 AAAATACCCCTGAT-TTGT
* *
126370923 AGAATTACTGAAATATCCCTG
1 AAAATTACTGAAATACCCCTG
126370944 TAGGGTAGAA
Statistics
Matches: 218, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
78 4 0.02
79 4 0.02
80 55 0.25
81 146 0.67
82 9 0.04
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.28
Consensus pattern (79 bp):
AAAATTACTGAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGTAGGAAAATTACCAAAA
TACCCCTGATTTGT
Found at i:126370836 original size:27 final size:27
Alignment explanation
Indices: 126370793--126371037 Score: 350
Period size: 27 Copynumber: 9.1 Consensus size: 27
126370783 ATTTGTAAAA
*
126370793 TATCGAAATACCCCTGTAGGATAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
126370820 TATCAAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
126370847 TATCGAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
126370874 TA-CTGAAATACCCCTGTAGGGAAGAAT
1 TATC-GAAATACCCCTGTAGGGTAGAAT
* *
126370901 TACCGAAATACCCCTGTAGCGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
126370928 TA-CTGAAATATCCCTGTAGGGTAGAAT
1 TATC-GAAATACCCCTGTAGGGTAGAAT
* *
126370955 TATCGAAATACCCTTGTAGGGTAGAAA
1 TATCGAAATACCCCTGTAGGGTAGAAT
126370982 TATCGAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* * * *
126371009 TATCGAGATACCCTTGTGGGGTAAAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
126371036 TA
1 TA
126371038 CCAGTTTGCC
Statistics
Matches: 197, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
26 2 0.01
27 193 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TATCGAAATACCCCTGTAGGGTAGAAT
Found at i:126371278 original size:25 final size:25
Alignment explanation
Indices: 126371244--126371363 Score: 204
Period size: 25 Copynumber: 4.8 Consensus size: 25
126371234 AGGAAGTGCT
*
126371244 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
126371269 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
126371294 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
126371319 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
126371344 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
126371364 ATTAAAAGAG
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 89 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:126383236 original size:27 final size:27
Alignment explanation
Indices: 126382920--126383236 Score: 300
Period size: 27 Copynumber: 11.7 Consensus size: 27
126382910 TTAGTTTACC
* **
126382920 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
*
126382947 AAATTACCAAAATATCCCTAG-TTTGTA
1 AAATTACCAAAATA-CCCTTGATTTGTA
* * *
126382974 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
*
126383001 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
*
126383028 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
126383055 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
126383082 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
** * **
126383109 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
** * *
126383136 AAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
126383163 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *** **
126383190 GAATTACCATTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
126383217 AAATTACCAAAATACCCTTG
1 AAATTACCAAAATACCCTTG
126383237 TAGGGTAGAA
Statistics
Matches: 248, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.02
27 237 0.96
28 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:126383251 original size:27 final size:27
Alignment explanation
Indices: 126383221--126383355 Score: 175
Period size: 27 Copynumber: 5.0 Consensus size: 27
126383211 TTTACAAAAT
*
126383221 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
126383248 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
126383275 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
126383302 TACTGAAATACTCC-TGTAAGGTAGAAT
1 TACCGAAATAC-CCTTGTAGGGTAGAAA
* *
126383329 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
126383355 T
1 T
126383356 TACCATTTTA
Statistics
Matches: 96, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.05
27 89 0.93
28 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:126383720 original size:33 final size:32
Alignment explanation
Indices: 126383671--126383734 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
126383661 CTCGCTGCAA
* *
126383671 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
126383704 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
126383735 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:126383748 original size:27 final size:26
Alignment explanation
Indices: 126383696--126383755 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
126383686 ACATATATAT
*
126383696 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
126383722 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
126383749 ATATCTG
1 ATATCTG
126383756 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:126383883 original size:6 final size:6
Alignment explanation
Indices: 126383874--126384057 Score: 153
Period size: 6 Copynumber: 29.8 Consensus size: 6
126383864 TTGCATTCAC
* *
126383874 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATTACCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* *
126383924 ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * *
126383973 -TTACCTA ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
126384023 ATTCTG ATTCTG ATTCTG ATTCTA ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
126384058 AGTTTTAATA
Statistics
Matches: 146, Mismatches: 17, Indels: 30
0.76 0.09 0.16
Matches are distributed among these distances:
5 10 0.07
6 115 0.79
7 13 0.09
8 8 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:126383901 original size:19 final size:19
Alignment explanation
Indices: 126383877--126383966 Score: 76
Period size: 19 Copynumber: 4.5 Consensus size: 19
126383867 CATTCACATT
126383877 CTGATTCTGTTACCTGATA
1 CTGATTCTGTTACCTGATA
* *
126383896 CTGATTCTGATTCTATTACCTAATT
1 CTGATTCTG------TTACCTGATA
*
126383921 CTGATTCTGGTT--CTGATT
1 CTGATTCT-GTTACCTGATA
126383939 CTGATTCTGTTACCTGATA
1 CTGATTCTGTTACCTGATA
126383958 CTGATTCTG
1 CTGATTCTG
126383967 ATTCTGTTAC
Statistics
Matches: 58, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
17 3 0.05
18 13 0.22
19 23 0.40
20 2 0.03
25 16 0.28
26 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (19 bp):
CTGATTCTGTTACCTGATA
Found at i:126383902 original size:25 final size:25
Alignment explanation
Indices: 126383874--126383935 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
126383864 TTGCATTCAC
*
126383874 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTAATACTG
* *
