Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 415 of 770
Found at i:127715748 original size:9 final size:9
Alignment explanation
Indices: 127715652--127715749 Score: 61
Period size: 9 Copynumber: 10.2 Consensus size: 9
127715642 AACAATTTTG
127715652 AATTTTTAT
1 AATTTTTAT
127715661 GAATTTTTAT
1 -AATTTTTAT
*
127715671 AAATTTTAT
1 AATTTTTAT
* *
127715680 AAATATTGAT
1 -AATTTTTAT
***
127715690 AAACATTAT
1 AATTTTTAT
*
127715699 AAATTATTAT
1 -AATTTTTAT
127715709 AATTTTTAT
1 AATTTTTAT
**
127715718 AGGTTTTAGT
1 AATTTTTA-T
127715728 AATTTGTTTAT
1 AA-TT-TTTAT
127715739 AATTTTTAT
1 AATTTTTAT
127715748 AA
1 AA
127715750 GTTAAAAAAG
Statistics
Matches: 68, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
9 34 0.50
10 26 0.38
11 4 0.06
12 4 0.06
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (9 bp):
AATTTTTAT
Found at i:127720096 original size:42 final size:41
Alignment explanation
Indices: 127720016--127720098 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 41
127720006 GTCCCCTTAT
*
127720016 TCTAATAAACTACTAAAGCATAAAAGAAAATAGTTTCCTAAC
1 TCTAATAAACTACTAAAGCATAAAAAAAAATAG-TTCCTAAC
127720058 TCTAATAAACTACTAAAAAG-ATAAAATAAAAATA-TTCCTAA
1 TCTAATAAACTACT--AAAGCATAAAA-AAAAATAGTTCCTAA
127720099 AATATGAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 21 0.57
43 6 0.16
44 10 0.27
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (41 bp):
TCTAATAAACTACTAAAGCATAAAAAAAAATAGTTCCTAAC
Found at i:127720135 original size:19 final size:18
Alignment explanation
Indices: 127720113--127720152 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
127720103 TGAATAAAAC
127720113 TTATCTACCTAAATAATAT
1 TTATCTACCTAAATAA-AT
127720132 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
127720150 TTA
1 TTA
127720153 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:127724802 original size:42 final size:42
Alignment explanation
Indices: 127724739--127724827 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
127724729 TCCTAATTGG
* *
127724739 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
1 GAAAATAGTTCCCTAACTCTAATAAACTACTAAAACATAAAA
* * *
127724781 GAAAATAGTTTCCTAACTCTAATAAATTACTAAAAGATAAAA
1 GAAAATAGTTCCCTAACTCTAATAAACTACTAAAACATAAAA
*
127724823 TAAAA
1 GAAAA
127724828 ATATGAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (42 bp):
GAAAATAGTTCCCTAACTCTAATAAACTACTAAAACATAAAA
Found at i:127732593 original size:40 final size:40
Alignment explanation
Indices: 127732509--127732691 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
127732499 TATTCGAATG
*
127732509 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
*
127732550 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
127732590 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
127732630 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
*
127732670 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
127732692 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 15 0.11
40 93 0.69
41 26 0.19
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:127741948 original size:29 final size:29
Alignment explanation
Indices: 127741813--127741944 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
127741803 GTGACGAGAT
127741813 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
127741842 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
127741871 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
127741900 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
127741929 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
127741945 AGCTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:127741960 original size:87 final size:87
Alignment explanation
Indices: 127741812--127742001 Score: 204
Period size: 87 Copynumber: 2.2 Consensus size: 87
127741802 GGTGACGAGA
** * * * *
127741812 TTGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCAC
* *
127741877 TAAGTGTGCGTGCTGGAAA-TAT
66 TAAGTGTGCGAGCT-GAAATTAC
** * *
127741899 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGG-AGGGTATGGCA
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCT-GGAAAGATATGGCA
** *
127741963 CTGTGTGTGCGAGCTTAAATTAC
65 CTAAGTGTGCGAGCTGAAATTAC
*
127741986 GTGGCACTAAGTGTGC
1 TTGGCACTAAGTGTGC
127742002 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
86 3 0.04
87 80 0.94
88 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (87 bp):
TTGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCAC
TAAGTGTGCGAGCTGAAATTAC
Found at i:127742451 original size:20 final size:20
Alignment explanation
Indices: 127742426--127742467 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
127742416 TTTTCTTGTC
127742426 ACCCATTTTAGGTCTCTCGG
1 ACCCATTTTAGGTCTCTCGG
127742446 ACCCATTTTAGGTCTCTCGG
1 ACCCATTTTAGGTCTCTCGG
127742466 AC
1 AC
127742468 TCGTATCGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.31, G:0.19, T:0.33
Consensus pattern (20 bp):
ACCCATTTTAGGTCTCTCGG
Found at i:127750035 original size:29 final size:30
Alignment explanation
Indices: 127749950--127750038 Score: 126
Period size: 33 Copynumber: 2.9 Consensus size: 30
127749940 TGGTGACGAG
127749950 ATTGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATTGGCACTAAGTGTGCGTGCTGGAAATAT
127749980 ATATGTGCACTAAGTGCTGCGTGCTGGAAATAT
1 AT-TG-GCACTAAGTG-TGCGTGCTGGAAATAT
**
127750013 -TTGGCACTAAGTGTGCAAGCTGGAAA
1 ATTGGCACTAAGTGTGCGTGCTGGAAA
127750039 ATACGGCACT
Statistics
Matches: 54, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
29 11 0.20
30 12 0.22
31 4 0.07
32 11 0.20
33 16 0.30
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
ATTGGCACTAAGTGTGCGTGCTGGAAATAT
Found at i:127750041 original size:30 final size:30
Alignment explanation
Indices: 127749951--127750041 Score: 121
Period size: 30 Copynumber: 3.0 Consensus size: 30
127749941 GGTGACGAGA
127749951 TTGGCACTAAGTGTGCGTGCTGGAAATATAT
1 TTGGCACTAAGTGTGCGTGCTGGAAA-ATAT
*
127749982 ATGTGCACTAAGTGCTGCGTGCTGG-AAATAT
1 TTG-GCACTAAGTG-TGCGTGCTGGAAAATAT
**
127750013 TTGGCACTAAGTGTGCAAGCTGGAAAATA
1 TTGGCACTAAGTGTGCGTGCTGGAAAATA
127750042 CGGCACTGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.15
30 15 0.28
31 8 0.15
32 12 0.23
33 10 0.19
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (30 bp):
TTGGCACTAAGTGTGCGTGCTGGAAAATAT
Found at i:127753309 original size:29 final size:28
Alignment explanation
Indices: 127753255--127753342 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 28
127753245 CCCAATCTAT
127753255 TTTATATGGCCCATTAAGCACAATCACA
1 TTTATATGGCCCATTAAGCACAATCACA
* * *
127753283 TTTATGTGGCCTATTAAGCCCAAATCACA
1 TTTATATGGCCCATTAAGCAC-AATCACA
* ** * *
127753312 TTCATACAG-CCATTAGGCCCAATCACA
1 TTTATATGGCCCATTAAGCACAATCACA
127753339 TTTA
1 TTTA
127753343 CAGTTATACT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 10 0.20
28 27 0.55
29 12 0.24
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (28 bp):
TTTATATGGCCCATTAAGCACAATCACA
Found at i:127753580 original size:8 final size:8
Alignment explanation
Indices: 127753564--127753602 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
127753554 ACTTTTAGCT
127753564 TTTCGGCA
1 TTTCGGCA
*
127753572 TTTCAGCA
1 TTTCGGCA
*
127753580 TTTCGGCT
1 TTTCGGCA
127753588 TTTCGGCA
1 TTTCGGCA
127753596 TTTCGGC
1 TTTCGGC
127753603 TTTTTGAGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.10, C:0.26, G:0.23, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:127753603 original size:16 final size:16
Alignment explanation
Indices: 127753555--127753606 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
127753545 CGTAGCCAAA
*
127753555 CTTTT-AGCTTTTCGG
1 CTTTTCAGCATTTCGG
*
127753570 CATTTCAGCATTTCGG
1 CTTTTCAGCATTTCGG
*
127753586 CTTTTCGGCATTTCGG
1 CTTTTCAGCATTTCGG
127753602 CTTTT
1 CTTTT
127753607 TGAGATCTGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 4 0.12
16 28 0.88
ACGTcount: A:0.10, C:0.23, G:0.19, T:0.48
Consensus pattern (16 bp):
CTTTTCAGCATTTCGG
Found at i:127758067 original size:68 final size:65
Alignment explanation
Indices: 127757995--127758165 Score: 168
Period size: 66 Copynumber: 2.6 Consensus size: 65
127757985 CATCATGTGT
* * * *
127757995 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGAT-CCAGTGAAGGACACCA
127758058 TGTAG
61 TGTAG
** *
127758063 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTCCAGGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATCCA-GTGAAGGACACCATGTA
127758128 G
65 G
* * * *
127758129 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
127758166 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
63 2 0.02
64 22 0.25
65 18 0.20
66 34 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATCCAGTGAAGGACACCATGTAG
Found at i:127758100 original size:64 final size:64
Alignment explanation
Indices: 127758019--127758201 Score: 203
Period size: 66 Copynumber: 2.8 Consensus size: 64
127758009 AGACATTATG
* * *
127758019 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
127758083 ATGTAGCTAGGTCGCATGCGTGGT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
127758147 AA
63 AA
* * *
127758149 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
