Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 416 of 770
Found at i:128088435 original size:35 final size:35
Alignment explanation
Indices: 128088387--128088545 Score: 192
Period size: 35 Copynumber: 4.5 Consensus size: 35
128088377 GTATGTACAT
128088387 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
128088422 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
128088457 ATGTGATGTTATATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
128088492 ATGTGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
128088527 ATGTGAAGATATAATGAAC
1 ATGTGATGATATATTGAAC
128088546 CTTGAGTATT
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 103 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:128097470 original size:29 final size:29
Alignment explanation
Indices: 128097378--128097509 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
128097368 AATACTATTT
** * *
128097378 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
128097407 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
128097436 CACACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
128097465 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
128097494 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
128097510 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:128099306 original size:35 final size:35
Alignment explanation
Indices: 128099266--128099423 Score: 183
Period size: 35 Copynumber: 4.5 Consensus size: 35
128099256 GTATGTACAT
128099266 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
128099301 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
128099336 ATGTGATGTTATATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * *
128099371 ATATGATGATATATTG-TCTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
128099405 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
128099424 CTTGAGTATT
Statistics
Matches: 101, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
34 29 0.29
35 72 0.71
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:128099397 original size:34 final size:35
Alignment explanation
Indices: 128099263--128099441 Score: 137
Period size: 35 Copynumber: 5.1 Consensus size: 35
128099253 TAGGTATGTA
* * *
128099263 CATATGTGATGATATATTGAACTTGTATATTTGGC
1 CATATATGATGATATATTGAGCTTGTATATTCGGC
* * * * * * * *
128099298 CACATGTGATGTTATATTAAACTTGAATATTTGAC
1 CATATATGATGATATATTGAGCTTGTATATTCGGC
* * * * *
128099333 TACATGTGATGTTATATTGAGCTTGTATATTCGGT
1 CATATATGATGATATATTGAGCTTGTATATTCGGC
* *
128099368 CATATATGATGATATATTG-TCTTGTATATTTGGC
1 CATATATGATGATATATTGAGCTTGTATATTCGGC
* * *
128099402 CATATGTGATGATATAATGAACCTTG-AGTATTCGGC
1 CATATATGATGATATATTG-AGCTTGTA-TATTCGGC
128099438 CATA
1 CATA
128099442 CAAGTAAGTA
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
34 29 0.25
35 74 0.63
36 15 0.13
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (35 bp):
CATATATGATGATATATTGAGCTTGTATATTCGGC
Found at i:128101858 original size:15 final size:15
Alignment explanation
Indices: 128101838--128101868 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
128101828 TCAGTTATCG
*
128101838 TGTTTTTGATCTACA
1 TGTTTTTGAGCTACA
128101853 TGTTTTTGAGCTACA
1 TGTTTTTGAGCTACA
128101868 T
1 T
128101869 ATTTGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (15 bp):
TGTTTTTGAGCTACA
Found at i:128102714 original size:13 final size:13
Alignment explanation
Indices: 128102679--128102705 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
128102669 TTGGACTCTT
128102679 AGAAAATTTTTGA
1 AGAAAATTTTTGA
128102692 AGAAAATTTTTGA
1 AGAAAATTTTTGA
128102705 A
1 A
128102706 TAAACTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (13 bp):
AGAAAATTTTTGA
Found at i:128104468 original size:20 final size:20
Alignment explanation
Indices: 128104445--128104484 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
128104435 AAAAAGAAAG
128104445 AAGAAAATAAAAAAAATAGT
1 AAGAAAATAAAAAAAATAGT
128104465 AAGAAAATAAAAAAAATAGT
1 AAGAAAATAAAAAAAATAGT
128104485 GAGGGAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAAAATAGT
Found at i:128105524 original size:57 final size:57
Alignment explanation
Indices: 128105436--128105548 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
128105426 GGGAAAATCG
128105436 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAAA
1 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAAA
* * *
128105493 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAATTTGGGTCGAACCACTTTAAA
1 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAA
128105549 TTTCTGTGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (57 bp):
TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAAA
Found at i:128105571 original size:30 final size:30
Alignment explanation
Indices: 128105535--128105592 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
128105525 CAATTTGGGT
128105535 CGAACCACTTTAAATTTCTGTGTCAAATGC
1 CGAACCACTTTAAATTTCTGTGTCAAATGC
128105565 CGAACCACTTTAAATTTCTGTGTCAAAT
1 CGAACCACTTTAAATTTCTGTGTCAAAT
128105593 TTTTCTATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (30 bp):
CGAACCACTTTAAATTTCTGTGTCAAATGC
Found at i:128106654 original size:31 final size:31
Alignment explanation
Indices: 128106619--128106681 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
128106609 AAGAGAATGG
128106619 TCTACTAAGAGAGAAGAAATTGCACAAACTA
1 TCTACTAAGAGAGAAGAAATTGCACAAACTA
*
128106650 TCTACTAAGAGAGAGGAAATTGCACAAACTA
1 TCTACTAAGAGAGAAGAAATTGCACAAACTA
128106681 T
1 T
128106682 GTGGACTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.21
Consensus pattern (31 bp):
TCTACTAAGAGAGAAGAAATTGCACAAACTA
Found at i:128110375 original size:27 final size:26
Alignment explanation
Indices: 128110337--128110388 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
128110327 CTCACTGTAA
*
128110337 TCTGGTGGCTTCACCACATATATCTGT
1 TCTGGTGACTTCACCACA-ATATCTGT
**
128110364 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCACCACAATATCTG
128110389 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCACCACAATATCTGT
Found at i:128115552 original size:28 final size:28
Alignment explanation
Indices: 128115515--128115572 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
128115505 AACTAGTCGA
128115515 ACTAGGTCTGATATGTGGAACCAAATCG
1 ACTAGGTCTGATATGTGGAACCAAATCG
128115543 ACTAGGTCTGATATGTGGAACCAAATCG
1 ACTAGGTCTGATATGTGGAACCAAATCG
128115571 AC
1 AC
128115573 GGTCCTATCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (28 bp):
ACTAGGTCTGATATGTGGAACCAAATCG
Found at i:128115901 original size:67 final size:64
Alignment explanation
Indices: 128115826--128116019 Score: 195
Period size: 67 Copynumber: 3.0 Consensus size: 64
128115816 TATTTTAATA
*
128115826 GATTTAATATTAAATTAAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAAAGTG
1 GATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTT-ATATTAAAGTG
* *
128115891 GTTATTTAATATTTAATTTAACTTAATATTTATCTTG-TAGATAAATATTCTATTAATTTA-A-T
1 G--ATTTAATATTAAATTTAATTTAATATTTATCTTGATAG-T--AT-TT-TATTAATTTATATT
128115953 -AA---
59 AAAGTG
* * * *
128115955 GATTTAATATTAAATTTAATCTAATATTTATCTAGATAAGTATTATAATAATTTATATTAAAGTG
1 GATTTAATATTAAATTTAATTTAATATTTATCTTGAT-AGTATTTTATTAATTTATATTAAAGTG
128116020 AATAAGTTTA
Statistics
Matches: 105, Mismatches: 9, Indels: 30
0.73 0.06 0.21
Matches are distributed among these distances:
59 9 0.09
60 2 0.02
61 3 0.03
62 32 0.30
63 2 0.02
64 3 0.03
65 1 0.01
66 3 0.03
67 34 0.32
68 1 0.01
69 3 0.03
70 3 0.03
71 9 0.09
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
GATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTATATTAAAGTG
Found at i:128116179 original size:26 final size:26
Alignment explanation
Indices: 128116150--128116201 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
128116140 TTATTTCAGA
128116150 AGATTTCTAGAGATTTTTTTCTTATT
1 AGATTTCTAGAGATTTTTTTCTTATT
128116176 AGATTTCTAGAGATTTTTTTCTTATT
1 AGATTTCTAGAGATTTTTTTCTTATT
128116202 TACAACTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.58
Consensus pattern (26 bp):
AGATTTCTAGAGATTTTTTTCTTATT
Found at i:128120953 original size:16 final size:16
Alignment explanation
Indices: 128120934--128120968 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
128120924 AACCTAACCC
*
128120934 AAAAAAAA-ACAAAGA
1 AAAAAAAAGAAAAAGA
128120949 AAAAAAAAGAAAAAGA
1 AAAAAAAAGAAAAAGA
128120965 AAAA
1 AAAA
128120969 CTTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAGA
Found at i:128120983 original size:16 final size:17
Alignment explanation
Indices: 128120964--128121001 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
128120954 AAAGAAAAAG
*
128120964 AAAAACTTA-CCCCAAA
1 AAAAACTAACCCCCAAA
*
128120980 AAAACCTAACCCCCAAA
1 AAAAACTAACCCCCAAA
128120997 AAAAA
1 AAAAA
128121002 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAACTAACCCCCAAA
Found at i:128123553 original size:12 final size:12
Alignment explanation
Indices: 128123533--128123568 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
128123523 ATTCATTTAA
128123533 CATTCATGCATT
1 CATTCATGCATT
*
128123545 CATTTATGCATT
1 CATTCATGCATT
*
128123557 CATTCATTCATT
1 CATTCATGCATT
128123569 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:128128048 original size:195 final size:195
Alignment explanation
Indices: 128127716--128128105 Score: 762
Period size: 195 Copynumber: 2.0 Consensus size: 195
128127706 GCAATCCTGG
128127716 TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
1 TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
128127781 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
66 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
128127846 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
131 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
*
128127911 TATCACCAGACGGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
1 TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
128127976 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
66 TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
*
128128041 GGTGTACGGGGATTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
131 GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
128128106 AATTGATTAA
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
195 193 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (195 bp):
TATCACCAGACAGGAATCATTATCCGTTTACTGCAAGACTGAACTTCTTCTGTACCAATAATATC
TCAGAATATGAGGCCTGTATCATCGGGCTTCGTGCAGCTATCGAACGAAACATCAAGATCTTGGA
GGTGTACGGGGACTCAGCCCTAGTGATTTACCAAATCCGTGGAGAATGAGAAGTGAGGGACTTAA
Found at i:128130759 original size:70 final size:69
Alignment explanation
Indices: 128130640--128131342 Score: 448
Period size: 70 Copynumber: 10.1 Consensus size: 69
128130630 GAGTTAAGCC
*
128130640 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
128130704 TGAGGTA
63 TGAGGTA
* * ** * *
128130711 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
128130776 AGGTA
65 AGGTA
* *
128130781 TTTTTAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
128130845 GAGGTA
64 GAGGTA
* * * ** * * *
128130851 TTTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTT
1 -TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
128130907 A---A
65 AGGTA