126383899 ATTCTGATTCTATTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTG
*
126383924 ATTCTGGTTCTG
1 ATTCTGATTCTG
126383936 ATTCTGATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTG
Found at i:126383938 original size:37 final size:37
Alignment explanation
Indices: 126383890--126383972 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
126383880 ATTCTGTTAC
* *
126383890 CTGATACTGATTCTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
* * *
126383927 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
126383964 CTGATTCTG
1 CTGATTCTG
126383973 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
Found at i:126383963 original size:25 final size:25
Alignment explanation
Indices: 126383933--126383994 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
126383923 GATTCTGGTT
*
126383933 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
126383958 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
126383983 CTGATTCTGATT
1 CTGATTCTGATT
126383995 TTGATTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:126383993 original size:37 final size:37
Alignment explanation
Indices: 126383952--126384045 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
126383942 ATTCTGTTAC
* *
126383952 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
126383989 CTGATTTTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
126384026 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
126384046 AATTTTGATT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:126384034 original size:62 final size:62
Alignment explanation
Indices: 126383874--126384034 Score: 268
Period size: 62 Copynumber: 2.6 Consensus size: 62
126383864 TTGCATTCAC
* *
126383874 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
*
126383936 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTTTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
* * *
126383998 ATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTG
1 ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
126384035 ATTCTGATTC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 93 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
Found at i:126384063 original size:12 final size:12
Alignment explanation
Indices: 126384015--126384063 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
126384005 TTCTGTCACC
* *
126384015 TGATTCTGATTC
1 TGATTCTAATTT
* *
126384027 TGATTCTGATTC
1 TGATTCTAATTT
126384039 TGATTCTAATTT
1 TGATTCTAATTT
*
126384051 TGATTCTAGTTT
1 TGATTCTAATTT
126384063 T
1 T
126384064 AATAATGCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.18, C:0.12, G:0.14, T:0.55
Consensus pattern (12 bp):
TGATTCTAATTT
Found at i:126386974 original size:14 final size:14
Alignment explanation
Indices: 126386955--126386982 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
126386945 ATATTTATTT
126386955 TATGAAATTATTCA
1 TATGAAATTATTCA
126386969 TATGAAATTATTCA
1 TATGAAATTATTCA
126386983 AAGAAGACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TATGAAATTATTCA
Found at i:126387189 original size:55 final size:54
Alignment explanation
Indices: 126387082--126387335 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 54
126387072 TTAGGGTTTA
* * *
126387082 AAGG-TACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAGTTTTATAAGGC
* * * * *
126387136 AAGGATATCATGTAATACCATGTCAAGACATGACATTGATAAGTTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTTTATAAGGC
* * * * * *
126387191 AAAGG-TCCCATGTAAGGCCATGCCAAGGCATGGCATTGGTGAG-TTCAGAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTATAAGGC
* * *
126387244 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTATAAGGC
* * * * *
126387293 TAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
126387336 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
49 39 0.24
52 6 0.04
53 42 0.25
54 12 0.07
55 62 0.38
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTATAAGGC
Found at i:126387273 original size:108 final size:110
Alignment explanation
Indices: 126387081--126387337 Score: 309
Period size: 108 Copynumber: 2.4 Consensus size: 110
126387071 ATTAGGGTTT
* *
126387081 AAAGGTACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCA
1 AAAGGTACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCGAAGGCAAGGATACCA
* *
126387146 TGTAATACCATGTCAAGACATGACATTGATAAGTTTTTATAAGGC
66 TGTAAGACCATGTCAAGACATGACAATGATAAGTTTTTATAAGGC
* * *
126387191 AAAGGTCCCATGTAAGGCCATGCCAAGGCATGGC-ATTGGTGA-G-TTCAGAAGGCAAGGATACC
1 AAAGGTACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-GAAGGCAAGGATACC
* * **
126387253 ATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAAT-AGG-
65 ATGTAAGACCATGTCAAGACATGACAATGATAAGTTTTTATAAGGC
* * *
126387297 --A--TACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 AAAGGTACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
126387338 ACCCGTGTAT
Statistics
Matches: 126, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
102 29 0.23
103 2 0.02
104 1 0.01
107 6 0.05
108 49 0.39
109 7 0.06
110 32 0.25
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
AAAGGTACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCGAAGGCAAGGATACCA
TGTAAGACCATGTCAAGACATGACAATGATAAGTTTTTATAAGGC
Found at i:126400820 original size:30 final size:30
Alignment explanation
Indices: 126400786--126400846 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
126400776 TTCCCGAGCC
126400786 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
126400816 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
126400846 T
1 T
126400847 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:126401670 original size:64 final size:63
Alignment explanation
Indices: 126401583--126401767 Score: 174
Period size: 67 Copynumber: 2.9 Consensus size: 63
126401573 AGACATTATG
*
126401583 ATGTAGCTAGGTCACATGGGTGATATTATGTGTACACCATGTAAACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCACATGGGTGATATTATGTGTACACCATGTAAACAAGAGAGCTACGAGATA
** * * * * *
126401646 TATGTAGCTAGGTTGCATGCGTGAT-TCCAGGTGAAGAACACCATGTAGACAAGAGAGCTACGAG
1 -ATGTAGCTAGGTCACATGGGTGATAT-TA--TG-TGTACACCATGTAAACAAGAGAGCTACGAG
126401710 ATA
61 ATA
** * * * * **
126401713 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCT
1 ATGTAGCTAGGTCACATGGGTGATATTATGTGTACACCATGTAAACAAGAGAGCT
126401768 GAACTATATG
Statistics
Matches: 94, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
63 21 0.22
64 23 0.24
66 21 0.22
67 29 0.31
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCACATGGGTGATATTATGTGTACACCATGTAAACAAGAGAGCTACGAGATA
Found at i:126405758 original size:40 final size:40
Alignment explanation