127758202 CGAACTCTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 21 0.21
64 23 0.23
65 20 0.20
66 33 0.33
67 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:127763236 original size:49 final size:49
Alignment explanation
Indices: 127763167--127763802 Score: 1097
Period size: 49 Copynumber: 13.1 Consensus size: 49
127763157 GTACATAATA
*
127763167 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127763216 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127763265 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127763314 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127763363 ATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
127763412 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127763461 ATATA--TG-T---G-CTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127763503 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* * * *
127763552 ATATATGTGATGAGGCCAAATGGCCGACATGAGGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127763601 ATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
127763650 ATATATGTGATGAGGCCAAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127763699 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127763748 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127763797 ATATAT
1 ATATAT
127763803 ATATGGTAAA
Statistics
Matches: 565, Mismatches: 15, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
42 38 0.07
43 1 0.00
44 2 0.00
45 1 0.00
46 1 0.00
47 2 0.00
48 1 0.00
49 519 0.92
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
Found at i:127763499 original size:24 final size:24
Alignment explanation
Indices: 127763430--127763499 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
127763420 GATGAGGCCT
127763430 AATGGCCGATGTGATGAATGTGAA
1 AATGGCCGATGTGATGAATGTGAA
* * **
127763454 AAT-G--TATAT-AT--ATGTGCT
1 AATGGCCGATGTGATGAATGTGAA
127763472 AATGGCCGATGTGATGAATGTGAA
1 AATGGCCGATGTGATGAATGTGAA
127763496 AATG
1 AATG
127763500 TATATATATG
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 8 0.25
19 1 0.03
20 2 0.06
21 6 0.19
22 2 0.06
23 1 0.03
24 12 0.38
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (24 bp):
AATGGCCGATGTGATGAATGTGAA
Found at i:127766410 original size:40 final size:39
Alignment explanation
Indices: 127766245--127766428 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
127766235 AAATTGAATG
* * *
127766245 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
127766285 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
127766325 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
127766365 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
127766404 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
127766429 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:127766453 original size:80 final size:81
Alignment explanation
Indices: 127766285--127766473 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
127766275 GCTGGAAATT
* * * *
127766285 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
127766350 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
127766366 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
127766429 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
127766445 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
127766474 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:127774529 original size:40 final size:39
Alignment explanation
Indices: 127774364--127774547 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
127774354 AAATTGAATG
* * *
127774364 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
127774404 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
127774444 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
127774484 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
127774523 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
127774548 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:127774572 original size:80 final size:81
Alignment explanation
Indices: 127774404--127774592 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
127774394 GCTGGAAATT
* * * *
127774404 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
127774469 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
127774485 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
127774548 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
127774564 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
127774593 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:127777207 original size:40 final size:40
Alignment explanation
Indices: 127777163--127777274 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
127777153 GAGAATTGAG
127777163 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
127777203 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
127777243 AGTGATGTATCCGGGCTAGGTCCCGAAAAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
127777275 ATCATGCTGG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:127780962 original size:49 final size:49
Alignment explanation
Indices: 127780893--127781479 Score: 1008
Period size: 49 Copynumber: 12.1 Consensus size: 49
127780883 GTACATAATA
*
127780893 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127780942 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127780991 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127781040 ATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
127781089 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127781138 ATATA--TG-T---G-CTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127781180 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127781229 ATATATGTGATAAGGCCTAATGGCCGACGTGAGGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
127781278 ATATATGTGATGAGGCCTAATGGTCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
127781327 ATATATGTGATGAGGCCAAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127781376 ATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
127781425 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
127781474 ATATAT
1 ATATAT
127781480 ATGTGGTAAA
Statistics
Matches: 516, Mismatches: 15, Indels: 14
0.95 0.03 0.03
Matches are distributed among these distances:
42 38 0.07
43 1 0.00
44 2 0.00
45 1 0.00
46 1 0.00
47 2 0.00
48 1 0.00
49 470 0.91
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
Found at i:127781176 original size:24 final size:24
Alignment explanation
Indices: 127781107--127781176 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
127781097 GATGAGGCCT
127781107 AATGGCCGATGTGATGAATGTGAA
1 AATGGCCGATGTGATGAATGTGAA
* * **
127781131 AAT-G--TATAT-AT--ATGTGCT
1 AATGGCCGATGTGATGAATGTGAA
127781149 AATGGCCGATGTGATGAATGTGAA
1 AATGGCCGATGTGATGAATGTGAA
127781173 AATG
1 AATG
127781177 TATATATATG
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 8 0.25
19 1 0.03
20 2 0.06
21 6 0.19
22 2 0.06
23 1 0.03
24 12 0.38
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (24 bp):
AATGGCCGATGTGATGAATGTGAA
Found at i:127788751 original size:68 final size:66
Alignment explanation
Indices: 127788679--127788849 Score: 177
Period size: 66 Copynumber: 2.6 Consensus size: 66
127788669 CATCATGTGT
* * * *
127788679 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACAAGTGAAGGACACCA
127788742 TGTAG
62 TGTAG
** * *
127788747 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTCCAAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAAGTGAAGGACACCATGTA
127788812 G
66 G
* * * *
127788813 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
127788850 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
64 24 0.27
65 18 0.20
66 34 0.38
68 13 0.15
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAAGTGAAGGACACCATGTA
G
Found at i:127788784 original size:64 final size:64
Alignment explanation
Indices: 127788703--127788885 Score: 210
Period size: 66 Copynumber: 2.8 Consensus size: 64
127788693 AGACATTATG
* * *
127788703 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
127788767 ATGTAGCTAGGTCGCATGCGTGGTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
127788832 A
64 A
* * *
127788833 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
127788886 CGAACTCTAT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 21 0.21
66 33 0.33
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:127793079 original size:68 final size:66
Alignment explanation
Indices: 127793007--127793178 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
127792997 CATCATGTGT
* * * *
127793007 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
127793070 TGTAG
62 TGTAG
** * *
127793075 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
127793140 AG
65 AG
* * * *
127793142 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
127793179 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:127793112 original size:64 final size:64
Alignment explanation
Indices: 127793031--127793214 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
127793021 AGACATTATG
* * *
127793031 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
127793095 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