*** ** *
128130909 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
128130970 GGTA
66 GGTA
* * *
128130974 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
128131039 TGAGGTA
63 TGAGGTA
* * ** * * * * ** * *** * * * *
128131046 TTTTCAATTTCTGTTTTCAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGTAGGT
1 TTTTCAATTTTTGTTTTAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CG-GGGCACGC
***
128131107 TGA-ACC
63 TGAGGTA
* *
128131113 TTTT-AATTTCTACT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTT-T--TGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
128131176 GCTGAGGTA
61 GCTGAGGTA
* * * *
128131185 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAATTTTTGTT-T----TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
128131250 GCTGAGGTA
61 GCTGAGGTA
* * * **
128131259 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCAC
*
128131324 GCCGAGGTA
61 GCTGAGGTA
128131333 TTTTCAATTT
1 TTTTCAATTT
128131343 CTTTTTCAAT
Statistics
Matches: 476, Mismatches: 106, Indels: 98
0.70 0.16 0.14
Matches are distributed among these distances:
53 31 0.07
57 8 0.02
58 1 0.00
61 2 0.00
62 2 0.00
65 5 0.01
66 14 0.03
67 9 0.02
68 16 0.03
69 11 0.02
70 141 0.30
71 29 0.06
72 111 0.23
73 15 0.03
74 73 0.15
75 4 0.01
76 4 0.01
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:128130934 original size:263 final size:256
Alignment explanation
Indices: 128130473--128131065 Score: 1033
Period size: 263 Copynumber: 2.3 Consensus size: 256
128130463 TTTCAAGGAA
128130473 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT-TTGT
128130538 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
65 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
128130603 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
130 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
128130668 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
195 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
128130730 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
*
128130795 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTTAGT
66 TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA----TT--T
128130860 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
125 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
128130925 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
189 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
128130990 TTT
254 TTT
* * * * *
128130993 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
128131058 GTTTTCAA
63 GTTTTCAA
128131066 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 6, Indels: 11
0.95 0.02 0.03
Matches are distributed among these distances:
256 60 0.19
257 60 0.19
260 2 0.01
262 4 0.01
263 131 0.41
265 54 0.17
266 9 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (256 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTT
TTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGTT
TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC
ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:128131325 original size:74 final size:74
Alignment explanation
Indices: 128131132--128131344 Score: 270
Period size: 74 Copynumber: 2.9 Consensus size: 74
128131122 CTACTTTTTC
*
128131132 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
128131197 GTTGTCAAA
66 GTTGTCAAA
* * *
128131206 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
***
128131270 -TATGT-TTT
66 GT-TGTCAAA
** * * *
128131278 AATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
128131343 CT
64 CT
128131345 TTTTCAATTT
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
72 35 0.29
73 4 0.03
74 80 0.67
75 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTCAAA
Found at i:128131355 original size:72 final size:71
Alignment explanation
Indices: 128130916--128131351 Score: 316
Period size: 72 Copynumber: 6.1 Consensus size: 71
128130906 TAATTTTTGT
* * *
128130916 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* *
128130981 TTTTTG
66 TTTCTA
* ** *
128130987 TGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCA
1 T-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
128131052 ATTTCTG
65 ATTTCTA
** * * * * ** * *** * * * ***
128131059 TTTTC--AATTTACGT--TGTT-CAAGA-ATCAACTCATATTGC-GAGAGTAGGTTGA-ACCTTT
1 TTTTCAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CAG-GA-CACGCTGAGGTATTT
128131116 T-AATTTCTA
62 TCAATTTCTA
*
128131125 CTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 --TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
128131190 AATTTCTG
64 AATTTCTA
* * * *
128131198 TTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 TTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
128131263 CAATTTTTA
63 CAATTTCTA
* ** * * *
128131272 TGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTT
1 T-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTT
128131337 CAATTTCT-
63 CAATTTCTA
128131345 TTTTCAA
1 TTTTCAA
128131352 TTTCTGTCTT
Statistics
Matches: 274, Mismatches: 69, Indels: 43
0.71 0.18 0.11
Matches are distributed among these distances:
66 13 0.05
67 10 0.04
68 13 0.05
69 4 0.01
70 6 0.02
71 16 0.06
72 113 0.41
73 14 0.05
74 83 0.30
75 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (71 bp):
TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
TTTCTA
Found at i:128131504 original size:76 final size:76
Alignment explanation
Indices: 128131345--128132031 Score: 303
Period size: 76 Copynumber: 8.8 Consensus size: 76
128131335 TTCAATTTCT
* *
128131345 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTGTCTGTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
*
128131410 CACGCTGAGGTA
65 CACGCCGAGGTA
* * *
128131422 ATTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--
128131485 ACACGCCGAGGTA
64 ACACGCCGAGGTA
* * * * * * *
128131498 TTTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGT
1 TTTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGC
*
128131559 GAGTTGAGCCTCAGGACACGCTGAGGTA
49 GAGTTGAGCCTCAGGACACGCCGAGGTA
* * * * *
128131587 ATTTCAATTTCTG--TGTC--AAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG--G
*
128131648 ACACGTCGAGGTA
64 ACACGCCGAGGTA
* * *
128131661 TTTTCAATTTCCATTTTCAATTTCTGCCTTTAAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
1 TTTTC-A-----A-TTTC--TGTCTG---TCAAAAAA---AATCAACTCATATTGCGAGAGGCGA
*
128131726 GTTGAGCCTC-GGACACGCTGAGGTA
51 GTTGAGCCTCAGGACACGCCGAGGTA
* * * ***
128131751 ATTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-GAC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
**
128131811 ACGTTGAGGTA
66 ACGCCGAGGTA
* * * * * *
128131822 TTTTCAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-A
* *
128131883 CATGCGCTGAGCTA
65 CA--CGCCGAGGTA
* * * *
128131897 -TTTCAATTTTCTATCTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GA
1 TTTTCAA-TTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
*
128131958 TCACACACTGAGGTA
65 -CACGC-C-GAGGTA
* * * * * * *
128131973 TTTTTTCAATTTATATTTTTC---AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 --TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTC
128132032 GGGTTACAGT
Statistics
Matches: 482, Mismatches: 67, Indels: 122
0.72 0.10 0.18
Matches are distributed among these distances:
71 62 0.13
72 50 0.10
73 3 0.01
74 75 0.16
75 16 0.03
76 76 0.16
77 54 0.11
78 11 0.02
79 6 0.01
80 2 0.00
81 6 0.01
83 5 0.01
84 1 0.00
85 2 0.00
86 2 0.00
87 5 0.01
88 2 0.00
89 33 0.07
90 20 0.04
91 17 0.04
92 1 0.00
93 33 0.07
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
ACGCCGAGGTA
Found at i:128131507 original size:165 final size:163
Alignment explanation
Indices: 128131186--128131841 Score: 913
Period size: 165 Copynumber: 4.0 Consensus size: 163
128131176 GCTGAGGTAA
* * *
128131186 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *** *
128131249 CGCTGAGGTATTTTCAATTT-T-TATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGC
65 CGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGC
128131312 CTCAGGTCACACGCCGAGGTATTTTCAATTT-CTT
129 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCTT
*
128131346 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
128131411 ACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAG
64 ACGCTGAGGTAATTTCAATTTCTGTTGTC-AAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
128131476 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
128 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCC-TT
*
128131513 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
128131578 GCTGAGGTAATTTCAATTTCTG-TGTCAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCT
* * *
128131642 CAGATCACACGTCGAGGTATTTTCAATTTCCAT
131 CAGGTCACACGCCGAGGTATTTTCAATTTCCTT
*
128131675 TTTCAATTTCTGCCTTTAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
1 TTTCAATTTCTGCCTTT---CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* * ***
128131739 CACGCTGAGGTAATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAG
63 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAG
**
128131803 CCTCA-G--ACACGTTGAGGTATTTTCAATTT-CTGT
128 CCTCAGGTCACACGCCGAGGTATTTTCAATTTCCT-T
128131836 TTTCAA
1 TTTCAA
128131842 AAAATCAACT
Statistics
Matches: 454, Mismatches: 28, Indels: 27
0.89 0.06 0.05
Matches are distributed among these distances:
160 13 0.03
161 31 0.07
162 19 0.04
163 126 0.28
164 71 0.16
165 175 0.39
166 1 0.00
167 18 0.04
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (163 bp):
TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTGTCAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCT
CAGGTCACACGCCGAGGTATTTTCAATTTCCTT
Found at i:128131633 original size:72 final size:74
Alignment explanation
Indices: 128131532--128131671 Score: 214
Period size: 72 Copynumber: 1.9 Consensus size: 74
128131522 TTGCCTTTCA
*
128131532 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTTCAA
128131594 TTTCTGTGTC
65 TTTCTGTGTC
* * *
128131604 AAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTCAAT
128131669 TTC
66 TTC
128131672 CATTTTCAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 39 0.64
74 21 0.34
75 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTCAAT
TTCTGTGTC
Found at i:128131678 original size:13 final size:13
Alignment explanation
Indices: 128131660--128131684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
128131650 ACGTCGAGGT
128131660 ATTTTCAATTTCC
1 ATTTTCAATTTCC
128131673 ATTTTCAATTTC
1 ATTTTCAATTTC
128131685 TGCCTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTCAATTTCC
Found at i:128131798 original size:71 final size:72
Alignment explanation
Indices: 128131697--128132033 Score: 374
Period size: 71 Copynumber: 4.6 Consensus size: 72
128131687 CCTTTAAAAA
128131697 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTC
128131762 TGTTTTC
66 TGTTTTC
* ** * * *
128131769 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAATTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTC
128131833 TGTTTTC
66 TGTTTTC
* * * * *
128131840 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCT-ATTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACA--CGCTGAGGTAATTTCAA-
*
128131904 TTTCTATCTTTC
62 TTTCTGT-TTTC
* * * *