Indices: 126405709--126405858 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 40
126405699 CTAAGCTAGA
126405709 CGAA-GCATTCGTGCGAGTTGATATATCCGGGCTAAGACC
1 CGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACC
126405748 CGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACC
1 CGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACC
* * * * * * * *
126405788 CGAAGGCCTTTGTGCAAG-TCACCAAATCCGGGTTATGACC
1 CGAAGGCATTCGTGCGAGTTGA-TATATCCGGGCTAAGACC
* * *
126405828 CGAAGGCAATCGTGCGAGTCGCTATATCCGG
1 CGAAGGCATTCGTGCGAGTTGATATATCCGG
126405859 TTAAATCCCG
Statistics
Matches: 91, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.07
40 85 0.93
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACC
Found at i:126413836 original size:40 final size:40
Alignment explanation
Indices: 126413781--126414030 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
126413771 AACATTGGAA
126413781 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
126413821 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
126413861 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
126413901 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
126413941 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
126413980 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
126414021 CTATATCCGG
1 ATATATCCGG
126414031 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:126424473 original size:27 final size:27
Alignment explanation
Indices: 126424440--126424600 Score: 205
Period size: 27 Copynumber: 6.0 Consensus size: 27
126424430 TAGAATACTT
* *
126424440 TAGTTTATCAAATTACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
126424467 TGGTTTACAAAATTACTAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * *
126424494 TGGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
126424521 TAGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
126424548 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
126424575 TAATTTGTAAAATTACTAAAATACCC
1 TAGTTTATAAAATTACCAAAATACCC
126424601 TCGACCCGTA
Statistics
Matches: 119, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:126424515 original size:54 final size:54
Alignment explanation
Indices: 126424440--126424600 Score: 232
Period size: 54 Copynumber: 3.0 Consensus size: 54
126424430 TAGAATACTT
* * * *
126424440 TAGTTTATCAAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTATAAAATTACTAAAATACCCC
* * *
126424494 TGGTTTGTAAAATTACTAAAATACCCTTAGTTTATAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTATAAAATTACTAAAATACCCC
* * *
126424548 TAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCC
1 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTATAAAATTACTAAAATACCC
126424601 TCGACCCGTA
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (54 bp):
TAGTTTGTAAAATTACCAAAATACCCTTAGTTTATAAAATTACTAAAATACCCC
Found at i:126424574 original size:81 final size:81
Alignment explanation
Indices: 126424439--126424601 Score: 254
Period size: 81 Copynumber: 2.0 Consensus size: 81
126424429 TTAGAATACT
* * * * **
126424439 TTAGTTTATCAAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCCTGGTTTGTAA
1 TTAGTTTATAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTAATTTGTAA
126424504 AATTACTAAAATACCC
66 AATTACTAAAATACCC
**
126424520 TTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
1 TTAGTTTATAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTAATTTGTAA
126424585 AATTACTAAAATACCC
66 AATTACTAAAATACCC
126424601 T
1 T
126424602 CGACCCGTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (81 bp):
TTAGTTTATAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTAATTTGTAA
AATTACTAAAATACCC
Found at i:126424611 original size:27 final size:27
Alignment explanation
Indices: 126424554--126424655 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
126424544 CCCCTAGTTT
* ***
126424554 GTAAAATTACCAAAATACCC-CTAATTT
1 GTAAAATTACTAAAATACCCTC-AACCC
*
126424581 GTAAAATTACTAAAATACCCTCGACCC
1 GTAAAATTACTAAAATACCCTCAACCC
* * **
126424608 GTAAAATTATTGAAATACCCTCAACTT
1 GTAAAATTACTAAAATACCCTCAACCC
* *
126424635 GTAAAATTACCAAAGTACCCT
1 GTAAAATTACTAAAATACCCT
126424656 TGATTTACAG
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCTCAACCC
Found at i:126424612 original size:54 final size:53
Alignment explanation
Indices: 126424449--126424654 Score: 180
Period size: 54 Copynumber: 3.8 Consensus size: 53
126424439 TTAGTTTATC
* ** * * *
126424449 AAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCCC-GATTTGTA
* * * *
126424503 AAATTACTAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCCCGA-TTTGTA
* * ***
126424557 AAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTCGACCCGTA
1 AAATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCC-CGATTTGTA
*** * * *
126424611 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCT-AATTTATAAAATTACCAAAATACCC
126424655 TTGATTTACA
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
53 4 0.03
54 122 0.95
55 2 0.02
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTAATTTATAAAATTACCAAAATACCCCGATTTGTA
Found at i:126424613 original size:81 final size:81
Alignment explanation
Indices: 126424449--126424654 Score: 218
Period size: 81 Copynumber: 2.5 Consensus size: 81
126424439 TTAGTTTATC
* * ** * **
126424449 AAATTACCAAAATACCCTTGGTTTACAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
* ***
126424514 ATACCCTTAGTTTATA
66 ATACCCTGAGCCCATA
126424530 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
*
126424595 ATACCCTCGA-CCCGTA
66 ATACCCT-GAGCCCATA
*** ** *
126424611 AAATTATTGAAATA-CCCTCAACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC
126424655 TTGATTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 4 0.04
81 100 0.95
82 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
ATACCCTGAGCCCATA
Found at i:126424721 original size:27 final size:26
Alignment explanation
Indices: 126424699--126424857 Score: 117
Period size: 27 Copynumber: 5.9 Consensus size: 26
126424689 ACAAAATCAT
126424699 CGAAATACCCTTGTAGGGTAAAAATAC
1 CGAAATACCCTTGTAGGGT-AAAATAC
*
126424726 CGAAATA-CCTCTATAGGGTAGAAATAC
1 CGAAATACCCT-TGTAGGGTA-AAATAC
* *
126424753 CGAAATGCCCTTGTAAGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTA-AAATAC
* * *
126424780 CAAAATACACC-TATAGGGTAGAATTAC
1 CGAAATAC-CCTTGTAGGGTA-AAATAC
* * * *
126424807 TGAAATACTCC-TGTAAGGTAGAATTAT
1 CGAAATAC-CCTTGTAGGGTA-AAATAC
* *
126424834 CGAGATACCCTTGTGGGGTAAAAT
1 CGAAATACCCTTGTAGGGTAAAAT
126424858 TACCATTTTA
Statistics
Matches: 107, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
26 9 0.08
27 93 0.87
28 5 0.05
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (26 bp):