127793160 AA
63 AA
* * *
127793162 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
127793215 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:127797414 original size:68 final size:66
Alignment explanation
Indices: 127797342--127797513 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
127797332 CATCATGTGT
* * * *
127797342 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
127797405 TGTAG
62 TGTAG
** * *
127797410 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
127797475 AG
65 AG
* * * *
127797477 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
127797514 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:127797447 original size:64 final size:64
Alignment explanation
Indices: 127797366--127797549 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
127797356 AGACATTATG
* * *
127797366 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
127797430 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
127797495 AA
63 AA
* * *
127797497 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
127797550 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:127801858 original size:63 final size:64
Alignment explanation
Indices: 127801778--127801960 Score: 203
Period size: 66 Copynumber: 2.8 Consensus size: 64
127801768 AGACATTATG
* *
127801778 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
127801841 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
127801906 AA
63 AA
* * *
127801908 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
127801961 CGAACTATAT
Statistics
Matches: 99, Mismatches: 15, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 43 0.43
64 1 0.01
65 2 0.02
66 45 0.45
67 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:127805723 original size:29 final size:28
Alignment explanation
Indices: 127805691--127805793 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
127805681 GGGACGAGAT
* *
127805691 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
127805720 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
127805749 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
127805778 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
127805794 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:127813733 original size:29 final size:28
Alignment explanation
Indices: 127813701--127813803 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
127813691 GGGACGAGAT
* *
127813701 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
127813730 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
127813759 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
127813788 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
127813804 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:127816358 original size:30 final size:30
Alignment explanation
Indices: 127816303--127816433 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
127816293 ATAGTGAATC
*
127816303 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
127816332 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
127816362 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
127816390 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
127816420 CGCACACTTAGTGC
1 CGCACACTTAGTGC
127816434 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:127816413 original size:58 final size:58
Alignment explanation
Indices: 127816302--127816433 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
127816292 TATAGTGAAT
* * * * *
127816302 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
127816361 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
127816419 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
127816434 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:127824317 original size:30 final size:30
Alignment explanation
Indices: 127824239--127824368 Score: 162
Period size: 29 Copynumber: 4.5 Consensus size: 30
127824229 ATAGTGAATC
*
127824239 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
127824268 CGCACACTTAGTG-TATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
127824297 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
127824325 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
127824355 CGCACACTTAGTGC
1 CGCACACTTAGTGC
127824369 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.02
28 27 0.30
29 36 0.40
30 24 0.27
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:127847058 original size:40 final size:40
Alignment explanation
Indices: 127846999--127847216 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
127846989 TGGATGATAA
* * * * * *
127846999 CCGGGCTAAGTCCCAAAGGCGTTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* *
127847039 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
127847079 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
127847119 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
127847159 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
127847199 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
127847217 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:127852784 original size:27 final size:26
Alignment explanation
Indices: 127852736--127852795 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
127852726 GCAAGGCAGC
*
127852736 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
127852763 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
127852789 TAGATAT
1 CAGATAT
127852796 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:127852799 original size:2 final size:2
Alignment explanation
Indices: 127852792--127852817 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
127852782 ACCAGAATAG
127852792 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
127852818 GTGGCGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:127853581 original size:27 final size:27
Alignment explanation
Indices: 127853551--127853723 Score: 184
Period size: 27 Copynumber: 6.4 Consensus size: 27
127853541 TGGGCAAAAT
* * *
127853551 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * *
127853578 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
127853605 GGTATTTCTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * *
127853632 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* *
127853659 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
** * * * *
127853686 AATAATTTTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
127853713 GGTAATTCTAC
1 GGTAATTCTAC
127853724 AACTTATCCA
Statistics
Matches: 124, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:127853641 original size:54 final size:54
Alignment explanation
Indices: 127853551--127853723 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
127853541 TGGGCAAAAT
* * *
127853551 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTC
*
127853605 GGTATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCC-TACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTCGGTAATTCTA-CCTTACAGGGGTATTTC
* * ** *
127853659 GGTAATTCTACCCTACAGGGGTATTTCAATAATTTTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTC
127853713 GGTAATTCTAC
1 GGTAATTCTAC
127853724 AACTTATCCA
Statistics
Matches: 107, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
53 2 0.02
54 103 0.96
55 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTC
Found at i:127853708 original size:81 final size:81
Alignment explanation
Indices: 127853570--127853722 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
127853560 ACCCCACAAA
* **
127853570 GGTATCTCGGTAATTCTACCTTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATCTCGGT
1 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATATTTCTACCCTACAAGGGTATCTCGGT
127853635 AATTCTATCCTACAGG
66 AATTCTATCCTACAGG
* * * *
127853651 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTT-TACCTTACAGGGGTATTTCGG
1 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAAT-ATTTCTACCCTACAAGGGTATCTCGG
127853715 TAATTCTA
65 TAATTCTA
127853723 CAACTTATCC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
81 60 0.94
82 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (81 bp):
GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATATTTCTACCCTACAAGGGTATCTCGGT
AATTCTATCCTACAGG
Found at i:127857384 original size:27 final size:27
Alignment explanation
Indices: 127857354--127857431 Score: 88
Period size: 26 Copynumber: 2.9 Consensus size: 27
127857344 CCCAATATTG
*
127857354 GTAAAATTACCGA-AATACCCTTGTAGT
1 GTAAAATGACC-ACAATACCCTTGTAGT
* * *
127857381 GTAAAATGACCATAATGCCCTGGT-GT
1 GTAAAATGACCACAATACCCTTGTAGT
*
127857407 GTAAAATGACCACAATACCCCTGTA
1 GTAAAATGACCACAATACCCTTGTA
127857432 TGGTAGAATG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 23 0.55
27 19 0.45
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCACAATACCCTTGTAGT
Found at i:127859496 original size:48 final size:46
Alignment explanation
Indices: 127859430--127859550 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
127859420 AAGCTGACAC
* * * *
127859430 CATGTCCCAGATAGGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
1 CATGTCCCAGAAATGTCTTACACTAGCTCT-CA-ATAT-GAGGCCGATG
* * *