128131916 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G--GACACGCTGAGGTA--ATTTCA
* *
128131981 ATTTATATTTTTC
61 ATTTCT-GTTTTC
* *
128131994 -AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGG
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
128132034 GTTACAGTGA
Statistics
Matches: 219, Mismatches: 33, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
71 65 0.30
72 33 0.15
73 2 0.01
74 6 0.03
75 13 0.06
76 47 0.21
77 36 0.16
78 10 0.05
79 7 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (72 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:128132022 original size:153 final size:143
Alignment explanation
Indices: 128131697--128132033 Score: 399
Period size: 153 Copynumber: 2.3 Consensus size: 143
128131687 CCTTTAAAAA
* *
128131697 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAATTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGGACACGCTGAGCTAATTTCAATTTC
* * **
128131762 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACGTTGAGGTATTTTC
66 TATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACACTGAGGTATTTTC
*
128131827 AATTTCTGTTTTC
131 AATTTATGTTTTC
* * *
128131840 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCT-ATTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGG-ACA--CGCTGAGCTAATTTCAA-
** *
128131904 TTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGA
62 TTTCTAT-TTTC-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG---ACACACTGA
*
128131969 GGTATTTTTTCAATTTATATTTTTC
122 GGTA--TTTTCAATTTAT-GTTTTC
* * *
128131994 -AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGG
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGG
128132034 GTTACAGTGA
Statistics
Matches: 163, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
143 38 0.23
144 2 0.01
145 7 0.04
146 14 0.09
147 4 0.02
148 36 0.22
151 11 0.07
153 46 0.28
154 5 0.03
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (143 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGGACACGCTGAGCTAATTTCAATTTC
TATTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGACACACTGAGGTATTTTC
AATTTATGTTTTC
Found at i:128132102 original size:239 final size:249
Alignment explanation
Indices: 128131822--128132402 Score: 672
Period size: 257 Copynumber: 2.3 Consensus size: 249
128131812 CGTTGAGGTA
* * * *
128131822 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATG
1 TTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
128131887 CGCTGAGCTA-TTTCAATTT-TCTATCTTTCAAAAAA-TCAACTCATATTGC-GAGAGGTGAGTT
65 CGCTGAGCTATTTTCAATTTGTCTATCTTTCAAAAAATTCAACTCATATTGCGGAGAGGTGA-TT
128131948 GAGC-TTCAGA-TC-AC-ACA-CTGA-G-GTATTT-TTTC-AATTTATATTTTTCAAAAATCAAC
129 G-GCTTTCA-ATTCTACGACAGCTGATGAGTATTTATTTCTAATTTATATTTTTCAAAAATCAAC
* * * * * *
128132004 TCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACA-GT-GAGGTATTTTCAAAATCTAT
192 TCACATTGCGAGAGGTGAG-TGAACCTC-AGTCACATATCGAGGTATTTTCAAAATCTAC
* *
128132062 TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT
1 TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
* * *
128132127 GCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAATTCAACTCATATTGCGGAGAGGTGATT
66 GCTGAGCTATTTTCAA-TT-TGTCTATCTTTCAAAAAATTCAACTCATATTGCGGAGAGGTGATT
* * * * * * *
128132192 GGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTTTTTAATTTCTTTAATTTCTGTTTTTCAAAAA
129 GGC-TTTCAA-TTCTACGACAGCTGA--TGAGTATTT-ATTTC--TAATTTATATTTTTCAAAAA
* *
128132257 TCAACTCATATTGCGAGAGGTGAGTGAACCTCAGTCACATATCGAGGTATTTTCAAAATCTGC
187 TCAACTCACATTGCGAGAGGTGAGTGAACCTCAGTCACATATCGAGGTATTTTCAAAATCTAC
* **
128132320 TTTTCAAGTTAAG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
1 TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
128132384 GCTGAGCTATTTTCAATTT
66 GCTGAGCTATTTTCAATTT
128132403 CTGTTTTTAA
Statistics
Matches: 288, Mismatches: 29, Indels: 33
0.82 0.08 0.09
Matches are distributed among these distances:
239 51 0.18
240 23 0.08
241 2 0.01
242 1 0.00
243 15 0.05
244 18 0.06
245 12 0.04
246 2 0.01
247 1 0.00
248 2 0.01
249 3 0.01
252 1 0.00
253 5 0.02
255 5 0.02
256 7 0.02
257 73 0.25
258 67 0.23
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (249 bp):
TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
GCTGAGCTATTTTCAATTTGTCTATCTTTCAAAAAATTCAACTCATATTGCGGAGAGGTGATTGG
CTTTCAATTCTACGACAGCTGATGAGTATTTATTTCTAATTTATATTTTTCAAAAATCAACTCAC
ATTGCGAGAGGTGAGTGAACCTCAGTCACATATCGAGGTATTTTCAAAATCTAC
Found at i:128141145 original size:30 final size:30
Alignment explanation
Indices: 128141109--128141209 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
128141099 GACAAGATTG
* * *
128141109 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
128141139 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
128141167 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
128141196 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
128141210 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:128141221 original size:29 final size:28
Alignment explanation
Indices: 128141138--128141213 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
128141128 AAAATTGTAC
* *
128141138 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
128141166 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
128141195 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
128141214 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:128146362 original size:30 final size:31
Alignment explanation
Indices: 128146321--128146378 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
128146311 TTTCCGAGCC
128146321 TAGGGGCAAAATTGTAATTCTG-CAAAGGTT
1 TAGGGGCAAAATTGTAATTCTGCCAAAGGTT
* *
128146351 TAGGGGTAAAATTGTAATTTTGCCAAAG
1 TAGGGGCAAAATTGTAATTCTGCCAAAG
128146379 TTTGAGTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (31 bp):
TAGGGGCAAAATTGTAATTCTGCCAAAGGTT
Found at i:128146972 original size:44 final size:44
Alignment explanation
Indices: 128146907--128146990 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
128146897 TTGATATCTC
* *
128146907 AAATTCCATAGTTGTACCATGGAAATTAAGGAAGAATTGATGGA
1 AAATTCCATAGTTATAACATGGAAATTAAGGAAGAATTGATGGA
* * *
128146951 AAATTCCAT-GTTTATAACATGGCATTTAAGGAGGAATTGA
1 AAATTCCATAG-TTATAACATGGAAATTAAGGAAGAATTGA
128146991 CGGTTAGGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.03
44 33 0.97
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (44 bp):
AAATTCCATAGTTATAACATGGAAATTAAGGAAGAATTGATGGA
Found at i:128147114 original size:47 final size:45
Alignment explanation
Indices: 128146996--128147106 Score: 134
Period size: 45 Copynumber: 2.4 Consensus size: 45
128146986 ATTGACGGTT
* * *
128146996 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGTA
1 AGGATCCCATGTAAGACCATGTCAAGACATGGCATCGGCAAGGTA
* * *
128147041 AGGATCCCGTGTAAGACCATGTCAAGACATGGCATCGGCATTGATTA
1 AGGATCCCATGTAAGACCATGTCAAGACATGGCATCGGCA-AG-GTA
128147088 AGGA-CTCCATGTAAGACCA
1 AGGATC-CCATGTAAGACCA
128147107 CATCAAGATG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 36 0.64
46 2 0.04
47 18 0.32
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (45 bp):
AGGATCCCATGTAAGACCATGTCAAGACATGGCATCGGCAAGGTA
Found at i:128147194 original size:47 final size:47
Alignment explanation
Indices: 128147129--128147303 Score: 154
Period size: 47 Copynumber: 3.6 Consensus size: 47
128147119 GCATTGGCAC
128147129 TAAGACAAGGATACCATGTAAGACCATCTTTGGAGCATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATCTTTGGAGCATGACATTTGG
* * *** * *
128147176 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCT-A
1 TAAGACAAGGATACCATGTAAGACCAT-CTTTGG-A--GCA-TGA-CA-TT-TGG
* * *
128147230 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATCTTTGGAGCATGACATTTGG
* * *
128147277 TAAGATAAGGATATCATGTAATACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
128147304 GCCAAGGCAT
Statistics
Matches: 99, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
46 1 0.01
47 51 0.52
48 4 0.04
49 3 0.03
50 2 0.02
51 3 0.03
52 4 0.04
53 3 0.03
54 27 0.27
55 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATCTTTGGAGCATGACATTTGG
Found at i:128147250 original size:101 final size:103
Alignment explanation
Indices: 128147129--128147587 Score: 457
Period size: 108 Copynumber: 4.4 Consensus size: 103
128147119 GCATTGGCAC
* *** * *
128147129 TAAGACAAGGATACCATGTAAGACCATCTTTGGAGCATGACATT-TG-GTAAGATAAGGATA-T-
1 TAAGGCAAGGATACCATGTAAGACCATCTCAAGA-CATGGCATTATGAGTAAGATAAGGAAAGTC
128147190 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
65 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-A
* * *** *
128147230 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT-TG-GTAAGATAAGGATA-T-
1 TAAGGCAAGGATACCATGTAAGACCATCTCAAG-ACATGGCATTATGAGTAAGATAAGGAAAGTC
*
128147291 CATGTAATACCATGCCAAGGCATGGCATTGATAAGTTCTA
65 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-A
* * * * * **
128147331 TAAGGCAAGGAAATCATGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTTCAAGGCAAAG
1 TAAGGCAAGGATACCATGTAAGACCATCTCAAGACATGGCATT-ATGAGTAAGAT-AAGG-AAA-
* * * *
128147396 GTCCCATATAAGACCATGCCAAGGCATGACATTGGTGAGTTCA
62 GT-CCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCA
** *
128147439 TAAGGCAAGGATACCATGTAAGACCATCTCAAGACATGGCATTGATGAGTTACTATAATGCAAAG
1 TAAGGCAAGGATACCATGTAAGACCATCTCAAGACATGGCATT-ATGAG-TAAGATAA-GGAAA-
* *
128147504 GTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
62 GT-CCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCA
* *
128147547 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATACCATGTAAGACCATCTCAAGACATGGCA
128147588 ATGGTAAGTT
Statistics
Matches: 314, Mismatches: 32, Indels: 17
0.87 0.09 0.05
Matches are distributed among these distances:
100 10 0.03
101 122 0.39
102 3 0.01
103 4 0.01
104 4 0.01
105 2 0.01
107 1 0.00
108 132 0.42
109 36 0.11
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (103 bp):
TAAGGCAAGGATACCATGTAAGACCATCTCAAGACATGGCATTATGAGTAAGATAAGGAAAGTCC
ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCA
Found at i:128147408 original size:55 final size:53
Alignment explanation
Indices: 128147182--128147587 Score: 380
Period size: 55 Copynumber: 7.7 Consensus size: 53
128147172 TTGGTAAGAT
* * * * *
128147182 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGC
*** **
128147236 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G----TAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTCATAAGGC
* * * * *
128147283 AAGGATATCATGTAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGC
* * * *
128147337 AAGGAAATCATGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTTCAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CAT-AAGGC
* * * * * *
128147392 AAAGG-TCCCATATAAGACCATGCCAAGGCATGACATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
* *
128147445 AAGGATACCATGTAAGACCATCTCAAGACATGGCATTGATGAGTTACTATAATGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * * *
128147500 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
*
128147553 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
128147588 ATGGTAAGTT
Statistics
Matches: 282, Mismatches: 53, Indels: 35
0.76 0.14 0.09
Matches are distributed among these distances:
46 9 0.03
47 26 0.09
48 1 0.00
49 1 0.00
52 9 0.03
53 71 0.25
54 70 0.25
