Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 413 of 770
Found at i:126920831 original size:27 final size:28
Alignment explanation
Indices: 126920801--126920870 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
126920791 ATAATAAGTC
*
126920801 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
126920828 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
126920856 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
126920871 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:126928747 original size:27 final size:28
Alignment explanation
Indices: 126928717--126928786 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
126928707 ATAATAAGTC
*
126928717 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
126928744 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
126928772 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
126928787 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:126934894 original size:80 final size:80
Alignment explanation
Indices: 126934755--126935012 Score: 378
Period size: 80 Copynumber: 3.2 Consensus size: 80
126934745 CGGATGATAA
* * * * *
126934755 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCAGGCTAAGTCCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
126934819 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
*
126934835 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
126934900 TGCGAGTTACTATAA
66 TGCGAGTTACTATAT
126934915 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
* *
126934980 AGCAAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
* *
126934995 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
126935013 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
79 16 0.10
80 146 0.90
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:126934993 original size:40 final size:40
Alignment explanation
Indices: 126934751--126934979 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
126934741 TATTCGGATG
* *
126934751 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
126934791 A-ATTCCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
126934831 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
126934871 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
126934911 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
126934951 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
126934980 AGCAAGTAGC
Statistics
Matches: 177, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 175 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:126937312 original size:29 final size:29
Alignment explanation
Indices: 126937279--126937438 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
126937269 GTGACGAGAT
126937279 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126937308 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126937337 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
126937366 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
126937395 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
126937424 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
126937439 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:126945368 original size:29 final size:29
Alignment explanation
Indices: 126945335--126945494 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
126945325 GTGACGAGAT
126945335 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126945364 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126945393 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
126945422 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
126945451 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
126945480 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
126945495 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:126955705 original size:29 final size:28
Alignment explanation
Indices: 126955673--126955775 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
126955663 GTGACGAGAT
* *
126955673 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
126955702 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
126955731 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
126955760 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
126955776 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:126963501 original size:29 final size:28
Alignment explanation
Indices: 126963469--126963571 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
126963459 GTGACGAGAT
* *
126963469 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
126963498 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
126963527 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
126963556 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
126963572 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:126967957 original size:3 final size:3
Alignment explanation
Indices: 126967940--126967987 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
126967930 TTTCGCTTGA
* * * *
126967940 TTC TTC CTC -TC TTC TTC TTC TTC GTC GTC GTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
126967987 T
1 T
126967988 CACTCTCAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.00, C:0.35, G:0.06, T:0.58
Consensus pattern (3 bp):
TTC
Found at i:126971357 original size:37 final size:37
Alignment explanation
Indices: 126971295--126971403 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
126971285 AGCTCAGACG
* * * *
126971295 AAATCTCCACACGAAGTTATTGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
126971332 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
126971369 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
126971404 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:126971519 original size:48 final size:48
Alignment explanation
Indices: 126971448--126971593 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
126971438 TGTTACAACA
* * *
126971448 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
* *
126971496 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
* * *
126971544 TTCACATTAGCTATTCGGATTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
126971592 TT
1 TT
126971594 ATTTATCGTG
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 90 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATAT
Found at i:126975342 original size:40 final size:40
Alignment explanation
Indices: 126975257--126975407 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
126975247 AATTGAATGA
* * *
126975257 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
126975297 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
126975338 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
126975377 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
126975408 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:126975421 original size:40 final size:40
Alignment explanation
Indices: 126975294--126975423 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
126975284 ATGCTGGAAA
* * * *
126975294 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
126975334 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
126975374 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
126975414 TTATATCCGG
1 TTATATCCGG
126975424 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:126985605 original size:29 final size:29
Alignment explanation
Indices: 126985572--126985729 Score: 162
Period size: 29 Copynumber: 5.5 Consensus size: 29
126985562 GTGACGAGAT
126985572 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126985601 TGGCACTAAGTGTGCATGCTGG-AA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126985628 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
126985657 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
126985686 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
126985715 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
126985730 GAAATCGAGT
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
27 25 0.23
28 6 0.06
29 75 0.70
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:126985636 original size:27 final size:27
Alignment explanation
Indices: 126985572--126985655 Score: 150
Period size: 27 Copynumber: 3.0 Consensus size: 27
126985562 GTGACGAGAT
126985572 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGG-AA-ATA
126985601 TGGCACTAAGTGTGCATGCTGGAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATA
126985628 TGGCACTAAGTGTGCATGCTGGAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATA
126985655 T
1 T