127859478 CATGTCCCAGAAATGTCTTACACTGGCTCTCAATATGTGGCTGATG
1 CATGTCCCAGAAATGTCTTACACTAGCTCTCAATATGAGGCCGATG
* *
127859524 CATGTTCCAGACATGTCTTACACTAGC
1 CATGTCCCAGAAATGTCTTACACTAGC
127859551 ACACAAATCA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 32 0.52
47 3 0.05
48 26 0.42
49 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGAAATGTCTTACACTAGCTCTCAATATGAGGCCGATG
Found at i:127860041 original size:20 final size:18
Alignment explanation
Indices: 127860004--127860046 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
127859994 CTATAGCAAC
127860004 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
127860021 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
127860041 TTACAA
1 TCACAA
127860047 ACTTTACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 4 0.18
19 4 0.18
20 9 0.41
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:127861471 original size:48 final size:48
Alignment explanation
Indices: 127861410--127861588 Score: 252
Period size: 48 Copynumber: 3.8 Consensus size: 48
127861400 CCGTGCCAAA
* * ** *
127861410 ATGTGCCTGTGTAAGACCATGTCTAGGACATGACATCAGTGGTGACAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCAGTGACGATAT
* *
127861458 ATGTGTCTATGTAAGACCATGTCTGGGACATGGCATCAGTGACGATAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCAGTGACGATAT
* **
127861506 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATTGGTGACGATAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCAGTGACGATAT
*
127861554 ATGTGCCTGTGTAAG-CCATGTCTGGGACATGACAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGACAT
127861589 TGCGATGATA
Statistics
Matches: 119, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 19 0.16
48 100 0.84
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
ATGTGCCTATGTAAGACCATGTCTGGGACATGACATCAGTGACGATAT
Found at i:127861679 original size:48 final size:48
Alignment explanation
Indices: 127861602--127861701 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
127861592 GATGATATGT
*
127861602 GCATCGGCAATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATG
1 GCATCGGCAATGATATGTGTGCCAGTGTAAGACCATGTCGGGGACATG
* *
127861650 GCATCGGCGATGATATGTG-GATTCA-TGTAAGACCATGTCGGGGACATG
1 GCATCGGCAATGATATGTGTG--CCAGTGTAAGACCATGTCGGGGACATG
127861698 GCAT
1 GCAT
127861702 TGGTACTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
47 1 0.02
48 44 0.94
49 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
GCATCGGCAATGATATGTGTGCCAGTGTAAGACCATGTCGGGGACATG
Found at i:127861904 original size:39 final size:39
Alignment explanation
Indices: 127861858--127861936 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
127861848 AACTTGATTC
127861858 ATGATGGTAAATTTAGCATGAGTAGAAAGGAGTAAGATA
1 ATGATGGTAAATTTAGCATGAGTAGAAAGGAGTAAGATA
127861897 ATGATGGTAAATTTAGCATGAGTAGAAAGGAGTAAGATA
1 ATGATGGTAAATTTAGCATGAGTAGAAAGGAGTAAGATA
127861936 A
1 A
127861937 GCTTGATGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.03, G:0.28, T:0.25
Consensus pattern (39 bp):
ATGATGGTAAATTTAGCATGAGTAGAAAGGAGTAAGATA
Found at i:127866798 original size:43 final size:43
Alignment explanation
Indices: 127866689--127866811 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
127866679 AGCTCGTACA
* * * *
127866689 ATGCCAACGTCCTAGACGTGGTCTTATATGTAATCATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACAAATCG
**
127866732 ATGCC-ACTGTCCCAGACAAGGTCTTACATGTAAATCACAAATC-
1 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCACAAATCG
*
127866775 AGTGCCAACGTCCCAG-CGTGGTCTTACACG-AATCACA
1 A-TGCCAACGTCCCAGACGTGGTCTTACATGTAATCACA
127866812 TATCAAAATC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
41 7 0.10
42 2 0.03
43 36 0.54
44 20 0.30
45 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACAAATCG
Found at i:127869198 original size:24 final size:24
Alignment explanation
Indices: 127869170--127869216 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
127869160 CCTTATAATG
* * *
127869170 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
127869194 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
127869217 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:127869285 original size:20 final size:20
Alignment explanation
Indices: 127869260--127869318 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
127869250 TAAATATGGT
127869260 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
127869280 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
127869300 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
127869319 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:127869300 original size:11 final size:11
Alignment explanation
Indices: 127869264--127869318 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
127869254 TATGGTATGT
127869264 ATGATATGCAC
1 ATGATATGCAC
* *
127869275 ATGACATG--T
1 ATGATATGCAC
127869284 ATGATATGCAC
1 ATGATATGCAC
*
127869295 ATGATATG--T
1 ATGATATGCAC
127869304 ATGATATGCAC
1 ATGATATGCAC
127869315 ATGA
1 ATGA
127869319 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:127869396 original size:24 final size:24
Alignment explanation
Indices: 127869369--127869486 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
127869359 GAGGAAGTGA
*
127869369 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
127869393 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
127869416 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
127869440 GAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
127869463 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
127869487 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 39 0.46
24 37 0.44
25 8 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:127869423 original size:23 final size:23
Alignment explanation
Indices: 127869369--127869487 Score: 152
Period size: 24 Copynumber: 5.0 Consensus size: 23
127869359 GAGGAAGTGA
127869369 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
127869392 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
127869416 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
127869440 GAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
127869463 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
127869487 A
1 A
127869488 TGATAAAGCA
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
23 39 0.45
24 40 0.47
25 7 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:127869438 original size:47 final size:47
Alignment explanation
Indices: 127869369--127869486 Score: 159
Period size: 47 Copynumber: 2.5 Consensus size: 47
127869359 GAGGAAGTGA
127869369 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT-TGCCCCAGTTATT
** *
127869416 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTGCCCCAGTTATT
*
127869463 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
127869487 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
46 10 0.16
47 43 0.67
48 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTGCCCCAGTTATT
Found at i:127869713 original size:31 final size:31
Alignment explanation
Indices: 127869678--127869772 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
127869668 CGTTTACAGT
127869678 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
127869709 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
127869740 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
127869771 AA
1 AA
127869773 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:127877270 original size:25 final size:25
Alignment explanation
Indices: 127877242--127877289 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
127877232 CCCTTATATG
* * *
127877242 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
127877267 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
127877290 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:127877356 original size:20 final size:20
Alignment explanation
Indices: 127877331--127877387 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
127877321 ATAAATATGT
127877331 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
127877351 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
127877371 ATG--TGATATGCACATGA
1 ATGTATGATATGCACATGA
127877388 GTAATCATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 14 0.39
20 22 0.61
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:127877491 original size:24 final size:23
Alignment explanation
Indices: 127877436--127877576 Score: 189
Period size: 24 Copynumber: 6.0 Consensus size: 23
127877426 GAGGAAGTGA
127877436 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
127877459 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
127877481 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
127877505 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
127877528 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
127877552 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
127877576 A
1 A
127877577 TGATAAAGCA
Statistics
Matches: 107, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
22 30 0.28
23 25 0.23
24 42 0.39
25 10 0.09
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:127877503 original size:46 final size:46
Alignment explanation