55 87 0.31
56 8 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:128147489 original size:108 final size:108
Alignment explanation
Indices: 128147299--128147587 Score: 463
Period size: 108 Copynumber: 2.7 Consensus size: 108
128147289 ATCATGTAAT
* * * * *
128147299 ACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACTATGTCAAG
1 ACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACCATGTCAAG
128147364 ACATGGCATTGATGAGTTACT-TCAAGGCAAAGGTCCCATATAAG
65 ACATGGCATTGATGAGTTACTAT-AAGGCAAAGGTCCCATATAAG
* *
128147408 ACCATGCCAAGGCATGACATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATCTCAAGA
1 ACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGA
* *
128147473 CATGGCATTGATGAGTTACTATAATGCAAAGGTCCCATGTAAG
66 CATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATATAAG
*
128147516 ACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCATGTCAAGA
1 ACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGA
128147581 CATGGCA
66 CATGGCA
128147588 ATGGTAAGTT
Statistics
Matches: 167, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
108 139 0.83
109 28 0.17
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (108 bp):
ACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGA
CATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATATAAG
Found at i:128149430 original size:26 final size:25
Alignment explanation
Indices: 128149382--128149431 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 25
128149372 TAACACACAA
128149382 ATTTCACATTTCACAAATTAGTCCCT
1 ATTTCACATTTCACAAA-TAGTCCCT
128149408 ATTTCACATTTTCATCAAA-AGTCC
1 ATTTCACA-TTTCA-CAAATAGTCC
128149432 TTTAACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 13 0.59
27 5 0.23
28 4 0.18
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTTCACATTTCACAAATAGTCCCT
Found at i:128155740 original size:31 final size:32
Alignment explanation
Indices: 128155702--128155763 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
128155692 CTCACTGCGA
* *
128155702 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
128155733 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
128155764 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:128162976 original size:39 final size:39
Alignment explanation
Indices: 128162922--128163034 Score: 154
Period size: 39 Copynumber: 2.9 Consensus size: 39
128162912 AATGTTCGAG
*
128162922 TGATATCCGAGCTAAGCCCGAAGGCAATTGTGCGAGCCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
* ***
128162961 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
* *
128163000 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
128163035 GGTTACCATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 49 0.75
40 16 0.25
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
Found at i:128166385 original size:2 final size:2
Alignment explanation
Indices: 128166378--128166415 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
128166368 GCTTCGCCAC
128166378 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128166416 CTGTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128166464 original size:27 final size:26
Alignment explanation
Indices: 128166412--128166471 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
128166402 ATATATATAT
*
128166412 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
128166438 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
128166465 ATATCTG
1 ATATCTG
128166472 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:128167338 original size:45 final size:45
Alignment explanation
Indices: 128167256--128167341 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
128167246 TGTTTTGGGA
**
128167256 AGTATGATTATGTTATGGGTATGAGTAAAATTTGTGTAAATGTGT
1 AGTATGATTATGTTATGGGTATGAGTAAAATACGTGTAAATGTGT
**
128167301 AGTATGATTATGTTATGGGTATGAGTGGAATACGTGTAAAT
1 AGTATGATTATGTTATGGGTATGAGTAAAATACGTGTAAAT
128167342 ATGTTCATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.31, C:0.01, G:0.28, T:0.40
Consensus pattern (45 bp):
AGTATGATTATGTTATGGGTATGAGTAAAATACGTGTAAATGTGT
Found at i:128170527 original size:40 final size:40
Alignment explanation
Indices: 128170446--128170666 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
128170436 CAACCAAGTA
** * *
128170446 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
128170485 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
128170525 CCTTTGGGACTTA-CCCGGTTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
128170564 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * * *
128170604 CCTTCGGGACTTACCCCGG-AATTAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
128170644 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
128170667 CATCCGAATA
Statistics
Matches: 160, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 50 0.31
40 109 0.68
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:128170596 original size:79 final size:80
Alignment explanation
Indices: 128170479--128170666 Score: 290
Period size: 79 Copynumber: 2.4 Consensus size: 80
128170469 GCTACTCGCT
* *
128170479 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTTGGGACTTA-CCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTACCCCGG
* * *
128170543 -TTATAGTAACTCGTA
66 AAT-TAGTAACTAGCA
128170558 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTACCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTACCCCGG
* *
128170623 AATTAGTCATTAGCA
66 AATTAGTAACTAGCA
128170638 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
128170667 CATCCGAATA
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
79 57 0.57
80 42 0.42
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTACCCCGG
AATTAGTAACTAGCA
Found at i:128178567 original size:40 final size:40
Alignment explanation
Indices: 128178498--128178718 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
128178488 CAACCAAGTA
* * *
128178498 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
128178536 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
128178576 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
128178616 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * *
128178656 CCTTCGGGACTTAGCCCGG-AATTAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
128178696 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
128178719 CATCCGAATA
Statistics
Matches: 168, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
38 8 0.05
39 6 0.04
40 153 0.91
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:128185852 original size:40 final size:40
Alignment explanation
Indices: 128185771--128185992 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
128185761 CAACCAAGTA
** * *
128185771 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
128185810 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
128185850 CCTTTGGGACTTAACCCGGTTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
128185890 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * * *
128185930 CCTTCGGGACTTACCCCGG-AATTAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
128185970 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
128185993 CATCCGAATA
Statistics
Matches: 158, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 143 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:128190658 original size:40 final size:40
Alignment explanation
Indices: 128190556--128190738 Score: 138
Period size: 39 Copynumber: 4.6 Consensus size: 40
128190546 TGCTGGAAAT
* * * * * **
128190556 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
128190596 TATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
128190635 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
128190673 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
128190714 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
128190739 GTTTGAACGA
Statistics
Matches: 113, Mismatches: 26, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 60 0.53
40 52 0.46
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:128190707 original size:79 final size:79
Alignment explanation
Indices: 128190561--128190743 Score: 174
Period size: 79 Copynumber: 2.3 Consensus size: 79
128190551 GAAATTATAA
* * * * *
128190561 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGCTAAGACCCGAAGGCATTCGT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGCTAAGACCCGAAGGCATTCGT
*
128190626 GCGAGTCATTC-TAT
66 GCGAGTCA-CCATAT
* * * * *
128190640 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCC-GGCTAAGACCCGAAGGCATTC
* *
128190703 GTGCGGGTTACCATAT
64 GTGCGAGTCACCATAT
* * *
128190719 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
128190744 AACGAGTAGC
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
77 1 0.01
78 10 0.12
79 74 0.87
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGCTAAGACCCGAAGGCATTCGT
GCGAGTCACCATAT
Found at i:128198425 original size:39 final size:40
Alignment explanation
Indices: 128198345--128198511 Score: 180
Period size: 39 Copynumber: 4.2 Consensus size: 40
128198335 AAATTGAATG
* * * **
128198345 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
128198384 ATATCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
128198423 ATATCCGGGCTATAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTA-AGACCCGAAGGCAATT-GTGCTAGTGATT
* *
128198464 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
128198504 ATATCCGG
1 ATATCCGG
128198512 TTATATTCCG
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
38 4 0.04
39 38 0.36
40 32 0.30
41 33 0.31
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:128201748 original size:2 final size:2
Alignment explanation
Indices: 128201741--128201766 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
128201731 TTGTTTGAAG
128201741 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
128201767 CGGCAATGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128203037 original size:48 final size:48
Alignment explanation
Indices: 128202967--128203872 Score: 1345
Period size: 48 Copynumber: 19.0 Consensus size: 48
128202957 AGATAAATAT
* *
128202967 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
128203015 ATATATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
** *
128203063 ATATATATAAGATATGTATATGTGGTAAAGTCGAA-GGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
128203110 ATACATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCTAATGAGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
128203158 ATATATGTGTGATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
** *
128203206 ATATATATAAGATAT-TATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
128203253 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
128203301 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
128203349 ATATATTTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
128203397 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
128203445 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
128203492 A-ATATATGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
128203539 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
** ** * *
128203587 ATATATATGACATATGTATATGTCATAAAGCTGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