CGAAATACCCTTGTAGGGTAAAATAC
Found at i:126424827 original size:54 final size:54
Alignment explanation
Indices: 126424699--126424829 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 54
126424689 ACAAAATCAT
* * *
126424699 CGAAATACCCTTGTAGGGTAAAAATACCGAAATACCTCTATAGGGTAGAAATAC
1 CGAAATACCCTTGTAAGGTAGAAATACCAAAATACCTCTATAGGGTAGAAATAC
* *
126424753 CGAAATGCCCTTGTAAGGTAGAAATACCAAAATACAC-CTATAGGGTAGAATTAC
1 CGAAATACCCTTGTAAGGTAGAAATACCAAAATAC-CTCTATAGGGTAGAAATAC
*
126424807 TGAAATACTCC-TGTAAGGTAGAA
1 CGAAATAC-CCTTGTAAGGTAGAA
126424830 TTATCGAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
54 65 0.96
55 3 0.04
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (54 bp):
CGAAATACCCTTGTAAGGTAGAAATACCAAAATACCTCTATAGGGTAGAAATAC
Found at i:126425405 original size:6 final size:6
Alignment explanation
Indices: 126425396--126425588 Score: 155
Period size: 6 Copynumber: 31.3 Consensus size: 6
126425386 TTGCATTCAC
* *
126425396 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
126425446 ATTCTG ATTCTG GTTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
126425495 ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
126425545 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
126425589 AATGTTTCTT
Statistics
Matches: 151, Mismatches: 19, Indels: 34
0.74 0.09 0.17
Matches are distributed among these distances:
5 11 0.07
6 118 0.78
7 14 0.09
8 8 0.05
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:126425427 original size:25 final size:25
Alignment explanation
Indices: 126425399--126425463 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
126425389 CATTCACATT
*
126425399 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
* *
126425424 CTGATTCTGATTCTATTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
126425449 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
126425464 ATTCTAATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:126425465 original size:37 final size:37
Alignment explanation
Indices: 126425418--126425500 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
126425408 ATTCTGTTAC
* * *
126425418 CTGATACTGATTCTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTATTACCTAATACTGATT
* * *
126425455 CTGGTTCTGATTCTAATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTAATTCTATTACCTAATACTGATT
126425492 CTGATTCTG
1 CTGATTCTG
126425501 TTACCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTATTACCTAATACTGATT
Found at i:126425494 original size:62 final size:62
Alignment explanation
Indices: 126425397--126425588 Score: 280
Period size: 62 Copynumber: 3.1 Consensus size: 62
126425387 TGCATTCACA
126425397 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
* * *
126425459 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
* * * * * *
126425521 TTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT-ATTACCTAATTCTGATTCTGG
126425582 TTCTGAT
1 TTCTGAT
126425589 AATGTTTCTT
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
61 19 0.16
62 96 0.82
63 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
Found at i:126425498 original size:25 final size:25
Alignment explanation
Indices: 126425461--126425525 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
126425451 GATTCTGGTT
* *
126425461 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
126425486 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
126425511 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
126425526 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:126431164 original size:55 final size:53
Alignment explanation
Indices: 126431037--126431228 Score: 141
Period size: 55 Copynumber: 3.6 Consensus size: 53
126431027 CCATTACCAA
* * *
126431037 GTCTTGAGATGGTCTTACATGGTATCCTTACCTTATGAGCTCACCATTGCCAT
1 GTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAGCTCACCAATGCCAT
* ** * * * * *
126431090 GCCTTGGTATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCAT
1 GTCTTGACATGGTCTTACATGGGATCCTTACCTTAT-G-AGCTCACCAATGCCAT
*** * * * *
126431145 GTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAAAACTTACCAATGCCAT
1 GTCTTGACATGGTCTTACATGGGATCCTTACCTTAT-GAGCTCACCAATGCCAT
** * * * *
126431199 CCCTTGGCATGGACTTACTTGGTATCCTTA
1 GTCTTGACATGGTCTTACATGGGATCCTTA
126431229 AACCCTAATG
Statistics
Matches: 108, Mismatches: 29, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 30 0.28
54 36 0.33
55 42 0.39
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (53 bp):
GTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAGCTCACCAATGCCAT
Found at i:126436327 original size:25 final size:25
Alignment explanation
Indices: 126436283--126436330 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
126436273 TTATAACATG
* **
126436283 AAAATGACCATTTTGTCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
126436308 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
126436331 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:126436414 original size:11 final size:11
Alignment explanation
Indices: 126436378--126436433 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
126436368 CATGGTATGT
126436378 ATGATATGCAC
1 ATGATATGCAC
* *
126436389 ATGACATG--T
1 ATGATATGCAC
126436398 ATGATATGCAC
1 ATGATATGCAC
*
126436409 ATGATATG--T
1 ATGATATGCAC
126436418 ATGATATGCAC
1 ATGATATGCAC
126436429 ATGAT
1 ATGAT
126436434 GTAATTATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:126436433 original size:20 final size:20
Alignment explanation
Indices: 126436367--126436433 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
126436357 ATTTTGATAA
*
126436367 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
126436387 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
126436407 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
126436427 ACATGAT
1 ACATGAT
126436434 GTAATTATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:126436604 original size:24 final size:23
Alignment explanation
Indices: 126436484--126436602 Score: 193
Period size: 23 Copynumber: 5.1 Consensus size: 23
126436474 AGGAAGTGTA
126436484 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
126436507 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
126436530 AAAGGGCTTATACCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
126436553 AAAGGGCTTATGCCCCTGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
126436576 AAAAGGGATTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
126436600 AAA
1 AAA
126436603 AGAGGCTAGG
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
23 69 0.78
24 20 0.22
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:126436855 original size:31 final size:31