Indices: 127877436--127877561 Score: 191
Period size: 46 Copynumber: 2.7 Consensus size: 46
127877426 GAGGAAGTGA
127877436 AAAAGGGCTTATGCCCCAGTTAT-AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTATC
*
127877482 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATC
* *
127877528 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
127877562 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
46 52 0.70
47 18 0.24
48 4 0.05
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTATC
Found at i:127877803 original size:30 final size:31
Alignment explanation
Indices: 127877765--127877856 Score: 154
Period size: 30 Copynumber: 3.1 Consensus size: 31
127877755 CGTTTACAGT
127877765 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
127877796 AAA-GCTTCGGCCCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
127877825 AAAGGCTTCGGCCCAGTATTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
127877855 AA
1 AA
127877857 TATGAAAAGG
Statistics
Matches: 58, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
29 9 0.16
30 46 0.79
31 3 0.05
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:127881348 original size:28 final size:28
Alignment explanation
Indices: 127881279--127881379 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
127881269 GACAAGATTG
* * * *
127881279 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
127881309 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
127881337 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
127881366 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
127881380 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:127884659 original size:36 final size:37
Alignment explanation
Indices: 127884612--127884681 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
127884602 CGAAGTCTTA
127884612 CCCGGACATAATC-CCACACGTAGTCATCGGGTCGTG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
127884648 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
127884682 TCACCCGGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 13 0.39
37 20 0.61
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (37 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
Found at i:127884689 original size:37 final size:35
Alignment explanation
Indices: 127884610--127884695 Score: 127
Period size: 37 Copynumber: 2.3 Consensus size: 35
127884600 TACGAAGTCT
127884610 TACCCGGACATAATCCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCCCACACGTAGTCATCGGGTC
*
127884645 GTGCCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATC-CCACACGTAGTCATCGGGTC
127884682 TCACCCGGAACATA
1 T-ACCCGG-ACATA
127884696 TTTCCAAGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 15 0.33
37 25 0.56
38 5 0.11
ACGTcount: A:0.26, C:0.34, G:0.21, T:0.20
Consensus pattern (35 bp):
TACCCGGACATAATCCCACACGTAGTCATCGGGTC
Found at i:127884835 original size:49 final size:49
Alignment explanation
Indices: 127884766--127884980 Score: 369
Period size: 49 Copynumber: 4.4 Consensus size: 49
127884756 TACCACATAT
* * *
127884766 ATATATATATACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
127884815 ATATATATACATTTTCACATTCATCACATCGGCCATGAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
127884864 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
127884913 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
127884962 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
127884981 AATTTTGATA
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
49 156 0.99
50 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:127889657 original size:80 final size:80
Alignment explanation
Indices: 127889573--127889721 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
127889563 TATGGTAACC
* * * *
127889573 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
127889637 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
127889653 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
127889718 CCGG
66 CCGG
127889722 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:127889663 original size:40 final size:38
Alignment explanation
Indices: 127889614--127889721 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
127889604 ATCACGATTT
*
127889614 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
127889654 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
127889694 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
127889722 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:127897774 original size:80 final size:80
Alignment explanation
Indices: 127897690--127897838 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
127897680 TATGGTAACC
* * * *
127897690 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
127897754 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
127897770 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
127897835 CCGG
66 CCGG
127897839 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:127897780 original size:40 final size:38
Alignment explanation
Indices: 127897731--127897838 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
127897721 ATCACGATTT
*
127897731 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
127897771 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
127897811 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
127897839 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:127902943 original size:28 final size:28
Alignment explanation
Indices: 127902860--127902944 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
127902850 AACAATCTAG
* *
127902860 CACACGTAGTAGCTTGCACTTAGTACTA
1 CACACGTAGTAGCCTACACTTAGTACTA
*
127902888 CACACGT-G-A-CCTA-AC-CA-T-CTGA
1 CACACGTAGTAGCCTACACTTAGTACT-A
*
127902910 TACACGTAGTAGCCTACACTTAGTACTA
1 CACACGTAGTAGCCTACACTTAGTACTA
127902938 CACACGT
1 CACACGT
127902945 GATCGAAGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 15 0.35
29 2 0.05
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (28 bp):
CACACGTAGTAGCCTACACTTAGTACTA
Found at i:127902943 original size:50 final size:50
Alignment explanation
Indices: 127902805--127902991 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
127902795 ACCGAAGCTC
* * * *
127902805 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACATGACTTAACAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
127902855 TCT-AGCACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
127902905 TCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGCAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* * * * * * *
127902956 CCGGGTACGCATAGTAGCCTGCAATTAGAACTACAC
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
127902992 TGCACTTAGT
Statistics
Matches: 113, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 82 0.73
51 31 0.27
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (50 bp):
TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:127903000 original size:17 final size:17
Alignment explanation
Indices: 127902974--127903008 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
127902964 GCATAGTAGC
127902974 CTGCAATTAGAACTACA
1 CTGCAATTAGAACTACA
* *
127902991 CTGCACTTAGTACTACA
1 CTGCAATTAGAACTACA
127903008 C
1 C
127903009 ATGCGACCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (17 bp):
CTGCAATTAGAACTACA
Found at i:127903044 original size:67 final size:68
Alignment explanation
Indices: 127902926--127903058 Score: 169
Period size: 67 Copynumber: 2.0 Consensus size: 68
127902916 TAGTAGCCTA
* * *
127902926 CACTTAGTACTACACACGTGATCGAAGCAACCGGGTACGCATAGTAGCCTGCAATTAGAACTACA
1 CACTTAGTACTACACACGCGACCGAAGCAACCGGGTACACATAGTAGCCTGCAATTAGAACTACA
127902991 CTG
66 CTG
* * * * * * *
127902994 CACTTAGTACTACACATGCGACCTAA-CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACA
1 CACTTAGTACTACACACGCGACCGAAGCAACCGGGTACACATAGTAGCCTGCAATTAGAACTACA
127903058 C
66 C
127903059 ACGTGACTTA
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
67 33 0.60
68 22 0.40
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (68 bp):
CACTTAGTACTACACACGCGACCGAAGCAACCGGGTACACATAGTAGCCTGCAATTAGAACTACA
CTG
Found at i:127912441 original size:216 final size:216
Alignment explanation
Indices: 127912063--127912500 Score: 745
Period size: 216 Copynumber: 2.0 Consensus size: 216
127912053 AAGTGACATG
*
127912063 TCAC-TAGGATGGTTGAGTTCCGAACTCGTTGAGTTGAGTTCAAGTACGTGAGATGTAACTAGGC
1 TCACTTAGGATGGTTGAGTTCCGAACTCGTTGAGTTGAGTCCAAGTACGTGAGATGTAACTAGGC
* * *
127912127 ATCTGAACTCATTGAGTTGAGTCCGAGTTTGCTTATGGATGCGAACGCCCATGCTTGTTGAGTTG
66 ATCCGAACTCATTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCATGCTCGTTGAGTTG
127912192 AGTCCGAGTTCATTTATGGGCGGGTTACATGGTAGCTTGGCTACATAGGTTTCAAAAGCTATTGA
131 AGTCCGAGTTCATTTATGGGCGGGTTACATGGTAGCTTGGCTACATAGGTTTCAAAAGCTATTGA
127912257 GCTTGTTTAGCCATGAGTATA
196 GCTTGTTTAGCCATGAGTATA
* * **
127912278 TCACTTAGGATGGTTGAGTTCTGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGC
1 TCACTTAGGATGGTTGAGTTCCGAACTCGTTGAGTTGAGTCCAAGTACGTGAGATGTAACTAGGC
* * *
127912343 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAATGCCTGA-GCTCGTTGAGTT
66 ATCCGAACTCATTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCC-CATGCTCGTTGAGTT