128203635 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
128203683 ATATATGTGTGATACGTATATGTGGTAAAGCCAAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
128203731 ATATATGTGTGATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
128203778 ATATATATGAGATATGTATATGTTGTAAAGCCGAATGGCGAATGTCAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
128203826 ATATGTATGAGATAAGAATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
128203873 GTGTTGTAAC
Statistics
Matches: 778, Mismatches: 75, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
46 41 0.05
47 131 0.17
48 606 0.78
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:128203513 original size:286 final size:286
Alignment explanation
Indices: 128202977--128203872 Score: 1384
Period size: 286 Copynumber: 3.1 Consensus size: 286
128202967 ATATATGTGT
* *
128202977 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTGTATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
* *
128203042 AAGCCGAATGGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGTCGAA-GGCTAATG
66 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * *
128203106 TGAAATACATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCTAATGAGAAATATATGTGTGAT
131 TGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGAT
* *
128203171 ATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAGATAT-TATATGTGGTAAAG
196 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGT--GATATGTATATGTGGTAAAG
128203235 CCGAATGGCGAATGTGAAATATGTATGA
259 CCGAATGGCGAATGTGAAATATGTATGA
128203263 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
* *
128203328 AAGCCGAATGGCTAATGTGAAATATATTTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATG
66 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * * * * *
128203393 TGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGAT
131 TGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGAT
*
128203458 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTTATGTATATGTGGTAAAGCC
196 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGATATGTATATGTGGTAAAGCC
* * * *
128203523 GAATGGCTAATGTGAAATATATGTGT
261 GAATGGCGAATGTGAAATATGTATGA
* ** **
128203549 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGACATATGTATATGTCATA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
* * * *
128203614 AAGCTGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGGTAATG
66 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
128203679 TGAAATATATGTGTGATACGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATGTGTGAT
131 TGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGAT
* *
128203744 ATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTTGTAAAG
196 ATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATGTGATATGTATATGTGGTAAAG
*
128203808 CCGAATGGCGAATGTCAAATATGTATGA
259 CCGAATGGCGAATGTGAAATATGTATGA
* *
128203836 GATAAGAATATGTGGTAAAGCCGAATGGCTAATGTGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
128203873 GTGTTGTAAC
Statistics
Matches: 553, Mismatches: 53, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
285 23 0.04
286 343 0.62
287 187 0.34
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.31
Consensus pattern (286 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGAT
ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGATATGTATATGTGGTAAAGCC
GAATGGCGAATGTGAAATATGTATGA
Found at i:128203957 original size:37 final size:37
Alignment explanation
Indices: 128203907--128204040 Score: 223
Period size: 37 Copynumber: 3.6 Consensus size: 37
128203897 ACATGAAACT
*
128203907 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTA
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
128203944 TGGAGATTATGTCCGGGTAAGGCCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* * *
128203981 TGTAGATTACGTCCGGGTAAGACCCGATGACTACATG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
128204018 TGGAGATTATGTCCGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
128204041 TTCGTAATAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 89 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:128205114 original size:45 final size:45
Alignment explanation
Indices: 128205051--128205272 Score: 311
Period size: 45 Copynumber: 4.9 Consensus size: 45
128205041 GATATCATTT
* * *
128205051 CACCAGCATTATAGCCTGCTAGTCTCGAACGCCCGAATAGTATCA
1 CACCGGCATTATAGCCTGCTAGGCTCAAACGCCCGAATAGTATCA
* * * *
128205096 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTAACT
1 CACCGGCATTATAGCCTGCTAGGCTCAAACGCCCGAATAGTATCA
* * * *
128205141 CACCGGCATTATAACCTTCTAGGCTCAAAAGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAACGCCCGAATAGTATCA
*
128205186 CACCGGCATTATAGCCTGCTAGGCTCAAACGCCTGAATAGTAT-A
1 CACCGGCATTATAGCCTGCTAGGCTCAAACGCCCGAATAGTATCA
*
128205230 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 -CACCGGCATTATAGCCTGCTAGGCTCAAACGCCCGAATAGTA
128205273 CTGTACGATA
Statistics
Matches: 157, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 157 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAACGCCCGAATAGTATCA
Found at i:128205800 original size:2 final size:2
Alignment explanation
Indices: 128205793--128205818 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
128205783 TCATATTTTC
128205793 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
128205819 CTTTACCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128206160 original size:25 final size:24
Alignment explanation
Indices: 128206136--128206250 Score: 149
Period size: 25 Copynumber: 4.6 Consensus size: 24
128206126 TAACCTGAAA
*
128206136 TATTAAGAGCAAATTTAACGAGAAA
1 TATTAAGAGCAAATTTAACG-GAAT
128206161 TATTAAGAGCAAATTTAACCGGAAT
1 TATTAAGAGCAAATTTAA-CGGAAT
* * *
128206186 TATTAAGAACAAATTTGACCAGAAT
1 TATTAAGAGCAAATTT-AACGGAAT
128206211 TATTAAGAGCAAATTTAACTGGAAT
1 TATTAAGAGCAAATTTAAC-GGAAT
*
128206236 TATTAAGAACAAATT
1 TATTAAGAGCAAATT
128206251 AACAAGCTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.03
25 74 0.94
26 3 0.04
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (24 bp):
TATTAAGAGCAAATTTAACGGAAT
Found at i:128206161 original size:12 final size:13
Alignment explanation
Indices: 128206133--128206178 Score: 62
Period size: 12 Copynumber: 3.7 Consensus size: 13
128206123 CTTTAACCTG
128206133 AAATATTAAGAGC
1 AAATATTAAGAGC
128206146 AAAT-TTAACGAG-
1 AAATATTAA-GAGC
128206158 AAATATTAAGAGC
1 AAATATTAAGAGC
128206171 AAAT-TTAA
1 AAATATTAA
128206179 CCGGAATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 15 0.50
13 15 0.50
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26
Consensus pattern (13 bp):
AAATATTAAGAGC
Found at i:128206190 original size:50 final size:50
Alignment explanation
Indices: 128206124--128206250 Score: 191
Period size: 50 Copynumber: 2.5 Consensus size: 50
128206114 TAATAAGGGC
* * * *
128206124 TTTAACCTGAAATATTAAGAGCAAATTTAACGAGAAATATTAAGAGCAAA
1 TTTAACCGGAATTATTAAGAACAAATTTAACCAGAAATATTAAGAGCAAA
* *
128206174 TTTAACCGGAATTATTAAGAACAAATTTGACCAGAATTATTAAGAGCAAA
1 TTTAACCGGAATTATTAAGAACAAATTTAACCAGAAATATTAAGAGCAAA
*
128206224 TTTAACTGGAATTATTAAGAACAAATT
1 TTTAACCGGAATTATTAAGAACAAATT
128206251 AACAAGCTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.29
Consensus pattern (50 bp):
TTTAACCGGAATTATTAAGAACAAATTTAACCAGAAATATTAAGAGCAAA
Found at i:128218255 original size:55 final size:53
Alignment explanation
Indices: 128218126--128218379 Score: 254
Period size: 53 Copynumber: 4.8 Consensus size: 53
128218116 ATTAGGGTTT
* *
128218126 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGG-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
128218180 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
128218235 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
128218288 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
128218337 AAGGATACCACGTAAGACCATGGCAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
128218380 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
49 39 0.23
51 3 0.02
52 8 0.05
53 49 0.28
54 36 0.21
55 33 0.19
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:128218331 original size:108 final size:109
Alignment explanation
Indices: 128218133--128218332 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 109
128218123 TTTAAGGATA
*
128218133 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAGGAAATCATGTAAGAC
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAGGAAACCATGTAAGAC
*
128218198 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
128218242 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGG-AAGGAAACCATGTAAG
*
128218304 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
128218333 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
106 3 0.04
107 6 0.07
108 48 0.57
109 27 0.32
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:128218474 original size:23 final size:24
Alignment explanation
Indices: 128218448--128218492 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
128218438 AAGGTAAGAT
*
128218448 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
128218471 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
128218493 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:128220403 original size:37 final size:37
Alignment explanation
Indices: 128220347--128220418 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
128220337 AAAGAGTTTG
**
128220347 TGATCTATAGCGATGCATCATTGAATGGTTTGGGTGC
1 TGATCTATAGCGACACATCATTGAATGGTTTGGGTGC
*
128220384 TGATCTATAGTGACACATCATTGAATGGTTTGGGT
1 TGATCTATAGCGACACATCATTGAATGGTTTGGGT
128220419 TGTGTTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (37 bp):
TGATCTATAGCGACACATCATTGAATGGTTTGGGTGC
Found at i:128225198 original size:46 final size:46
Alignment explanation
Indices: 128225071--128225199 Score: 134
Period size: 46 Copynumber: 2.8 Consensus size: 46
128225061 TGGTTGAGTT
* ** * * * *
128225071 CCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCAT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGT-TTATGGAACGAGACAC
* * **
128225118 CCGAGCTCGTTGAATTGAGTTCGAGTTCACTTATGGATACGA-ACAC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTTTATGGA-ACGAGACAC
128225164 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTTTATGG
128225200 GTGGGTTACA
Statistics
Matches: 66, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
46 38 0.58
47 28 0.42
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTTTATGGAACGAGACAC
Found at i:128227761 original size:48 final size:46
Alignment explanation
Indices: 128227643--128227763 Score: 120
Period size: 46 Copynumber: 2.6 Consensus size: 46
128227633 TGATATGTGT
* *
128227643 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGCATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATAGCATGAAA
* * * * * *
128227689 GCCAGTGTAAGAAAT-TTCTAGGACATGCATCGGCC-TCGCGATATACAA
1 GCTAGTGTAAGACATGTT-TGGGACATGCATCAGCCATAGC-AT-GA-AA
128227737 GCTAGTGTAAGACATGTTTGGGACATG
1 GCTAGTGTAAGACATGTTTGGGACATG
128227764 GCGTCAGCTT
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.07
46 30 0.51
47 1 0.02
48 22 0.37
49 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATAGCATGAAA
Found at i:128251448 original size:93 final size:93
Alignment explanation