Alignment explanation
Indices: 126436817--126436877 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
126436807 CGTTTACAAT
*
126436817 AAAGGCTTCGGCCGAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
126436848 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
126436878 GAATATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:126439065 original size:40 final size:40
Alignment explanation
Indices: 126439020--126439149 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
126439010 CGGAATACAA
126439020 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
126439060 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
126439100 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
126439140 CCGGATATAA
1 CCGGATATAA
126439150 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:126439164 original size:40 final size:40
Alignment explanation
Indices: 126439020--126439183 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
126439010 CGGAATACAA
* **
126439020 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
126439060 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
126439100 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
126439140 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
126439180 CCGG
1 CCGG
126439184 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:126444610 original size:55 final size:53
Alignment explanation
Indices: 126444487--126444652 Score: 143
Period size: 55 Copynumber: 3.1 Consensus size: 53
126444477 CTTACAATTT
* * * * *
126444487 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTATGAACTCACCATTG
1 CCATGTCTAGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
* * * * * * *
126444540 CCATGCCTCGCCATGGTCTTACATGGGATCTTTGCCTTATAGCAGCTTATCAATG
1 CCATGTCTAGACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCACCAATG
*** * * *
126444595 CCATGTCTAGACATGGTCTTACATGATTTCCTTGCCTTGTAAAGCTTACCAATG
1 CCATGTCTAGACATGGTCTTACATGGGATCCTTGCCTTATGAA-CTCACCAATG
126444649 CCAT
1 CCAT
126444653 ACCTTGGCAT
Statistics
Matches: 88, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
53 34 0.39
54 14 0.16
55 40 0.45
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (53 bp):
CCATGTCTAGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATG
Found at i:126446458 original size:21 final size:21
Alignment explanation
Indices: 126446429--126446488 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
126446419 AGCTGAACGA
* *
126446429 AAACCCATAAGGGTTAAACTG
1 AAACTCATAAGAGTTAAACTG
*
126446450 AAACTCATATGAGTT-AACTG
1 AAACTCATAAGAGTTAAACTG
* *
126446470 AAGCTCATGAGAGTTAAAC
1 AAACTCATAAGAGTTAAAC
126446489 AAAAAGTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (21 bp):
AAACTCATAAGAGTTAAACTG
Found at i:126452603 original size:25 final size:26
Alignment explanation
Indices: 126452551--126452603 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
126452541 CCCTTATAAT
* *
126452551 GTGAAAATGACCTTTTTTTACCCCTAG
1 GTGAAAATGACC-TATTATACCCCTAG
126452578 GTGAAAATGACC-ATTATACCCCTAG
1 GTGAAAATGACCTATTATACCCCTAG
126452603 G
1 G
126452604 GTTATGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 12 0.50
27 12 0.50
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GTGAAAATGACCTATTATACCCCTAG
Found at i:126452659 original size:10 final size:10
Alignment explanation
Indices: 126452644--126452682 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
126452634 TGCTTCTGTA
126452644 CATGATATGC
1 CATGATATGC
126452654 CATGATATGC
1 CATGATATGC
126452664 ACATGATATGC
1 -CATGATATGC
126452675 CATGATAT
1 CATGATAT
126452683 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:126452668 original size:21 final size:21
Alignment explanation
Indices: 126452643--126452682 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
126452633 CTGCTTCTGT
126452643 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
126452664 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
126452683 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:126454059 original size:144 final size:144
Alignment explanation
Indices: 126453796--126454167 Score: 439
Period size: 144 Copynumber: 2.6 Consensus size: 144
126453786 TATGTGTGCC
* **
126453796 AGTGTAAGACCATGTCTAGGACATGGCATTGGCCACGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTCACCACGATATGAGAGCCAGTGTAAGACCATGTTT
* * * * *
126453861 GGAACATGGCATTGGCAATGTTGTGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCATCAACG
66 GGAACATGGCATCGACAATGTAGCGAGAGCCAATGTAAGACCATGTCTGAGACATGGCATCAAC-
* *
126453926 A-TGTTG-TGAGAGCT
130 ATTG-AGATAAGAGCT
* *
126453940 AGTGTAAGACCATGTCTGGGATATGGCATTCACCAC-ATTATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTCACCACGA-TATGAGAGCCAGTGTAAGACCATGTT
* * * * * * **
126454004 TGGGACATGGTATCGACATTG-AGACGAGAGCTAATGTCAGACCATGTCTGGGACATGGCATCGG
65 TGGAACATGGCATCGACAATGTAG-CGAGAGCCAATGTAAGACCATGTCTGAGACATGGCATCAA
126454068 CATTGAGATAAGAGCT
129 CATTGAGATAAGAGCT
* * * * *
126454084 ACTGTAAGACCATGTCTGGGACATGGTA-TCGACCTCGACATGTGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTC-ACCACGATATGAGAGCCAGTGTAAGACCATGTT
126454148 TGGAACATGGCATCGACAAT
65 TGGAACATGGCATCGACAAT
126454168 TCAACCTCTT
Statistics
Matches: 192, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
143 6 0.03
144 185 0.96
145 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTCACCACGATATGAGAGCCAGTGTAAGACCATGTTT
GGAACATGGCATCGACAATGTAGCGAGAGCCAATGTAAGACCATGTCTGAGACATGGCATCAACA
TTGAGATAAGAGCT
Found at i:126454163 original size:48 final size:48
Alignment explanation
Indices: 126453784--126454165 Score: 344
Period size: 48 Copynumber: 8.0 Consensus size: 48
126453774 CCATTCGGGT
* * * * *
126453784 GATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCCA-C
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGACATC
* * * *
126453832 GATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCAAT-
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATC
* * * *
126453880 GTTGTGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCATCAACGAT-
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATC
* * * *
126453928 GTTGTGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATTC-ACCA-C
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGA-CATC
* *
126453976 -ATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGACATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* * * * * * *
126454024 GAGACGAGAGCTAATGTCAGACCATGTCTGGGACATGGCATCGGCATT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* * * * * *
126454072 GAGATAAGAGCTACTGTAAGACCATGTCTGGGACATGGTATCGACCTC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