127912407 GAGTCCGAGTTCATTTATGGGCGGGTTACATGGTAGCTTGGCTACATAGGTTTCAAAAGCTATTG
130 GAGTCCGAGTTCATTTATGGGCGGGTTACATGGTAGCTTGGCTACATAGGTTTCAAAAGCTATTG
*
127912472 AGCTTGTTTAGCTATGAGTATA
195 AGCTTGTTTAGCCATGAGTATA
127912494 TCACTTA
1 TCACTTA
127912501 TGTGCACATT
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
215 4 0.02
216 204 0.98
217 1 0.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (216 bp):
TCACTTAGGATGGTTGAGTTCCGAACTCGTTGAGTTGAGTCCAAGTACGTGAGATGTAACTAGGC
ATCCGAACTCATTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCATGCTCGTTGAGTTG
AGTCCGAGTTCATTTATGGGCGGGTTACATGGTAGCTTGGCTACATAGGTTTCAAAAGCTATTGA
GCTTGTTTAGCCATGAGTATA
Found at i:127917092 original size:40 final size:38
Alignment explanation
Indices: 127916923--127917094 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
127916913 TGAGAAATTG
* *
127916923 AATG-ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
127916962 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
127916999 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
127917039 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
127917079 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
127917095 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 20 0.18
40 82 0.75
41 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:127921697 original size:40 final size:40
Alignment explanation
Indices: 127921640--127921920 Score: 510
Period size: 40 Copynumber: 7.0 Consensus size: 40
127921630 CGAATACACG
* * *
127921640 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
127921680 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
127921720 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
127921760 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
127921800 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
127921840 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
127921880 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
127921919 TC
1 TC
127921921 GTCGAGACTT
Statistics
Matches: 234, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 4 0.02
40 230 0.98
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:127924283 original size:47 final size:47
Alignment explanation
Indices: 127924220--127924372 Score: 234
Period size: 47 Copynumber: 3.2 Consensus size: 47
127924210 CCCTTCGGGA
* * *
127924220 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
127924267 CCTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
127924314 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
127924363 CTTATCACAT
1 CTTATCACAT
127924373 CGGCCATTAG
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 51 0.53
49 45 0.47
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:127924373 original size:22 final size:22
Alignment explanation
Indices: 127924345--127924394 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
127924335 TTCACATTCT
127924345 TCACATCGGCCATTAGGCCTTA
1 TCACATCGGCCATTAGGCCTTA
127924367 TCACATCGGCCATTAGGCCTTA
1 TCACATCGGCCATTAGGCCTTA
127924389 TCACAT
1 TCACAT
127924395 TTATATACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (22 bp):
TCACATCGGCCATTAGGCCTTA
Found at i:127924375 original size:71 final size:71
Alignment explanation
Indices: 127924295--127924443 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
127924285 CTTCACATTC
127924295 ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTA
1 ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTA
127924360 GGCCTT
66 GGCCTT
127924366 ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTA
1 ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTA
127924431 GGCCTT
66 GGCCTT
127924437 ATCACAT
1 ATCACAT
127924444 ATATACACAC
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.34
Consensus pattern (71 bp):
ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTA
GGCCTT
Found at i:127924420 original size:49 final size:49
Alignment explanation
Indices: 127924366--127924595 Score: 406
Period size: 49 Copynumber: 4.7 Consensus size: 49
127924356 ATTAGGCCTT
*
127924366 ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
* *
127924415 TTCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
127924464 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
*
127924513 ATCACATCGGCCATTAGGCCTTATCACATATATTTACACTTTCACATTC
1 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
* *
127924562 ATCACATTGGCCATTAGGCCGTATCACATATATA
1 ATCACATCGGCCATTAGGCCTTATCACATATATA
127924596 CATCTCATAC
Statistics
Matches: 172, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 172 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTC
Found at i:127924459 original size:120 final size:118
Alignment explanation
Indices: 127924248--127924492 Score: 400
Period size: 120 Copynumber: 2.1 Consensus size: 118
127924238 TTTCACATTC
* *
127924248 ATCACATTGGCCATTCGGCCCTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG
1 ATCACATCGGCCATTAGGCCCTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG
* * *
127924313 CCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGCCTT
66 CCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* * *
127924366 ATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTA
1 ATCACATCGGCCATTAGGCCCTATCACA--TATATACACCTTCACATTCATCACATCGGCCATTA
127924431 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
64 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
127924486 ATCACAT
1 ATCACAT
127924493 ATATATACAC
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
118 25 0.21
120 92 0.79
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (118 bp):
ATCACATCGGCCATTAGGCCCTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:127924500 original size:169 final size:165
Alignment explanation
Indices: 127924220--127924541 Score: 554
Period size: 169 Copynumber: 1.9 Consensus size: 165
127924210 CCCTTCGGGA
* *
127924220 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
* *
127924285 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCTTCACA
66 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
127924350 TCGGCCATTAGGCCTTATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATCGGCCATTAGGC
* *
127924385 CTTATCACATTTATATACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-TT-TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
127924450 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 AC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
127924515 CACATCGGCCATTAGGCCTTATCACAT
127 CACATCGGCCATTAGGCCTTATCACAT
127924542 ATATTTACAC
Statistics
Matches: 147, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
165 9 0.06
166 2 0.01
167 50 0.34
168 1 0.01
169 85 0.58
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (165 bp):
CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATCGGCCATTAGGC
Found at i:127927740 original size:47 final size:47
Alignment explanation
Indices: 127927676--127927791 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
127927666 CCTATAAGTG
* * *
127927676 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACA
1 AACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATATCACA
*
127927723 AACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATATCACG
1 AACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATATCACA
127927770 AACTCAGACTCAACTCAACGAG
1 AACTCAGACTCAACTCAACGAG
127927792 CTTGGAACTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.22
Consensus pattern (47 bp):
AACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACATATCACA
Found at i:127930828 original size:50 final size:50
Alignment explanation
Indices: 127930763--127931051 Score: 268
Period size: 50 Copynumber: 5.8 Consensus size: 50
127930753 ACCGAAGCTC
*
127930763 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * ** *
127930813 TCTGGTACACGTAGTAGCCTACACTT--TACTACACACATGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * *
127930861 TCTGATACACATAGTAGCCTGCAC-T--TACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
** ** *
127930909 TCAAGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * ** *
127930959 TCTAGTACACGTAGTAGCCTGCACTTTGTACTACACACATGACATAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
127931008 -CTGTCTTAAACACTTAGTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
127931052 TTCTCACAAC
Statistics
Matches: 192, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
47 16 0.08
48 63 0.33
49 3 0.02
50 64 0.33
51 16 0.08
52 30 0.16
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:127934592 original size:18 final size:20
Alignment explanation
Indices: 127934559--127934608 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
127934549 GAATTAAATA
*
127934559 ATAAAGAAACAACCC-AAACC
1 ATAAACAAA-AACCCAAAACC
127934579 ATAAA-AAAAACCCAAAACC
1 ATAAACAAAAACCCAAAACC
*
127934598 GTAAACAAAAA
1 ATAAACAAAAA
127934609 ATATGGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 5 0.19
19 12 0.44
20 10 0.37
ACGTcount: A:0.66, C:0.24, G:0.04, T:0.06
Consensus pattern (20 bp):
ATAAACAAAAACCCAAAACC
Found at i:127940975 original size:21 final size:20
Alignment explanation
