Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 412 of 770
Found at i:126579193 original size:24 final size:24
Alignment explanation
Indices: 126579140--126579200 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
126579130 AAAATCCAAT
* * *
126579140 GCACTATGTGTGCGGTTTACTATG
1 GCACTATGTGTGCGGTGTAATATA
*
126579164 GTACTATGTGTGCGAGTGTAATA-A
1 GCACTATGTGTGCG-GTGTAATATA
126579188 GCACTATGTGTGC
1 GCACTATGTGTGC
126579201 AAATTCAGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGTGTAATATA
Found at i:126581519 original size:27 final size:26
Alignment explanation
Indices: 126581478--126581646 Score: 153
Period size: 27 Copynumber: 6.3 Consensus size: 26
126581468 TGGGCCATAG
*
126581478 GGTAAAATGATCGAAATACCCTCGTAA
1 GGTAAAATGAACGAAATACCC-CGTAA
126581505 GGTAAAATGAACGAAATACCCCTGTAA
1 GGTAAAATGAACGAAATACCCC-GTAA
* * *
126581532 GGTAAAATGACCGAAATACCCCATAG
1 GGTAAAATGAACGAAATACCCCGTAA
* * *
126581558 GGTAAAATG-ACAAAAATACCCCCATAG
1 GGTAAAATGAAC-GAAATA-CCCCGTAA
* * *
126581585 GGTAAAATGACCGAAATATCCCGATAG
1 GGTAAAATGAACGAAATACCCCG-TAA
*
126581612 GGTAAAATG-ACTGTAATACCCCTGTAA
1 GGTAAAATGAAC-GAAATACCCC-GTAA
*
126581639 GATAAAAT
1 GGTAAAAT
126581647 TATTATTTTG
Statistics
Matches: 120, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.01
26 21 0.17
27 96 0.80
28 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (26 bp):
GGTAAAATGAACGAAATACCCCGTAA
Found at i:126581589 original size:53 final size:54
Alignment explanation
Indices: 126581472--126581622 Score: 198
Period size: 53 Copynumber: 2.8 Consensus size: 54
126581462 CCATTCTGGG
* * * *
126581472 CCATAGGGTAAAATGATCGAAATACCCTCGTAAGGTAAAATGA-ACGAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCC-CATAGGGTAAAATGACACAAAATACCC
** *
126581526 CTGTAAGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACA-AAAATACCC
1 CCATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACACAAAATACCC
*
126581579 CCATAGGGTAAAATGACCGAAATATCCCGATAGGGTAAAATGAC
1 CCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGAC
126581623 TGTAATACCC
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 42 0.50
54 42 0.50
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (54 bp):
CCATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACACAAAATACCC
Found at i:126581616 original size:80 final size:80
Alignment explanation
Indices: 126581472--126581633 Score: 211
Period size: 80 Copynumber: 2.0 Consensus size: 80
126581462 CCATTCTGGG
* * *
126581472 CCATAGGGTAAAATGATCGAAATACCCTCGTAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
1 CCATAGGGTAAAATGATCAAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
126581537 AATGACCGAAATACC
66 AATGACCGAAATACC
* * * *
126581552 CCATAGGGTAAAATGA-CAAAAATACCCCCATAGGGTAAAATGACCGAAATATCCC-GATAGGGT
1 CCATAGGGTAAAATGATC-AAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTG-TAAGGT
* *
126581615 AAAATGACTGTAATACC
64 AAAATGACCGAAATACC
126581632 CC
1 CC
126581634 TGTAAGATAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
79 2 0.03
80 69 0.97
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.19
Consensus pattern (80 bp):
CCATAGGGTAAAATGATCAAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
AATGACCGAAATACC
Found at i:126581645 original size:54 final size:52
Alignment explanation
Indices: 126581478--126581646 Score: 196
Period size: 54 Copynumber: 3.2 Consensus size: 52
126581468 TGGGCCATAG
* *
126581478 GGTAAAATGATCGAAATACCCTCG-TAAGGTAAAATGAACGAAATACCCCTGTAA
1 GGTAAAATGACCGAAATA-CC-CGATAGGGTAAAATG-ACGAAATACCCCTGTAA
* * ** *
126581532 GGTAAAATGACCGAAATACCCCATAGGGTAAAATGACAAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCGATAGGGTAAAATGAC-GAAATACCCCTGTAA
*
126581585 GGTAAAATGACCGAAATATCCCGATAGGGTAAAATGACTGTAATACCCCTGTAA
1 GGTAAAATGACCGAAATA-CCCGATAGGGTAAAATGAC-GAAATACCCCTGTAA
*
126581639 GATAAAAT
1 GGTAAAAT
126581647 TATTATTTTG
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
52 3 0.03
53 42 0.43
54 52 0.54
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (52 bp):
GGTAAAATGACCGAAATACCCGATAGGGTAAAATGACGAAATACCCCTGTAA
Found at i:126581698 original size:27 final size:27
Alignment explanation
Indices: 126581651--126581736 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
126581641 TAAAATTATT
**
126581651 ATTTTGCCCGTATG-GGTTAAAATGACA
1 ATTTTGCCATTATGAGG-TAAAATGACA
* * * * *
126581678 ATTTTTCCATTATTATGTAAAATCACG
1 ATTTTGCCATTATGAGGTAAAATGACA
* * *
126581705 GTTTTGCCCTTATGAGGTAAAATGACT
1 ATTTTGCCATTATGAGGTAAAATGACA
126581732 ATTTT
1 ATTTT
126581737 ACTCTTATGT
Statistics
Matches: 43, Mismatches: 15, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (27 bp):
ATTTTGCCATTATGAGGTAAAATGACA
Found at i:126582122 original size:18 final size:18
Alignment explanation
Indices: 126582095--126582130 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
126582085 AGGACTTGCA
* *
126582095 TACTGTTTACTGTTACTG
1 TACTGGTTACTGTAACTG
126582113 TACTGGTTACTGTAACTG
1 TACTGGTTACTGTAACTG
126582131 CCCTATTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (18 bp):
TACTGGTTACTGTAACTG
Found at i:126585165 original size:27 final size:27
Alignment explanation
Indices: 126584953--126585154 Score: 239
Period size: 27 Copynumber: 7.5 Consensus size: 27
126584943 TGGGCCAGAA
* *
126584953 GGTAGAATGACCGAAATAGCCCCC-TAG
1 GGTAAAATGACTGAAATA-CCCCCATAG
* *
126584980 GGTAAAATTACTGACATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
*
126585007 GGTAAATTGACTGAAATA-CCCCAGTAG
1 GGTAAAATGACTGAAATACCCCCA-TAG
*
126585034 GGTAAGATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
*
126585061 GGTAAAATGA-TCGAAATACCCCTATAG
1 GGTAAAATGACT-GAAATACCCCCATAG
126585088 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCATAG
* * * ***
126585115 GATGAAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACTGAAATACCCCCATAG
126585142 GGTAAAATGACTG
1 GGTAAAATGACTG
126585155 TGATACCCTT
Statistics
Matches: 150, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.07
27 133 0.89
28 6 0.04
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCCATAG
Found at i:126585172 original size:27 final size:27
Alignment explanation
Indices: 126585088--126585180 Score: 100
Period size: 27 Copynumber: 3.4 Consensus size: 27
126585078 ACCCCTATAG
* *
126585088 GGTAAAATGACTGAAATACCC--CCATA
1 GGTAAAATGACTGTAATACCCTTGCA-A
* * *
126585114 GGATGAAATGACTGTAATACCCTTGTAG
1 GG-TAAAATGACTGTAATACCCTTGCAA
*
126585142 GGTAAAATGACTGTGATACCCTTGCAA
1 GGTAAAATGACTGTAATACCCTTGCAA
126585169 GGTAAAATGACT
1 GGTAAAATGACT
126585181 ATTTTGCCCT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.04
27 50 0.91
28 2 0.04
29 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCTTGCAA
Found at i:126585173 original size:81 final size:81
Alignment explanation
Indices: 126584959--126585180 Score: 202
Period size: 81 Copynumber: 2.7 Consensus size: 81
126584949 AGAAGGTAGA
* * * * * * *
126584959 ATGACCGAAATAGCCCCC-TAGGGTAAAATTA-CTGACATACCCCCATAGGGTAAATTGACTGAA
1 ATGACTGAAATA-CCCCCATAGGGTAAAATGATC-GAAATACCCCTACAAGGTAAAATGACTGAA
*
126585022 ATACCCCAGTAGGGTAAG
64 ATACCCCAGTAGGATAAG
* *
126585040 ATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGTAAAATGACTGAAAT
1 ATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTACAAGGTAAAATGACTGAAAT
126585105 ACCCCCA-TAGGATGAA-
66 A-CCCCAGTAGGAT-AAG
* *** ** * *
126585121 ATGACTGTAATACCCTTGTAGGGTAAAATGA-CTGTGATACCCTTGCAAGGTAAAATGACT
1 ATGACTGAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCTACAAGGTAAAATGACT
126585181 ATTTTGCCCT
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
80 6 0.05
81 106 0.88
82 8 0.07
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (81 bp):
ATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTACAAGGTAAAATGACTGAAAT
ACCCCAGTAGGATAAG
Found at i:126585177 original size:54 final size:53
Alignment explanation
Indices: 126584952--126585180 Score: 239
Period size: 54 Copynumber: 4.2 Consensus size: 53
126584942 TTGGGCCAGA
* * * * *
126584952 AGGTAGAATGACCGAAATAGCCCC-CTAGGGTAAAATTACTGACATACCCCCAT
1 AGGTAAAATGACTGAAATA-CCCCTGTAGGGTAAAATGACTGAAATACCCCCAT
* * *
126585005 AGGGTAAATTGACTGAAATACCCCAGTAGGGTAAGATGACTGAAATACCCCCAT
1 A-GGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGACTGAAATACCCCCAT
*
126585059 AGGGTAAAATGA-TCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCAT
1 A-GGTAAAATGACT-GAAATACCCCTGTAGGGTAAAATGACTGAAATACCCCCAT
* * * ** *
126585113 AGGATGAAATGACTGTAATACCCTTGTAGGGTAAAATGACTGTGATACCCTTGCA-
1 AGG-TAAAATGACTGAAATACCCCTGTAGGGTAAAATGACTGAAATACCC--CCAT
126585168 AGGTAAAATGACT
1 AGGTAAAATGACT
126585181 ATTTTGCCCT
Statistics
Matches: 150, Mismatches: 19, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
53 8 0.05
54 136 0.91
55 4 0.03
56 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (53 bp):
AGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGACTGAAATACCCCCAT
Found at i:126585190 original size:27 final size:27
Alignment explanation
Indices: 126585167--126585301 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 27
126585157 ATACCCTTGC
126585167 AAGGTAAAATGACTATTTTGCCCTTAT
1 AAGGTAAAATGACTATTTTGCCCTTAT
* * *
126585194 ATGTTAAAATGACGATTTTGCCCTTAT
1 AAGGTAAAATGACTATTTTGCCCTTAT
** *
126585221 GTGGTAAAATGACGATTTTGCCCTTAT
1 AAGGTAAAATGACTATTTTGCCCTTAT
*
126585248 GAGGT-AAATGACTATTTTGCCCTTAT
1 AAGGTAAAATGACTATTTTGCCCTTAT
** ** *
126585274 GTGGTAGGATGACTATTTTGCCCCTAT
1 AAGGTAAAATGACTATTTTGCCCTTAT
126585301 A
1 A
126585302 TGATGCATGT