* * * *
126454120 GACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACA
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
126454166 ATTCAACCTC
Statistics
Matches: 276, Mismatches: 49, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
47 7 0.03
48 265 0.96
49 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
Found at i:126457820 original size:21 final size:21
Alignment explanation
Indices: 126457751--126457826 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
126457741 CATCATGAAC
*
126457751 TCAGACCATAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* **
126457772 TCAGATGCCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
126457796 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
126457817 TCAGATCACA
1 TCAGACCACA
126457827 TAATTCCTAG
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
20 2 0.05
21 19 0.45
22 5 0.12
23 4 0.10
24 10 0.24
25 2 0.05
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:126458384 original size:20 final size:20
Alignment explanation
Indices: 126458357--126458435 Score: 70
Period size: 20 Copynumber: 4.0 Consensus size: 20
126458347 CGAGCTTGCC
*
126458357 AGTAGTTCATCCGTATAAAT
1 AGTAATTCATCCGTATAAAT
* * **
126458377 ATTAGTTCATTAGTA-ATAAT
1 AGTAATTCATCCGTATA-AAT
* *
126458397 AGTAATTCCTCCGTATTAAT
1 AGTAATTCATCCGTATAAAT
*
126458417 AGTAATTCATCCATATAAA
1 AGTAATTCATCCGTATAAA
126458436 CACATATTGT
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.98
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (20 bp):
AGTAATTCATCCGTATAAAT
Found at i:126459901 original size:29 final size:29
Alignment explanation
Indices: 126459867--126460027 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
126459857 TACTCGATTT
** * *
126459867 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
126459896 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
126459925 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
126459954 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
126459983 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
126460012 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
126460028 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:126475254 original size:40 final size:39
Alignment explanation
Indices: 126475089--126475262 Score: 136
Period size: 40 Copynumber: 4.4 Consensus size: 39
126475079 AAATTGAATG
* * *
126475089 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
126475129 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
126475169 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
126475209 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
*
126475248 GATATCCGGGTTAAG
1 -ATATCCGGGCTAAG
126475263 TCCCATAGGC
Statistics
Matches: 105, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 96 0.91
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:126476450 original size:46 final size:46
Alignment explanation
Indices: 126476383--126476560 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
126476373 AATAGCCCGC
* *
126476383 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
126476429 CCATAAGTGAACTCGGACTCAATTCAACGAGCTCGGATGCTTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * ** *
126476475 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAC
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
126476522 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
126476561 CTCAACCATC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
46 72 0.69
47 33 0.31
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:126476495 original size:93 final size:93
Alignment explanation
Indices: 126476391--126476562 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
126476381 GCCCATAAGT
* * *** * *
126476391 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAATTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCACCCATAAGTGAACTCGGACTCAACTCAA
126476456 CGAGCTCGGATGCTTAGTTACATCTCTC
66 CGAGCTCGGATGCTTAGTTACATCTCTC
*
126476484 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCACCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCACCCATAAGTGAACTCGGACTCAACTCAA
*
126476549 CGAGTTCGGATGCT
66 CGAGCTCGGATGCT
126476563 CAACCATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCACCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCTTAGTTACATCTCTC
Found at i:126480940 original size:29 final size:29
Alignment explanation
Indices: 126480907--126481038 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
126480897 GTGACGAGAT
126480907 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
126480936 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
126480965 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
126480994 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
126481023 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
126481039 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:126489334 original size:29 final size:29
Alignment explanation
Indices: 126489300--126489431 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
126489290 TACTCGATTT
** * *
126489300 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
126489329 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
126489358 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
126489387 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
126489416 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
126489432 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:126493835 original size:46 final size:45
Alignment explanation
Indices: 126493782--126493958 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
126493772 TGGTTGAGCA
126493782 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAA-G
* *** * *
126493828 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGAT--GTAACTAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGGT-GCGAAG
* * * *
126493873 CATCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAA-G
* * *
126493921 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGG
126493959 CGGGCTATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
45 3 0.03
46 68 0.65
47 32 0.31
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAAG
Found at i:126493937 original size:93 final size:93
Alignment explanation
Indices: 126493778--126493949 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
126493768 AGGATGGTTG
* * *** *
126493778 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGGTGCGAATGTCCGAACTCGTTGAG
1 AGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
*
126493843 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