Indices: 127940930--127940967 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
127940920 GAATTAAATA
* *
127940930 ATAAAGAAACAACCCAAACC
1 ATAAAAAAAAAACCCAAACC
127940950 ATAAAAAAAAAACCCAAA
1 ATAAAAAAAAAACCCAAA
127940968 ACCGTAAACG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.24, G:0.03, T:0.05
Consensus pattern (20 bp):
ATAAAAAAAAAACCCAAACC
Found at i:127940981 original size:21 final size:19
Alignment explanation
Indices: 127940930--127940982 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
127940920 GAATTAAATA
127940930 ATAAAGAAACAACCCAAACC
1 ATAAAGAAA-AACCCAAACC
*
127940950 ATAAAAAAAAAACCCAAAACC
1 AT-AAAGAAAAACCC-AAACC
*
127940971 GTAAACGAAAAA
1 ATAAA-GAAAAA
127940983 TATGGAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.66, C:0.23, G:0.06, T:0.06
Consensus pattern (19 bp):
ATAAAGAAAAACCCAAACC
Found at i:127944751 original size:29 final size:29
Alignment explanation
Indices: 127944645--127944806 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
127944635 GTGTCGAGAT
*
127944645 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
127944674 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
127944703 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
127944732 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
127944761 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
127944788 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
127944807 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:127952764 original size:29 final size:29
Alignment explanation
Indices: 127952731--127952813 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
127952721 GTGTCGAGAT
127952731 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
127952760 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
127952789 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
127952814 AAATACGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:127968824 original size:27 final size:28
Alignment explanation
Indices: 127968768--127968837 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
127968758 AAATTTGTAC
127968768 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
127968796 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
127968823 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
127968838 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:127968848 original size:27 final size:27
Alignment explanation
Indices: 127968768--127968849 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
127968758 AAATTTGTAC
* *
127968768 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
127968796 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
127968823 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
127968850 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:127972222 original size:91 final size:92
Alignment explanation
Indices: 127972021--127972222 Score: 282
Period size: 91 Copynumber: 2.2 Consensus size: 92
127972011 AGCGAACTCA
* *
127972021 GACTCAACTCAACGAGCTCAGG-TGTTCGCAACCATAAGTGAACTCGGACTCAACTCAACAAGCT
1 GACTCAACTCAACGAGTTC-GGACG-TCGCAACCATAAGTGAACTCGGACTCAACTCAACAAGCT
*
127972085 CAGATGCCTAGTTACATCTCACGAAGTCG
64 CAGATGCCTAGTTACATCTCACGAAATCG
* * * **
127972114 GACTCAACTCAATGAGTTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTC-ACGAGCTTG
1 GACTCAACTCAACGAGTTCGGACGTCGCAACCATAAGTGAACTCGGACTCAACTCAACAAGCTCA
*
127972178 GATGCCTAGTTACATTTCACGAAATCG
66 GATGCCTAGTTACATCTCACGAAATCG
*
127972205 GACTCAACTCAGCGAGTT
1 GACTCAACTCAACGAGTT
127972223 TAGATGCCCA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
91 47 0.48
92 32 0.33
93 18 0.19
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (92 bp):
GACTCAACTCAACGAGTTCGGACGTCGCAACCATAAGTGAACTCGGACTCAACTCAACAAGCTCA
GATGCCTAGTTACATCTCACGAAATCG
Found at i:127978171 original size:46 final size:46
Alignment explanation
Indices: 127978118--127978293 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
127978108 TATTTGGGCA
* *
127978118 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
127978164 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* * *
127978211 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * * *
127978257 CCCGAGCTTGTCGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
127978294 GCAGGTTATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:127978273 original size:93 final size:93
Alignment explanation
Indices: 127978114--127978286 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
127978104 AGGATATTTG
* * * * *
127978114 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTCGAG
127978179 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
** * *
127978207 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCGAGCTTGTCGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTCGAG
127978272 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
127978287 CTTATGGGCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTCGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:127981666 original size:29 final size:29
Alignment explanation
Indices: 127981633--127981734 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
127981623 TGACGAGATC
127981633 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
127981662 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
127981691 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
127981720 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
127981735 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:127986626 original size:15 final size:15
Alignment explanation
Indices: 127986594--127986622 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
127986584 ATTTTCTATG
127986594 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
127986609 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
127986623 ATTTTTGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:127993463 original size:29 final size:29
Alignment explanation
Indices: 127993404--127993464 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
127993394 ATTTATTTTA
*
127993404 CAATTTAACCCCTCAATTTACACTTTTCT
1 CAATTTAACCCCTCAATATACACTTTTCT
* * *
127993433 CAATTTAATCCCT-AATATGCATTTTTACT
1 CAATTTAACCCCTCAATATACACTTTT-CT
127993462 CAA
1 CAA
127993465 AATCACTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.31, C:0.26, G:0.02, T:0.41
Consensus pattern (29 bp):
CAATTTAACCCCTCAATATACACTTTTCT
Found at i:127996014 original size:28 final size:27
Alignment explanation
Indices: 127995951--127996020 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
127995941 ATAGTGAGTC
127995951 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
127995978 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
127996006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
127996021 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:128003909 original size:27 final size:28
Alignment explanation
Indices: 128003865--128003933 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
128003855 ATAGTGAGTC
128003865 CGCACAC-TAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
128003891 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
128003919 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
128003934 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.17
27 14 0.35
28 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:128007900 original size:40 final size:40
Alignment explanation
Indices: 128007855--128008021 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
128007845 CGGAATATAA
128007855 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
128007895 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
128007935 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
128007975 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
128008014 CCGGATAT
1 CCGGATAT
128008022 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:128008005 original size:80 final size:79
Alignment explanation
Indices: 128007871--128008021 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
128007861 ATAATCACGT
*
128007871 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
128007936 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
128007951 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
128008014 CCGGATAT
64 CCGGATAT
128008022 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:128008860 original size:17 final size:19
Alignment explanation
Indices: 128008837--128008882 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
128008827 AAGAAGCATG
128008837 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
128008855 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
128008873 AATCATGCTC
1 AATCATGCTC
128008883 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:128015876 original size:40 final size:41
Alignment explanation
Indices: 128015831--128015997 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
128015821 CGGAATATAA
*
128015831 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
128015871 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
128015911 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