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.25
27 71 0.75
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
AAGGTAAAATGACTATTTTGCCCTTAT
Found at i:126585277 original size:53 final size:54
Alignment explanation
Indices: 126585169--126585303 Score: 193
Period size: 53 Copynumber: 2.5 Consensus size: 54
126585159 ACCCTTGCAA
*
126585169 GGTAAAATGACTATTTTGCCCTTATATGTTAAAATGACGATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATATGGTAAAATGACGATTTTGCCCTTATGT
* *
126585223 GGTAAAATGACGATTTTGCCCTTATGA-GGT-AAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTAT-ATGGTAAAATGACGATTTTGCCCTTATGT
** *
126585276 GGTAGGATGACTATTTTGCCCCTATATG
1 GGTAAAATGACTATTTTGCCCTTATATG
126585304 ATGCATGTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
52 1 0.01
53 44 0.61
54 26 0.36
55 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTAAAATGACTATTTTGCCCTTATATGGTAAAATGACGATTTTGCCCTTATGT
Found at i:126594864 original size:29 final size:29
Alignment explanation
Indices: 126594851--126594933 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
126594841 GTGCCGTAAT
126594851 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
126594880 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
126594909 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
126594934 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:126594865 original size:58 final size:58
Alignment explanation
Indices: 126594803--126594933 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 58
126594793 ATTTAAGCCC
* * * *
126594803 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTA-ATTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATA-TTTCCAGCAT
* * **
126594861 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
126594919 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
126594934 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 61 0.97
59 2 0.03
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:126598777 original size:40 final size:39
Alignment explanation
Indices: 126598732--126598939 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
126598722 CGGAATACAA
*
126598732 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
126598772 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
126598812 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
126598852 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
126598892 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
126598932 CCGGATAT
1 CCGGATAT
126598940 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:126598872 original size:80 final size:80
Alignment explanation
Indices: 126598732--126598938 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
126598722 CGGAATACAA
* * *
126598732 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
126598796 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
126598812 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
126598876 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
126598892 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
126598939 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:126606802 original size:40 final size:40
Alignment explanation
Indices: 126606757--126606882 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
126606747 CGGAATACAA
* *
126606757 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
126606797 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
126606837 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
126606877 CCGGAT
1 CCGGAT
126606883 GTGGTCACTA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:126606897 original size:80 final size:80
Alignment explanation
Indices: 126606757--126606925 Score: 209
Period size: 80 Copynumber: 2.1 Consensus size: 80
126606747 CGGAATACAA
* *
126606757 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
126606821 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAGC
* * * **
126606837 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
* *
126606901 GCCTTC-GGTCTTAAC
65 GCCTTCGGGTATTAGC
*
126606916 CCGGGTATAA
1 CCGGATATAA
126606926 TTACTAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 18 0.24
80 56 0.74
81 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAGC
Found at i:126618412 original size:29 final size:30
Alignment explanation
Indices: 126618379--126618438 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
126618369 TCTTTAATAC
126618379 AAACTTTGGCA-AATTACA-TTTTTGCCCCT
1 AAACTTTGGCATAATTACACTTTTT-CCCCT
*
126618408 AAACTTTTGCATAATTACACTTTTTCCCCT
1 AAACTTTGGCATAATTACACTTTTTCCCCT
126618438 A
1 A
126618439 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 10 0.36
30 13 0.46
31 5 0.18
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTGGCATAATTACACTTTTTCCCCT
Found at i:126620905 original size:67 final size:65
Alignment explanation
Indices: 126620823--126620976 Score: 193
Period size: 64 Copynumber: 2.3 Consensus size: 65
126620813 CTACCCAGTT
* * *
126620823 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACA
126620888 T-A
63 TCA
* * *
126620890 TATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCA
126620955 TAATGTCTCGTAGCTCTCTTGT
1 T-A--TCTCGTAGCTCTCTTGT
126620977 ACACATGATG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
64 29 0.38
65 2 0.03
66 1 0.01
67 28 0.37
68 16 0.21
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (65 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCA
Found at i:126637024 original size:120 final size:119
Alignment explanation
Indices: 126636748--126637042 Score: 402
Period size: 120 Copynumber: 2.5 Consensus size: 119
126636738 GATGATAACG
* *
126636748 GGGCTAAGTCCCG-AGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGCATTTGT
**
126636811 GCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
64 GCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACTACTATATCC
** *
126636867 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
126636932 CGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAACTACTATATCC
65 CGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AACTACTATATCC
* * * *
126636987 GGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATAT-CTGGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAGG
126637043 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
119 33 0.21
120 124 0.78
121 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (119 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACTACTATATCC
Found at i:126637025 original size:40 final size:40
Alignment explanation
Indices: 126636748--126637009 Score: 422
Period size: 40 Copynumber: 6.6 Consensus size: 40
126636738 GATGATAACG
* *
126636748 GGGCTAAGTCCCG-AGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
126636787 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
126636827 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
126636867 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
126636907 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
126636947 GGGCTAAGTCCCGAAGGCATTTGTGTGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
126636987 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
126637010 AGCAAGTAGT
Statistics
Matches: 212, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 13 0.06
40 198 0.93
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:126645911 original size:28 final size:27
Alignment explanation
Indices: 126645848--126645917 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
126645838 ATAGTGAGTC
126645848 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
126645875 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
126645903 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
126645918 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:126653933 original size:28 final size:27
Alignment explanation
Indices: 126653870--126653939 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
126653860 ATAGTGAGTC
126653870 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
126653897 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
126653925 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
126653940 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:126656130 original size:40 final size:40
Alignment explanation
Indices: 126656075--126656367 Score: 364
Period size: 40 Copynumber: 7.4 Consensus size: 40
126656065 TGATAATGGT
* *
126656075 GCTAAGT-CCGAAGGCATTTGTGCTAGTGACTA-ATTCCAG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCCGG
*
126656114 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCCGG
* *
126656154 GCTAAGTCCTGAAGGCAGTTGTGCTAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGG
* * *
126656194 GCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATATCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGG
* *
126656234 GCTAAGTCCTGAAGGCATTTGTGCAAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGG
**
126656274 GCTAAGTCCCGAAGGCATTTGTG-TGAACTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATATCCGG
* *
126656314 GCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATCCGG
* *
126656353 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
126656368 TACTTGGTTT
Statistics
Matches: 225, Mismatches: 24, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
39 23 0.10
40 201 0.89
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGG
Found at i:126658953 original size:29 final size:29
Alignment explanation