126985656 ACGGCACTGG
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
27 31 0.56
28 2 0.04
29 22 0.40
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (27 bp):
TGGCACTAAGTGTGCATGCTGGAAATA
Found at i:126985640 original size:56 final size:57
Alignment explanation
Indices: 126985568--126985731 Score: 183
Period size: 56 Copynumber: 2.9 Consensus size: 57
126985558 TACGGTGACG
*
126985568 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTGGA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGA
* **
126985624 A-ATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGA
* * ** * *
126985680 AGGGTATGGCACTATGTGTGCGGGCT-TAAATCACATGGCACTAAGTGTGCGA
1 A-GATATGGCACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
126985732 AATCGAGTAT
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
55 2 0.02
56 48 0.53
57 5 0.06
58 35 0.39
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (57 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGA
Found at i:126993758 original size:29 final size:29
Alignment explanation
Indices: 126993725--126993884 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
126993715 GTGACGAGAT
126993725 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126993754 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
126993783 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
126993812 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
126993841 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
126993870 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
126993885 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:126997407 original size:29 final size:29
Alignment explanation
Indices: 126997228--126997410 Score: 287
Period size: 29 Copynumber: 6.3 Consensus size: 29
126997218 AAGTCTACAT
* *
126997228 ACATGCATATGGCCCACTAGG-CCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
126997256 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
126997285 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
126997314 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
126997343 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
126997372 ACATTCATATGGCCCATTTGACCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
126997401 ACATTCATAT
1 ACATTCATAT
126997411 TCATACTTTC
Statistics
Matches: 146, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 18 0.12
29 128 0.88
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:126997642 original size:16 final size:16
Alignment explanation
Indices: 126997621--126997664 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
126997611 GTAGCCAAAC
126997621 TTTTGGCTTTTC-GTCA
1 TTTTGGCTTTTCGGT-A
126997637 TTTTGGCTTTTCGGTA
1 TTTTGGCTTTTCGGTA
*
126997653 TTTTAGCTTTTC
1 TTTTGGCTTTTC
126997665 AGCATTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 24 0.92
17 2 0.08
ACGTcount: A:0.07, C:0.16, G:0.18, T:0.59
Consensus pattern (16 bp):
TTTTGGCTTTTCGGTA
Found at i:126997671 original size:16 final size:15
Alignment explanation
Indices: 126997621--126997671 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
126997611 GTAGCCAAAC
126997621 TTTTGGCTTTTCGTCA
1 TTTTGGCTTTTCG-CA
*
126997637 TTTTGGCTTTTCGGTA
1 TTTTGGCTTTTC-GCA
*
126997653 TTTTAGCTTTTCAGCA
1 TTTTGGCTTTTC-GCA
126997669 TTT
1 TTT
126997672 CAACTTTTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 29 0.97
17 1 0.03
ACGTcount: A:0.10, C:0.16, G:0.18, T:0.57
Consensus pattern (15 bp):
TTTTGGCTTTTCGCA
Found at i:127016092 original size:15 final size:15
Alignment explanation
Indices: 127016072--127016101 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
127016062 TACAAATTCG
127016072 TGCTCTTCTCACCAT
1 TGCTCTTCTCACCAT
127016087 TGCTCTTCTCACCAT
1 TGCTCTTCTCACCAT
127016102 AACAACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.40, G:0.07, T:0.40
Consensus pattern (15 bp):
TGCTCTTCTCACCAT
Found at i:127019772 original size:48 final size:48
Alignment explanation
Indices: 127019654--127019820 Score: 150
Period size: 48 Copynumber: 3.6 Consensus size: 48
127019644 CAGTAAGATT
* * * *
127019654 CCAATGCCATATACCAGATATGGTCTTACATGGGATCACAAATCGA--
1 CCAATGCCATATCCCAGATATGGTCTTACACGAGATCACATATCGATG
* * *
127019700 --AA--CCGATAGCCCAGCTATGGTCTTACACGATG-TCTCATATCGATG
1 CCAATGCC-ATATCCCAGATATGGTCTTACACGA-GATCACATATCGATG
* * * *
127019745 TCAATGCCATATCCCAGATATGCTCTTACATGAGATCACATGTCGATG
1 CCAATGCCATATCCCAGATATGGTCTTACACGAGATCACATATCGATG
* *
127019793 CCAATGCCATGTCCCAGACATGGTCTTA
1 CCAATGCCATATCCCAGATATGGTCTTA
127019821 TATGGATCTC
Statistics
Matches: 95, Mismatches: 17, Indels: 16
0.74 0.13 0.12
Matches are distributed among these distances:
42 2 0.02
43 29 0.31
44 3 0.03
47 3 0.03
48 56 0.59
49 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
CCAATGCCATATCCCAGATATGGTCTTACACGAGATCACATATCGATG
Found at i:127030498 original size:48 final size:48
Alignment explanation
Indices: 127030441--127030551 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
127030431 CGATATTGTC
* * * *
127030441 TTACTTGGGATCACAT-GTCGATGCCAATGTCATGTCCCAGACATGGTA
1 TTACATGGGATCACATAAT-GATGCCAAAGCCATGTCCCAGACATGGTA
* * * *
127030489 TTATATGGGATCTCATAATGATTCCAAAGCCATGTCCCAGACATGGTC
1 TTACATGGGATCACATAATGATGCCAAAGCCATGTCCCAGACATGGTA
*
127030537 TTCCATGGGATCACA
1 TTACATGGGATCACA
127030552 CATAACCCTA
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 50 0.98
49 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (48 bp):
TTACATGGGATCACATAATGATGCCAAAGCCATGTCCCAGACATGGTA
Found at i:127032700 original size:41 final size:41
Alignment explanation
Indices: 127032655--127032772 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
127032645 TGAAAGATAA
127032655 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
127032696 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
127032726 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
127032767 ATGTAG
1 ATGTAG
127032773 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:127032711 original size:71 final size:71
Alignment explanation
Indices: 127032623--127032786 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
127032613 GAGATGTATC
127032623 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
127032688 AGGACA
66 AGGACA
127032694 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
127032759 AGGACA
66 AGGACA
127032765 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
127032787 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:127033510 original size:10 final size:10
Alignment explanation
Indices: 127033488--127033520 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
127033478 CGGCTGAACC
*
127033488 AAAAATTA-T
1 AAAAATTAGA
127033497 AAAAATTAGA
1 AAAAATTAGA
127033507 AAAAATTAGA
1 AAAAATTAGA
127033517 AAAA
1 AAAA
127033521 TTTATGAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (10 bp):
AAAAATTAGA
Found at i:127037638 original size:40 final size:39
Alignment explanation
Indices: 127037473--127037656 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
127037463 AAATTGAATG
* * *
127037473 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
127037513 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
127037553 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
127037593 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
127037632 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
127037657 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:127037681 original size:80 final size:81
Alignment explanation
Indices: 127037513--127037701 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
127037503 GCTGGAAATT
* * * *
127037513 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
127037578 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
127037594 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
127037657 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
127037673 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
127037702 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:127045674 original size:40 final size:39
Alignment explanation
Indices: 127045509--127045692 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
127045499 AAATTGAATG
* * *
127045509 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
127045549 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
127045589 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
127045629 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
127045668 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