126493871 AGCATCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 AGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
126493936 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
126493950 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
AGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:126495460 original size:40 final size:39
Alignment explanation
Indices: 126495352--126495479 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
126495342 TCTTCAGAAT
* * *
126495352 TTAG-CCGGATATAACCGCAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* *
126495391 TTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* * *
126495431 TTAGCCCGGATATAATCACTAGCATAAATGCCTTTGGGGC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
126495471 TTAGCCCGG
1 TTAGCCCGG
126495480 GTATCATTCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.05
40 71 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:126497382 original size:29 final size:29
Alignment explanation
Indices: 126497348--126497479 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
126497338 TACTCGATTT
* * *
126497348 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCATAC-ATTTCCAGCA
* ** * *
126497377 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACATTTCCAGCA
*
126497406 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACATTTCCAGCA
*
126497435 TGCACACTTAGTGCCATACATTTCCAGCA
1 CGCACACTTAGTGCCATACATTTCCAGCA
126497464 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
126497480 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCCAGCA
Found at i:126499453 original size:42 final size:43
Alignment explanation
Indices: 126499401--126499481 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 43
126499391 TGAGTTTACG
* *
126499401 TGTAGGACCATATCTAGGATA-TGGAATCGATATGAGATTTTT
1 TGTAAGACCATAGCTAGGATATTGGAATCGATATGAGATTTTT
* * * *
126499443 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGAT
1 TGTAAGACCATAGCTAGGATATTGGAATCGATATGAGAT
126499482 CCCATGTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 17 0.53
43 15 0.47
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATAGCTAGGATATTGGAATCGATATGAGATTTTT
Found at i:126503581 original size:79 final size:81
Alignment explanation
Indices: 126503417--126503601 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
126503407 TCGAATGATG
* * *
126503417 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
126503481 CGTGCGAGTTAATAAA
66 CGTGCGAGTCAATAAA
* * **
126503497 TCCGGGCTAAG-CCCAAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
126503559 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATA-AA
**
126503577 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
126503602 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATAAA
Found at i:126503609 original size:40 final size:40
Alignment explanation
Indices: 126503418--126503609 Score: 142
Period size: 40 Copynumber: 4.8 Consensus size: 40
126503408 CGAATGATGT
* * * * *
126503418 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
126503458 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * * *
126503498 CCGGGCTAAG-CCCAAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
126503537 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
126503577 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
126503610 GTTATATCCG
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 32 0.26
40 81 0.65
41 11 0.09
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:126503632 original size:79 final size:79
Alignment explanation
Indices: 126503469--126503634 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
126503459 CGGACTAGGA
* * *
126503469 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCAAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCAAAGGCATTTGAGCAAGTCACTA
*
126503534 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * * **
126503548 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCAAAGGCATTTGAGCAAGTCAC
* *
126503612 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
126503627 TCCGAAGG
1 TCCGAAGG
126503635 TACGTGATTC
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 45 0.64
80 25 0.36
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCAAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:126505725 original size:30 final size:30
Alignment explanation
Indices: 126505644--126505717 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
126505634 ATGGTTGTCA
* **
126505644 CCATCGCTTTTCATAAAGGGATAGCCAAAG
1 CCATCCCTTTTCATAAATTGATAGCCAAAG
*
126505674 CTATCCCTTTTCATAAATTGATAGCCAAAG
1 CCATCCCTTTTCATAAATTGATAGCCAAAG
126505704 CCATCCCTTTTCAT
1 CCATCCCTTTTCAT
126505718 TTTTTGATGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (30 bp):
CCATCCCTTTTCATAAATTGATAGCCAAAG
Found at i:126511210 original size:40 final size:40
Alignment explanation
Indices: 126511148--126511242 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
126511138 ACCATGTTCG
126511148 GCACTAAGTGTGCG-ATTCAAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAA-A
* *
126511188 GCACTAAGTGTGCGAATT-AAAATAGCTTTGGCTATATAA
1 GCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAAA
126511227 GCCACTAAGTGTGCGA
1 G-CACTAAGTGTGCGA
126511243 TACCGAGATA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.04
40 46 0.90
41 3 0.06
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAAA
Found at i:126511329 original size:17 final size:17
Alignment explanation
Indices: 126511307--126511340 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
126511297 GCTTCGGCTA
126511307 ATCATTAATGCACTAAG
1 ATCATTAATGCACTAAG
126511324 ATCATTAATGCACTAAG
1 ATCATTAATGCACTAAG
126511341 TTTGCGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
ATCATTAATGCACTAAG
Found at i:126511457 original size:20 final size:20
Alignment explanation
Indices: 126511434--126511496 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
126511424 GGAAATATCA
126511434 GGTATGTACGATACCTATGT
1 GGTATGTACGATACCTATGT
* *
126511454 GGTA-G-ATGATA-CTATATT
1 GGTATGTACGATACCTAT-GT
126511472 AGGTATGTACGATACCTATGT
1 -GGTATGTACGATACCTATGT
126511493 GGTA
1 GGTA
126511497 AATAATACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 4 0.12
18 6 0.18
19 5 0.15
20 9 0.26
21 6 0.18
22 4 0.12
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (20 bp):
GGTATGTACGATACCTATGT
Found at i:126511487 original size:39 final size:39
Alignment explanation
Indices: 126511428--126511507 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
126511418 AATACGGGAA
* *
126511428 ATATCAGGTATGTACGATACCTATGTGGTAGATGATACT
1 ATATCAGGTATGTACGATACCTATGTGGTAAATAATACT