Indices: 126658907--126658967 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
126658897 TACCGGTGAT
126658907 CACATCGAGCGCTAAAGCTTCCTCTCGAG
1 CACATCGAGCGCTAAAGCTTCCTCTCGAG
*
126658936 CACATCGAGCGCTGAAGCTTCCTCTCGAG
1 CACATCGAGCGCTAAAGCTTCCTCTCGAG
126658965 CAC
1 CAC
126658968 GGACCACGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.36, G:0.21, T:0.20
Consensus pattern (29 bp):
CACATCGAGCGCTAAAGCTTCCTCTCGAG
Found at i:126667646 original size:40 final size:40
Alignment explanation
Indices: 126667591--126667833 Score: 322
Period size: 40 Copynumber: 6.2 Consensus size: 40
126667581 AACATTGGAA
126667591 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
126667631 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
126667671 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
126667711 ATATATCCGGGCTAAGACCCGAAGGC---CGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
126667748 ----ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
126667783 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
126667824 CTATATCCGG
1 ATATATCCGG
126667834 TTAAATCCCG
Statistics
Matches: 180, Mismatches: 14, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
33 22 0.12
35 1 0.01
36 6 0.03
37 11 0.06
40 140 0.78
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:126672182 original size:18 final size:18
Alignment explanation
Indices: 126672159--126672196 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
126672149 TAATGCATGA
126672159 AAACTAGACTCAAAAAGG
1 AAACTAGACTCAAAAAGG
126672177 AAACTAGACTCAAAAAGG
1 AAACTAGACTCAAAAAGG
126672195 AA
1 AA
126672197 TCTATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (18 bp):
AAACTAGACTCAAAAAGG
Found at i:126673167 original size:40 final size:40
Alignment explanation
Indices: 126673122--126673305 Score: 271
Period size: 40 Copynumber: 4.6 Consensus size: 40
126673112 CTCGCACAAG
* *
126673122 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
126673162 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
126673202 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
126673242 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
126673282 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
126673306 CATTCGAATA
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:126675503 original size:20 final size:20
Alignment explanation
Indices: 126675475--126675521 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
126675465 TACCAACTTG
*
126675475 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
126675495 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
126675515 CAACATA
1 CAACATA
126675522 AACATTGTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.30, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:126675715 original size:42 final size:41
Alignment explanation
Indices: 126675604--126675715 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 41
126675594 TACCATACCA
* *
126675604 ATGCCATATCCCAGATAGTGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATAG-GTCTTACACGAGATCTCATATCG
* * *
126675646 ATGCCAATAGCCCAGTTACAGTCTTACACGA-AGTCTCATATCG
1 ATGCC-ATATCCCAGATA-GGTCTTACACGAGA-TCTCATATCG
126675689 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATA-GGTCTTACA
126675716 AGTAACTCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATAGGTCTTACACGAGATCTCATATCG
Found at i:126685340 original size:37 final size:37
Alignment explanation
Indices: 126685286--126685389 Score: 181
Period size: 37 Copynumber: 2.8 Consensus size: 37
126685276 GCTCAGACGA
**
126685286 AATCTCCACACAAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
126685323 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
126685360 AATCTCCACACGTAGTCATCGGGTCTTACC
1 AATCTCCACACGTAGTCATCGGGTCTTACC
126685390 TGGAATATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:126685509 original size:48 final size:48
Alignment explanation
Indices: 126685438--126685917 Score: 753
Period size: 48 Copynumber: 10.0 Consensus size: 48
126685428 TGTTACAACC
* * * * *
126685438 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
126685486 TTCACATTCGCCATTCGGCTTTACGACCTATACATATCTCATATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
126685534 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
126685582 TTCACATTCACCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
126685630 GTCACATTCACCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
126685678 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* ** *
126685726 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCGTATGTAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
126685774 TTCACATTCGCCATTCGGCTTTACCACATATACATTTCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
126685822 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
126685870 TTCACATTCGCCATTCGGATTTACCACATATACATATCACACATATAT
1 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
126685918 ATATTTATCT
Statistics
Matches: 398, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 398 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:126691980 original size:27 final size:28
Alignment explanation
Indices: 126691946--126692014 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
126691936 TACTCGATCA
* *
126691946 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
126691973 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
126692001 CGCACACTTAGTGC
1 CGCACACTTAGTGC
126692015 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:126693385 original size:18 final size:18
Alignment explanation
Indices: 126693353--126693390 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
126693343 TCCACACCCA
126693353 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
126693373 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
126693390 T
1 T
126693391 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:126699979 original size:27 final size:28
Alignment explanation
Indices: 126699945--126700013 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
126699935 TACTCGATCA
* *
126699945 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
126699972 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
126700000 CGCACACTTAGTGC
1 CGCACACTTAGTGC
126700014 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:126701385 original size:17 final size:19
Alignment explanation
Indices: 126701350--126701386 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
126701340 TCCACACCCA
126701350 TTTTTTTCATCATTATCTTT
1 TTTTTTTCA-CATTATCTTT
126701370 TTTTTTTC-CATT-TCTTT
1 TTTTTTTCACATTATCTTT
126701387 ATTCTCCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.29
18 4 0.24
20 8 0.47
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTTTTCACATTATCTTT
Found at i:126703299 original size:30 final size:30
Alignment explanation
Indices: 126703263--126703319 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
126703253 GATGAAAAAG
126703263 GAAAGATATGTGTTGGGTTAATATGTTAAC
1 GAAAGATATGTGTTGGGTTAATATGTTAAC
*
126703293 GAAAGATATTTGTTGGGTTAATATGTT
1 GAAAGATATGTGTTGGGTTAATATGTT
126703320 TTGTATTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.02, G:0.26, T:0.40
Consensus pattern (30 bp):
GAAAGATATGTGTTGGGTTAATATGTTAAC
Found at i:126703932 original size:43 final size:43
Alignment explanation
Indices: 126703880--126703995 Score: 180
Period size: 43 Copynumber: 2.7 Consensus size: 43
126703870 TGTGATTACA
*
126703880 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGA-GATTGCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATT-ATGATTGCG
*
126703923 TGTGAGACCATGTCTGGGACATTGGCATCGTATTATGATTGCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTGCG
* *
126703966 TGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG
126703996 ATAGTATCTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
42 1 0.01
43 66 0.99
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTGCG
Found at i:126707438 original size:27 final size:28
Alignment explanation
Indices: 126707381--126707450 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
126707371 AAACTTGTAC
*
126707381 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
126707409 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
126707436 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
126707451 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:126707461 original size:27 final size:27
Alignment explanation
Indices: 126707381--126707462 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
126707371 AAACTTGTAC
* * *
126707381 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
126707409 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
126707436 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
126707463 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:126715369 original size:27 final size:28
Alignment explanation
Indices: 126715312--126715381 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
126715302 AAACTTGTAC
*
126715312 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
126715340 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
126715367 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
126715382 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:126715392 original size:27 final size:27
Alignment explanation
Indices: 126715312--126715393 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
126715302 AAACTTGTAC
* * *
126715312 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