127045693 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:127045717 original size:80 final size:81
Alignment explanation
Indices: 127045549--127045737 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
127045539 GCTGGAAATT
* * * *
127045549 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
127045614 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
127045630 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
127045693 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
127045709 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
127045738 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:127049861 original size:24 final size:24
Alignment explanation
Indices: 127049833--127049879 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
127049823 TATAAACTGA
127049833 GTGTATGTATTCCTGAAAGAGTAT
1 GTGTATGTATTCCTGAAAGAGTAT
127049857 GTGTATGTATTCCTGAAAGAGTA
1 GTGTATGTATTCCTGAAAGAGTA
127049880 ACTGAGATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.36
Consensus pattern (24 bp):
GTGTATGTATTCCTGAAAGAGTAT
Found at i:127051419 original size:49 final size:49
Alignment explanation
Indices: 127051290--127051565 Score: 308
Period size: 49 Copynumber: 5.6 Consensus size: 49
127051280 ACATGTGACC
** *
127051290 ATGTGATTATGTGATCCCGTATAAGACCATATCTAGGATATGGCATC-G-
1 ATGTGA-TATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* * *
127051338 GTGTGATTATATGTTTTCGTATAAGACCATATCTGGGATATGGCATCAGT
1 ATGTGA-TATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* * * * *
127051388 ATGTAATATGTAATTTCGTACAAGACCATATCTAGGATATGGCATCGGT
1 ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* *
127051437 ATGTGATATGTGATTCCGTATAAAACCATATCTGGGATATGGCATCAGT
1 ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
* * * *
127051486 ATGTGATATGTGATTTCGTAGAAGACCATAGCTGGGCTATGGCATCGGCT
1 ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAG-T
* *
127051536 -TGTGATTATGTGA-CTCTGTTTAAGACCATA
1 ATGTGA-TATGTGATTTC-GTATAAGACCATA
127051566 GTTTTACTAT
Statistics
Matches: 193, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
48 41 0.21
49 129 0.67
50 23 0.12
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (49 bp):
ATGTGATATGTGATTTCGTATAAGACCATATCTGGGATATGGCATCAGT
Found at i:127051486 original size:98 final size:98
Alignment explanation
Indices: 127051307--127051548 Score: 353
Period size: 98 Copynumber: 2.5 Consensus size: 98
127051297 TATGTGATCC
* * * * *
127051307 CGTATAAGACCATATCTAGGATATGGCATCGG-TGTGATTATATGTTTTCGTATAAGACCATATC
1 CGTACAAGACCATATCTAGGATATGGCATCGGTTGTGATTATGTGATTCCGTATAAAACCATATC
127051371 TGGGATATGGCATCAGTATGTAATATGTAATTT
66 TGGGATATGGCATCAGTATGTAATATGTAATTT
127051404 CGTACAAGACCATATCTAGGATATGGCATCGGTATGTGA-TATGTGATTCCGTATAAAACCATAT
1 CGTACAAGACCATATCTAGGATATGGCATCGGT-TGTGATTATGTGATTCCGTATAAAACCATAT
* *
127051468 CTGGGATATGGCATCAGTATGTGATATGTGATTT
65 CTGGGATATGGCATCAGTATGTAATATGTAATTT
* * * *
127051502 CGTAGAAGACCATAGCTGGGCTATGGCATCGGCTTGTGATTATGTGA
1 CGTACAAGACCATATCTAGGATATGGCATCGG-TTGTGATTATGTGA
127051549 CTCTGTTTAA
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
97 31 0.24
98 86 0.66
99 13 0.10
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (98 bp):
CGTACAAGACCATATCTAGGATATGGCATCGGTTGTGATTATGTGATTCCGTATAAAACCATATC
TGGGATATGGCATCAGTATGTAATATGTAATTT
Found at i:127053727 original size:40 final size:39
Alignment explanation
Indices: 127053682--127053810 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
127053672 CGGAATATAA
127053682 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
127053722 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* ** * *
127053762 CCGGATGTAGCCACT--AGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTGCA-CAAATGCCTTCGGGTCTTAGC
127053800 CCGGATATAAT
1 CCGGATATAAT
127053811 TTCCAGCATA
Statistics
Matches: 71, Mismatches: 16, Indels: 6
0.76 0.17 0.06
Matches are distributed among these distances:
37 1 0.01
38 26 0.37
39 1 0.01
40 43 0.61
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:127061730 original size:40 final size:40
Alignment explanation
Indices: 127061685--127061852 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
127061675 CGGAATATAA
127061685 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
127061725 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
127061765 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
127061805 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
127061845 CCGGATAT
1 CCGGATAT
127061853 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:127061835 original size:80 final size:80
Alignment explanation
Indices: 127061701--127061850 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
127061691 ATAATCACGT
*
127061701 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
127061765 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
127061781 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
127061844 CCCGGAT
64 CCCGGAT
127061851 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:127065289 original size:46 final size:45
Alignment explanation
Indices: 127065228--127065334 Score: 124
Period size: 46 Copynumber: 2.3 Consensus size: 45
127065218 CTTGAGCAAA
* * * * *
127065228 TAAACAATAAGCTCTATTGAAATGAAAACGGTAAGCTCTATTGATC
1 TAAACAGTAAGCTCTATTGAAAT-AAAACGATAAGCTCCAATGAGC
** *
127065274 TAAACAGTAAGCTCTATTGAGCTAAATCGATAAGCTCCAATGAGC
1 TAAACAGTAAGCTCTATTGAAATAAAACGATAAGCTCCAATGAGC
127065319 TGAAACAGTAAGCTCT
1 T-AAACAGTAAGCTCT
127065335 TACGAACTGA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 18 0.35
46 34 0.65
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (45 bp):
TAAACAGTAAGCTCTATTGAAATAAAACGATAAGCTCCAATGAGC
Found at i:127065330 original size:23 final size:22
Alignment explanation
Indices: 127065228--127065334 Score: 99
Period size: 22 Copynumber: 4.7 Consensus size: 22
127065218 CTTGAGCAAA
* **
127065228 TAAACAATAAGCTCTATTGAAA
1 TAAACAGTAAGCTCTATTGAGC
* *
127065250 TGAAAACGGTAAGCTCTATTGATC
1 T--AAACAGTAAGCTCTATTGAGC
127065274 TAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATTGAGC
* *
127065296 TAAATC-GATAAGCTCCAATGAGC
1 TAAA-CAG-TAAGCTCTATTGAGC
127065319 TGAAACAGTAAGCTCT
1 T-AAACAGTAAGCTCT
127065335 TACGAACTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
22 25 0.36
23 23 0.33
24 22 0.31
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATTGAGC
Found at i:127069048 original size:40 final size:40
Alignment explanation
Indices: 127069000--127069187 Score: 265
Period size: 40 Copynumber: 4.7 Consensus size: 40
127068990 GCTACTTGCT
127069000 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
127069040 CAAGTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
*
127069080 CAAATGCCTTCGGGACTTAGCCC-AGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGA-TTATAGTAACTCGCA
* * * *
127069120 CAAATGCCTTC-GGCCTTAGCCCGGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
*
127069159 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGATTAT
127069188 CATCCGAATA
Statistics
Matches: 131, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
39 33 0.25
40 97 0.74
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
Found at i:127069187 original size:79 final size:80
Alignment explanation
Indices: 127068967--127069187 Score: 288
Period size: 79 Copynumber: 2.8 Consensus size: 80
127068957 AAACCAAGTA
* * * * *
127068967 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGATTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
127069030 GTAACTCGCACAAGTG
65 GTAACTCGCACAAATG
* * *
127069046 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
127069111 TGACTCGCACAAATG
66 TAACTCGCACAAATG
* *
127069126 CCTTC-GGCCTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
127069188 CATCCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 63 0.50
80 61 0.49
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:127073436 original size:13 final size:13
Alignment explanation
Indices: 127073418--127073465 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
127073408 GTAGTCGTGT
127073418 TAGTTGTTTTCAC
1 TAGTTGTTTTCAC
* **
127073431 TAGTTGTTCTCTTT
1 TAGTTGTTTTC-AC
127073445 TAGTTGTTTTCAC
1 TAGTTGTTTTCAC
127073458 TAGTTGTT
1 TAGTTGTT
127073466 CTCTTTCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.12, C:0.12, G:0.17, T:0.58
Consensus pattern (13 bp):
TAGTTGTTTTCAC
Found at i:127073448 original size:27 final size:27
Alignment explanation
Indices: 127073417--127073471 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