Indices: 128251318--128251490 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
128251308 CGCCCATAAG
* * * *
128251318 CGAATTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
128251383 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
* *
128251411 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
128251476 ATAAGTTCGGATGCC
66 ACAAGCTCGGATGCC
128251491 CAAAAATCCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:128251486 original size:46 final size:46
Alignment explanation
Indices: 128251311--128251476 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
128251301 TGTAACCCGC
* * *
128251311 CCATAAGCGAATTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
128251357 CCGTAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* *
128251407 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
128251450 CCATAAGTGAACTTGGACTCAACTCAA
1 CCATAAGCGAACTCGGACTCAACTCAA
128251477 TAAGTTCGGA
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 50 0.51
47 28 0.29
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:128257638 original size:40 final size:40
Alignment explanation
Indices: 128257583--128257672 Score: 180
Period size: 40 Copynumber: 2.2 Consensus size: 40
128257573 TATGTGCATA
128257583 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
128257623 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
128257663 GCATTCGTGC
1 GCATTCGTGC
128257673 TAGTTGTTAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:128260238 original size:17 final size:19
Alignment explanation
Indices: 128260215--128260260 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
128260205 AAGAAGCATG
128260215 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
128260233 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
128260251 AATCATGCTC
1 AATCATGCTC
128260261 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:128267273 original size:40 final size:40
Alignment explanation
Indices: 128267228--128267394 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
128267218 CGGAATATAA
128267228 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
128267268 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
128267308 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
128267348 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
128267387 CCGGATAT
1 CCGGATAT
128267395 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:128267378 original size:80 final size:79
Alignment explanation
Indices: 128267228--128267394 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
128267218 CGGAATATAA
* *
128267228 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
128267293 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
128267308 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
128267370 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
128267387 CCGGATAT
1 CCGGATAT
128267395 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:128268242 original size:17 final size:19
Alignment explanation
Indices: 128268219--128268264 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
128268209 AAGAAGCATG
128268219 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
128268237 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
128268255 AATCATGCTC
1 AATCATGCTC
128268265 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:128275765 original size:55 final size:54
Alignment explanation
Indices: 128275630--128275816 Score: 196
Period size: 55 Copynumber: 3.5 Consensus size: 54
128275620 TGCCACATCA
* * *
128275630 TGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCATTGCCATGACT
1 TGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGACT
* * * * * * * *
128275683 TGGCATGGTTTTACATGGGATCTTTGCCTTATAGTAGTGTATCAATGCCATGTCT
1 TGACATGGTCTTACATGGTATCCTTGCCTTATAGAACT-TACCAATGCCATGACT
* * * *
128275738 TGACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATGCCATGCCT
1 TGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGACT
* * *
128275792 TGGCATGGTCTTACTTGGTGTCCTT
1 TGACATGGTCTTACATGGTATCCTT
128275817 AAACCCTAAT
Statistics
Matches: 106, Mismatches: 26, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 27 0.25
54 38 0.36
55 41 0.39
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (54 bp):
TGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGACT
Found at i:128281856 original size:53 final size:54
Alignment explanation
Indices: 128281787--128281993 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 54
128281777 TTCCTTTTTA
* * * *
128281787 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
128281840 AACTCACCATTGCCATGCCTTGGCATGGTCTTATATGAG-ATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCCTTGCCTTATAG
* * ** * ** * * * *
128281894 TAGTGTATGAATGTCATATCTTGACATGGTCTTACATGATTTCCCTGCCTTGTAG
1 AACT-TACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
128281949 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
128281994 AAACCCTAAT
Statistics
Matches: 115, Mismatches: 35, Indels: 7
0.73 0.22 0.04
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 37 0.32
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:128284623 original size:29 final size:29
Alignment explanation
Indices: 128284560--128284667 Score: 130
Period size: 29 Copynumber: 3.8 Consensus size: 29
128284550 TTCACATACT
* * *
128284560 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
128284588 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
128284617 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* **
128284646 TTTATATGGCCCGGTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
128284668 GTCACATTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.25
29 50 0.72
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:128284933 original size:16 final size:16
Alignment explanation
Indices: 128284891--128284925 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
128284881 GTAGCCAAAC
128284891 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
128284907 TTTCAACTTTTCGGCA
1 TTTCAGCTTTTCGGCA
128284923 TTT
1 TTT
128284926 TGGCTTTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:128286434 original size:19 final size:19
Alignment explanation
Indices: 128286410--128286461 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
128286400 AAGATGAGTT
128286410 ATTAACTAAGATGAACTCA
1 ATTAACTAAGATGAACTCA
*
128286429 ATTAACTAAAATGAACTCA
1 ATTAACTAAGATGAACTCA
128286448 ATTAACTAAGATGA
1 ATTAACTAAGATGA
128286462 GTAATTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (19 bp):
ATTAACTAAGATGAACTCA
Found at i:128291931 original size:13 final size:13
Alignment explanation
Indices: 128291913--128291937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
128291903 ACAAACGATA
128291913 AAATTTTCACACG
1 AAATTTTCACACG
128291926 AAATTTTCACAC
1 AAATTTTCACAC
128291938 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:128296117 original size:16 final size:16
Alignment explanation
Indices: 128296096--128296129 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
128296086 ATAAAAATTT
* *
128296096 CATTCAATCTTAAAAA
1 CATTCAAACATAAAAA
128296112 CATTCAAACATAAAAA
1 CATTCAAACATAAAAA
128296128 CA
1 CA
128296130 ATGCCCCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.24
Consensus pattern (16 bp):
CATTCAAACATAAAAA
Found at i:128296701 original size:86 final size:86
Alignment explanation
Indices: 128296556--128296716 Score: 277
Period size: 86 Copynumber: 1.9 Consensus size: 86
128296546 CACATGGCCA
* * *
128296556 GACAACATGCCTATGGGGCTAACCTTGTGTCACACACGGCCTAGACACATACCCGTGTGTCTACC
1 GACAACACGCCCATGGGGCTAACCGTGTGTCACACACGGCCTAGACACATACCCGTGTGTCTACC
*
128296621 TGTGTGGACATTATACGGCTG
66 CGTGTGGACATTATACGGCTG
*
128296642 GACAACACGCCCATGGGGCTAACCGTGTGTCACACACGGCCTAGACACATGCCCGTGTGTCTACC
1 GACAACACGCCCATGGGGCTAACCGTGTGTCACACACGGCCTAGACACATACCCGTGTGTCTACC
128296707 CGTGTGGACA
66 CGTGTGGACA
128296717 ACTTTGAGGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 70 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.21
Consensus pattern (86 bp):
GACAACACGCCCATGGGGCTAACCGTGTGTCACACACGGCCTAGACACATACCCGTGTGTCTACC
CGTGTGGACATTATACGGCTG
Found at i:128296710 original size:42 final size:42
Alignment explanation
Indices: 128296581--128296712 Score: 131
Period size: 42 Copynumber: 3.1 Consensus size: 42
128296571 GGGCTAACCT
* *
128296581 TGTGTCACACACGGCCTAGACACATACCCGTGTGTCTACCTG
1 TGTGTCACACACGGCCTAGACACATGCCCGTGTGTCTACCCG
* * * * * * * * *
128296623 TGTGGACATTATACGG-CTGGACAACACGCCCATGGGGCTAACCG
1 TGT-GTCA-CACACGGCCTAGAC-ACATGCCCGTGTGTCTACCCG
128296667 TGTGTCACACACGGCCTAGACACATGCCCGTGTGTCTACCCG
1 TGTGTCACACACGGCCTAGACACATGCCCGTGTGTCTACCCG
128296709 TGTG
1 TGTG
128296713 GACAACTTTG
Statistics
Matches: 66, Mismatches: 20, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
42 28 0.42
43 16 0.24
44 22 0.33
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (42 bp):
TGTGTCACACACGGCCTAGACACATGCCCGTGTGTCTACCCG
Found at i:128301527 original size:39 final size:39
Alignment explanation
Indices: 128301480--128301662 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
128301470 AATGTTCGAG
128301480 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
128301519 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
128301558 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
128301597 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
128301637 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
128301663 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:128304279 original size:47 final size:48
Alignment explanation
Indices: 128304171--128304348 Score: 263
Period size: 48 Copynumber: 3.7 Consensus size: 48
128304161 CCATGCTAAA
* *
128304171 TGTGTCAGTGTAAGACCATGTCTGGGACATGGTATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
*
128304219 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GAGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
*
128304266 TGTGCCAGTGTAAGACAATGTCTGGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
* *
128304314 TAGAT-TCA-TGTAAGACCATGTCGGGGACATGGCAT
1 T-G-TGCCAGTGTAAGACCATGTCTGGGACATGGCAT
128304349 TGGTACTTTA
Statistics
Matches: 119, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 45 0.38
48 70 0.59
49 3 0.03
50 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
Found at i:128304341 original size:95 final size:95
Alignment explanation
Indices: 128304171--128304348 Score: 279
Period size: 95 Copynumber: 1.9 Consensus size: 95
128304161 CCATGCTAAA
* * *
128304171 TGTGTCAGTGTAAGACCATGTCTGGGACATGGTATCGGTGATGATATGTGTGCCAGTGTAAGACC
1 TGTGCCAGTGTAAGACAATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCAGTGTAAGACC
*
128304236 ATGTCTGGGACATGGCATCGAGATGATATG
66 ATGTCGGGGACATGGCATCGAGATGATATG
*
128304266 TGTGCCAGTGTAAGACAATGTCTGGGACATGGCATCGGTGATGATATGTAGAT-TCA-TGTAAGA
1 TGTGCCAGTGTAAGACAATGTCTGGGACATGGCATCGGTGATGATATGT-G-TGCCAGTGTAAGA
128304329 CCATGTCGGGGACATGGCAT
64 CCATGTCGGGGACATGGCAT
128304349 TGGTACTTTA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
95 72 0.95
96 3 0.04
97 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (95 bp):
TGTGCCAGTGTAAGACAATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCAGTGTAAGACC
ATGTCGGGGACATGGCATCGAGATGATATG
Found at i:128309936 original size:93 final size:93
Alignment explanation
Indices: 128309830--128310000 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
128309820 GCCCATAAGT
* * *
128309830 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
128309895 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
128309923 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
128309988 CGAGTTCGGATGC
66 CGAGCTCAGATGC
128310001 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:128309997 original size:46 final size:46
Alignment explanation
Indices: 128309822--128309997 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
128309812 TGTAACCCGC
* * *
128309822 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
128309868 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
128309914 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
128309961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
128309998 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 68 0.64
47 30 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:128312982 original size:40 final size:40
Alignment explanation
Indices: 128312897--128313047 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
128312887 AATTGAATGA
* * *
128312897 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
128312937 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
128312978 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
128313017 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
128313048 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:128313061 original size:40 final size:40
Alignment explanation
Indices: 128312934--128313063 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
128312924 ATGCTGGAAA
* * * *
128312934 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
128312974 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
128313014 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
128313054 TTATATCCGG
1 TTATATCCGG
128313064 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:128320982 original size:38 final size:38
Alignment explanation
Indices: 128320851--128320998 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
128320841 AATTGAATGA
* * * *
128320851 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
128320890 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
128320928 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
128320968 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
128320999 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:128321013 original size:78 final size:78
Alignment explanation
Indices: 128320850--128321014 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
128320840 AAATTGAATG
*
128320850 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
128320915 TTGTGCTAGTGGCT
65 TTGTGCTAATGGCT
* * * * *
128320929 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
128320992 TTTGTGC-ACATGGTT
64 ATTGTGCTA-ATGGCT
128321007 ATATCCGG
1 ATATCCGG
128321015 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAATGGCT
Found at i:128324295 original size:34 final size:34
Alignment explanation
Indices: 128324252--128324318 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
128324242 AGTAATAAGG
128324252 AACGTGATCCATAGTTTCAAATACTGAAAGAAAA
1 AACGTGATCCATAGTTTCAAATACTGAAAGAAAA
128324286 AACGTGATCCATAGTTTCAAATACTGAAAGAAA
1 AACGTGATCCATAGTTTCAAATACTGAAAGAAA
128324319 TAGACTTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (34 bp):
AACGTGATCCATAGTTTCAAATACTGAAAGAAAA
Found at i:128349538 original size:72 final size:72
Alignment explanation
Indices: 128349453--128349598 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
128349443 TTGAAAAAAG
128349453 AAAATCAAACAGCAATTGTATAAGGAAAGTGGCCTTAAATATATATTTACTGTAGATTAAATGAA
1 AAAATCAAACAGCAATTGTATAAGGAAAGTGGCCTTAAATATATATTTACTGTAGATTAAATGAA
128349518 AACAGAC
66 AACAGAC
128349525 AAAATCAAACAGCAATTGTATAAGGAAAGTGGCCTTAAATATATATTTACTGTAGATTAAATGAA
1 AAAATCAAACAGCAATTGTATAAGGAAAGTGGCCTTAAATATATATTTACTGTAGATTAAATGAA
128349590 AACAGAC
66 AACAGAC
128349597 AA
1 AA
128349599 GTGTTCAAGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (72 bp):
AAAATCAAACAGCAATTGTATAAGGAAAGTGGCCTTAAATATATATTTACTGTAGATTAAATGAA
AACAGAC
Found at i:128350763 original size:22 final size:21
Alignment explanation
Indices: 128350721--128350764 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
128350711 CACCATGTAG
* *
128350721 TTCATCATGTTGATCCCAGAA
1 TTCACCATGTTGATCACAGAA
*
128350742 TTCACCATGTTTGATCAGAGAA
1 TTCACCATG-TTGATCACAGAA
128350764 T
1 T
128350765 CATCTTGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (21 bp):
TTCACCATGTTGATCACAGAA
Found at i:128354947 original size:16 final size:16
Alignment explanation
Indices: 128354926--128354960 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
128354916 CTGCTCCGAC
128354926 ACAAGCCAACCCAATA
1 ACAAGCCAACCCAATA
*
128354942 ACAAGCTAACCCAATA
1 ACAAGCCAACCCAATA
128354958 ACA
1 ACA
128354961 CAGTACTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
ACAAGCCAACCCAATA
Found at i:128357392 original size:70 final size:71
Alignment explanation
Indices: 128357263--128357404 Score: 250
Period size: 70 Copynumber: 2.0 Consensus size: 71
128357253 CTAAAATATG
* *
128357263 ATGGTATTCACGGGGCATTAGACAAGAATAAAAATGATTTAGATTTAGGTGGAATAGAAAGGTAA
1 ATGGTATTCACAGGGCATAAGACAAGAATAAAAATGATTTAGATTTAGGTGGAATAGAAAGGTAA
128357328 ATGGTC
66 ATGGTC
*
128357334 ATGGTATTCACAGGGCATAAGACAAG-ATTAAAATGATTTAGATTTAGGTGGAATAGAAAGGTAA
1 ATGGTATTCACAGGGCATAAGACAAGAATAAAAATGATTTAGATTTAGGTGGAATAGAAAGGTAA
128357398 ATGGTC
66 ATGGTC
128357404 A
1 A
128357405 ACCTTGCCAG
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
70 44 0.65
71 24 0.35
ACGTcount: A:0.40, C:0.07, G:0.26, T:0.27
Consensus pattern (71 bp):
ATGGTATTCACAGGGCATAAGACAAGAATAAAAATGATTTAGATTTAGGTGGAATAGAAAGGTAA
ATGGTC
Found at i:128361496 original size:106 final size:105
Alignment explanation
Indices: 128361311--128361522 Score: 415
Period size: 106 Copynumber: 2.0 Consensus size: 105
128361301 AGTTCATGTG
128361311 ACAACAAATGATAATAGGTTAGATCCAGAACATTAGCAGCCAGGCAAAGACTGCAGCCTTAGATC
1 ACAACAAATGATAATAGGTTAGATCCAGAACATTAGCAGCCAGGCAAAGACTGCAGCCTTAGATC
128361376 TGGTACTCTGACTGAAGCCTCAGGACTAAGATAAACATGAT
66 TGGTACTCTGACTGAAGCCTCAGGACTAAGAT-AACATGAT
128361417 ACAACAAATGATAATAGGTTAGATCCAGAACATTAGCAGCCAGGCAAAGACTGCAGCCTTAGATC
1 ACAACAAATGATAATAGGTTAGATCCAGAACATTAGCAGCCAGGCAAAGACTGCAGCCTTAGATC
128361482 TGGTACTCTGACTGAAGCCTCAGGACTAAGATAACATGAT
66 TGGTACTCTGACTGAAGCCTCAGGACTAAGATAACATGAT
128361522 A
1 A
128361523 TCAATCATAT
Statistics
Matches: 106, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 9 0.08
106 97 0.92
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (105 bp):
ACAACAAATGATAATAGGTTAGATCCAGAACATTAGCAGCCAGGCAAAGACTGCAGCCTTAGATC
TGGTACTCTGACTGAAGCCTCAGGACTAAGATAACATGAT
Found at i:128361903 original size:15 final size:16
Alignment explanation
Indices: 128361876--128361905 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
128361866 TTTAGTCCAT
128361876 TTGGATAATTTCAACC
1 TTGGATAATTTCAACC
128361892 TTGGAT-ATTTCAAC
1 TTGGATAATTTCAAC
128361906 AATCATGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (16 bp):
TTGGATAATTTCAACC
Found at i:128363135 original size:30 final size:30
Alignment explanation
Indices: 128363075--128363156 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
128363065 AATTAAATTA
* * * *
128363075 ATACCGAAACCGGGATATCCGCAGGTGGGAT
1 ATACCTAAGCCGGGATATCC-TAAGTGGGAT
* *
128363106 ATACCTCAGCCGGGCTATCCTAAGTGGGAT
1 ATACCTAAGCCGGGATATCCTAAGTGGGAT
128363136 ATACCTAAGCCGGGATATCCT
1 ATACCTAAGCCGGGATATCCT
128363157 CGGAATTATA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 27 0.63
31 16 0.37
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.21
Consensus pattern (30 bp):
ATACCTAAGCCGGGATATCCTAAGTGGGAT
Found at i:128363152 original size:16 final size:16
Alignment explanation
Indices: 128363101--128363153 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
128363091 ATCCGCAGGT
*
128363101 GGGATATACCTCAGCC
1 GGGATATACCTAAGCC
* *
128363117 GGGCTAT-CCTAAG-T
1 GGGATATACCTAAGCC
128363131 GGGATATACCTAAGCC
1 GGGATATACCTAAGCC
128363147 GGGATAT
1 GGGATAT
128363154 CCTCGGAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 6 0.20
15 11 0.37
16 13 0.43
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (16 bp):
GGGATATACCTAAGCC
Found at i:128363345 original size:42 final size:42
Alignment explanation
Indices: 128363252--128363345 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
128363242 CGAACCGGGA
* * *
128363252 TGGGATATCAGAGGGATATCCCGGAATTGATTATTCTAAGAG
1 TGGGATATGAGAGGGATATCCCGGAATAGATTATTCCAAGAG
*
128363294 -GGGAAATGAGAGGGATATCCCTGGAATAGATTATTCCAAG-G
1 TGGGATATGAGAGGGATATCCC-GGAATAGATTATTCCAAGAG
128363335 TGGGATATGAG
1 TGGGATATGAG
128363346 CGGTATTTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 20 0.44
42 25 0.56
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (42 bp):
TGGGATATGAGAGGGATATCCCGGAATAGATTATTCCAAGAG
Found at i:128368304 original size:31 final size:31
Alignment explanation
Indices: 128368266--128368328 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
128368256 AGTACGAGAA
128368266 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
128368297 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
128368328 G
1 G
128368329 AAATAAGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.57, C:0.03, G:0.33, T:0.06
Consensus pattern (31 bp):
GGGAGGAAGAGAGAATAATGAAAACAAAAAG
Found at i:128370669 original size:39 final size:39
Alignment explanation
Indices: 128370615--128370697 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
128370605 GGTGGTGACG
*
128370615 GGTGGACCAATGGTGACTACCTGACTGGTGAACGATGAT
1 GGTGGACCAATGGTGACTACCTGACTGGTGAACGACGAT
** *
128370654 GGTGGACCGGTGGTGACTGCCTGACTGGTGAACGACGAT
1 GGTGGACCAATGGTGACTACCTGACTGGTGAACGACGAT
128370693 GGTGG
1 GGTGG
128370698 TGGCCAGTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.18, G:0.40, T:0.22
Consensus pattern (39 bp):
GGTGGACCAATGGTGACTACCTGACTGGTGAACGACGAT
Found at i:128373777 original size:16 final size:16
Alignment explanation
Indices: 128373756--128373787 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
128373746 TAATATTCAA
128373756 CTGAAACTATTCTCTT
1 CTGAAACTATTCTCTT
128373772 CTGAAACTATTCTCTT
1 CTGAAACTATTCTCTT
128373788 TCTTCCACGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
CTGAAACTATTCTCTT
Found at i:128377126 original size:21 final size:21
Alignment explanation
Indices: 128377095--128377152 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
128377085 CAAATAGGTT
128377095 AAAAATA-TGAACCGGACACC
1 AAAAATACTGAACCGGACACC
*
128377115 AAAACA-ACTGAACCGGACACT
1 AAAA-ATACTGAACCGGACACC
128377136 AAAAATACTGAACCGGA
1 AAAAATACTGAACCGGA
128377153 ACGGAATATG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
20 6 0.18
21 28 0.82
ACGTcount: A:0.50, C:0.24, G:0.16, T:0.10
Consensus pattern (21 bp):
AAAAATACTGAACCGGACACC
Found at i:128380442 original size:479 final size:481
Alignment explanation