126715340 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
126715367 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
126715394 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:126718852 original size:42 final size:43
Alignment explanation
Indices: 126718787--126718890 Score: 122
Period size: 42 Copynumber: 2.4 Consensus size: 43
126718777 AATCGACTTA
*
126718787 TGATTCACATGTAAGACCATGTCTGGGACA-TCGGCATC-ATATT
1 TGATT-ACATGTAAGACCATGTCTAGGACAGT-GGCATCGATATT
* * * *
126718830 TGATTTCGTGTAAGACCCTGTCTAGGATAGTGGCATCGATATT
1 TGATTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATT
*
126718873 TGGTTACATGTAAGACCA
1 TGATTACATGTAAGACCA
126718891 CATTTGGGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATT
Found at i:126718907 original size:43 final size:43
Alignment explanation
Indices: 126718752--126718908 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
126718742 TGTGATTTCG
* * *
126718752 TGTAAGACCACATCTGAGACGTTGGAATCGACT-TATGATTCACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGATT-ACA
** * * * *
126718796 TGTAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTCG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACA
* * * *
126718838 TGTAAGACC-CTGTCTAGGATAG-TGGCATCGATATTTGGTTACA
1 TGTAAGACCAC-ATCTGGGA-CGTTGGCATCGATATTTGATTACA
*
126718881 TGTAAGACCACATTTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
126718909 TGTACAAGCT
Statistics
Matches: 86, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
42 25 0.29
43 37 0.43
44 24 0.28
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:126724676 original size:40 final size:40
Alignment explanation
Indices: 126724589--126724676 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
126724579 ACCTTCGAAT
126724589 TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAACGACTCGCTCAAATGCCTTCGGGAC
* * *
126724628 -GAAGCCCGGTTATAACGACTCG-TACGAATGCCTTCGGGAC
1 TTAA-CCCGGATATAACGACTCGCT-CAAATGCCTTCGGGAC
126724668 TTAACCCGG
1 TTAACCCGG
126724677 GTTTAGTAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
38 2 0.05
39 1 0.02
40 36 0.88
41 2 0.05
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
TTAACCCGGATATAACGACTCGCTCAAATGCCTTCGGGAC
Found at i:126724727 original size:78 final size:80
Alignment explanation
Indices: 126724645--126724795 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 80
126724635 GGTTATAACG
* * * * *
126724645 ACTCGTACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
126724707 TAGCCCGGATTTTATA
65 TAGCCCGGATTTTATA
* ** *
126724723 ACTCGCACGAATGGCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
126724788 AGCCCGGA
66 AGCCCGGA
126724796 CATCATTCGA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
77 3 0.05
78 32 0.52
79 15 0.25
80 11 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTTATA
Found at i:126724741 original size:39 final size:40
Alignment explanation
Indices: 126724645--126724742 Score: 121
Period size: 39 Copynumber: 2.5 Consensus size: 40
126724635 GGTTATAACG
*
126724645 ACTCGTACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * *
126724685 ACTTGCAC-AATGCCTTCGGG-CTTAGCCCGGATTTTA-TA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-GTTTAGTA
*
126724723 ACTCGCACGAATGGCTTCGG
1 ACTCGCACGAATGCCTTCGG
126724743 ATCCTAGTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
38 18 0.36
39 26 0.52
40 6 0.12
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:126724795 original size:40 final size:39
Alignment explanation
Indices: 126724654--126724795 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 39
126724644 GACTCGTACG
* *
126724654 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCAC
*
126724693 AATGCCTTCGGG-CTTAGCCCGGATTTTA-TAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGA-TTTAGTAACTTGCAC
* * * * *
126724731 GAATGGCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCAC
*
126724772 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
126724796 CATCATTCGA
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
38 20 0.24
39 27 0.33
40 29 0.35
41 7 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCAC
Found at i:126732653 original size:46 final size:46
Alignment explanation
Indices: 126732603--126732778 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
126732593 TGGTTGAGCA
126732603 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
126732649 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
126732694 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
126732742 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
126732779 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:126732759 original size:93 final size:93
Alignment explanation
Indices: 126732600--126732771 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
126732590 GGATGGTTGA
* *
126732600 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
126732665 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
126732693 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
126732758 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
126732772 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:126739336 original size:51 final size:49
Alignment explanation
Indices: 126739157--126739352 Score: 212
Period size: 50 Copynumber: 3.9 Consensus size: 49
126739147 TAAACAAGGC
* * * * *
126739157 TATCTGGTACGCATAGTAGACTGTACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
126739206 TATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* ** * * *
126739256 CATCTAATACACGTAGTAGCCTGCGCTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* *
126739307 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
126739353 TCACAATAGA
Statistics
Matches: 119, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 38 0.32
50 43 0.36
51 38 0.32
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:126739629 original size:27 final size:27
Alignment explanation
Indices: 126739599--126739652 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
126739589 TCATACAGCC
* *
126739599 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
126739626 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
126739653 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:126744331 original size:40 final size:40
Alignment explanation
Indices: 126744221--126744332 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
126744211 TGAAATTTAT
* * * * *
126744221 ATCCGGGTTAAGACCCGAAGGAAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTAA
* * *
126744261 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTAA
126744301 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
126744333 ATCGTGATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTAA
Found at i:126744345 original size:40 final size:39
Alignment explanation
Indices: 126744177--126744347 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
126744167 AGAAATTGAA
* *
126744177 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * * *
126744217 TTATATCCGGGTTAAGACCCGAAGGAAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
126744257 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
126744297 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
126744337 TGATATCCGGG
1 TGATATCCGGG
126744348 TAAAGTCCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 93 0.89
41 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:126746826 original size:17 final size:18
Alignment explanation
Indices: 126746804--126746837 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
126746794 CACATTGAAG
126746804 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
126746821 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
126746838 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:126747929 original size:28 final size:27
Alignment explanation
Indices: 126747897--126748007 Score: 100
Period size: 28 Copynumber: 4.0 Consensus size: 27
126747887 ACATACCTGT
*
126747897 ATATGGCCCACTAGGCCCAATCTTC-TTC
1 ATATGGCCCA-TAGGCCCAATC-ACATTC
*
126747925 ATATGGCCCATCAGGCCCAATCACATTT
1 ATATGGCCCAT-AGGCCCAATCACATTC
* *
126747953 ATGTGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCA-TAGGCCC-AATCACATTC
* *
126747982 ATA-CGACCATTAGGCCCAATCACATT
1 ATATGGCCCA-TAGGCCCAATCACATT
126748008 TACCGTCATG
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.15
28 49 0.67
29 13 0.18
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (27 bp):
ATATGGCCCATAGGCCCAATCACATTC
Found at i:126748258 original size:16 final size:16
Alignment explanation
Indices: 126748237--126748273 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
126748227 AAACTTTTGA
126748237 CTTTTCAGCATTTCAG
1 CTTTTCAGCATTTCAG
* *
126748253 CTTTTCGGCATTTCGG
1 CTTTTCAGCATTTCAG
126748269 CTTTT
1 CTTTT
126748274 GCCTATCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.24, G:0.16, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCAG
Found at i:126754048 original size:27 final size:27
Alignment explanation
Indices: 126754001--126754053 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
126753991 CTTCTAATTG
126754001 ATAAAATGACTATTATTCCCCTATGTA
1 ATAAAATGACTATTATTCCCCTATGTA
*
126754028 ATAAAATGACTGTT-TTGCCCCTATGT
1 ATAAAATGACTATTATT-CCCCTATGT
126754054 GATGTATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (27 bp):
ATAAAATGACTATTATTCCCCTATGTA
Found at i:126756033 original size:24 final size:24
Alignment explanation