127073407 AGTAGTCGTG
127073417 TTAGTTGTTTTCACTAGTTGTTCTCTT
1 TTAGTTGTTTTCACTAGTTGTTCTCTT
127073444 TTAGTTGTTTTCACTAGTTGTTCTCTT
1 TTAGTTGTTTTCACTAGTTGTTCTCTT
127073471 T
1 T
127073472 CAACTGTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.60
Consensus pattern (27 bp):
TTAGTTGTTTTCACTAGTTGTTCTCTT
Found at i:127076358 original size:23 final size:23
Alignment explanation
Indices: 127076317--127076404 Score: 72
Period size: 23 Copynumber: 3.8 Consensus size: 23
127076307 AGCTGATAAA
* * *
127076317 CAGTAAGCTCTATCAAGCTGAAT
1 CAGTAAGCTCCAACGAGCTGAAT
* * *
127076340 CAGTAAGGTCCAATGAGCTAAAAT
1 CAGTAAGCTCCAACGAGCT-GAAT
**
127076364 -AGTAAGCTCTTACGAGCTGAAT
1 CAGTAAGCTCCAACGAGCTGAAT
127076386 CAGTAAGCT-CATACGAGCT
1 CAGTAAGCTCCA-ACGAGCT
127076405 ATGGTGAGTC
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
22 3 0.06
23 43 0.88
24 3 0.06
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (23 bp):
CAGTAAGCTCCAACGAGCTGAAT
Found at i:127076404 original size:46 final size:46
Alignment explanation
Indices: 127076318--127076405 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
127076308 GCTGATAAAC
* *
127076318 AGTAAGCTCTATCAAGCTGAATCAGTAAGGTCCAATGAGCTAAAAT
1 AGTAAGCTCTATCAAGCTGAATCAGTAAGCTCCAACGAGCTAAAAT
*
127076364 AGTAAGCTCT-TACGAGCTGAATCAGTAAGCT-CATACGAGCTA
1 AGTAAGCTCTAT-CAAGCTGAATCAGTAAGCTCCA-ACGAGCTA
127076406 TGGTGAGTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 3 0.08
46 34 0.92
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTAAGCTCTATCAAGCTGAATCAGTAAGCTCCAACGAGCTAAAAT
Found at i:127080947 original size:7 final size:7
Alignment explanation
Indices: 127080931--127080985 Score: 74
Period size: 7 Copynumber: 7.7 Consensus size: 7
127080921 GGTCGTCCTA
127080931 AAACCCT
1 AAACCCT
*
127080938 AAACCTT
1 AAACCCT
127080945 AAACCCT
1 AAACCCT
127080952 AAACCCT
1 AAACCCT
*
127080959 AAACCTT
1 AAACCCT
127080966 AAAACCCT
1 -AAACCCT
*
127080974 AAACGCT
1 AAACCCT
127080981 AAACC
1 AAACC
127080986 AGCCTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
7 35 0.85
8 6 0.15
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:127080970 original size:22 final size:21
Alignment explanation
Indices: 127080931--127080985 Score: 92
Period size: 22 Copynumber: 2.6 Consensus size: 21
127080921 GGTCGTCCTA
127080931 AAACCCTAAACCTTAAACCCT
1 AAACCCTAAACCTTAAACCCT
127080952 AAACCCTAAACCTTAAAACCCT
1 AAACCCTAAACCTT-AAACCCT
*
127080974 AAACGCTAAACC
1 AAACCCTAAACC
127080986 AGCCTTGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.16
Consensus pattern (21 bp):
AAACCCTAAACCTTAAACCCT
Found at i:127085621 original size:68 final size:67
Alignment explanation
Indices: 127085549--127085698 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
127085539 CATCATGTGT
* * * *
127085549 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
127085611 ATGTAG
62 ATGTAG
** * *
127085617 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
127085682 AG
66 AG
127085684 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
127085699 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:127085654 original size:64 final size:64
Alignment explanation
Indices: 127085573--127085756 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
127085563 AGACATTATG
* *
127085573 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
127085637 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
127085702 AA
63 AA
* * * *
127085704 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
127085757 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:127090209 original size:9 final size:9
Alignment explanation
Indices: 127090181--127090233 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
127090171 ATAAACATGG
127090181 TATGTATGA
1 TATGTATGA
*
127090190 TATGCACATGA
1 TATG--TATGA
*
127090201 CATGTATGA
1 TATGTATGA
127090210 TATGTACATGA
1 TATGT--ATGA
127090221 TATGTATGA
1 TATGTATGA
127090230 TATG
1 TATG
127090234 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:127090222 original size:11 final size:11
Alignment explanation
Indices: 127090186--127090241 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
127090176 CATGGTATGT
*
127090186 ATGATATGCAC
1 ATGATATGTAC
*
127090197 ATGACATGT--
1 ATGATATGTAC
127090206 ATGATATGTAC
1 ATGATATGTAC
127090217 ATGATATGT--
1 ATGATATGTAC
*
127090226 ATGATATGCAC
1 ATGATATGTAC
127090237 ATGAT
1 ATGAT
127090242 GTATTCGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGTAC
Found at i:127090241 original size:20 final size:20
Alignment explanation
Indices: 127090175--127090241 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
127090165 ATTTTGATAA
*
127090175 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
127090195 ACATGACATGTATGATATGT
1 ACATGATATGTATGATATGC
127090215 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
127090235 ACATGAT
1 ACATGAT
127090242 GTATTCGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:127090353 original size:23 final size:24
Alignment explanation
Indices: 127090290--127090386 Score: 128
Period size: 25 Copynumber: 4.0 Consensus size: 24
127090280 GGAGGAAGTG
127090290 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
127090314 GATAAAA-GGCTTATGCCCCAGTTAT
1 --TAAAAGGGCTTATGCCCCAGTTAT
127090339 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
127090362 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
127090387 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
23 24 0.36
24 11 0.17
25 26 0.39
26 5 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:127090372 original size:48 final size:49
Alignment explanation
Indices: 127090290--127090386 Score: 137
Period size: 48 Copynumber: 2.0 Consensus size: 49
127090280 GGAGGAAGTG
*
127090290 TAAAAGGGCTTATGCCCCAGTTATGATAAAAGGCTTATGCC-CCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAAGGC-TAGGCCTCCAGTTAT
*
127090339 TAAAAGGGCTT-TGCCCCAGTTATTA-AAAGAGGCTAGGCCTCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAA-AGGCTAGGCCTCCAGTTAT
127090387 ATGATAAAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 8 0.18
48 25 0.57
49 11 0.25
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAAGGCTAGGCCTCCAGTTAT
Found at i:127090615 original size:31 final size:31
Alignment explanation
Indices: 127090580--127090642 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
127090570 CGTTTACAGT
127090580 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
127090611 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
127090642 A
1 A
127090643 GTGTGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:127094267 original size:2 final size:2
Alignment explanation
Indices: 127094260--127094294 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
127094250 TTGAGTATTG
127094260 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
127094295 GTTTCATGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:127095951 original size:46 final size:46
Alignment explanation
Indices: 127095769--127095941 Score: 301
Period size: 46 Copynumber: 3.8 Consensus size: 46
127095759 TATATATACA
** * * *
127095769 CATCTCATACATATCTCACATTAGCCATTCTGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
127095815 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
127095861 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
127095907 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
127095942 CGCCACATAT
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:127095996 original size:47 final size:47
Alignment explanation
Indices: 127095965--127096393 Score: 750
Period size: 47 Copynumber: 9.1 Consensus size: 47
127095955 CACTTCCACG
**
127095965 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
127096012 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
127096059 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
127096106 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
127096153 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
127096200 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
127096247 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
127096294 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
127096341 TTCATCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
127096388 TTCATC
1 TTCATC
127096394 TCATAAAATC
Statistics
Matches: 365, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 365 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:127096113 original size:25 final size:25
Alignment explanation
Indices: 127096084--127096161 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