128015951 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
128015990 CCGGATAT
1 CCGGATAT
128015998 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:128016846 original size:17 final size:19
Alignment explanation
Indices: 128016823--128016868 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
128016813 AAGAAGCATG
128016823 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
128016841 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
128016859 AATCATGCTC
1 AATCATGCTC
128016869 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:128023093 original size:27 final size:26
Alignment explanation
Indices: 128023056--128023167 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
128023046 AGCATGGCTG
* *
128023056 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
128023082 CCAGATACAGATAATCGCGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
128023110 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
128023137 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
128023164 CCAG
1 CCAG
128023168 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:128024601 original size:24 final size:24
Alignment explanation
Indices: 128024574--128024644 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
128024564 CCTAGATTCC
** *
128024574 TCCCTTATCTGCTCCTAAATCTTA
1 TCCCTTATCAACTCCTAAATCCTA
128024598 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
128024622 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
128024645 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:128030911 original size:27 final size:26
Alignment explanation
Indices: 128030875--128030987 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
128030865 CAGCATGGCT
* *
128030875 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
* *
128030901 ACCAGATACAGATAATCGTGGCAAAACC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
128030929 ACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
128030956 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
128030983 ACCAG
1 ACCAG
128030988 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 51 0.70
28 15 0.21
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:128030934 original size:54 final size:54
Alignment explanation
Indices: 128030875--128030987 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
128030865 CAGCATGGCT
*
128030875 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAAACC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAAAACC
* * * * *
128030929 ACCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAACC
128030983 ACCAG
1 ACCAG
128030988 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAACC
Found at i:128033363 original size:40 final size:40
Alignment explanation
Indices: 128033278--128033428 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
128033268 AATTGAATGA
* * *
128033278 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
128033318 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
128033359 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
128033398 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
128033429 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:128033442 original size:40 final size:40
Alignment explanation
Indices: 128033314--128033444 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
128033304 TATGCTGGAA
* * *
128033314 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
128033354 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
128033394 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
128033434 ATTATATCCGG
1 ATTATATCCGG
128033445 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:128037323 original size:40 final size:40
Alignment explanation
Indices: 128037268--128037477 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
128037258 GAACATTGAA
128037268 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
128037308 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
128037348 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
128037388 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
128037427 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
128037468 CTATATCCGG
1 ATATATCCGG
128037478 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:128044674 original size:40 final size:40
Alignment explanation
Indices: 128044589--128044739 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
128044579 AATTGAATGA
* * *
128044589 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
128044629 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
128044670 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
128044709 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
128044740 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:128044753 original size:40 final size:40
Alignment explanation
Indices: 128044625--128044755 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
128044615 TATGCTGGAA
* * *
128044625 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
128044665 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
128044705 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
128044745 ATTATATCCGG
1 ATTATATCCGG
128044756 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:128046957 original size:24 final size:24
Alignment explanation
Indices: 128046930--128046976 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
128046920 CTAGATTTCC
**
128046930 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
128046954 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
128046977 CTCCTGATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:128051191 original size:39 final size:39
Alignment explanation
Indices: 128051027--128051209 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 39
128051017 TCGAATGATG
* * * *
128051027 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* *
128051067 TCCGGACTAAGAT-CCGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATT-GTGCGAGTTACTAAA
*
128051107 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
*
128051147 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
*
128051187 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
128051210 TGAACGAGTA
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
39 37 0.29
40 84 0.66
41 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:128051218 original size:79 final size:80
Alignment explanation
Indices: 128051027--128051244 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 80
128051017 TCGAATGATG
* * **
128051027 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
*
128051091 CGTGTGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
128051107 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
128051170 T-GTGCGAGTTACTATAA
64 TCGTGCGAGTTACTA-AA
* **
128051187 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
128051245 TACGTGATTC
Statistics
Matches: 118, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
78 16 0.14
79 46 0.39
80 48 0.41
81 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:128059217 original size:28 final size:28
Alignment explanation
Indices: 128059154--128059222 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
128059144 TTTAAAACCC
* *
128059154 TAGGGGT-ATATCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
128059181 TAAGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
128059209 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
128059223 TGATCTACGC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 6 0.16
28 31 0.84
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:128061529 original size:29 final size:29
Alignment explanation
Indices: 128061497--128061574 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
128061487 ATACCCTCCG
** *
128061497 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
128061526 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
128061555 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
128061575 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:128076893 original size:40 final size:40
Alignment explanation
Indices: 128076838--128077005 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
128076828 TGAATGATAC
* *
128076838 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
128076878 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
128076918 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
128076958 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
128076998 CC-GGCTAA
1 CCGGGCTAA
128077006 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:128084874 original size:40 final size:40
Alignment explanation
Indices: 128084819--128084986 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
128084809 TGAATGATAC
* *
128084819 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
128084859 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
128084899 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
128084939 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
128084979 CC-GGCTAA
1 CCGGGCTAA
128084987 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Done.