Indices: 126756001--126756063 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
126755991 AATCTCAAAT
126756001 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
126756025 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
126756049 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
126756064 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:126763881 original size:24 final size:24
Alignment explanation
Indices: 126763849--126763911 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
126763839 AATATCAAAT
*
126763849 GCACTATGTGTGTGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
126763873 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
126763897 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
126763912 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:126769316 original size:47 final size:47
Alignment explanation
Indices: 126769196--126769319 Score: 185
Period size: 47 Copynumber: 2.6 Consensus size: 47
126769186 CCCTTCGGGA
* * * *
126769196 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTAGGC
* *
126769243 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTAGGC
*
126769290 CTTATCACATATATACCCTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
126769320 TGTGACAACC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTAGGC
Found at i:126770700 original size:71 final size:71
Alignment explanation
Indices: 126770612--126770775 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
126770602 GAGATGTATC
126770612 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
126770677 AGGACA
66 AGGACA
*
126770683 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
126770748 CGGACA
66 AGGACA
126770754 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
126770776 AGACAAATCA
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:126772161 original size:49 final size:50
Alignment explanation
Indices: 126772084--126772192 Score: 175
Period size: 49 Copynumber: 2.2 Consensus size: 50
126772074 AAGGGGTGTT
* *
126772084 ACATTCATCACATCGGCCATTAGCCCTTATCAC-ATATGTATACGCTTTC
1 ACATTCATCACATCGGCCATTAGCCCTTATCACAATATATATACACTTTC
*
126772133 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGCCCTTATCACA-ATATATATACACTTTC
126772184 ACATTCATC
1 ACATTCATC
126772193 GCGTAGAATC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
49 32 0.58
51 23 0.42
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (50 bp):
ACATTCATCACATCGGCCATTAGCCCTTATCACAATATATATACACTTTC
Found at i:126780146 original size:40 final size:40
Alignment explanation
Indices: 126780101--126780267 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
126780091 CGGAATATAA
126780101 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
126780141 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
126780181 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
126780221 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
126780260 CCGGATAT
1 CCGGATAT
126780268 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:126780251 original size:80 final size:79
Alignment explanation
Indices: 126780101--126780267 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
126780091 CGGAATATAA
* *
126780101 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
126780166 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
126780181 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
126780243 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
126780260 CCGGATAT
1 CCGGATAT
126780268 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:126781115 original size:17 final size:19
Alignment explanation
Indices: 126781092--126781137 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
126781082 AAGAAGCATG
126781092 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
126781110 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
126781128 AATCATGCTC
1 AATCATGCTC
126781138 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:126788147 original size:40 final size:40
Alignment explanation
Indices: 126788102--126788267 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
126788092 CGGAATATAA
126788102 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
126788142 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
126788182 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
126788221 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
126788260 CCGGATAT
1 CCGGATAT
126788268 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:126788224 original size:39 final size:38
Alignment explanation
Indices: 126788118--126788229 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
126788108 ATAATCACGT
* * *
126788118 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
126788158 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
126788197 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
126788230 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:126788251 original size:79 final size:78
Alignment explanation
Indices: 126788118--126788267 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
126788108 ATAATCACGT
*
126788118 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
126788183 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
126788197 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
126788260 CCGGATAT
64 CCGGATAT
126788268 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:126790966 original size:40 final size:40
Alignment explanation
Indices: 126790858--126791067 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
126790848 CGGGATTTAA
* * * * *
126790858 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
126790898 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126790938 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126790978 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126791018 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126791058 CCGGATATAT
1 CCGGATATAT
126791068 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:126799102 original size:40 final size:40
Alignment explanation
Indices: 126798994--126799203 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
126798984 CGGGATTTAA
* * * * *
126798994 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
126799034 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126799074 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126799114 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126799154 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
126799194 CCGGATATAT
1 CCGGATATAT
126799204 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:126807603 original size:48 final size:49
Alignment explanation
Indices: 126807528--126807658 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 49
126807518 TACATCAAAC
* * *
126807528 TCGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATTGAG-G
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTG
* *
126807577 -CTGATGCCGTGTCCCA-ACAGGTCTTACACT-AGCTCTCATCTATCGGTG
1 TC-GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGTG
*
126807625 TCGATGCCATGTCCCAGATAGGTCTTACACTGAC
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGAC
126807659 ACACAACAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
47 2 0.03
48 39 0.57
49 27 0.39
50 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (49 bp):
TCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTG
Found at i:126807797 original size:25 final size:25
Alignment explanation
Indices: 126807763--126807810 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
126807753 CGTCTCAATA
126807763 CCGATGCATGTCCCAGACATGTCTT
1 CCGATGCATGTCCCAGACATGTCTT
*
126807788 CCGATGCATGTCCCATACATGTC
1 CCGATGCATGTCCCAGACATGTC
126807811 ATACACTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (25 bp):
CCGATGCATGTCCCAGACATGTCTT
Found at i:126807864 original size:48 final size:48
Alignment explanation
Indices: 126807788--126807916 Score: 213
Period size: 48 Copynumber: 2.7 Consensus size: 48
126807778 GACATGTCTT
* * *
126807788 CCGATGCATGTCCCATACATGTCATACACTGGCTTGTATCTATCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTATCGAGG
* *
126807836 TCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTTTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTATCGAGG
126807884 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
126807917 ACACATATCA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTATCGAGG
Found at i:126815624 original size:40 final size:40
Alignment explanation
Indices: 126815569--126815746 Score: 151
Period size: 40 Copynumber: 4.5 Consensus size: 40
126815559 TGAATGATAC
* *
126815569 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
*
126815609 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* ** * * *** *
126815649 CCGGGTTAATTCCCGAAGGCATTTGTGCGACTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * * * ** *
126815689 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
126815729 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGACCCGAAG
126815747 ACAATCGAGC
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 117 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:126815771 original size:80 final size:80
Alignment explanation
Indices: 126815604--126815786 Score: 181
Period size: 80 Copynumber: 2.3 Consensus size: 80
126815594 TGCTAGTGAT
* * * ** * * *
126815604 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAATTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAATTCCCGAAGAC
* * * *
126815669 ATTTGTGCGACTTAC
66 AATCGAGCGACTCAC
* *
126815684 CAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCT-ATGTCCCGAAGA
1 TATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAT-TCCCGAAGA
* *
126815748 CAATCGAGCGAGTCGC
65 CAATCGAGCGACTCAC
* *
126815764 TATATCC-GGTTAAATTCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
126815787 TACGTGATTC
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
79 16 0.20
80 66 0.80
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAATTCCCGAAGAC
AATCGAGCGACTCAC
Found at i:126823870 original size:40 final size:40
Alignment explanation
Indices: 126823706--126823883 Score: 153
Period size: 40 Copynumber: 4.5 Consensus size: 40
126823696 TGAATGATAC
* * * * * * *
126823706 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTAGTATAA
* * *
126823746 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTT-GTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTAG-TATAA
* * * **
126823786 CCGGGTTAATTCCCGAAGGCATTTGTGCGACTTACCA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTAGTATAA
* * *
126823825 TCCGGGTTAAGTCCCAAAGGCATTTGTGCAAATTAGTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTAGTATAA
*
126823866 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
126823884 ACAATCGAGT
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
39 1 0.01
40 110 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTAGTATAA
Found at i:126827580 original size:29 final size:29
Alignment explanation
Indices: 126827548--126827620 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
126827538 CTTCGAGCTC
*
126827548 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
126827577 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
126827606 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
126827621 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:126832762 original size:68 final size:64
Alignment explanation
Indices: 126832548--126832798 Score: 201
Period size: 68 Copynumber: 3.8 Consensus size: 64
126832538 CATAATTTTG
* * *
126832548 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACAC-TAGTACCATCCATGTGACCTAGCTACA-TATATTCTCG
126832609 TA
63 TA
* * * * *
126832611 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCA-CACATGCGACCTAGCTACATATA-TCC
1 GCTCTCTTGTCTACATGGTG---TACA-CTAGTACCATC-CATGTGACCTAGCTACATATATTCT
126832674 CGTA
61 CGTA
* *
126832678 GCTCTCTTATCTACATGGTGTACACATAGTATCATCCATGTGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACAC-TAGTACCATCCATGTGACCTAGCTACAT-AT-AT-TCTC
126832743 GTA
62 GTA
* * * *
126832746 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACA
1 GCTCTCTTGT-CTACATGGTGTACACT-AGTACCATCCATGTGACCTAGCTACA
126832799 ACCATCTGTA
Statistics
Matches: 152, Mismatches: 20, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 4 0.03
66 21 0.14
67 30 0.20
68 51 0.34
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTAGTACCATCCATGTGACCTAGCTACATATATTCTCGTA
Found at i:126835151 original size:20 final size:19
Alignment explanation
Indices: 126835126--126835170 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
126835116 CGGAAAATGA
126835126 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
* *
126835146 TTTCTGGAACTGATTTACT
1 TTTCTGAAAATGATTTACT
126835165 TTTCTG
1 TTTCTG
126835171 GTGTTTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.49
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:126835232 original size:32 final size:33
Alignment explanation
Indices: 126835164--126835232 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
126835154 ACTGATTTAC
* *
126835164 TTTTCTGGTGTTTGGATGAATTTGTGTAAAATA
1 TTTTCTGGTGTTTGGAAGAATTTCTGTAAAATA
*
126835197 TTTTCTGTTGTTTGGAAG-ATTTCCTG-AAAATA
1 TTTTCTGGTGTTTGGAAGAATTT-CTGTAAAATA
126835229 TTTT
1 TTTT
126835233 TTTAGAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.23, C:0.06, G:0.20, T:0.51
Consensus pattern (33 bp):
TTTTCTGGTGTTTGGAAGAATTTCTGTAAAATA
Found at i:126835269 original size:18 final size:18
Alignment explanation
Indices: 126835248--126835283 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
126835238 AAAAACTATT
126835248 TTTACATATATTAATAAA
1 TTTACATATATTAATAAA
*
126835266 TTTATATATATTAATAAA
1 TTTACATATATTAATAAA
126835284 ATTATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTACATATATTAATAAA
Found at i:126835274 original size:16 final size:18
Alignment explanation
Indices: 126835253--126835295 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
126835243 CTATTTTTAC
*
126835253 ATATATTAATAAATTTAT
1 ATATATTAATAAATATAT
126835271 ATATATTAATAAA-AT-T
1 ATATATTAATAAATATAT
*
126835287 ATATTTTAA
1 ATATATTAA
126835296 ATTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 1 0.04
18 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATATTAATAAATATAT
Found at i:126835288 original size:18 final size:18
Alignment explanation
Indices: 126835253--126835290 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
126835243 CTATTTTTAC
*
126835253 ATATATTAATAAATTTAT
1 ATATATTAATAAAATTAT
126835271 ATATATTAATAAAATTAT
1 ATATATTAATAAAATTAT
126835289 AT
1 AT
126835291 TTTAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATATTAATAAAATTAT
Found at i:126842824 original size:40 final size:40
Alignment explanation
Indices: 126842750--126842971 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
126842740 AACCCAAGTA
* *
126842750 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
126842789 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
126842829 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
126842869 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
126842909 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
126842949 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
126842972 CATTCGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 156 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:126844638 original size:29 final size:29
Alignment explanation
Indices: 126844605--126844678 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
126844595 CCTTCGAGCT
126844605 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
126844634 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
126844663 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
126844679 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:126844639 original size:58 final size:58
Alignment explanation
Indices: 126844546--126844678 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
126844536 ATACTCGATT
* * * * *
126844546 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
126844604 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
126844662 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
126844679 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:126852519 original size:29 final size:29
Alignment explanation
Indices: 126852486--126852559 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
126852476 CCTTCGAGCT
126852486 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
126852515 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
126852544 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
126852560 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:126852520 original size:58 final size:58
Alignment explanation
Indices: 126852427--126852559 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
126852417 ATACTCGATT
* * * * *
126852427 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
126852485 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
126852543 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
126852560 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:126857251 original size:39 final size:40
Alignment explanation
Indices: 126857195--126857388 Score: 267
Period size: 39 Copynumber: 5.0 Consensus size: 40
126857185 TCGAATGATG
* * *
126857195 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACT-AA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
126857234 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
126857274 TCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
126857313 TCCGGACTAAGATCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
126857352 TCCGG-GTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
126857389 TAACCGGGCC
Statistics
Matches: 144, Mismatches: 5, Indels: 12
0.89 0.03 0.07
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 99 0.69
40 31 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:126857416 original size:40 final size:40
Alignment explanation
Indices: 126857195--126857416 Score: 255
Period size: 39 Copynumber: 5.7 Consensus size: 40
126857185 TCGAATGATG
* *
126857195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
126857234 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126857274 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126857313 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
126857352 TCCGGG-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
126857392 -CCGGGCCATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
126857417 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 104 0.62
40 49 0.29
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:126865452 original size:79 final size:80
Alignment explanation
Indices: 126865321--126865517 Score: 303
Period size: 79 Copynumber: 2.5 Consensus size: 80
126865311 TCGAATGATG
* * *