127096074 ATTCGGCCTT
127096084 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* * *
127096109 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
127096131 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
127096156 ATCACA
1 ATCACA
127096162 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCAAGTTCACATTC
Found at i:127102513 original size:40 final size:40
Alignment explanation
Indices: 127102458--127102667 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
127102448 AACATTGGAA
127102458 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
127102498 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
127102538 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
127102578 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
127102617 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
127102658 CTATATCCGG
1 ATATATCCGG
127102668 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:127108792 original size:6 final size:6
Alignment explanation
Indices: 127108781--127108814 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
127108771 ATCCAAAAGT
127108781 TTTTAA TTTTAA TTTTAA TTTTTCAA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA -TTTT-AA TTTTAA TT
127108815 GTCTTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 16 0.62
7 8 0.31
8 2 0.08
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:127108810 original size:14 final size:13
Alignment explanation
Indices: 127108781--127108814 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
127108771 ATCCAAAAGT
127108781 TTTTAA-TTTTAA
1 TTTTAATTTTTAA
127108793 TTTTAATTTTTCAA
1 TTTTAATTTTT-AA
127108807 TTTTAATT
1 TTTTAATT
127108815 GTCTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.30
13 4 0.20
14 10 0.50
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:127108884 original size:18 final size:18
Alignment explanation
Indices: 127108855--127108891 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
127108845 GGCCCACACA
127108855 CTAGTTAGTTT-ATTTTC
1 CTAGTTAGTTTAATTTTC
127108872 CTAGTTCAGTTTAATTTTC
1 CTAGTT-AGTTTAATTTTC
127108891 C
1 C
127108892 AGTACAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 5 0.28
19 7 0.39
ACGTcount: A:0.19, C:0.16, G:0.11, T:0.54
Consensus pattern (18 bp):
CTAGTTAGTTTAATTTTC
Found at i:127184184 original size:29 final size:29
Alignment explanation
Indices: 127184151--127184224 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
127184141 CCTTCGAGCT
127184151 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
127184180 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
127184209 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
127184225 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:127184185 original size:58 final size:58
Alignment explanation
Indices: 127184092--127184224 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
127184082 ATACTCGATT
* * * * *
127184092 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
127184150 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
127184208 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
127184225 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:127188468 original size:39 final size:39
Alignment explanation
Indices: 127188417--127188599 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 39
127188407 AATGATCGAG
*
127188417 TGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
127188456 TGATATCCGGGCTAAGCCCGAAGGTAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
127188495 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
127188534 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
127188574 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
127188600 GTTTGAACGA
Statistics
Matches: 123, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 85 0.69
40 38 0.31
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:127201275 original size:22 final size:22
Alignment explanation
Indices: 127201247--127201290 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
127201237 AAAAATAATC
127201247 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
* *
127201269 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTAATTAT
127201291 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:127201289 original size:10 final size:10
Alignment explanation
Indices: 127201235--127201289 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
127201225 TGCAAATCTG
*
127201235 TTAAAAATAA
1 TTAAAATTAA
*
127201245 TCAAAATTAA
1 TTAAAATTAA
*
127201255 TCAAAATTAA
1 TTAAAATTAA
127201265 TTATAAAATTAA
1 -T-TAAAATTAA
*
127201277 TTAAAATTCA
1 TTAAAATTAA
127201287 TTA
1 TTA
127201290 TGTTAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 29 0.74
11 2 0.05
12 8 0.21
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.36
Consensus pattern (10 bp):
TTAAAATTAA
Found at i:127208089 original size:40 final size:40
Alignment explanation
Indices: 127208034--127208220 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
127208024 TGAATGATAC
* * *
127208034 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
127208074 CCGGGCTAAGACCCGAAGGCATTGGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
127208114 CCGGGTTAAGACCCGAAGGCACTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
127208154 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
127208194 CCGGGTTAAGA-CCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
127208221 TTGCGGTTAT
Statistics
Matches: 131, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 15 0.11
40 114 0.87
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:127208167 original size:80 final size:80
Alignment explanation
Indices: 127208030--127208220 Score: 287
Period size: 80 Copynumber: 2.4 Consensus size: 80
127208020 CATTTGAATG
* * * * *
127208030 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
127208095 TTGGTGCGAGTTGCT
66 TTGGTGCGAGTTGCT
* *
127208110 ATATCCGGGTTAAGACCCGAAGGCACTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
*
127208174 ATTTGTGCGAGTTGCT
65 ATTGGTGCGAGTTGCT
127208190 ATACCCGGGTTAAGA-CCGAAGGCAATTGTGC
1 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
127208221 TTGCGGTTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 15 0.15
80 84 0.83
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTGGTGCGAGTTGCT
Found at i:127216208 original size:40 final size:40
Alignment explanation
Indices: 127216153--127216360 Score: 269
Period size: 40 Copynumber: 5.2 Consensus size: 40
127216143 TGAATGATAC
* * *
127216153 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
127216193 CCGGGCTAAGACCCGAAGGCATTGGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
127216233 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
127216273 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
127216312 CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
127216353 CC-GGCTAA
1 CCGGGCTAA
127216361 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.05
40 137 0.93
41 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:127216286 original size:80 final size:79
Alignment explanation
Indices: 127216153--127216360 Score: 303
Period size: 80 Copynumber: 2.6 Consensus size: 79
127216143 TGAATGATAC
* * *
127216153 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTG
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTG
127216217 GTGCGAGTTGCTATA
65 GTGCGAGTTGCTATA
* *
127216232 TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 -CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTG
127216297 GTGCGAGTTGCTATA
65 GTGCGAGTTGCTATA
* * *
127216312 CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CC-GGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
127216361 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 8 0.07
80 107 0.91
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTGG
TGCGAGTTGCTATA
Found at i:127221324 original size:16 final size:16
Alignment explanation
Indices: 127221303--127221339 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
127221293 CGACAAATCA
*
127221303 CGAAATGCCAGAAAGC
1 CGAAATGCCAAAAAGC
127221319 CGAAATGCCAAAAAGC
1 CGAAATGCCAAAAAGC
127221335 CGAAA
1 CGAAA
127221340 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.24, G:0.22, T:0.05
Consensus pattern (16 bp):
CGAAATGCCAAAAAGC
Found at i:127221583 original size:28 final size:29
Alignment explanation
Indices: 127221543--127221598 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