*
126511467 ATATTAGGTATGTACGATACCTATGTGGTAAATAATACT
1 ATATCAGGTATGTACGATACCTATGTGGTAAATAATACT
126511506 AT
1 AT
126511508 GTCTATGAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (39 bp):
ATATCAGGTATGTACGATACCTATGTGGTAAATAATACT
Found at i:126514562 original size:46 final size:46
Alignment explanation
Indices: 126514509--126514599 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
126514499 TTGATGTTAT
126514509 TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAAA
1 TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAAA
*
126514555 TACCTTTTGATGAGTTTGATATAATTTTGGGTATGGATTGGTTAA
1 TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAA
126514600 CTTTGCATGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.45
Consensus pattern (46 bp):
TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAAA
Found at i:126516309 original size:40 final size:40
Alignment explanation
Indices: 126516254--126516402 Score: 210
Period size: 40 Copynumber: 3.7 Consensus size: 40
126516244 ACTACTTGCT
*
126516254 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
126516294 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
126516334 CAAATGCCTTCGGGACTTAGCGCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
126516374 CAAATGCCTTCGGGACTTAGCTCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
126516403 CATCCGAATA
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 95 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:126524271 original size:40 final size:40
Alignment explanation
Indices: 126524218--126524364 Score: 212
Period size: 40 Copynumber: 3.7 Consensus size: 40
126524208 ACTACTTGCT
*
126524218 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
126524258 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
126524298 CAAATGCCTTCGGGACTTAGCCCGG--A-ATTACCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTA--ACTCGCA
126524337 CAAATGCCTTC-GGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
126524365 CATCGAATAT
Statistics
Matches: 98, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
37 3 0.03
38 14 0.14
39 17 0.17
40 64 0.65
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:126527013 original size:40 final size:40
Alignment explanation
Indices: 126526956--126527175 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
126526946 TCGAATGATG
* * *
126526956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
126526996 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126527036 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126527075 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126527115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-T--A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126527152 T-C-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
126527176 AAAGTAGTAT
Statistics
Matches: 164, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
35 20 0.12
36 1 0.01
37 2 0.01
39 36 0.22
40 97 0.59
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:126527092 original size:79 final size:80
Alignment explanation
Indices: 126526956--126527149 Score: 277
Period size: 79 Copynumber: 2.4 Consensus size: 80
126526946 TCGAATGATG
* * *
126526956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
*
126527020 TGTGCGAGTTACTAAT
65 TGTGCGAGTTACTAAA
* **
126527036 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
126527099 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
126527115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA
126527150 TATCGGCTAT
Statistics
Matches: 102, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 62 0.61
80 39 0.38
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:126529581 original size:24 final size:23
Alignment explanation
Indices: 126529532--126529624 Score: 123
Period size: 24 Copynumber: 3.9 Consensus size: 23
126529522 GTCAGAAGAA
*
126529532 GATTTAGGAGTTGATAAGGAGAG
1 GATTTAGGAGCTGATAAGGAGAG
*
126529555 GATTTAGGAGCTGGTAAGGGAGAG
1 GATTTAGGAGCTGATAA-GGAGAG
*
126529579 GATTTAGGAGCTGATAAAGGAGAA
1 GATTTAGGAGCTGAT-AAGGAGAG
*
126529603 GATTTAGGAGCTCATCAAGGAG
1 GATTTAGGAGCTGAT-AAGGAG
126529625 CAAGAGTTGG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
23 15 0.24
24 45 0.73
25 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.38, T:0.23
Consensus pattern (23 bp):
GATTTAGGAGCTGATAAGGAGAG
Found at i:126539615 original size:40 final size:39
Alignment explanation
Indices: 126539488--126539617 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
126539478 ATGCTGGAAA
* *
126539488 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
126539528 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
126539568 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
126539608 TTATATCCGG
1 TTATATCCGG
126539618 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:126549135 original size:24 final size:24
Alignment explanation
Indices: 126549103--126549163 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
126549093 AAAATCCAAT
* * *
126549103 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAATA-A
126549127 GCACTATGTGTGCGAGTGTAATAA
1 GCACTATGTGTGCGAGTGTAATAA
126549151 GCACTATGTGTGC
1 GCACTATGTGTGC
126549164 AAATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATAA
Found at i:126556666 original size:24 final size:24
Alignment explanation
Indices: 126556613--126556673 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
126556603 AAAATCCAAT
* * *
126556613 GCACTATGTGTGCGGTTTACTATG
1 GCACTATGTGTGCGGTGTAATATA
*
126556637 GTACTATGTGTGCGAGTGTAATA-A
1 GCACTATGTGTGCG-GTGTAATATA
126556661 GCACTATGTGTGC
1 GCACTATGTGTGC
126556674 AAATTCAGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGTGTAATATA
Found at i:126564180 original size:24 final size:24
Alignment explanation
Indices: 126564127--126564187 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
126564117 AAAATCCAAT
* * *
126564127 GCACTATGTGTGCGGTTTACTATG
1 GCACTATGTGTGCGGTGTAATATA
*
126564151 GTACTATGTGTGCGAGTGTAATA-A
1 GCACTATGTGTGCG-GTGTAATATA
126564175 GCACTATGTGTGC
1 GCACTATGTGTGC
126564188 AAATTCAGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGTGTAATATA
Found at i:126571690 original size:24 final size:24
Alignment explanation
Indices: 126571637--126571697 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
126571627 AAAATCCAAT
* * *
126571637 GCACTATGTGTGCGGTTTACTATG
1 GCACTATGTGTGCGGTGTAATATA
*
126571661 GTACTATGTGTGCGAGTGTAATA-A
1 GCACTATGTGTGCG-GTGTAATATA
126571685 GCACTATGTGTGC
1 GCACTATGTGTGC
126571698 AAATTCGTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGTGTAATATA
Done.