126865321 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
126865385 TGTGCGAGTTACT-AA
65 TGTGCGAGTTACTAAA
126865400 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
126865464 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
126865480 TCCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
126865518 TAACCGGGCT
Statistics
Matches: 109, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
79 65 0.60
80 41 0.38
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:126865545 original size:40 final size:40
Alignment explanation
Indices: 126865321--126865517 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
126865311 TCGAATGATG
* * *
126865321 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
126865361 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
126865400 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
126865440 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
126865480 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
126865518 TAACCGGGCT
Statistics
Matches: 148, Mismatches: 4, Indels: 10
0.91 0.02 0.06
Matches are distributed among these distances:
39 40 0.27
40 97 0.66
41 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:126865559 original size:40 final size:40
Alignment explanation
Indices: 126865374--126865564 Score: 119
Period size: 40 Copynumber: 4.8 Consensus size: 40
126865364 GGACTAAGAT
** * *
126865374 CCGAAGGCATTTGTGCGAGTTACTA-ATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGA-TAAG-TC
** *
126865413 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
126865453 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
126865493 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
126865533 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
126865565 TTAAACTCCG
Statistics
Matches: 139, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 29 0.21
40 105 0.76
41 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:126871567 original size:40 final size:40
Alignment explanation
Indices: 126871482--126871632 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
126871472 AATTGAATGA
* * *
126871482 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
126871522 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
126871563 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
126871602 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
126871633 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:126871646 original size:40 final size:40
Alignment explanation
Indices: 126871518--126871648 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
126871508 TATGCTGGAA
* * *
126871518 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
126871558 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
126871598 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
126871638 ATTATATCCGG
1 ATTATATCCGG
126871649 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:126878058 original size:40 final size:40
Alignment explanation
Indices: 126877973--126878123 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
126877963 AATTGAATGA
* * *
126877973 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
126878013 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
126878054 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
126878093 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
126878124 ACTGGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:126886042 original size:68 final size:70
Alignment explanation
Indices: 126885970--126886167 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
126885960 ACACCCTGTA
* * * *
126885970 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
126886032 ATAAAT
65 ATAAAT
*
126886038 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
126886103 ATAAAT
65 ATAAAT
*
126886109 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
126886168 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:126886081 original size:41 final size:41
Alignment explanation
Indices: 126886036--126886153 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
126886026 TGAAAGATAA
126886036 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
126886077 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
126886107 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
126886148 ATGTAG
1 ATGTAG
126886154 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:126886093 original size:71 final size:71
Alignment explanation
Indices: 126886004--126886167 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
126885994 GAGATGTATC
126886004 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
126886069 AGGACA
66 AGGACA
126886075 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
126886140 AGGACA
66 AGGACA
126886146 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
126886168 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:126893610 original size:68 final size:70
Alignment explanation
Indices: 126893538--126893735 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
126893528 ACACCCTGTA
* * * *
126893538 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
126893600 ATAAAT
65 ATAAAT
*
126893606 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
126893671 ATAAAT
65 ATAAAT
*
126893677 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
126893736 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:126893649 original size:41 final size:41
Alignment explanation
Indices: 126893604--126893721 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
126893594 TGAAAGATAA
126893604 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
126893645 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
126893675 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
126893716 ATGTAG
1 ATGTAG
126893722 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:126893661 original size:71 final size:71
Alignment explanation
Indices: 126893572--126893735 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
126893562 GAGATGTATC
126893572 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
126893637 AGGACA
66 AGGACA
126893643 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
126893708 AGGACA
66 AGGACA
126893714 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
126893736 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:126896391 original size:40 final size:40
Alignment explanation
Indices: 126896306--126896456 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
126896296 AATTGAATGA
* * *
126896306 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
126896346 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
126896387 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
126896426 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
126896457 ACGTGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:126904315 original size:40 final size:40
Alignment explanation
Indices: 126904249--126904399 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
126904239 AAATTGAATG
* * *
126904249 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
126904288 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
126904328 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
126904368 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
126904400 ACGTGTTATA
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:126912326 original size:40 final size:40
Alignment explanation
Indices: 126912241--126912391 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
126912231 AATTGAATGA
* * *
126912241 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
126912281 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
126912322 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
126912361 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
126912392 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:126912405 original size:40 final size:40
Alignment explanation
Indices: 126912278--126912407 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
126912268 ATGCTGGAAA
* * * *
126912278 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
126912318 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
126912358 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
126912398 TTATATCCGG
1 TTATATCCGG
126912408 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:126914182 original size:6 final size:6
Alignment explanation
Indices: 126914171--126914357 Score: 154
Period size: 6 Copynumber: 30.8 Consensus size: 6
126914161 AACCAAAATG
* * *
126914171 AGAATC AGAATC AGAATC A-ATAAC AAAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAATC AGA-ATC
* *
126914219 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
126914268 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
126914316 AAAATC AGAATC AGAATT ACGTGAT- AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
126914358 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 123 0.84
7 9 0.06
8 4 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:126914186 original size:30 final size:30
Alignment explanation
Indices: 126914150--126914357 Score: 173
Period size: 30 Copynumber: 7.1 Consensus size: 30
126914140 AAGAAACATT
*
126914150 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAAAATCAGAATCAGA
* **
126914180 ATCAGAATCAATAACAAAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* *
126914210 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAAAATCAGAATCAGA
* *
126914240 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAAAATCAGAATCAGA
*
126914271 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* * * *
126914295 ATCAGTATTAGTAACAGAATCAAAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* *
126914325 ATCAGAATTACGTG-ATAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAAAATCAGAATCAGA
126914356 AT
1 AT
126914358 GTGAATGCAA
Statistics
Matches: 151, Mismatches: 15, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
24 22 0.15
27 1 0.01
28 1 0.01
29 1 0.01
30 83 0.55
31 43 0.28
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAAAATCAGAATCAGA
Found at i:126914286 original size:85 final size:85
Alignment explanation
Indices: 126914171--126914357 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
126914161 AACCAAAATG
*
126914171 AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
*
126914236 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
* * *
126914256 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAAAAT
1 AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
*
126914321 CAGAATCAGAATTACGTGAT
66 CAGAATCAGAATTACGTGAC
126914341 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
126914358 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
CAGAATCAGAATTACGTGAC
Found at i:126914760 original size:22 final size:22
Alignment explanation
Indices: 126914712--126914770 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
126914702 GTAAATACGT
*
126914712 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
126914734 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
126914756 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
126914771 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:126914937 original size:27 final size:26
Alignment explanation
Indices: 126914858--126914940 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
126914848 TCGATCGGTC
* * *
126914858 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
126914884 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
126914911 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
126914938 AAC
1 AAC
126914941 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:126915184 original size:26 final size:27
Alignment explanation
Indices: 126915148--126915466 Score: 191
Period size: 27 Copynumber: 11.7 Consensus size: 27
126915138 TGGTAATTTC
* *
126915148 ACCCCACAAGGGTATCTCGATAATT-T
1 ACCCTACAAGGGTATTTCGATAATTCT
* * *
126915174 ACCCTATAAGGGTATTTCGGTATTTCT
1 ACCCTACAAGGGTATTTCGATAATTCT
*
126915201 ACCCTACAAGGGTATTTTGATAATTCT
1 ACCCTACAAGGGTATTTCGATAATTCT
* *** * * *
126915228 ACCCTACAGGGGTAGGGCAAAACAGTCATTT
1 ACCCTACAAGGGTATTTCGATA-A-T--TCT
* * ** * *
126915259 AACACC--CTAGGGGCAAAAT-GGTAATTTT
1 -AC-CCTAC-AAGGG-TATTTCGATAATTCT
* * *
126915287 ACCCCACAAGGGTATCTCGGTAATTCT
1 ACCCTACAAGGGTATTTCGATAATTCT
** * * *
126915314 ACCCTGTAGGGGTATTTCGGTATTTCT
1 ACCCTACAAGGGTATTTCGATAATTCT
126915341 ACCCTACAAGGGTATTTCGATAATTCT
1 ACCCTACAAGGGTATTTCGATAATTCT
* * * *
126915368 ACCCTATAGGGGTATTTTGGTAATTCT
1 ACCCTACAAGGGTATTTCGATAATTCT
* *
126915395 ATCCTATAAGGGTATTTC-AGTAATTCT
1 ACCCTACAAGGGTATTTCGA-TAATTCT
* *
126915422 ACCCTATAGGGGTATTTCGGA-AATTCT
1 ACCCTACAAGGGTATTTC-GATAATTCT
126915449 ACCCTACAAGGGTATTTC
1 ACCCTACAAGGGTATTTC
126915467 AGTAATTTCA
Statistics
Matches: 226, Mismatches: 52, Indels: 29
0.74 0.17 0.09
Matches are distributed among these distances:
26 24 0.11
27 179 0.79
28 5 0.02
29 2 0.01
30 1 0.00
31 4 0.02
32 8 0.04
33 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
ACCCTACAAGGGTATTTCGATAATTCT
Found at i:126915344 original size:54 final size:54
Alignment explanation
Indices: 126915278--126915473 Score: 286
Period size: 54 Copynumber: 3.6 Consensus size: 54
126915268 GGGGCAAAAT
* * * * *
126915278 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTGTAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
* *
126915332 GGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTATAGGGGTATTTC
* *
126915386 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
*
126915440 GGAAATTCTACCCTACAAGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
126915474 TCACAATCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 125 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
Found at i:126915390 original size:81 final size:81
Alignment explanation
Indices: 126915281--126915473 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 81
126915271 GCAAAATGGT
* * * * * * *
126915281 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTGTAGGGGTATTTCGGTATTTCTACCCT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
126915346 ACAAGGGTATTTC-GA
66 ACAAGGGTATTTCGGA
* * * *
126915361 TAATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 -AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
* *
126915426 TATAGGGGTATTTCGGA
65 TACAAGGGTATTTCGGA
*
126915443 AATTCTACCCTACAAGGGTATTTCAGTAATT
1 AATTCTACCCTACAAGGGTATTTCGGTAATT
126915474 TCACAATCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 92 0.98
82 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (81 bp):
AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGA
Found at i:126916076 original size:27 final size:27
Alignment explanation
Indices: 126915478--126916075 Score: 659
Period size: 27 Copynumber: 22.1 Consensus size: 27
126915468 GTAATTTCAC
* * *
126915478 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
126915505 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
126915532 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** * *
126915559 AATC-AAGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
126915585 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
126915612 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
** * *
126915639 AATCGAGGGTAAAACAATAGTTTTTATA
1 AATCGAGGGTAAAACGGTA-ATTCTATA
**
126915667 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
126915694 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
126915721 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
126915748 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
126915775 AATTGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
126915802 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* **
126915829 AATCGAGTGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
126915856 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
126915883 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
126915910 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
126915937 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
126915964 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* ** *
126915991 AATCGAGTGTAAAACAATAACTT-TAAA
1 AATCGAGGGTAAAACGGTAA-TTCTATA
126916018 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
126916045 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
126916072 AATC
1 AATC
126916076 AGGAGTACTT
Statistics
Matches: 498, Mismatches: 61, Indels: 24
0.85 0.10 0.04
Matches are distributed among these distances:
26 26 0.05
27 442 0.89
28 30 0.06
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:126918085 original size:6 final size:6
Alignment explanation
Indices: 126918074--126918314 Score: 191
Period size: 6 Copynumber: 40.2 Consensus size: 6
126918064 AAAATAAGAT
*
126918074 TCAGAA TCAGAA TCAGCATA ACAGAA TCAGAA TCAG-A TC--AA T-AGTAA
1 TCAGAA TCAGAA TCAG-A-A TCAGAA TCAGAA TCAGAA TCAGAA TCAG-AA
* *
126918121 -CAGAA TCAGAA TCAGAA TCAGAA TTAG-G TGACAGAA TCAGAA TCAGAA
1 TCAGAA TCAGAA TCAGAA TCAGAA TCAGAA T--CAGAA TCAGAA TCAGAA
* *
126918169 TCAGTAA -CAGAA TCAGAA TCAGAA TCAGTA TTAGTAA -CAGAA TCAGAA
1 TCAG-AA TCAGAA TCAGAA TCAGAA TCAGAA TCAG-AA TCAGAA TCAGAA
* * *
126918217 TCAGTAA -CAGAA TCAGAA TCAGAA TCAGTA TTAGTAA -CAGAA TCAGTA
1 TCAG-AA TCAGAA TCAGAA TCAGAA TCAGAA TCAG-AA TCAGAA TCAGAA
* * *
126918265 TTAGTAA -CAGAA TCAGAA TCAGAA TTACGTGA -CAGAA TCAGAA TCAGAA
1 TCAG-AA TCAGAA TCAGAA TCAGAA TCA-G-AA TCAGAA TCAGAA TCAGAA
126918314 T
1 T
126918315 GTAATGCATC
Statistics
Matches: 189, Mismatches: 22, Indels: 48
0.73 0.08 0.19
Matches are distributed among these distances:
4 2 0.01
5 17 0.09
6 151 0.80
7 13 0.07
8 6 0.03
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
TCAGAA
Found at i:126918094 original size:24 final size:25
Alignment explanation
Indices: 126918074--126918314 Score: 239
Period size: 24 Copynumber: 9.5 Consensus size: 25
126918064 AAAATAAGAT
*
126918074 TCAGAATCAGAATCAGCATAACAGAA
1 TCAGAATCAGAATCAGTAT-ACAGAA
*
126918100 TCAGAATCAG-ATCAATAGTAACAGAA
1 TCAGAATCAGAATCAGTA-T-ACAGAA
126918126 TCAGAATCAGAATCAGAATTAGGTGACAGAA
1 TCAGAATCAGAATCAG---TA--T-ACAGAA
126918157 TCAGAATCAGAATCAGTA-ACAGAA
1 TCAGAATCAGAATCAGTATACAGAA
*
126918181 TCAGAATCAGAATCAGTAT-TAGTAA
1 TCAGAATCAGAATCAGTATACAG-AA
126918206 -CAGAATCAGAATCAGTA-ACAGAA
1 TCAGAATCAGAATCAGTATACAGAA
*
126918229 TCAGAATCAGAATCAGTAT-TAGTAA
1 TCAGAATCAGAATCAGTATACAG-AA
* *
126918254 -CAGAATCAGTATTAGTA-ACAGAA
1 TCAGAATCAGAATCAGTATACAGAA
* *
126918277 TCAGAATCAGAATTACGT-GACAGAA
1 TCAGAATCAGAATCA-GTATACAGAA
126918302 TCAGAATCAGAAT
1 TCAGAATCAGAAT
126918315 GTAATGCATC
Statistics
Matches: 188, Mismatches: 11, Indels: 33
0.81 0.05 0.14
Matches are distributed among these distances:
23 4 0.02
24 94 0.50
25 30 0.16
26 28 0.15
27 4 0.02
28 2 0.01
30 2 0.01
31 24 0.13
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (25 bp):
TCAGAATCAGAATCAGTATACAGAA
Done.