127221533 ATTGCATGAC
127221543 TATGAATGTGA-TTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
127221571 TATGAATGTGATTTGGGCCTAATGGGCC
1 TATGAATGTGATTTGGGCCTAATGGGCC
127221599 TAGTGGTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:127234243 original size:28 final size:28
Alignment explanation
Indices: 127234178--127234278 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
127234168 ATAGTGAATC
*
127234178 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
127234207 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
127234235 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
127234265 CGCACACTTAGTGC
1 CGCACACTTAGTGC
127234279 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:127242579 original size:40 final size:40
Alignment explanation
Indices: 127242513--127242679 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
127242503 AAATTGAATG
* * *
127242513 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
127242552 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
127242592 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
127242632 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
127242672 ATATCCGG
1 ATATCCGG
127242680 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:127250564 original size:40 final size:40
Alignment explanation
Indices: 127250498--127250664 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
127250488 AAATTGAATG
* * *
127250498 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
127250537 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
127250577 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
127250617 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
127250657 ATATCCGG
1 ATATCCGG
127250665 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:127259243 original size:34 final size:34
Alignment explanation
Indices: 127259200--127259298 Score: 198
Period size: 34 Copynumber: 2.9 Consensus size: 34
127259190 ATTTAGAGTC
127259200 AGAATAATAAGTGAAGTCTAGGTGGATTCTTGTT
1 AGAATAATAAGTGAAGTCTAGGTGGATTCTTGTT
127259234 AGAATAATAAGTGAAGTCTAGGTGGATTCTTGTT
1 AGAATAATAAGTGAAGTCTAGGTGGATTCTTGTT
127259268 AGAATAATAAGTGAAGTCTAGGTGGATTCTT
1 AGAATAATAAGTGAAGTCTAGGTGGATTCTT
127259299 TCTTGGGTGT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.34
Consensus pattern (34 bp):
AGAATAATAAGTGAAGTCTAGGTGGATTCTTGTT
Found at i:127264847 original size:6 final size:6
Alignment explanation
Indices: 127264836--127264893 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
127264826 TCAAAAATAG
** * * *
127264836 ATAAAA ATAAAA AT-AAA ATTTAA ATAAAA ATAATA ATAATA ATAATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
*
127264883 ATAATA ATAAA
1 ATAAAA ATAAA
127264894 TAAATAAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 5 0.11
6 41 0.89
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (6 bp):
ATAAAA
Found at i:127264872 original size:3 final size:3
Alignment explanation
Indices: 127264858--127264892 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
127264848 ATAAAATTTA
*
127264858 AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
127264893 ATAAATAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:127271452 original size:21 final size:22
Alignment explanation
Indices: 127271414--127271461 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
127271404 ATAATTTTCA
* *
127271414 TTTTT-TTTCATGTTCAAGTTT
1 TTTTTATTTCATGTACAAGATT
127271435 TTTTTATTTCAT-TACAAGATT
1 TTTTTATTTCATGTACAAGATT
*
127271456 TCTTTA
1 TTTTTA
127271462 CTCCATTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.21, C:0.10, G:0.06, T:0.62
Consensus pattern (22 bp):
TTTTTATTTCATGTACAAGATT
Found at i:127273407 original size:40 final size:40
Alignment explanation
Indices: 127273305--127273471 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
127273295 AAATTGAATG
* * * * *
127273305 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
***
127273345 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* * *
127273385 ATATCCGGGCTAAGACCCGAAGG-TATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
127273425 CTATCC-GGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
127273464 ATATCCGG
1 ATATCCGG
127273472 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 33 0.31
40 71 0.68
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:127278880 original size:40 final size:40
Alignment explanation
Indices: 127278821--127278962 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
127278811 AAATTGAATG
* * *
127278821 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
127278861 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
127278901 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
127278941 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
127278963 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:127278963 original size:40 final size:39
Alignment explanation
Indices: 127278860--127278988 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
127278850 TGCTGGAAAT
* * *
127278860 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
127278900 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
127278940 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
127278980 TATATCCGG
1 TATATCCGG
127278989 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:127290221 original size:24 final size:24
Alignment explanation
Indices: 127290189--127290236 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
127290179 CAAGGTAGGT
127290189 GACCAAGTATTATTAGATGAAACC
1 GACCAAGTATTATTAGATGAAACC
127290213 GACCAAGTATTATTAGATGAAACC
1 GACCAAGTATTATTAGATGAAACC
127290237 AACCCTCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (24 bp):
GACCAAGTATTATTAGATGAAACC
Found at i:127301914 original size:16 final size:17
Alignment explanation
Indices: 127301895--127301928 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
127301885 CCCACCCCTT
127301895 CTTT-CCCTATCTTTTC
1 CTTTCCCCTATCTTTTC
*
127301911 CTTTCCCCTCTCTTTTC
1 CTTTCCCCTATCTTTTC
127301928 C
1 C
127301929 CCTTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.03, C:0.44, G:0.00, T:0.53
Consensus pattern (17 bp):
CTTTCCCCTATCTTTTC
Found at i:127303264 original size:7 final size:6
Alignment explanation
Indices: 127303227--127303282 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
127303217 TTGAGTCCGA
* * * *
127303227 TATTTT TATGTT TATGTT TATTTT TATTTT TATCTTTT TTTTTT TATGTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TA--TTTT TATTTT TATTTT
127303277 TATTTT
1 TATTTT
127303283 GTTTTCCCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
6 37 0.88
8 5 0.12
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:127311195 original size:40 final size:39
Alignment explanation
Indices: 127311150--127311279 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
127311140 CGGAATATAA
127311150 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
127311190 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
127311230 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
127311270 CCGGATATAA
1 CCGGATATAA
127311280 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:127311294 original size:40 final size:40
Alignment explanation
Indices: 127311166--127311317 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
127311156 ATAACCATGT
* * *
127311166 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
127311206 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
127311246 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
127311286 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
127311318 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:127311300 original size:80 final size:80
Alignment explanation
Indices: 127311166--127311315 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
127311156 ATAACCATGT
*
127311166 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
127311230 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
127311246 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
127311309 CCCGGAT
64 CCCGGAT
127311316 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:127319138 original size:40 final size:39
Alignment explanation
Indices: 127319093--127319220 Score: 134
Period size: 40 Copynumber: 3.3 Consensus size: 39
127319083 CGGAATATAA
127319093 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
127319133 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
127319173 CC-GATGTAGCCATAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