Indices: 128379609--128380571 Score: 1894
Period size: 479 Copynumber: 2.0 Consensus size: 481
128379599 ACAAGCCTTG
128379609 GATACACAAATTGCAAATTCTAACACTAAATTATTTCATCGGACATCTTTGAGCCTTATGTTTTT
1 GATACACAAATTGCAAATTCTAACACTAAATTATTTCATCGGACATCTTTGAGCCTTA-GTTTTT
128379674 TCCATTACACACCTTACAAGTGTTTTAGTGATTGCAATAAGTTGATGGATTGAAATAACTTGGTG
65 TCCATTACACACCTTACAAGTGTTTTAGTGATTGCAATAAGTTGATGGATTGAAATAACTTGGTG
128379739 ATGAGCTTTTTAATTCTAGATCAATGACATAATCTCTGTTCATTGGGAAGGTCATCTATTTTGAC
130 ATGAGCTTTTTAATTCTAGATCAATGACATAATCTCTGTTCATTGGGAAGGTCATCTATTTTGAC
128379804 TCAAGGAAGGAGGGGTATATGCAATTTAACTCTAAAGACAATCTCTTCCAACAAGGATGAATAAT
195 TCAAGGAAGGAGGGGTATATGCAATTTAACTCTAAAGACAATCTCTTCCAACAAGGATGAATAAT
128379869 GGATATTGCTTTAAGGTTCTATTAGGGTTTTTCGTTGTACGGATATATTTAGAAGCTCAATTTAT
260 GGATATTGCTTTAAGGTTCTATTAGGGTTTTTCGTTGTACGGATATATTTAGAAGCTCAATTTAT
128379934 CTCATGGATTTATGGTCTATACCTATAATCACTTGCATATCAAGTTTTAAGCCTTTCCTCAGTAT
325 CTCATGGATTTATGGTCTATACCTATAATCACTTGCATATCAAGTTTTAAGCCTTTCCTCAGTAT
128379999 TGATGCTCTTTCAGTTCCCCACCTTCTTATAACCACTAATACTCTCTTAGTCTCTACCACCAGAA
390 TGATGCTCTTTCAGTTCCCCACCTTCTTATAACCACTAATACTCTCTTAGTCTCTACCACCAGAA
128380064 TTTCTCAATACAATTTCCATTTACTTT
455 TTTCTCAATACAATTTCCATTTACTTT
128380091 GATACACAAATTGCAAATTCTAACACTAAATTATTTCATCGGACATCTTTGAGCCTTA-TTTTTT
1 GATACACAAATTGCAAATTCTAACACTAAATTATTTCATCGGACATCTTTGAGCCTTAGTTTTTT
128380155 CCATTACACACCTTACAAGTGTTTTAGTGATTGCAATAAGTTGATGGATTGAAATAACTTGGTGA
66 CCATTACACACCTTACAAGTGTTTTAGTGATTGCAATAAGTTGATGGATTGAAATAACTTGGTGA
128380220 TGAGCTTTTTAATTCTAGATCAATGACATAATCTCTGTTCATTGGGAAGGTCATCTATTTTGACT
131 TGAGCTTTTTAATTCTAGATCAATGACATAATCTCTGTTCATTGGGAAGGTCATCTATTTTGACT
128380285 CAAGGAAGGA-GGGTATATGCAATTTAACTCTAAAGACAATCTCTTCCAACAAGGATGAATAATG
196 CAAGGAAGGAGGGGTATATGCAATTTAACTCTAAAGACAATCTCTTCCAACAAGGATGAATAATG
*
128380349 GATATTGCTTTAAGGTTCTATTAGGGTTTTTCGTTGTATGGATATATTTAGAAGCTCAATTTATC
261 GATATTGCTTTAAGGTTCTATTAGGGTTTTTCGTTGTACGGATATATTTAGAAGCTCAATTTATC
128380414 TCATGGATTTATGGTCTATACCTATAATCACTTGCATATCAAGTTTTAAGCCTTTCCTCAGTATT
326 TCATGGATTTATGGTCTATACCTATAATCACTTGCATATCAAGTTTTAAGCCTTTCCTCAGTATT
128380479 GATGCTCTTTCAGTTCCCCACCTTCTTATAACCACTAATACTCTCTTAGTCTCTACCACCAGAAT
391 GATGCTCTTTCAGTTCCCCACCTTCTTATAACCACTAATACTCTCTTAGTCTCTACCACCAGAAT
128380544 TTCTCAATACAATTTCCATTTACTTT
456 TTCTCAATACAATTTCCATTTACTTT
128380570 GA
1 GA
128380572 CTCCCATTTT
Statistics
Matches: 480, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
479 276 0.57
480 146 0.30
482 58 0.12
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (481 bp):
GATACACAAATTGCAAATTCTAACACTAAATTATTTCATCGGACATCTTTGAGCCTTAGTTTTTT
CCATTACACACCTTACAAGTGTTTTAGTGATTGCAATAAGTTGATGGATTGAAATAACTTGGTGA
TGAGCTTTTTAATTCTAGATCAATGACATAATCTCTGTTCATTGGGAAGGTCATCTATTTTGACT
CAAGGAAGGAGGGGTATATGCAATTTAACTCTAAAGACAATCTCTTCCAACAAGGATGAATAATG
GATATTGCTTTAAGGTTCTATTAGGGTTTTTCGTTGTACGGATATATTTAGAAGCTCAATTTATC
TCATGGATTTATGGTCTATACCTATAATCACTTGCATATCAAGTTTTAAGCCTTTCCTCAGTATT
GATGCTCTTTCAGTTCCCCACCTTCTTATAACCACTAATACTCTCTTAGTCTCTACCACCAGAAT
TTCTCAATACAATTTCCATTTACTTT
Found at i:128383643 original size:22 final size:22
Alignment explanation
Indices: 128383618--128383666 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
128383608 GTTTTTTTTC
*
128383618 TTATTTTATTACTATTTTATTA
1 TTATTTTACTACTATTTTATTA
* * *
128383640 TTATGTTGCTACTATTTTATTG
1 TTATTTTACTACTATTTTATTA
128383662 TTATT
1 TTATT
128383667 ATTTGGATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.65
Consensus pattern (22 bp):
TTATTTTACTACTATTTTATTA
Found at i:128383717 original size:20 final size:19
Alignment explanation
Indices: 128383687--128383733 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
128383677 GGTATAAAAC
* *
128383687 TTATTTTTTAATAATTTTG
1 TTATTTTTTAAAAAATTTG
128383706 TTATTATTTTAAAAAATTTG
1 TTATT-TTTTAAAAAATTTG
128383726 TTAATTTT
1 TT-ATTTT
128383734 GTTATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.21
20 16 0.67
21 3 0.12
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
TTATTTTTTAAAAAATTTG
Found at i:128383818 original size:21 final size:19
Alignment explanation
Indices: 128383794--128383842 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
128383784 TTAAGTATAT
*
128383794 ATTTTTTAAAATTTATTTTTA
1 ATTTTTTAAAA-GTA-TTTTA
*
128383815 ATTTTTGAAAAGTATTTTA
1 ATTTTTTAAAAGTATTTTA
128383834 ATATTTTTA
1 AT-TTTTTA
128383843 GTATTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 7 0.29
20 7 0.29
21 10 0.42
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
ATTTTTTAAAAGTATTTTA
Found at i:128383838 original size:28 final size:27
Alignment explanation
Indices: 128383807--128383872 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 27
128383797 TTTTAAAATT
*
128383807 TATTTTTAATTTTTGAAAAGTATTTTA-A
1 TATTTTTAATTTTT--AAAGTATTATATA
*
128383835 TATTTTTAGTATTTTTAATGTATTATATA
1 TATTTTTA--ATTTTTAAAGTATTATATA
128383864 TATTTTTAA
1 TATTTTTAA
128383873 ATTATATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
27 1 0.03
28 17 0.52
29 9 0.27
30 6 0.18
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (27 bp):
TATTTTTAATTTTTAAAGTATTATATA
Found at i:128387032 original size:40 final size:40
Alignment explanation
Indices: 128386928--128387079 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
128386918 TCGAATGGTG
* * * *
128386928 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
128386969 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
128387009 ACCAGGTTAAGTCCCGAAAGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
128387049 TCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
128387080 ATCACTATAA
Statistics
Matches: 90, Mismatches: 21, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
40 65 0.72
41 25 0.28
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:128387094 original size:40 final size:40
Alignment explanation
Indices: 128386928--128387112 Score: 153
Period size: 40 Copynumber: 4.6 Consensus size: 40
128386918 TCGAATGGTG
* ** * *
128386928 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAA-TTACTAAA
* * *
128386969 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AATTCCCGAAGGCAATTGTGCGAATTACTAAA
* * * * * *
128387009 ACCAGGTTAAGTCCCGAAAGC-ATTCGTGCGAGTTACTAAA
1 TCCGGGCTAATTCCCGAAGGCAATT-GTGCGAATTACTAAA
*
128387049 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTA-AA
*
128387090 -CCGGGC-AATGTCCCGAAGACAAT
1 TCCGGGCTAAT-TCCCGAAGGCAAT
128387113 CGAGCGAGTC
Statistics
Matches: 118, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.04
40 81 0.69
41 32 0.27
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTAAA
Found at i:128387120 original size:80 final size:80
Alignment explanation
Indices: 128386963--128387147 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
128386953 GTGCTAAGTG
* * * **
128386963 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCAGGTTAAGTCCCGAAA
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCAGGGCAAGTCCCGAAA
* *
128387028 GCATTCGTGCGAGTT
66 GCAATCGAGCGAGTT
* *
128387043 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACC-GGGCAATGTCCCG-
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCAGGGCAA-GTCCCGA
*
128387105 AAGACAATCGAGCGAGTC
64 AAG-CAATCGAGCGAGTT
* * * *
128387123 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
128387148 TACGTGATTC
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
79 15 0.17
80 72 0.83
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCAGGGCAAGTCCCGAAA
GCAATCGAGCGAGTT
Found at i:128387128 original size:40 final size:40
Alignment explanation
Indices: 128387050--128387133 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
128387040 GTTACTAAAT
* * *
128387050 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
128387090 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
128387130 CCGG
1 CCGG
128387134 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.19
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:128392091 original size:18 final size:19
Alignment explanation
Indices: 128392068--128392103 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
128392058 AACTTGGCAC
*
128392068 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
128392086 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
128392104 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:128400486 original size:42 final size:43
Alignment explanation
Indices: 128400391--128400488 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 43
128400381 ATCCCAGATG
* * * * *
128400391 TGGTCTTACATGTAATCAAATACCGATACCACTATCTTAGACA
1 TGGTCTTACACGAAATCAAATACCAATACCAATATCCTAGACA
* *
128400434 GGGTCTTACACGAAATCAAATA-CAATGCCAATATCCTAGACA
1 TGGTCTTACACGAAATCAAATACCAATACCAATATCCTAGACA
128400476 TGGTCTTACACGA
1 TGGTCTTACACGA
128400489 TAACACATAT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGAAATCAAATACCAATACCAATATCCTAGACA
Found at i:128406650 original size:93 final size:93
Alignment explanation
Indices: 128406491--128406661 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
128406481 GGATGGTTGA
* * * *
128406491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
128406556 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
128406584 GCATCCAAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
128406649 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
128406662 ACTTCGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:128406664 original size:46 final size:46
Alignment explanation
Indices: 128406495--128406665 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
128406485 GGTTGAGCAT
* * *
128406495 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
128406541 CTGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
128406586 ATCCAAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
128406634 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
128406666 CGGGGCGGGT
Statistics
Matches: 98, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 55 0.56
47 24 0.24
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:128411413 original size:37 final size:37
Alignment explanation
Indices: 128411363--128411453 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
128411353 TTATTACGAA
*
128411363 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCACCGG
*
128411400 GTCTTACCCGGACATAATCTCCATACGTAGTCACCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCACCGG
*
128411437 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
128411454 TTTCCAAGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 45 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCACCGG
Found at i:128411551 original size:48 final size:48
Alignment explanation
Indices: 128411493--128411692 Score: 346
Period size: 48 Copynumber: 4.2 Consensus size: 48
128411483 TGTTACAACA
* *
128411493 TTCACATTAGCCATTCGGCTTTACCACACATACGCATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
128411541 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
128411589 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
128411637 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
128411685 TTCACATT
1 TTCACATT
128411693 CATCACATCG
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Done.