127319211 CCGGATATAA
1 CCGGATATAA
127319221 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
37 1 0.01
38 24 0.34
39 9 0.13
40 34 0.49
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:127319207 original size:38 final size:38
Alignment explanation
Indices: 127319109--127319213 Score: 115
Period size: 38 Copynumber: 2.7 Consensus size: 38
127319099 ATAACCATGT
* *
127319109 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCC-GATAGAATGCCTA
*
127319149 GCACGAATGCCTTCGGGTCTTAGCCCGAT-GTA-GCCATA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGATAGAATGCC-TA
*
127319187 GCACAATTGCCTTCGGGTCTTAACCCG
1 GCACAA-TGCCTTCGGGTCTTAGCCCG
127319214 GATATAATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
37 4 0.07
38 26 0.45
39 3 0.05
40 25 0.43
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.25
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGATAGAATGCCTA
Found at i:127319241 original size:78 final size:78
Alignment explanation
Indices: 127319109--127319253 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 78
127319099 ATAACCATGT
*
127319109 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
127319173 CCGATGTAGCCATA
65 CCGATGTAGCCATA
* * * * *
127319187 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
127319250 CCCG
64 CCCG
127319254 GATATCATTC
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
77 3 0.05
78 54 0.93
79 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGATGTAGCCATA
Found at i:127325709 original size:79 final size:81
Alignment explanation
Indices: 127325608--127325790 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
127325598 ACGACTCGCT
** * *
127325608 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAGACC
* *
127325670 TGGGTTTAGTAACTT-GCA
64 -GGATATAGTAACTTAGCA
* *
127325688 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAGACCGG
*
127325752 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
127325768 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
127325791 ACATCATTCG
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAGACCGG
ATATAGTAACTTAGCA
Found at i:127325733 original size:39 final size:39
Alignment explanation
Indices: 127325601--127325790 Score: 170
Period size: 40 Copynumber: 4.8 Consensus size: 39
127325591 GGATATAACG
* ** *
127325601 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* * *
127325641 ACTCGCACGAATGCCTTCGGGACTTAACCTGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCC-CGGTTTAGTA
* *
127325681 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* * * * *
127325720 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTA
*
127325760 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
127325791 ACATCATTCG
Statistics
Matches: 121, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
38 4 0.03
39 28 0.23
40 75 0.62
41 14 0.12
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:127333450 original size:40 final size:40
Alignment explanation
Indices: 127333406--127333589 Score: 291
Period size: 40 Copynumber: 4.6 Consensus size: 40
127333396 GCTACTAGCT
127333406 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
127333446 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
127333486 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
127333526 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
127333565 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
127333590 GTATCAATCC
Statistics
Matches: 134, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.25
40 100 0.75
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:127336582 original size:21 final size:20
Alignment explanation
Indices: 127336547--127336586 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
127336537 ATGTTCAAGT
127336547 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
* *
127336568 TCCACACGTGTGTGTGCCC
1 TCCACACGGGCGTGTGCCC
127336587 TATTTCAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:127338720 original size:21 final size:20
Alignment explanation
Indices: 127338691--127338732 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
127338681 TGAATTTATG
*
127338691 TAAGTATAATGATTTTGGTA
1 TAAGTATAATAATTTTGGTA
127338711 TAAGTTATAATAATTTTGGTA
1 TAAG-TATAATAATTTTGGTA
127338732 T
1 T
127338733 TCTTTGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (20 bp):
TAAGTATAATAATTTTGGTA
Found at i:127339866 original size:23 final size:23
Alignment explanation
Indices: 127339840--127339886 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
127339830 TGTAAATATG
127339840 TGATACTATTTCATACATGTTAA
1 TGATACTATTTCATACATGTTAA
127339863 TGATACTATTTCATACATGTTAA
1 TGATACTATTTCATACATGTTAA
127339886 T
1 T
127339887 AATGTTTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TGATACTATTTCATACATGTTAA
Found at i:127354595 original size:18 final size:19
Alignment explanation
Indices: 127354564--127354600 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
127354554 AGTTAGTAAT
127354564 AAAGAAATGGGAAA-AAAA
1 AAAGAAATGGGAAAGAAAA
127354582 AAAGAAA-GGAGAAAGAAAA
1 AAAGAAATGG-GAAAGAAAA
127354601 TGATGAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.12
18 11 0.65
19 4 0.24
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (19 bp):
AAAGAAATGGGAAAGAAAA
Found at i:127355943 original size:40 final size:40
Alignment explanation
Indices: 127355865--127356047 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
127355855 TCGAATGATG
* *
127355865 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
127355905 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
127355945 TCCAAGCTATG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
127355983 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
127356024 -CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
127356048 AAACGAGTAG
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:127356007 original size:78 final size:80
Alignment explanation
Indices: 127355870--127356046 Score: 227
Period size: 78 Copynumber: 2.2 Consensus size: 80
127355860 TGATGTCCGG
* *
127355870 GCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
1 GCTATGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
*
127355935 AGTTACTA-ATTCCAA
66 AGTTACTATA-ACCAA
* * **
127355950 GCTATG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 GCTATGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGC
**
127356012 GAGTTACTATAACCGG
65 GAGTTACTATAACCAA
127356028 GCTATGTCCCGAAGGCATT
1 GCTATGTCCCGAAGGCATT
127356047 TAAACGAGTA
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.60
79 28 0.33
80 5 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
GCTATGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCG
AGTTACTATAACCAA
Found at i:127363955 original size:40 final size:40
Alignment explanation
Indices: 127363898--127364081 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
127363888 TCGAATGATG
* *
127363898 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
127363938 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
127363978 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
127364016 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
127364057 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
127364082 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 19 0.15
40 74 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:127364033 original size:78 final size:80
Alignment explanation
Indices: 127363898--127364079 Score: 255
Period size: 78 Copynumber: 2.3 Consensus size: 80
127363888 TCGAATGATG
*
127363898 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
127363963 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
127363977 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
127364039 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
127364056 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
127364080 TGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.57
79 28 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:127372873 original size:26 final size:27
Alignment explanation
Indices: 127372765--127372882 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
127372755 TGGATAAGTT
*
127372765 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
127372792 GTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
127372819 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
127372846 GTAGAATTACCGAGATACCCTTGT-GG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
127372872 GTAAAATTACC
1 GTAGAATTACC
127372883 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 12 0.15
27 67 0.85
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:127373659 original size:27 final size:26
Alignment explanation
Indices: 127373621--127373680 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
127373611 ATATATATAT
* *
127373621 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATTTGTTCTGGTGACCTAGCCACA
* * *
127373647 ATATTTGTATCTGGTGACTTTGTCACA
1 ATATTTGT-TCTGGTGACCTAGCCACA
127373674 ATATTTG
1 ATATTTG
127373681 GCACCTCGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (26 bp):
ATATTTGTTCTGGTGACCTAGCCACA
Found at i:127374902 original size:35 final size:35
Alignment explanation
Indices: 127374856--127374928 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
127374846 GTCAATAGGA
127374856 TTACTTGTCCGAGCTAAATCCCACCAGCAACAAAT
1 TTACTTGTCCGAGCTAAATCCCACCAGCAACAAAT
127374891 TTACTTGTCCGAGCTAAATCCCACCAGCAACAAAT
1 TTACTTGTCCGAGCTAAATCCCACCAGCAACAAAT
127374926 TTA
1 TTA
127374929 TTCATCGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.34, C:0.30, G:0.11, T:0.25
Consensus pattern (35 bp):
TTACTTGTCCGAGCTAAATCCCACCAGCAACAAAT
Found at i:127375572 original size:20 final size:20
Alignment explanation
Indices: 127375531--127375573 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
127375521 AACACATGTA
*
127375531 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
*
127375551 TTCATCAAATTTT-GCAACTT
1 TTCATAAAATTTTAG-AACTT
127375571 TTC
1 TTC
127375574 CTGTTAGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:127379298 original size:20 final size:20
Alignment explanation
Indices: 127379273--127379310 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
127379263 GTTTATTCGC
*
127379273 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
127379293 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
127379311 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:127387225 original size:20 final size:20
Alignment explanation
Indices: 127387200--127387237 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
127387190 GTTTATTCGC
*
127387200 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
127387220 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
127387238 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:127393476 original size:14 final size:14
Alignment explanation
Indices: 127393457--127393487 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
127393447 ATTTTCTATT
*
127393457 TTTCTTTTCTTTAA
1 TTTCTTTACTTTAA
127393471 TTTCTTTACTTTAA
1 TTTCTTTACTTTAA
127393485 TTT
1 TTT
127393488 TTTCTTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTCTTTACTTTAA
Found at i:127395464 original size:2 final size:2
Alignment explanation
Indices: 127395457--127395484 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
127395447 AAACGAATCA
127395457 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
127395485 GAATGTATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:127396548 original size:20 final size:20
Alignment explanation
Indices: 127396492--127396548 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
127396482 AAGCTTATGC
*
127396492 TAAGTAAATGGAATGGAAAG
1 TAAGTAAATGGAATGGTAAG
*
127396512 TAAGTAAATTGAATGGTAAG
1 TAAGTAAATGGAATGGTAAG
*
127396532 TAAGTAAATGGAGTGGT
1 TAAGTAAATGGAATGGT
127396549 TCATAATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (20 bp):
TAAGTAAATGGAATGGTAAG
Found at i:127399010 original size:46 final size:49
Alignment explanation
Indices: 127398862--127399267 Score: 246
Period size: 48 Copynumber: 8.6 Consensus size: 49
127398852 TTCCTGCGCT
* * * *
127398862 AGTGTAAGA-CATGTCTGGAACAT-GCATCAGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTAGAGCC
* * * * * * *
127398908 AGTGTAGGACCATGTCTGGGACATGGCGTCAGCATTGAGATG-AGAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
127398956 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
* * ** *
127399002 AGTGTAAGA-CATGTCTGGGACAT-GCATTGACCAGGAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
* * * * * *
127399046 AGTGTAAGACCATTTCTAGGACATGGCATCGG-CACG-TATAG-AGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT-GTA-GAGCC
* * * *
127399094 AATGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-AGAGCC
* ** * * *
127399144 AGTGTAAGACCATGTTTGGGACATATC-TCGGCCTC-A-ATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT--AGAGCC
* * *
127399192 AGTGTAAGACCATGTCTGGGACATGGCATC-GACT--TGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA-GAGCC
* *
127399239 AGTGTAAGACCATATCTTGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
127399268 TGGTATTATA
Statistics
Matches: 285, Mismatches: 54, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
44 13 0.05
45 16 0.06
46 66 0.23
47 61 0.21
48 89 0.31
49 10 0.04
50 29 0.10
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAGAGCC
Found at i:127400832 original size:93 final size:93
Alignment explanation
Indices: 127400720--127400891 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
127400710 GCCCATAAGT
* *
127400720 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
127400785 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
127400813 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
127400878 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
127400892 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:127400887 original size:46 final size:46
Alignment explanation
Indices: 127400712--127400887 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
127400702 TGTAACCCGC
* * *
127400712 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
127400758 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
127400808 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
127400851 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
127400888 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:127403311 original size:29 final size:29
Alignment explanation
Indices: 127403272--127403359 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
127403262 CAAAGATAAC
*
127403272 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
127403301 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
127403330 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
127403360 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:127403330 original size:15 final size:15
Alignment explanation
Indices: 127403272--127403350 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
127403262 CAAAGATAAC
*
127403272 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
127403286 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
127403301 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
127403315 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
127403330 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
127403345 AAGAAA
1 AAGAAA
127403351 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:127403359 original size:15 final size:15
Alignment explanation
Indices: 127403283--127403359 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
127403273 AGAAAACCGA
127403283 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
127403298 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
127403312 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
127403326 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
127403342 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
127403357 ATA
1 ATA
127403360 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:127406421 original size:93 final size:93
Alignment explanation
Indices: 127406309--127406480 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
127406299 GCCCATAAGT
* *
127406309 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
127406374 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
127406402 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
127406467 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
127406481 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:127406476 original size:46 final size:46
Alignment explanation
Indices: 127406301--127406476 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
127406291 TGTAACCCGC
* * *
127406301 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
127406347 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
127406397 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
127406440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
127406477 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Done.